28S ribosomal protein S18b mitochondrial

Overview
Name28S ribosomal protein S18b mitochondrial
Smed IDSMED30021287
Length (bp)839
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 28S ribosomal protein S18b mitochondrial (SMED30021287) t-SNE clustered cells

Violin plots show distribution of expression levels for 28S ribosomal protein S18b mitochondrial (SMED30021287) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 28S ribosomal protein S18b mitochondrial (SMED30021287) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 28S ribosomal protein S18b mitochondrial (SMED30021287) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30021287

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
neoblastSMED30021287SMESG000039826.1 dd_Smed_v4_3535_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Human
Match: MRPS18B (mitochondrial ribosomal protein S18B [Source:HGNC Symbol;Acc:HGNC:14516])

HSP 1 Score: 94.3597 bits (233), Expect = 2.463e-22
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIP 582
            YL+S EY E Y   PVW  YRRN KG  PP++ R+ C+    +   + CPICRD+ L  D+RN  LL+QFV   TGI F    T +C+ Q++ L   ++ A   GLL   IP
Sbjct:   58 YLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Human
Match: MRPS18B (mitochondrial ribosomal protein S18B [Source:HGNC Symbol;Acc:HGNC:14516])

HSP 1 Score: 94.3597 bits (233), Expect = 2.463e-22
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIP 582
            YL+S EY E Y   PVW  YRRN KG  PP++ R+ C+    +   + CPICRD+ L  D+RN  LL+QFV   TGI F    T +C+ Q++ L   ++ A   GLL   IP
Sbjct:   58 YLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Human
Match: MRPS18B (mitochondrial ribosomal protein S18B [Source:HGNC Symbol;Acc:HGNC:14516])

HSP 1 Score: 94.3597 bits (233), Expect = 2.463e-22
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIP 582
            YL+S EY E Y   PVW  YRRN KG  PP++ R+ C+    +   + CPICRD+ L  D+RN  LL+QFV   TGI F    T +C+ Q++ L   ++ A   GLL   IP
Sbjct:   58 YLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Human
Match: MRPS18B (mitochondrial ribosomal protein S18B [Source:HGNC Symbol;Acc:HGNC:14516])

HSP 1 Score: 94.3597 bits (233), Expect = 2.463e-22
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIP 582
            YL+S EY E Y   PVW  YRRN KG  PP++ R+ C+    +   + CPICRD+ L  D+RN  LL+QFV   TGI F    T +C+ Q++ L   ++ A   GLL   IP
Sbjct:   58 YLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Human
Match: MRPS18B (mitochondrial ribosomal protein S18B [Source:HGNC Symbol;Acc:HGNC:14516])

HSP 1 Score: 94.3597 bits (233), Expect = 2.463e-22
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIP 582
            YL+S EY E Y   PVW  YRRN KG  PP++ R+ C+    +   + CPICRD+ L  D+RN  LL+QFV   TGI F    T +C+ Q++ L   ++ A   GLL   IP
Sbjct:   58 YLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Celegans
Match: mrps-18B (Mitochondrial Ribosomal Protein, Small [Source:UniProtKB/TrEMBL;Acc:Q22470])

HSP 1 Score: 90.1225 bits (222), Expect = 2.469e-21
Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = 1 
Query:  229 VNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHF---PPKKLRRNCV-YFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYHQLPPE 630
            +   I Y+KSR Y+E YK  P++ +Y+RN KG     PP +L   C+   G  +  HACP+CRD +L FDYRN  L++QF+   T  P    K+ LC  Q   L   L  A + G +   +  R +DY ++Y     E
Sbjct:   54 IAEQISYMKSRGYAEAYKGLPIYRWYKRNIKGQSKLQPPPRL--FCIDKHGRFNLNHACPVCRDEYLYFDYRNPGLIEQFLADGTDQPIDILKSGLCREQYTLLRAQLLKAKEHGTITFGVEFRNFDYRQWYKSWTDE 189
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Fly
Match: mRpS18B (gene:FBgn0032849 transcript:FBtr0081338)

