ALMS_motif domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30021404 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 23
Homology
BLAST of ALMS_motif domain-containing protein vs. Ensembl Human
Match: C10orf90 (chromosome 10 open reading frame 90 [Source:HGNC Symbol;Acc:HGNC:26563]) HSP 1 Score: 51.6026 bits (122), Expect = 3.647e-6 Identity = 39/160 (24.38%), Postives = 83/160 (51.88%), Query Frame = 1 Query: 3448 LQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPLSADRQIRVSAQRKTRNNVIKSSSVNGKKYPISEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLR 3927 LQ A E + FISRS++R K+++ +++R+ + + +L + + P++ ++ +Q + +P+S++L+KP+ R S+ EM +S + Y LPEV+ K ++RK+ +Q+NR++ ++ +++L LL+ Sbjct: 115 LQEALEVRKPQFISRSQERLKKLEHMVQQRKAQRKEDLRQKQSLL-------PIR----------TSKKQFTIP-------------------HPLSDNLFKPKERCISEKEMHMRSKRIYDNLPEVKKKKEEQRKRVILQSNRLRAEVFKKQLLDQLLQ 238
BLAST of ALMS_motif domain-containing protein vs. Ensembl Human
Match: C10orf90 (chromosome 10 open reading frame 90 [Source:HGNC Symbol;Acc:HGNC:26563]) HSP 1 Score: 52.373 bits (124), Expect = 6.266e-6 Identity = 41/160 (25.62%), Postives = 81/160 (50.62%), Query Frame = 1 Query: 3448 LQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPLSADRQIRVSAQRKTRNNVIKSSSVNGKKYPISEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLR 3927 LQ A E + FISRS++R K+++ +++R+ + + +L + + IR S ++ T +P+S++L+KP+ R S+ EM +S + Y LPEV+ K ++RK+ +Q+NR++ ++ +++L LL+ Sbjct: 572 LQEALEVRKPQFISRSQERLKKLEHMVQQRKAQRKEDLRQKQSLLP------------------------IRTSKKQFT------------IPHPLSDNLFKPKERCISEKEMHMRSKRIYDNLPEVKKKKEEQRKRVILQSNRLRAEVFKKQLLDQLLQ 695
BLAST of ALMS_motif domain-containing protein vs. Ensembl Zebrafish
Match: alms1 (ALMS1 centrosome and basal body associated protein [Source:ZFIN;Acc:ZDB-GENE-030131-4837]) HSP 1 Score: 66.6254 bits (161), Expect = 2.771e-10 Identity = 51/181 (28.18%), Postives = 81/181 (44.75%), Query Frame = 1 Query: 3400 MYSDENIKDSSHQKSGLQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPLSADRQIRVSAQRKTRNNVIKSSSVNGKKYPISEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLRNRGPW 3942 M +D + K S+ + LQ A E F+SRSR+R KR+ L +EERR ++ N ER LF + RP++ PV PR+R + EM +S +KY LPEVQ + +E+++A ++ R+ L+ +++ +L R PW Sbjct: 1968 METDISDKTSALVRLSLQEALELHRPEFVSRSRERMKRLGLLVEERRLQAIFNREREELF-NFPAPSRPLRAAPV-------------------------------------------PRKRVVPRKEMVQRSREKYAKLPEVQKRREEEKRRAEYRSYRLTAQLFNKKVTNRVLGRRAPW 2104
