Y box protein-1

Overview
NameY box protein-1
Smed IDSMED30021386
Length (bp)2937
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Y box protein-1 (SMED30021386) t-SNE clustered cells

Violin plots show distribution of expression levels for Y box protein-1 (SMED30021386) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Y box protein-1 (SMED30021386) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Y box protein-1 (SMED30021386) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30021386

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 19

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30021386h1SMcG0013540 SmedASXL_006362SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30021386h1SMcG0013540 SmedASXL_006362SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30021386h1SMcG0013540 dd_Smed_v4_52_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021386h1SMcG0013540 Contig52395uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021386h1SMcG0013540 Contig52395newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gamma neoblastSMED30021386h1SMcG0013540 dd_Smed_v6_52_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30021386h1SMcG0013540 dd_Smed_v6_52_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948])

HSP 1 Score: 87.0409 bits (214), Expect = 1.947e-17
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNR 405
            A QV G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G + Y P+ R + R
Sbjct:   91 AIQVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSR-YAPNRRKSRR 182
[Close]
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948])

HSP 1 Score: 87.0409 bits (214), Expect = 1.947e-17
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNR 405
            A QV G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G + Y P+ R + R
Sbjct:   91 AIQVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSR-YAPNRRKSRR 182
[Close]
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX1 (Y-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8014])

HSP 1 Score: 83.1889 bits (204), Expect = 1.953e-16
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G K
Sbjct:   56 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 137
[Close]
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 81.2629 bits (199), Expect = 7.411e-16
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP+G  V G +
Sbjct:   88 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSR 169
[Close]
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 82.0333 bits (201), Expect = 9.295e-16
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP+G  V G +
Sbjct:   88 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSR 169
[Close]
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-1 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62213])

HSP 1 Score: 92.4337 bits (228), Expect = 6.498e-21
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ KNGYGFI+  D N  +DIFVH ++I  NN      SL D EEV+FDIV+G+KGLEA +VTGP+GG V G K
Sbjct:   18 ATKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSK 99
[Close]
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-2 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91306])

HSP 1 Score: 80.1073 bits (196), Expect = 3.831e-16
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:  142 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT------SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            + G VKW+S    YGFIS +D    KDIFVH ++I A +AT      +L D EEVLFD+V+G  G EA NVTGPNG +VIG +
Sbjct:   66 LQGKVKWYSVLRRYGFISRND--GEKDIFVHQTAI-AKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSR 145
[Close]
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-4 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5EDV3])

HSP 1 Score: 75.485 bits (184), Expect = 2.055e-14
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:  142 VTGHVKWFSSKNGYGFISVDDDNNS-KDIFVHHSSITANNAT-----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            V GHVKWFS +  YGF++ D   +  +D FVH ++IT ++       +L D E V+FDIV+G KG EA NVTGP+G +V G +
Sbjct:   89 VKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSR 171
[Close]
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-4 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5EDV3])

HSP 1 Score: 75.485 bits (184), Expect = 2.055e-14
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:  142 VTGHVKWFSSKNGYGFISVDDDNNS-KDIFVHHSSITANNAT-----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            V GHVKWFS +  YGF++ D   +  +D FVH ++IT ++       +L D E V+FDIV+G KG EA NVTGP+G +V G +
Sbjct:   89 VKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSR 171
[Close]
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-3 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91398])

HSP 1 Score: 72.7886 bits (177), Expect = 8.834e-14
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:  142 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT-----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            + G VKW+S    YGFIS  D    KD+FVH ++I+ ++       +LAD EEVLFD+V G  G EA NVTGP G +V G K
Sbjct:   64 LQGKVKWYSVLRRYGFISRSD--GEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSK 143
[Close]
BLAST of Y box protein-1 vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0305992)

HSP 1 Score: 80.1073 bits (196), Expect = 1.299e-15
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIG 366
            A++VTG VKWF+ K+GYGFI+ +D    +D+FVH S+I  NN      S+ DGE V FD+V G KG EA NVTGP+G  V G
Sbjct:   59 ATKVTGTVKWFNVKSGYGFINRND--TREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRG 138
[Close]
BLAST of Y box protein-1 vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0076027)