HSP 1 Score: 129.798 bits (325), Expect = 1.614e-36
Identity = 77/205 (37.56%), Postives = 111/205 (54.15%), Query Frame = 1 
Query:   40 IIPFAKCMINIKINPILRN----ISNSTSLFDKAEKMEK---AKAFQKIMDDKYPDIRIAYGGMP-----YEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYHQ 618
            ++P A+  I I +  I RN    +  +++L  KAE   +   A A +   +D       A G  P      +P+ V TSI YLKS  Y + Y ++ VW  YRRN KG + P+K R+ C+    +ST + CPICRD +LV DYRNT+LL+QF+   +G     +KT LC   +  L+  ++ A   G L   +P R YDY+EYY Q
Sbjct:    1 MLPIAR-GIYIGLVNITRNSRGALHTASALRCKAETSTEENNAAATEGEGEDN------ASGSAPDPKDRSKPIPVETSIRYLKSAAYKQTYGEDFVWTQYRRNHKGMYAPRKTRKTCIRQNRISTGNPCPICRDEYLVLDYRNTELLEQFISPHSGDVLSYSKTGLCQKSHLRLMVAVQQARDSGYLTYDVPFREYDYSEYYGQ 198
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Fly
Match: mRpS18B (gene:FBgn0032849 transcript:FBtr0081339)

HSP 1 Score: 129.798 bits (325), Expect = 1.614e-36
Identity = 77/205 (37.56%), Postives = 111/205 (54.15%), Query Frame = 1 
Query:   40 IIPFAKCMINIKINPILRN----ISNSTSLFDKAEKMEK---AKAFQKIMDDKYPDIRIAYGGMP-----YEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYHQ 618
            ++P A+  I I +  I RN    +  +++L  KAE   +   A A +   +D       A G  P      +P+ V TSI YLKS  Y + Y ++ VW  YRRN KG + P+K R+ C+    +ST + CPICRD +LV DYRNT+LL+QF+   +G     +KT LC   +  L+  ++ A   G L   +P R YDY+EYY Q
Sbjct:    1 MLPIAR-GIYIGLVNITRNSRGALHTASALRCKAETSTEENNAAATEGEGEDN------ASGSAPDPKDRSKPIPVETSIRYLKSAAYKQTYGEDFVWTQYRRNHKGMYAPRKTRKTCIRQNRISTGNPCPICRDEYLVLDYRNTELLEQFISPHSGDVLSYSKTGLCQKSHLRLMVAVQQARDSGYLTYDVPFREYDYSEYYGQ 198
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Zebrafish
Match: mrps18b (mitochondrial ribosomal protein S18B [Source:ZFIN;Acc:ZDB-GENE-050417-278])

HSP 1 Score: 95.5153 bits (236), Expect = 4.190e-23
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:  229 VNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQ 570
             +T   YLKS EY E Y  +PVW  YRRN KG  PP+K R+ C+  G     + CPICRD +++  Y+N +LLQQF   +TG+      T +C+ Q + L   +E A   GLL+
Sbjct:   66 ADTPWEYLKSEEYIERYGTKPVWTNYRRNHKGGIPPQKTRKTCIR-GDKKCANPCPICRDPNIIIHYKNVNLLQQFFCPETGVVHDPTVTGVCMKQQKLLSKAIETAKDFGLLR 178
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Xenopus
Match: ENSXETT00000017678.1 (mitochondrial ribosomal protein S18B [Source:NCBI gene;Acc:100489063])

HSP 1 Score: 92.4337 bits (228), Expect = 1.818e-22
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 1 
Query:  250 LKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEY 609
            + S EY + Y  + VW  YRRN KG  PP+K R+ CV  G  +  + CPICRD  L  +YRN  LLQQF+   TG  +   KT +C+ Q + L+  +  A   GLL   +P  +  + +Y
Sbjct:    1 MNSEEYLQQYGQKSVWADYRRNHKGPIPPQKTRKTCVRGGK-TCGNPCPICRDQKLGLNYRNVKLLQQFICPHTGTVYDPTKTGVCMKQQKALVKAITEATDHGLLPAHVPYIVLPHEDY 119
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Mouse
Match: Mrps18b (mitochondrial ribosomal protein S18B [Source:MGI Symbol;Acc:MGI:1914223])

HSP 1 Score: 94.3597 bits (233), Expect = 1.927e-22
Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIP 582
            YL S EY   Y   PVW  YRRN KG  PP++ R+ C+    ++  + CPICRD+ L  D+RN  LL+QFV   TGI F    T +C+ Q++ L   ++ A + GLL   +P
Sbjct:   56 YLDSEEYHNRYGSRPVWADYRRNHKGGVPPQRTRKTCIRNNKVA-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARECGLLSYYVP 166
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Mouse
Match: Mrps18b (mitochondrial ribosomal protein S18B [Source:MGI Symbol;Acc:MGI:1914223])