BLAST of ALMS_motif domain-containing protein vs. TrEMBL
Match: A0A1S3KD55 (uncharacterized protein LOC106180931 OS=Lingula unguis OX=7574 GN=LOC106180931 PE=4 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 9.108e-16 Identity = 62/178 (34.83%), Postives = 91/178 (51.12%), Query Frame = 1 Query: 3412 ENIKDSSHQKSGLQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPLSADRQIRVSAQRKTRNNVIKSSSVNGKKYPISEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLRNRGPWV 3945 E IK S +K LQ AF ISRSR+RQ+RI LA EER+ + Q N ER LFA QR+ N +P SE L++P++R +K+EMR S K YQ LPEV K +++++ + + NR++ L+ E++L +L+N+GPW+ Sbjct: 2535 EKIKPS--EKLTLQEAFVLFKGEAISRSRERQRRIVLAAEERKVQEQHNRERLHLFAD-----------------------------QRRKH--------ANPNAHPYSEQLHQPKQRVMTKSEMREHSLKIYQKLPEVIQKIEEKKRQEKYKTNRIRAQLFKEKVLNKVLKNKGPWL 2673
BLAST of ALMS_motif domain-containing protein vs. TrEMBL
Match: R7UQH0 (ALMS_motif domain-containing protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_229158 PE=4 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.022e-15 Identity = 65/243 (26.75%), Postives = 107/243 (44.03%), Query Frame = 1 Query: 3274 RHMKTGDTKVTRGGLSWAVGSNGKDSNNSPHPKNKEENPK---SWMYSDENIKDSSHQK--------------SGLQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPLSADRQIRVSAQRKTRNNVIKSSSVNGKKYPISEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLRNRGPWVAA 3951 RH + + +SW V + N P + + E P SW+ ++E++K + Q+ + LQ AFE FIS SR+RQK + + EERR + LER++LF + N +PISEHL+KP++R+ ++ EM+ + +KY+ LPEV D ++ + + NR++ LY ++I L+ GPW+ A Sbjct: 1707 RHKAPSRRQKPKPAVSWFVPVVKR---NPPFKERQNETPAKFGSWILTEEDMKPALDQQRPSLPKRELKSKNMTSLQEAFERNKREFISASRERQKHVAIRAEERRVQELHQLERAKLFG-------------------------------------FVPRKQANRDAHPISEHLFKPKQRFMTRQEMKEMTQRKYKKLPEVVRAAEDRKRTEQYRLNRLRAKLYQKKIQNMALKKPGPWLKA 1909
BLAST of ALMS_motif domain-containing protein vs. TrEMBL
Match: A0A0L8HP93 (ALMS_motif domain-containing protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22010986mg PE=4 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.068e-13 Identity = 51/159 (32.08%), Postives = 87/159 (54.72%), Query Frame = 1 Query: 3448 LQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPLSADRQIRVSAQRKTRNNVIKSSSVNGKKYPISEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLL 3924 LQ AF++ M N+ISRSR+RQKRI LA +ERRY+ QM +ER+++F + K S+ + P+ E+LYKP++R FSK EM+ + K Y+ LPEV ++ +++ +K + + N+ K ++ ++ +++L Sbjct: 878 LQEAFQNYMPNWISRSRERQKRILLAAQERRYQMQMEMERNKIFQNK-------------------------------------KPSTTASENDPVCENLYKPKKRAFSKQEMKELNWKLYRNLPEVISQKVEQTRKIQYKYNKTKSRVFSMKVQKNIL 999