HSP 1 Score: 80.1073 bits (196), Expect = 1.350e-15
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIG 366
            A++VTG VKWF+ K+GYGFI+ +D    +D+FVH S+I  NN      S+ DGE V FD+V G KG EA NVTGP+G  V G
Sbjct:   59 ATKVTGTVKWFNVKSGYGFINRND--TREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRG 138
[Close]
BLAST of Y box protein-1 vs. Ensembl Fly
Match: lin-28 (gene:FBgn0035626 transcript:FBtr0077090)

HSP 1 Score: 56.225 bits (134), Expect = 1.551e-8
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  148 GHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIG 366
            G  KWF+   G+GF++ +D    +++FVH S I  +   SL + EEV F+  + ++GLEA  V+  +GG   G
Sbjct:   41 GKCKWFNVAKGWGFLTPND--GGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQG 111
[Close]
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 83.9593 bits (206), Expect = 5.993e-17
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G K
Sbjct:   36 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 117
[Close]
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 83.9593 bits (206), Expect = 5.993e-17
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G K
Sbjct:   36 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 117
[Close]
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 83.5741 bits (205), Expect = 7.805e-17
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G K
Sbjct:   36 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 117
[Close]
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: lin28a (lin-28 homolog A (C. elegans) [Source:NCBI gene;Acc:394066])

HSP 1 Score: 63.1586 bits (152), Expect = 8.063e-11
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:  145 TGHVKWFSSKNGYGFISVDDD-----NNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGG-KPYEPSDRSNNRGDR 414
            +G  KWF+ + G+GF+S+        ++  D+FVH S +      SL +GE V F   + +KGLE+  VTGP G   +G  K  + + +  ++GDR
Sbjct:   29 SGVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSSKGLESLQVTGPGGAPCVGSEKKPKGTQKRRSKGDR 124
[Close]
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: lin28a (lin-28 homolog A (C. elegans) [Source:NCBI gene;Acc:394066])

HSP 1 Score: 62.7734 bits (151), Expect = 1.393e-10
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:  145 TGHVKWFSSKNGYGFISVDDD-----NNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGG-KPYEPSDRSNNRGDR 414
            +G  KWF+ + G+GF+S+        ++  D+FVH S +      SL +GE V F   + +KGLE+  VTGP G   +G  K  + + +  ++GDR
Sbjct:   27 SGVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRSSKGLESLQVTGPGGAPCVGSEKKPKGTQKRRSKGDR 122
[Close]
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: ybx3 (Y-box binding protein 3 [Source:NCBI gene;Acc:548572])

HSP 1 Score: 82.4185 bits (202), Expect = 9.357e-17
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V G KG EA NVTGP G  V G +
Sbjct:   33 ATKVQGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEKGAEAANVTGPKGAPVQGSR 114
[Close]
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 83.1889 bits (204), Expect = 1.461e-16
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G K
Sbjct:   34 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 115
[Close]
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 80.8777 bits (198), Expect = 1.003e-15
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:  136 SQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            ++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G K
Sbjct:   43 TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 123
[Close]
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:100216028])

HSP 1 Score: 66.6254 bits (161), Expect = 2.705e-11
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:  145 TGHVKWFSSKNGYGFISVDDDN-----NSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIG 366
            +GH KWF+ + G+GFIS+         N  D+FVH S +      SL +GE V F   + +KG E+  VTGP G   +G
Sbjct:   34 SGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRVTGPGGNPCLG 112
[Close]
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:100216028])

HSP 1 Score: 66.6254 bits (161), Expect = 2.912e-11
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:  145 TGHVKWFSSKNGYGFISVDDDN-----NSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIG 366
            +GH KWF+ + G+GFIS+         N  D+FVH S +      SL +GE V F   + +KG E+  VTGP G   +G
Sbjct:   58 SGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRVTGPGGNPCLG 136
[Close]
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 82.4185 bits (202), Expect = 1.246e-16
Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEP 384
            A QV G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G + Y P
Sbjct:   15 AIQVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSR-YAP 99
[Close]
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx1 (Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146])