HSP 1 Score: 78.5666 bits (192), Expect = 2.961e-17
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPF 483
            YL S EY   Y   PVW  YRRN KG  PP++ R+ C+    ++  + CPICRD+ L  D+RN  LL+QFV   TGI F
Sbjct:   45 YLDSEEYHNRYGSRPVWADYRRNHKGGVPPQRTRKTCIRNNKVA-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIF 122
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Mouse
Match: Mrps18b (mitochondrial ribosomal protein S18B [Source:MGI Symbol;Acc:MGI:1914223])

HSP 1 Score: 61.6178 bits (148), Expect = 1.012e-11
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNT 438
            YL S EY   Y   PVW  YRRN KG  PP++ R+ C+    ++  + CPICRD+ L  D+R +
Sbjct:   48 YLDSEEYHNRYGSRPVWADYRRNHKGGVPPQRTRKTCIRNNKVAG-NPCPICRDHKLHVDFRGS 110
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Mouse
Match: Mrps18b (mitochondrial ribosomal protein S18B [Source:MGI Symbol;Acc:MGI:1914223])

HSP 1 Score: 61.2326 bits (147), Expect = 1.087e-11
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNT 438
            YL S EY   Y   PVW  YRRN KG  PP++ R+ C+    ++  + CPICRD+ L  D+R +
Sbjct:   43 YLDSEEYHNRYGSRPVWADYRRNHKGGVPPQRTRKTCIRNNKVAG-NPCPICRDHKLHVDFRGS 105
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. UniProt/SwissProt
Match: sp|Q5TM62|RT18B_MACMU (28S ribosomal protein S18b, mitochondrial OS=Macaca mulatta OX=9544 GN=MRPS18B PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.376e-22
Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIP 582
            YL+S EY E Y   PVW  YRRN KG  PP++ R+ C+  G     + CPICRD+ L  D+RN  LL+QFV   TGI F +  T +C+ Q++ L   ++ A   GLL   IP
Sbjct:   58 YLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIR-GNKVAGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFHSLYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. UniProt/SwissProt
Match: sp|Q767K8|RT18B_PIG (28S ribosomal protein S18b, mitochondrial OS=Sus scrofa OX=9823 GN=MRPS18B PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.737e-22
Identity = 55/138 (39.86%), Postives = 73/138 (52.90%), Query Frame = 1 
Query:  169 DDKYPDIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIP 582
            DD  P + I+    PY+    +    YL S EY   Y   PVW  YRRN KG  PP++ R+ C+  G     + CPICRD  L  D+RN  LL+QFV   TGI F    T +C+ Q++ L   ++ A   GLL+  IP
Sbjct:   40 DDSLPQVPIS----PYK----DEPWKYLDSEEYQNRYGSRPVWADYRRNHKGGIPPQRTRKMCIR-GNKVAGNPCPICRDQKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLLRYHIP 168
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. UniProt/SwissProt
Match: sp|Q1XHY1|RT18B_PANTR (28S ribosomal protein S18b, mitochondrial OS=Pan troglodytes OX=9598 GN=MRPS18B PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.584e-22
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIP 582
            YL+S EY E Y   PVW  YRRN KG  PP++ R+ C+    +   + CPICRD+ L  D+RN  LL+QFV   TGI F    T +C+ Q++ L   ++ A   GLL   IP
Sbjct:   58 YLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. UniProt/SwissProt
Match: sp|Q9Y676|RT18B_HUMAN (28S ribosomal protein S18b, mitochondrial OS=Homo sapiens OX=9606 GN=MRPS18B PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.183e-21
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIP 582
            YL+S EY E Y   PVW  YRRN KG  PP++ R+ C+    +   + CPICRD+ L  D+RN  LL+QFV   TGI F    T +C+ Q++ L   ++ A   GLL   IP
Sbjct:   58 YLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. UniProt/SwissProt
Match: sp|Q99N84|RT18B_MOUSE (28S ribosomal protein S18b, mitochondrial OS=Mus musculus OX=10090 GN=Mrps18b PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.348e-21
Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIP 582
            YL S EY   Y   PVW  YRRN KG  PP++ R+ C+    ++  + CPICRD+ L  D+RN  LL+QFV   TGI F    T +C+ Q++ L   ++ A + GLL   +P
Sbjct:   56 YLDSEEYHNRYGSRPVWADYRRNHKGGVPPQRTRKTCIRNNKVA-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARECGLLSYYVP 166
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. TrEMBL
Match: A0A4E0R1X7 (Putative mitochondrial ribosomal protein OS=Fasciola hepatica OX=6192 GN=D915_008733 PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.585e-45
Identity = 102/279 (36.56%), Postives = 139/279 (49.82%), Query Frame = 1 