BLAST of ALMS_motif domain-containing protein vs. TrEMBL
Match: A0A074Z8P0 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_08620 PE=4 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 7.981e-13 Identity = 68/235 (28.94%), Postives = 104/235 (44.26%), Query Frame = 1 Query: 3364 HPKNKEENPKSWMYSDENIKDSSHQKSG--------------LQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNN---EDGRPVKRRPVTQPDPLSADRQIRVSAQR------------KTRNNVIKSSSVNGKKYPI-----SEHLYKPRRRYFSKNEM--------RFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLRNRGPW 3942 HP + E + + + + DSS +G LQ+ F +M +ISRSR+RQKRI+LA + RRY + MN ER LF N+ RP++R P S Q AQR +T + S N + I + RR + E+ R + + +P Q + E K A ++ NR++M +YGE++L+S+L+ RGPW Sbjct: 1575 HPSDHESVYHTTTSARQKLHDSSTLVTGTSDERSEESALAQDLQTLFRQRMSRWISRSRERQKRIQLAAKNRRYTAAMNAERVSLFVGNSRIYSPTRPLRR-------PASGQSQEECPAQRCSCSARLCHCPARTLHTRSPCCSANTTRMTIPMQNAKDSQVTSRRPQLTAAEICSAPRDGSRCRGRPRRYLIPREQQRMALEHKMANLRTNRLRMKIYGEKVLRSVLQRRGPW 1802
BLAST of ALMS_motif domain-containing protein vs. TrEMBL
Match: C3YIM0 (ALMS_motif domain-containing protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_97626 PE=4 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.847e-12 Identity = 55/160 (34.38%), Postives = 84/160 (52.50%), Query Frame = 1 Query: 3448 LQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPLSADRQIRVSAQRKTRNNVIKSSSVNGKKYPISEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLR 3927 LQ A + + FIS+SR+R +R++LA EERR+E +ER RLF G +R T+P PLS E+L++P++R +K EM +S + Y+ LPEVQ K ER++A ++NR+K L+ +++L SL R Sbjct: 2729 LQEALKMRNPAFISKSRERVRRMELAAEERRHEEAFEMERMRLF------GEERRRLQATEPAPLS-------------------------------ENLHRPKKRTITKKEMAARSKRMYEKLPEVQRKKAQERRQAAYKSNRIKAQLFKKKVLDSLRR 2851
BLAST of ALMS_motif domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000052153.1 (pep primary_assembly:Astyanax_mexicanus-2.0:9:1011125:1032211:1 gene:ENSAMXG00000041575.1 transcript:ENSAMXT00000052153.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 50.8322 bits (120), Expect = 8.733e-6 Identity = 23/68 (33.82%), Postives = 45/68 (66.18%), Query Frame = 1 Query: 3721 KKYPISEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLL 3924 K +P+S++L+KP+ R S EM+ +S + Y LPEV K +E+++ +Q NR++ ++ +++L +L Sbjct: 477 KPHPLSDNLFKPKDRVISGKEMQLRSRRIYNKLPEVTKKKEEEKRRMVLQTNRLRAEVFKKKLLDQIL 544