HSP 1 Score: 83.1889 bits (204), Expect = 1.247e-16
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G K
Sbjct:   54 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 135
[Close]
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 82.4185 bits (202), Expect = 1.789e-16
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP+G  V G +
Sbjct:   80 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSR 161
[Close]
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 82.8037 bits (203), Expect = 2.510e-16
Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEP 384
            A QV G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G + Y P
Sbjct:   92 AIQVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSR-YAP 176
[Close]
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 82.8037 bits (203), Expect = 3.134e-16
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP+G  V G +
Sbjct:   80 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSR 161
[Close]
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P41824|YBOXH_APLCA (Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.059e-18
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNRG 408
            ASQV+G VKWF+ K+GYGFI+ DD    +D+FVH ++I  NN      S+ DGE+V FD+V+G KG EA NVTGP G +V G K Y    R   RG
Sbjct:   30 ASQVSGTVKWFNVKSGYGFINRDD--TKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSK-YAADRRRFRRG 122
[Close]
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|Q9Y2T7|YBOX2_HUMAN (Y-box-binding protein 2 OS=Homo sapiens OX=9606 GN=YBX2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.351e-17
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNR 405
            A QV G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G + Y P+ R + R
Sbjct:   91 AIQVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSR-YAPNRRKSRR 182
[Close]
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P21573|YBOX1_XENLA (Y-box-binding protein 1 OS=Xenopus laevis OX=8355 GN=ybx1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.424e-16
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G K
Sbjct:   34 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEGVPVQGSK 115
[Close]
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P45441|YBX2B_XENLA (Y-box-binding protein 2-B OS=Xenopus laevis OX=8355 GN=ybx2-b PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.689e-16
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A+QV G VKWF+ +NGYGFI+ +D  + +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G +
Sbjct:   39 ATQVQGTVKWFNVRNGYGFINRND--SKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSR 120
[Close]
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|B5DE31|YBOX1_DANRE (Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=ybx1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.524e-16
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G K
Sbjct:   36 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 117
[Close]
BLAST of Y box protein-1 vs. TrEMBL
Match: I1ZIB0 (Y box protein-1 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.092e-53
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNRGDRD 417
            ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNRGDRD
Sbjct:   20 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNRGDRD 114
[Close]
BLAST of Y box protein-1 vs. TrEMBL
Match: A0A565DLG5 (Cold shock protein (Fragment) OS=Echiniscoides sigismundi OX=500494 GN=CSP PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.261e-19
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:  136 SQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITA----NNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEP 384
            +QV G VKWF+++ G+GFI  D  +N  DIFVHHS+I A        +LADGE+V FD+VQG KGLEA NVTGPNG +V G + Y+P
Sbjct:   13 TQVNGSVKWFNAQKGFGFIVRDGSDNGDDIFVHHSAIKAVDPNTTYRTLADGEQVTFDVVQGNKGLEAANVTGPNGNNVQGSR-YQP 98
[Close]
BLAST of Y box protein-1 vs. TrEMBL
Match: A0A3M7PA90 (Y-box factor-like protein OS=Brachionus plicatilis OX=10195 GN=BpHYR1_037785 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.285e-19
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:  136 SQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
             +VTG VKWF+ KNGYGFIS+DD    +DIF+HHS I  NN      S+ +GE+V FDIVQG KGLEA N+TGPNG  V G K
Sbjct:   35 QKVTGTVKWFNVKNGYGFISLDD--REEDIFIHHSGIARNNPKKQQKSVGEGEKVEFDIVQGEKGLEAANLTGPNGDPVQGSK 115
[Close]
BLAST of Y box protein-1 vs. TrEMBL
Match: A7S475 (Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g104083 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.124e-18
Identity = 52/95 (54.74%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNR 405
            A++VTG VKWF+ KNGYGFI+ DD  N +DIFVH ++I  NN      S+ DGE V F++V G KGLEA NVTGP+G  V G K      R NNR
Sbjct:    5 ATKVTGTVKWFNVKNGYGFINRDD--NKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSGTKGLEASNVTGPDGEPVQGSKYAPDRRRRNNR 97
[Close]
BLAST of Y box protein-1 vs. TrEMBL
Match: A0A261AUY1 (CSD_1 domain-containing protein (Fragment) OS=Caenorhabditis latens OX=1503980 GN=FL83_17696 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.460e-18
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ KNGYGFI+  D N  +DIFVH ++I  NN      SL D EEVLFDIV+G+KGLEA NVTGP+GG V G K
Sbjct:   18 ATKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSKGLEASNVTGPDGGPVQGSK 99
[Close]
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:103040011])