Query:   40 IIPFAKCMINIKINPILRNISNSTSLFDKAEKMEKAK---AFQKIMDDKYPDIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYHQLPPE-------------------IHEDSV-PYTTTMEVLPNAV--------------RLFSKSDEELKIERPSVPNKYALLEK 765
            I  FA+C    K  PI  + S +    D  E  E  K   +      D    +R    G  Y PVD+ TS+ Y+ S  Y  +Y+ +PVWFYYRRNFKGHFPP K R+NCV    L T + CPICRD +LV D+RNT LL QF++  +      + T LC HQ++ LL  +E A  +G ++  +P  LYDY +YY  L P+                   I+E +V P TT +  LP AV              R +  S+ +    RP VPN+Y + E+
Sbjct:   59 IANFARCYATAKSKPIRADTSKT----DDTESPETGKLNASQDTTKSDLMETVRKNSRGKLYNPVDLATSMDYMNSTVYHSIYRSKPVWFYYRRNFKGHFPPPKTRKNCVIGHKLITSNPCPICRDEYLVIDFRNTKLLTQFINPISSDILEPSTTGLCQHQHKRLLVEIEKARDVGTIEMWLPFYLYDYRDYYTDLEPDQLEALLKASGYMPPANNGSIYEPTVNPSTTRLNELPPAVQDILLRSSGTIPHAREYVASEAKTDWSRPRVPNRYKMEEE 333
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. TrEMBL
Match: A0A5J4NTR9 (Small subunit ribosomal protein S18b, mitochondrial OS=Paragonimus westermani OX=34504 GN=DEA37_0014062 PE=4 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.467e-44
Identity = 90/229 (39.30%), Postives = 128/229 (55.90%), Query Frame = 1 
Query:  187 IRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYHQLPPE---------------IHED-------SVPYTT---------------TMEVLPNAVRLFSKSDEELKIERPSVPNKYALLE 762
            +R  Y G PY PVD+ TS+ Y+ S  Y   Y+ +PVWFYYRRNFKGHF P K R NCV   LL + + CPICRD  LV DYRNT LL+QF++  +      ++T LC HQ++ L+  +E A  LG ++  +P  LYDY++YY+ LPPE               I ++       S P+++               T+  +P+A    S+   +++IERP VPN+Y + E
Sbjct:   98 LRKNYHGKPYNPVDLATSLDYVNSEVYESTYRGKPVWFYYRRNFKGHFAPPKTRPNCVMSKLLISSNPCPICRDEFLVLDYRNTKLLKQFINPISAKILEPSQTGLCQHQHKKLVLEIEKAQDLGTIEMWLPFHLYDYSDYYNYLPPEQLGQLIQASGCASNLIMDETTDGSLSSGPFSSDDIASLPVHLQDLLRTLHTIPHASDSLSEP-AKVEIERPKVPNRYKMEE 325
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. TrEMBL
Match: A0A4S2LGA5 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007354 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.564e-41
Identity = 72/150 (48.00%), Postives = 98/150 (65.33%), Query Frame = 1 
Query:  181 PDIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYHQLPPE 630
            P IR  Y G  Y PVD++TS+ Y+ S  Y   Y+ +PVWFYYRRN++GHFPP + R NCV    L + + CPICRD +L+ DYRNT+LL+QF++  T      ++T LC HQ++ LL  +  A  LG ++  +P  LYDY+EYY  LP E
Sbjct:   81 PSIRKNYKGKLYTPVDLSTSLDYMNSEVYLNTYQGKPVWFYYRRNYEGHFPPPRTRPNCVVAKKLVSSNPCPICRDEYLILDYRNTELLRQFLNPITLEILETSRTGLCQHQHKKLLLEIAKAQDLGTIETWLPFHLYDYSEYYSYLPKE 230
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. TrEMBL
Match: A0A5K4EZA8 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.417e-40
Identity = 82/226 (36.28%), Postives = 125/226 (55.31%), Query Frame = 1 
Query:  163 IMDDKYPDIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYHQLPPE-------------IHEDSVPYTTTMEVLPNAVRLFSKSDE-------------ELKIERPSVPNKYALLE 762
            I +  + +IR  Y G PY+  D+ TSI Y  S  +   YK +PVWF+YRRN+KGHFP    R+NCV+FG   + + CPICRD +LV  +R+ +LL+QF++  T   FP +KT +C HQ + L   +E A  LGL+Q  +P  LY+Y +YY  LP +              H+++V  +  +  LP  ++   K+++             E+ I+RP V  +Y + E
Sbjct:   45 IKESPHTNIRKNYKGKPYKQADLATSIEYFNSDVFRNTYKGKPVWFHYRRNYKGHFPSSVTRKNCVHFGKYVSSNPCPICRDEYLVLSHRHIELLKQFINPDTLEIFPLSKTGICRHQYKILQLEVEKASDLGLIQTWLPFYLYNYHDYYDYLPKDQLNELLKINNSHLTHQNAVISSNDIASLPLDIQEILKTNQSIPHTTEFTIQLPEINIDRPKVNKRYQMEE 270
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. TrEMBL
Match: G7YHZ3 (28S ribosomal protein S18b mitochondrial OS=Clonorchis sinensis OX=79923 GN=CLF_108384 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.870e-40
Identity = 73/149 (48.99%), Postives = 101/149 (67.79%), Query Frame = 1 
Query:  184 DIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYHQLPPE 630
            ++R  Y G  Y PVD++TS+ Y+ S  Y  +Y+ +PVWFYYRRNFKGHFPP + R NCV   L+S+ + CPICRD +L+ DYRNT+LL+QF++  T      ++T LC HQ++ LL  +  A  LG ++  +P  LYDY+EYY  LP E
Sbjct:   82 NLRKNYKGKLYTPVDLSTSLDYMNSEVYLNIYQGKPVWFYYRRNFKGHFPPPRTRPNCVVSWLVSS-NPCPICRDEYLILDYRNTELLRQFLNPITLEILETSRTGLCQHQHKKLLLEIAKAQDLGTIETWLPFHLYDYSEYYSYLPKE 229
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Cavefish
Match: mrps18b (mitochondrial ribosomal protein S18B [Source:NCBI gene;Acc:103044234])