BLAST of ALMS_motif domain-containing protein vs. Planmine SMEST
Match: SMESG000077136.1 (SMESG000077136.1) HSP 1 Score: 2254.94 bits (5842), Expect = 0.000e+0 Identity = 1247/1255 (99.36%), Postives = 1250/1255 (99.60%), Query Frame = 1 Query: 193 MEHLFQENVKEKDFPXXXXXXXXXXXXXXXXXSSSDKNLKFNAEDSNKFTKPYNKNFNFETLNRDLADIEERLRATRLGWNKSGKSVNESNEIDGKDFVRKSWSLLDIEKRPYSNGSSINDLDSNKPFSGEKINCESPALSDGLLKWDYGADIGLNQDDSDDMEPITWPVTAEQAQRDFQASESNGIGRRMKMSLSQGSFLSSPDPEDRHNIIAKISAEYKSNKILHSLKNKNTTASTEIISKANGIYDDLSAKQIMEQXXXXXXXXXXXXXXXXXXHLNDHSRFQETDADKESPMEQPGDINDGIPSQNFPDSRMSKDAQFDEIDSNNELMNVTVKNQQNKLIEDIVSNVQKPNFLEEECISPNSFSNTGRTTTVESTHASSDYGKAPVFTGEIYGSRKDIHFIESGFVMYSKQNRETFIGKTKSLDNKEMRNPRIICGIPPELDTISSRETLQITDEXXXXXXXXAKTNNSNTVNIDEMKDSDNHLSDKDVSQENSLQAKWNQFKAMMKDEEYDNLIEKTNIRSAVQYVSPVNGKSYEHCNXXXXXXXXXXXXXXXXXXPRYDSFATEVFRNPQKESHNNQRNSISKRTGSQEDKNRSNSGIIVENKIYRASNQKYNSNQDLPSRSKPXXXXXXXXXXXXXXXXXXXXXXSQTERRKLRHTAELAKFKKRFGSGALDGETTASELEHDDLSKFKRNLMEKDKRKKQLSHMLTEISKQGXXXXXXXXXXXXXXXXXXXTMLLMNKMSHLLKKKAPDNNSKRDFRKCCVEKPDRRCVEHSNQKERPIKNPKRVIESDDAKLILKHLMLKQKVKWLADCAREESRRRKIHKLQKLMDLYEHGNPIIIPDDLETDTATLMGSNRNSQEDLCSHSDSYSVYESDISDAGEIGPPKAAEGNFHXXXXXXXXXXXXXXQKHRNGSKESFNLPKESSMNNQQQKSYPVSEAWHIPLREPDSQKLKDFNDSNEFCCDSPCSDEINQKYFRQSCANTYSQIPVKPVNXXXXXXXXXXXXXXXXXXXXXHECQKDLRHMKTGDTKVTRGGLSWAVGSNGKDSNNSPHPKNKEENPKSWMYSDENIKDSSHQKSGLQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPLSADRQIRVSAQRKTRNNVIKSSSVNGKKYPISEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLRNRGPWVAAQS 3957 MEHLFQENVKEKDFPESSDDKDIDKEKFISEISSSDKNLKFNAEDSNKFTKPYNKNFNFETLNRDLADIEERLRATRLGWNKSGKSVNESNEIDGKDFVRKSWSLLDIEKRPYSNGSSINDLDSNKPFSGEKINCESPALSDGLLKWDYGADIGLNQDDSDDMEPITWPVTAEQAQRDFQASESNGIGRRMKMSLSQGSFLSSPDPEDRHNIIAKISAEYKSNKILHSLKNKNTTASTEIISKANGIYDDLSAKQIMEQAEEAEKRLRLRLEAVKALHLNDHSRFQETDADKESPMEQPGDINDGIPSQNFPDSRMSKDAQFDEIDSNNELMNVTVK+QQNK+IEDIVSNVQKPNF EEECISPNSFSNTGRTTTVESTHASSDYGKAPVFTGEIYGSRKDIHFIESGFVMYSKQNRETFIGKTKSLDNKEMRNPRIICGIPPELDTISSRETLQITDEKKDDLLLLAKTNNSNTVNIDEMKDSDNHLSDKDVSQENSLQAKWNQFKAMMKDEEYDNLIEKTNIRSAVQYVSPVNGKSYEHCNTNRQASTATTFTTITNISPRYDSFATEVFRNPQKESHNNQRNSISKRTGSQEDKNRSNSGIIVENKIYRA NQKYNSNQDLPSRSKPGKRLTTGSGGGGRDNEDNDDEKSQTERRKLRHTAELAKFKKRFGSGALDGETTASELEHDDLSKFKRNLMEKDKRKKQLSHMLTEISKQGVADDSVQDFSDVSESSSVDTMLLMNKMSHLLKKKAPDNNSKRDFRKCCVEKPDRRCVEHSNQKERPI+NPKRVIESDDAKLILKHLMLKQKVKWLADCAREESRRRKIHKLQKLMDLYEHGNPIIIPDDLETDTATLMGSNRNSQEDLCSHSDSYSVYESDISDAGEIGPPKAAEGNFHSNKNKKYPPKSPIPQKHRNGSKESFNLPKESSMNNQQQKSYPVSEAWHIPLREPDSQKLKDFNDSNEFCCDSPCSDEINQKYFRQSCANTY