HSP 1 Score: 82.4185 bits (202), Expect = 1.476e-16
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G K
Sbjct:   37 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK 118
[Close]
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 77.411 bits (189), Expect = 6.769e-15
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEP 384
            A+ V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+  KG EA NVTGP G  V G + Y P
Sbjct:   28 ATLVQGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGPGGVPVKGSR-YAP 112
[Close]
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 77.0258 bits (188), Expect = 1.127e-14
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEP 384
            A+ V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+  KG EA NVTGP G  V G + Y P
Sbjct:   21 ATLVQGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGPGGVPVKGSR-YAP 105
[Close]
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: LIN28B (protein lin-28 homolog A [Source:NCBI gene;Acc:103022253])

HSP 1 Score: 65.4698 bits (158), Expect = 2.477e-11
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:  145 TGHVKWFSSKNGYGFISVDDDNNSK-----DIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIG 366
            +GH KWF+ + G+GFIS+     +      D+FVH S +      SL +GE V F   + +KGLE   VTGP G   +G
Sbjct:   30 SGHCKWFNVRMGFGFISMTSRGGNPIDPPLDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSSKGLECVRVTGPGGAHCVG 108
[Close]
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: LIN28B (protein lin-28 homolog A [Source:NCBI gene;Acc:103022253])

HSP 1 Score: 65.4698 bits (158), Expect = 2.591e-11
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:  145 TGHVKWFSSKNGYGFISVDDDNNSK-----DIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIG 366
            +GH KWF+ + G+GFIS+     +      D+FVH S +      SL +GE V F   + +KGLE   VTGP G   +G
Sbjct:   38 SGHCKWFNVRMGFGFISMTSRGGNPIDPPLDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSSKGLECVRVTGPGGAHCVG 116
[Close]
BLAST of Y box protein-1 vs. Ensembl Nematostella
Match: EDO41469 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S475])

HSP 1 Score: 92.4337 bits (228), Expect = 1.554e-22
Identity = 52/95 (54.74%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNR 405
            A++VTG VKWF+ KNGYGFI+ DD  N +DIFVH ++I  NN      S+ DGE V F++V G KGLEA NVTGP+G  V G K      R NNR
Sbjct:    5 ATKVTGTVKWFNVKNGYGFINRDD--NKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSGTKGLEASNVTGPDGEPVQGSKYAPDRRRRNNR 97
[Close]
BLAST of Y box protein-1 vs. Ensembl Nematostella
Match: EDO44703 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RV03])

HSP 1 Score: 62.3882 bits (150), Expect = 7.640e-10
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:  142 VTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGG 369
             TG VKWF+   G+GFI+ DD    +D+FVH S+I A+   SL +GE V   I    KG  A  VT P GG+V G 
Sbjct:  483 CTGSVKWFNLIKGFGFITRDD--GGEDVFVHQSAIKASGYRSLEEGEHVQLTISNSDKGKVAICVTSPGGGNVKGA 556
[Close]
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:100049221])

HSP 1 Score: 81.6481 bits (200), Expect = 2.374e-16
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGK 372
            A++V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+V+G KG EA NVTGP G  V G K
Sbjct:   38 ATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVAVQGSK 119
[Close]
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ENSORLT00000007880.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 80.4925 bits (197), Expect = 1.966e-15
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEP 384
            A+ V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+++ AKG EA NVTGP G  V G + Y P
Sbjct:  109 ATAVQGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSR-YAP 193
[Close]
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ENSORLT00000007875.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 80.1073 bits (196), Expect = 2.227e-15
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNAT----SLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEP 384
            A+ V G VKWF+ +NGYGFI+ +D    +D+FVH ++I  NN      S+ DGE V FD+++ AKG EA NVTGP G  V G + Y P
Sbjct:  109 ATAVQGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSR-YAP 193
[Close]
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:101160951])