QIPVKPVNLTARERLKLRRELELARQRNAHECQKDLRHMKT DTKVTRGGLSWAVGSNGKDSNNSPHPKNKEEN KSWMYSDENIKDSSHQKSGLQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPLSADRQIRVSAQRKTRNNVIKSSSVNGKKYPISEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLRNRGPWVAAQS Sbjct: 1 MEHLFQENVKEKDFPESSDDKDIDKEKFISEISSSDKNLKFNAEDSNKFTKPYNKNFNFETLNRDLADIEERLRATRLGWNKSGKSVNESNEIDGKDFVRKSWSLLDIEKRPYSNGSSINDLDSNKPFSGEKINCESPALSDGLLKWDYGADIGLNQDDSDDMEPITWPVTAEQAQRDFQASESNGIGRRMKMSLSQGSFLSSPDPEDRHNIIAKISAEYKSNKILHSLKNKNTTASTEIISKANGIYDDLSAKQIMEQAEEAEKRLRLRLEAVKALHLNDHSRFQETDADKESPMEQPGDINDGIPSQNFPDSRMSKDAQFDEIDSNNELMNVTVKSQQNKIIEDIVSNVQKPNFPEEECISPNSFSNTGRTTTVESTHASSDYGKAPVFTGEIYGSRKDIHFIESGFVMYSKQNRETFIGKTKSLDNKEMRNPRIICGIPPELDTISSRETLQITDEKKDDLLLLAKTNNSNTVNIDEMKDSDNHLSDKDVSQENSLQAKWNQFKAMMKDEEYDNLIEKTNIRSAVQYVSPVNGKSYEHCNTNRQASTATTFTTITNISPRYDSFATEVFRNPQKESHNNQRNSISKRTGSQEDKNRSNSGIIVENKIYRAGNQKYNSNQDLPSRSKPGKRLTTGSGGGGRDNEDNDDEKSQTERRKLRHTAELAKFKKRFGSGALDGETTASELEHDDLSKFKRNLMEKDKRKKQLSHMLTEISKQGVADDSVQDFSDVSESSSVDTMLLMNKMSHLLKKKAPDNNSKRDFRKCCVEKPDRRCVEHSNQKERPIRNPKRVIESDDAKLILKHLMLKQKVKWLADCAREESRRRKIHKLQKLMDLYEHGNPIIIPDDLETDTATLMGSNRNSQEDLCSHSDSYSVYESDISDAGEIGPPKAAEGNFHSNKNKKYPPKSPIPQKHRNGSKESFNLPKESSMNNQQQKSYPVSEAWHIPLREPDSQKLKDFNDSNEFCCDSPCSDEINQKYFRQSCANTYPQIPVKPVNLTARERLKLRRELELARQRNAHECQKDLRHMKTRDTKVTRGGLSWAVGSNGKDSNNSPHPKNKEENRKSWMYSDENIKDSSHQKSGLQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPLSADRQIRVSAQRKTRNNVIKSSSVNGKKYPISEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLRNRGPWVAAQS 1255
BLAST of ALMS_motif domain-containing protein vs. Planmine SMEST
Match: SMESG000077136.1 (SMESG000077136.1) HSP 1 Score: 2178.67 bits (5644), Expect = 0.000e+0 Identity = 1216/1255 (96.89%), Postives = 1219/1255 (97.13%), Query Frame = 1 Query: 193 MEHLFQENVKEKDFPXXXXXXXXXXXXXXXXXSSSDKNLKFNAEDSNKFTKPYNKNFNFETLNRDLADIEERLRATRLGWNKSGKSVNESNEIDGKDFVRKSWSLLDIEKRPYSNGSSINDLDSNKPFSGEKINCESPALSDGLLKWDYGADIGLNQDDSDDMEPITWPVTAEQAQRDFQASESNGIGRRMKMSLSQGSFLSSPDPEDRHNIIAKISAEYKSNKILHSLKNKNTTASTEIISKANGIYDDLSAKQIMEQXXXXXXXXXXXXXXXXXXHLNDHSRFQETDADKESPMEQPGDINDGIPSQNFPDSRMSKDAQFDEIDSNNELMNVTVKNQQNKLIEDIVSNVQKPNFLEEECISPNSFSNTGRTTTVESTHASSDYGKAPVFTGEIYGSRKDIHFIESGFVMYSKQNRETFIGKTKSLDNKEMRNPRIICGIPPELDTISSRETLQITDEXXXXXXXXAKTNNSNTVNIDEMKDSDNHLSDKDVSQENSLQAKWNQFKAMMKDEEYDNLIEKTNIRSAVQYVSPVNGKSYEHCNXXXXXXXXXXXXXXXXXXPRYDSFATEVFRNPQKESHNNQRNSISKRTGSQEDKNRSNSGIIVENKIYRASNQKYNSNQDLPSRSKPXXXXXXXXXXXXXXXXXXXXXXSQTERRKLRHTAELAKFKKRFGSGALDGETTASELEHDDLSKFKRNLMEKDKRKKQLSHMLTEISKQGXXXXXXXXXXXXXXXXXXXTMLLMNKMSHLLKKKAPDNNSKRDFRKCCVEKPDRRCVEHSNQKERPIKNPKRVIESDDAKLILKHLMLKQKVKWLADCAREESRRRKIHKLQKLMDLYEHGNPIIIPDDLETDTATLMGSNRNSQEDLCSHSDSYSVYESDISDAGEIGPPKAAEGNFHXXXXXXXXXXXXXXQKHRNGSKESFNLPKESSMNNQQQKSYPVSEAWHIPLREPDSQKLKDFNDSNEFCCDSPCSDEINQKYFRQSCANTYSQIPVKPVNXXXXXXXXXXXXXXXXXXXXXHECQKDLRHMKTGDTKVTRGGLSWAVGSNGKDSNNSPHPKNKEENPKSWMYSDENIKDSSHQKSGLQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPLSADRQIRVSAQRKTRNNVIKSSSVNGKKYPISEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLRNRGPWVAAQS 3957 MEHLFQENVKEKDFPESSDDKDIDKEKFISEISSSDKNLKFNAEDSNKFTKPYNKNFNFETLNRDLADIEERLRATRLGWNKSGKSVNESNEIDGKDFVRKSWSLLDIEKRPYSNGSSINDLDSNKPFSGEKINCESPALSDGLLKWDYGADIGLNQDDSDDMEPITWPVTAEQAQRDFQASESNGIGRRMKMSLSQGSFLSSPDPEDRHNIIAKISAEYKSNKILHSLKNKNTTASTEIISKANGIYDDLSAKQIMEQAEEAEKRLRLRLEAVKALHLNDHSRFQETDADKESPMEQPGDINDGIPSQNFPDSRMSKDAQFDEIDSNNELMNVTVK+QQNK+IEDIVSNVQKPNF EEECISPNSFSNTGRTTTVESTHASSDYGKAPVFTGEIYGSRKDIHFIESGFVMYSKQNRETFIGKTKSLDNKEMRNPRIICGIPPELDTISSRETLQITDEKKDDLLLLAKTNNSNTVNIDEMKDSDNHLSDKDVSQENSLQAKWNQFKAMMKDEEYDNLIEKTNIRSAVQYVSPVNGKSYEHCNTNRQASTATTFTTITNISPRYDSFATEVFRNPQKESHNNQRNSISKRTGSQEDKNRSNSGIIVENKIYRA NQKYNSNQDLPSRSKPGKRLTTGSGGGGRDNEDNDDEKSQTERRKLRHTAELAKFKKRFGSGALDGETTASELEHDDLSKFKRNLMEKDKRKKQLSHMLTEISKQGVADDSVQDFSDVSESSSVDTMLLMNKMSHLLKKKAPDNNSKRDFRKCCVEKPDRRCVEHSNQKERPI+NPKRVIESDDAKLILKHLMLKQKVKWLADCAREESRRRKIHKLQKLMDLYEHGNPIIIPDDLETDTATLMGSNRNSQEDLCSHSDSYSVYESDISDAGEIGPPKAAEGNFHSNKNKKYPPKSPIPQKHRNGSKESFNLPKESSMNNQQQKSYPVSEAWHIPLREPDSQKLKDFNDSNEFCCDSPCSDEINQKYFRQSCANTY QIPVKPVNLTARERLKLRRELELARQRNAHECQKDLRHMKT DTKVTRGGLSWAVGSNGKDSNNSPHPKNKEEN KSWMYSDENIKDSSHQKSGLQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPL SEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLRNRGPWVAAQS Sbjct: 1 MEHLFQENVKEKDFPESSDDKDIDKEKFISEISSSDKNLKFNAEDSNKFTKPYNKNFNFETLNRDLADIEERLRATRLGWNKSGKSVNESNEIDGKDFVRKSWSLLDIEKRPYSNGSSINDLDSNKPFSGEKINCESPALSDGLLKWDYGADIGLNQDDSDDMEPITWPVTAEQAQRDFQASESNGIGRRMKMSLSQGSFLSSPDPEDRHNIIAKISAEYKSNKILHSLKNKNTTASTEIISKANGIYDDLSAKQIMEQAEEAEKRLRLRLEAVKALHLNDHSRFQETDADKESPMEQPGDINDGIPSQNFPDSRMSKDAQFDEIDSNNELMNVTVKSQQNKIIEDIVSNVQKPNFPEEECISPNSFSNTGRTTTVESTHASSDYGKAPVFTGEIYGSRKDIHFIESGFVMYSKQNRETFIGKTKSLDNKEMRNPRIICGIPPELDTISSRETLQITDEKKDDLLLLAKTNNSNTVNIDEMKDSDNHLSDKDVSQENSLQAKWNQFKAMMKDEEYDNLIEKTNIRSAVQYVSPVNGKSYEHCNTNRQASTATTFTTITNISPRYDSFATEVFRNPQKESHNNQRNSISKRTGSQEDKNRSNSGIIVENKIYRAGNQKYNSNQDLPSRSKPGKRLTTGSGGGGRDNEDNDDEKSQTERRKLRHTAELAKFKKRFGSGALDGETTASELEHDDLSKFKRNLMEKDKRKKQLSHMLTEISKQGVADDSVQDFSDVSESSSVDTMLLMNKMSHLLKKKAPDNNSKRDFRKCCVEKPDRRCVEHSNQKERPIRNPKRVIESDDAKLILKHLMLKQKVKWLADCAREESRRRKIHKLQKLMDLYEHGNPIIIPDDLETDTATLMGSNRNSQEDLCSHSDSYSVYESDISDAGEIGPPKAAEGNFHSNKNKKYPPKSPIPQKHRNGSKESFNLPKESSMNNQQQKSYPVSEAWHIPLREPDSQKLKDFNDSNEFCCDSPCSDEINQKYFRQSCANTYPQIPVKPVNLTARERLKLRRELELARQRNAHECQKDLRHMKTRDTKVTRGGLSWAVGSNGKDSNNSPHPKNKEENRKSWMYSDENIKDSSHQKSGLQSAFESKMENFISRSRQRQKRIKLAMEERRYESQMNLERSRLFASNNEDGRPVKRRPVTQPDPL-------------------------------SEHLYKPRRRYFSKNEMRFQSAKKYQALPEVQAKYLDERKKARIQNNRMKMHLYGERILQSLLRNRGPWVAAQS 1224 The following BLAST results are available for this feature:
BLAST of ALMS_motif domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of ALMS_motif domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of ALMS_motif domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of ALMS_motif domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of ALMS_motif domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of ALMS_motif domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of ALMS_motif domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of ALMS_motif domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of ALMS_motif domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of ALMS_motif domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of ALMS_motif domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of ALMS_motif domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of ALMS_motif domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of ALMS_motif domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30021404 ID=SMED30021404|Name=ALMS_motif domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=4058bpback to top protein sequence of SMED30021404-orf-1 >SMED30021404-orf-1 ID=SMED30021404-orf-1|Name=SMED30021404-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1289bp MEDVISDENYRINSKTNSSEFIKRIDTYLEKGSMEHLFQENVKEKDFPESback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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