HSP 1 Score: 69.707 bits (169), Expect = 8.480e-13
Identity = 37/99 (37.37%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:  145 TGHVKWFSSKNGYGFISVDDDNNSK-----DIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGG----KPYEPSDRSNNRGDR 414
            +G  KWF+ + G+GFIS+ +   S      D+FVH S +      SL +GE+V F   + +KGLE+  VTGP GG  +G     K   P  +   +GDR
Sbjct:   34 SGFCKWFNVRMGFGFISMTNSEGSPVEPPLDVFVHQSKLVMEGFRSLKEGEQVEFTYKKSSKGLESLRVTGPGGGPCVGSERRPKGKVPLQKRKPKGDR 132
[Close]
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:101160951])

HSP 1 Score: 69.707 bits (169), Expect = 1.179e-12
Identity = 37/99 (37.37%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:  145 TGHVKWFSSKNGYGFISVDDDNNSK-----DIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGG----KPYEPSDRSNNRGDR 414
            +G  KWF+ + G+GFIS+ +   S      D+FVH S +      SL +GE+V F   + +KGLE+  VTGP GG  +G     K   P  +   +GDR
Sbjct:   41 SGFCKWFNVRMGFGFISMTNSEGSPVEPPLDVFVHQSKLVMEGFRSLKEGEQVEFTYKKSSKGLESLRVTGPGGGPCVGSERRPKGKVPLQKRKPKGDR 139
[Close]
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058066.1 (SMESG000058066.1)

HSP 1 Score: 195.667 bits (496), Expect = 1.956e-57
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:  133 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNRGDRD 417
            ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNRGDRD
Sbjct:    3 ASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNRGDRD 97
[Close]
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058043.1 (SMESG000058043.1)

HSP 1 Score: 153.68 bits (387), Expect = 2.588e-43
Identity = 79/96 (82.29%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:  136 SQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEP-SDRSNNR-GDRD 417
            SQV GHVKWF+SKNGYGFISVD+DN+ KDIFVH  SI A NATSLADGEEVLFDIV+GAKGLEARNVTGPNGGDV+GG PYE  +DR NNR GDRD
Sbjct:    4 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAPYEQNNDRFNNRGGDRD 99
[Close]
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058039.1 (SMESG000058039.1)

HSP 1 Score: 148.288 bits (373), Expect = 2.036e-41
Identity = 76/96 (79.17%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:  136 SQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEP-SDRSNNR-GDRD 417
            SQVTGHVKWF+SKNGYGFISVD++   KD+FVH  SI A NATSLADGEEVLFDIV+GAKGLEARNVTGPNGGDV+GG  YE  +DR NNR GDRD
Sbjct:    4 SQVTGHVKWFNSKNGYGFISVDNERCDKDVFVHFKSIAATNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQNNDRFNNRGGDRD 99
[Close]
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000073546.1 (SMESG000073546.1)

HSP 1 Score: 132.109 bits (331), Expect = 1.162e-34
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:  136 SQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSD-RSNNR 405
            S+VTGHVKWF++K+GYGFI  D D    D+FVHHSSITA N+ SLADGEEVLFD+++G KGLEARNV GP+GG+V+GGKPY+P+D RSN R
Sbjct:    9 SKVTGHVKWFNTKSGYGFIKKDVD--GADVFVHHSSITATNSNSLADGEEVLFDVIEGPKGLEARNVCGPDGGNVVGGKPYQPNDNRSNIR 97
[Close]
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000078868.1 (SMESG000078868.1)

HSP 1 Score: 129.413 bits (324), Expect = 1.594e-34
Identity = 63/93 (67.74%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:  136 SQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNRGDR 414
            ++V GHVKWF+SK+GYGFI  +D  +S D+FVHHSSI A NA SLADGEEV FD+VQG+KGLEARNVTGPNGGDV+GGKPY   + + + G+R
Sbjct:    7 TKVNGHVKWFNSKSGYGFIRREDRKDS-DVFVHHSSIVATNANSLADGEEVQFDVVQGSKGLEARNVTGPNGGDVVGGKPYFQQNDNRSYGNR 98
The following BLAST results are available for this feature:
BLAST of Y box protein-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
YBX21.947e-1749.47Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG... [more]
YBX21.947e-1749.47Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG... [more]
YBX11.953e-1651.19Y-box binding protein 1 [Source:HGNC Symbol;Acc:HG... [more]
YBX37.411e-1650.00Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG... [more]
YBX39.295e-1650.00Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG... [more]
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BLAST of Y box protein-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cey-16.498e-2158.33C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62... [more]
cey-23.831e-1653.01C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91... [more]
cey-42.055e-1446.99C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5E... [more]
cey-42.055e-1446.99C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5E... [more]
cey-38.834e-1448.78C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91... [more]
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BLAST of Y box protein-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
yps1.299e-1553.66gene:FBgn0022959 transcript:FBtr0305992[more]
yps1.350e-1553.66gene:FBgn0022959 transcript:FBtr0076027[more]
lin-281.551e-836.99gene:FBgn0035626 transcript:FBtr0077090[more]
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BLAST of Y box protein-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ybx15.993e-1751.19Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
ybx15.993e-1751.19Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
ybx17.805e-1751.19Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
lin28a8.063e-1134.38lin-28 homolog A (C. elegans) [Source:NCBI gene;Ac... [more]
lin28a1.393e-1034.38lin-28 homolog A (C. elegans) [Source:NCBI gene;Ac... [more]
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BLAST of Y box protein-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ybx39.357e-1750.00Y-box binding protein 3 [Source:NCBI gene;Acc:5485... [more]
hmgcs11.461e-1651.193-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:... [more]
hmgcs11.003e-1550.603-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:... [more]
lin28b2.705e-1139.24lin-28 homolog B [Source:NCBI gene;Acc:100216028][more]
lin28b2.912e-1139.24lin-28 homolog B [Source:NCBI gene;Acc:100216028][more]
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BLAST of Y box protein-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Ybx21.246e-1651.14Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372... [more]
Ybx11.247e-1651.19Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146][more]
Ybx31.789e-1650.00Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670... [more]
Ybx22.510e-1651.14Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372... [more]
Ybx33.134e-1650.00Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670... [more]
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BLAST of Y box protein-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P41824|YBOXH_APLCA3.059e-1852.08Y-box factor homolog OS=Aplysia californica OX=650... [more]
sp|Q9Y2T7|YBOX2_HUMAN9.351e-1749.47Y-box-binding protein 2 OS=Homo sapiens OX=9606 GN... [more]
sp|P21573|YBOX1_XENLA3.424e-1651.19Y-box-binding protein 1 OS=Xenopus laevis OX=8355 ... [more]
sp|P45441|YBX2B_XENLA3.689e-1651.19Y-box-binding protein 2-B OS=Xenopus laevis OX=835... [more]
sp|B5DE31|YBOX1_DANRE4.524e-1651.19Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=... [more]
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BLAST of Y box protein-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
I1ZIB02.092e-53100.00Y box protein-1 (Fragment) OS=Schmidtea mediterran... [more]
A0A565DLG51.261e-1956.32Cold shock protein (Fragment) OS=Echiniscoides sig... [more]
A0A3M7PA908.285e-1960.24Y-box factor-like protein OS=Brachionus plicatilis... [more]
A7S4751.124e-1854.74Predicted protein (Fragment) OS=Nematostella vecte... [more]
A0A261AUY12.460e-1860.71CSD_1 domain-containing protein (Fragment) OS=Caen... [more]
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BLAST of Y box protein-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ybx11.476e-1651.19Y-box binding protein 1 [Source:NCBI gene;Acc:1030... [more]
YBX26.769e-1548.86Y-box-binding protein 2-A-like [Source:NCBI gene;A... [more]
YBX21.127e-1448.86Y-box-binding protein 2-A-like [Source:NCBI gene;A... [more]
LIN28B2.477e-1139.24protein lin-28 homolog A [Source:NCBI gene;Acc:103... [more]
LIN28B2.591e-1139.24protein lin-28 homolog A [Source:NCBI gene;Acc:103... [more]
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BLAST of Y box protein-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Y box protein-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Y box protein-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO414691.554e-2254.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO447037.640e-1046.05Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Y box protein-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ybx12.374e-1651.19Y-box binding protein 1 [Source:NCBI gene;Acc:1000... [more]
ENSORLT00000007880.21.966e-1548.86Y-box binding protein 2 [Source:NCBI gene;Acc:1000... [more]
ENSORLT00000007875.22.227e-1548.86Y-box binding protein 2 [Source:NCBI gene;Acc:1000... [more]
lin28b8.480e-1337.37lin-28 homolog B [Source:NCBI gene;Acc:101160951][more]
lin28b1.179e-1237.37lin-28 homolog B [Source:NCBI gene;Acc:101160951][more]
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BLAST of Y box protein-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000058066.11.956e-57100.00SMESG000058066.1[more]
SMESG000058043.12.588e-4382.29SMESG000058043.1[more]
SMESG000058039.12.036e-4179.17SMESG000058039.1[more]
SMESG000073546.11.162e-3470.33SMESG000073546.1[more]
SMESG000078868.11.594e-3467.74SMESG000078868.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021386 ID=SMED30021386|Name=Y box protein-1|organism=Schmidtea mediterranea sexual|type=transcript|length=2937bp
CTAAAAACTATTTACTAAAATTTATACCAAAACAAAGAAACTTAAATAAA
ACTTGATTAAACTAACTTAACATTTTGTTTATATACTTATATAATTACAA
TAACAATAAATTCAATTTAATTTATAATGACTGCCTCACAAGTTACTGGT
CACGTCAAGTGGTTTAGTTCGAAAAATGGATATGGTTTCATCAGTGTTGA
CGATGATAACAATTCTAAGGACATCTTTGTTCACCATTCGTCAATTACTG
CAAACAATGCCACTTCCCTAGCTGATGGCGAAGAAGTCCTTTTTGATATA
GTTCAAGGAGCTAAAGGTCTAGAAGCAAGAAATGTGACAGGGCCTAATGG
TGGTGATGTCATTGGTGGTAAACCATACGAGCCAAGTGATAGATCAAATA
ATAGAGGCGATAGAGATAATTACAGAAATCAATCTTCAGGATACTCTGGT
AATGGTGGCCAAAGATATGGAGGCGGTGGACACGGAGGTTATGGCGGTGA
TGATCGTAGAAGTGGACGAGGAGGTTATGGTGGGGATGATAGACGAAGTG
GACGTGGAGGTTACGGAGGTGGAGATGACAGGAGAGGTGGTCGCGGAGGA
TATGGTGGATATGGAGGAGATAGAAGACGTGATCAAGACGATAGTTATTA
ATGTAATATGAATTATATATGTCGATTTGTACAATACTTATGAAAACACG
ACTTTACGTTTTTGCGTTGTTTTATAAATCAAATCATGATTCAATTAACG
GAATTTCGATTCATAAGTATTTGAAAGTGTTCTATGTACTGTAGGTTAAT
ATTTAATAAATTTGTGTATTTCATTTCAATATAAATTTTGACCACCAAAA
AAAAAAAAAAAAAAAAAANCTTTTGAAAACAATAGAGTAGCTCGAGAGGA
AAATCCAACATATCCTAATTAAGTCCCATGGGACATAATACATGTGCAGT
AGGCAGAGCAACCATGTAACATGCATGGGATGTTAGAACCATCCCTATGG
ATGTGAGGAACACACAGACCTGCCCATGACTTCTGGTTTCAGATGCTAGA
AGTTGTCAGAATGGGGTATAGAAAGCTGTTCAGTACAACTGGGGCTCTGT
AAATAAGGGGTGGTATATTCAACACAAAGTGCAGTGTCAGTTGCATATCT
GAATGCGTTCGCGTAAGTACGTGATGTCACTGGAGGGTAAAGAGCAAAGA
ATCATAAAGGCTTCAACTGCGCTATTCTTGAGTCACTGAATTTGGTTCCA
GAACCTAACGAGACCAAAAAAGCAAAAAAGACACACATACAGAAAAAAAT
CTGCCTCGATGAATAGCAAAATACTCCCCAAAGGAGAAATTGACCTTATT
AGCTAATTGTGGTGTTGGAGTATCTCATCTCGCAGAGCGGCGTGTCGAGA
GCCAATGTGATGCCGGCTGCGTGGGGCACGGCAGCCCGGTGGGAGGGCGG
CTGCGTGCTCACAGGCTGGGAAGCTCCGAGCTTGCTGAGCTGCAGTCTCC
CAGCCTGGAAAGCCCTTTGAAAACAGAATTCCTCAAATTTGAAAATGCCT
TAAAAATGGTGTAATAGCTGGCTATCTTTCGAAACACAGCTTGACAAAGA
ACTCCTCTAATTTTATGAGAGAAAATAAATCATTAGATATCCACTCTTGG
AATGATTGATTTTTATTATTTTGTTGCAGATTTTGGGAACGCTTTCACTC
GGGGAGACAATAGTTTCATACTTTAATAACACTAACCAGCTATTATAGTT
CAAGGAAATGTTGCAGCGATACCAAATTTATCATCCTATGTCTTTAATAC
ACATGCTTTAGATAATATATTGCAGATATACACTACAACTGTTCAGACTG
TACTTGAGCAGTTACATATATATGGGAAAACTGTGGTCTGCTGGTGTCTG
ATATTTCAAAGCTTTTTGTACGTNNANNNTNTNNNGATNTNAGAANATNN
NAANANNNNNGATTGCAGGGGCAGTTCATCCCCCCCATCTTCTTTTTCAG
ATCTCTTCAGGTTGGTTGATGATTCTAATGTTTTTGGTGTTAAAAAAAAT
ATTATTTTTGAAAAGCTTTTATAATGCAAAGAAGTAAGCCTCTTCCCAGC
CTCGGGATGCTCCTGGGCTGTTGCTAGAGGCAGCACCCTGCACTTGAATT
GATACCGGTCTGCTGATTATTTCTGTTCCACTTACATTTTAGGGGCGATA
TTGATCGTTACTGAAAGGAAACACCTTAAAACTCTAAAANGTGCTGCATT
TGGCCCTTGGATTTTAGTTTTGAAATGGGAATTATTTGATGAACGATCCG
CATTTCCCCCCGGTGCTGTGTGTTTACACAGGGTTTCATCATTGGTTCAG
ATGCCTCTTTCCAGCTCGGTCCCATGCAAGAAGTTCAAGAAATTGGTTTT
GCAGATACCAAGTGAGGAAAATCTTTCACTTTAGCCTAGTTGTACTAAAG
CCTTAACTTTTCACAAGCCTATAAGCTGTATCATTAAGTTCATCTTGATC
ATTTATCAGCTTCTTAAATGGCGCTTTATTGCTCTTAATTTATTGTATGA
GGACATATTTACCCCTCATCTTCAGATGTTTGCAAAGACTATCTTTAAAG
NAAGATAAATAAATAAAGCACTAATTCATTGAATATGTCACTTTTGGTAT
TCATTATACAAAAACTATGATCATTTTTTTTTTNCATTTGCTGAGTCACC
TCTTGGTCCTTTTTATTGACTNCTGTCCAAGCAGAACTGAANNNTNNGAN
NNNNGNTATTAAAACACTATTTAATGTAAAATATTTTACTTGTCATTCAG
ATATGTAAATCTTCTATGTCCTTTCCTCTGTTCTGTACATTTAATGTACA
TATTTCTGTCTCGCGTGATTTGTATATTTCACTGGTTTTTTTTTTTTTAA
AGAAAGGATTATACCATAATGGAAGATAGACTATAAA
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protein sequence of SMED30021386-orf-1

>SMED30021386-orf-1 ID=SMED30021386-orf-1|Name=SMED30021386-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=175bp
MTASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLAD
GEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNRGDRDNYR
NQSSGYSGNGGQRYGGGGHGGYGGDDRRSGRGGYGGDDRRSGRGGYGGGD
DRRGGRGGYGGYGGDRRRDQDDSY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000039gamma neoblast
PLANA:0000418head
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR002059CSP_DNA-bd
IPR011129CSD
IPR012340NA-bd_OB-fold
Vocabulary: biological process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 46..64
score: 48.31
coord: 8..23
score: 61.24
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 7..72
e-value: 2.3E-23
score: 81.8
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 6..72
e-value: 6.10936E-22
score: 81.8562
IPR011129Cold shock domainSMARTSM00357csp_8coord: 7..73
e-value: 5.1E-23
score: 92.5
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 1..82
e-value: 3.9E-27
score: 96.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..150
NoneNo IPR availablePANTHERPTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINScoord: 3..167
NoneNo IPR availablePANTHERPTHR11544:SF60LD37574Pcoord: 3..167
NoneNo IPR availablePROSITEPS51857CSD_2coord: 5..72
score: 27.33
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 4..72