HSP 1 Score: 101.679 bits (252), Expect = 2.424e-25
Identity = 59/177 (33.33%), Postives = 89/177 (50.28%), Query Frame = 1 
Query:   76 INPILRNISNSTSLFDKAEKMEKAKAFQKIMD-DKYPDIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYT 603
            I P++RN   S+ L +     +     + + D  +Y D        P++         YL+S EY E Y  +PVW  YRRN KG  PP+K R+ C+  G  +  + CPICRD +++  Y+N  LLQQF+   TG  +   +T +C+ Q + L   +E A   GL+   +P    DYT
Sbjct:   37 ITPVIRNFFYSSKLLNLESSEKNDHGVESLKDLSRYKD-------KPWK---------YLESEEYIERYGSKPVWANYRRNHKGGIPPQKTRKTCIRRGK-TCGNPCPICRDQNIIIHYQNVSLLQQFISPYTGFVYDPTRTGVCMRQQKRLNTAIETAKLHGLIPTQLP--FVDYT 194
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Sea Lamprey
Match: mrps18b (mitochondrial ribosomal protein S18B [Source:ZFIN;Acc:ZDB-GENE-050417-278])

HSP 1 Score: 90.5077 bits (223), Expect = 5.892e-22
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:  247 YLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLG 561
            YL S EY E Y + P+W  YRRN KG  PP+K R+ C+  G     + CP CRD  ++ D++N  LLQQF+    GI F  + T LC  Q++NLL  ++ A   G
Sbjct:   59 YLDSEEYIERYGEIPIWKDYRRNHKGGIPPQKTRKTCIR-GSNVCSNPCPACRDPKIIMDFKNIRLLQQFICPHQGIVFDPSLTGLCQRQHKNLLAAIKKAQDYG 162
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Nematostella
Match: EDO44265 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RW82])

HSP 1 Score: 63.929 bits (154), Expect = 4.424e-12
Identity = 34/98 (34.69%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:  286 EPVWFYYRRNFKGHFPPKKLRRNCVYFG-LLSTKHACPICR---DNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLL 567
            +P W  YRRN KG  PPK+ R  C      L T++ CP+CR   + +     ++   L QF+   TG      KT +C  Q + LL  +E A   G L
Sbjct:  118 KPAWAGYRRNHKGQIPPKRTRLRCTTIDKQLLTQNPCPVCRIRVEKNYEISSKDVSFLTQFMSPHTGEILHTGKTGVCRQQQKKLLHAIEEAQDKGYL 215
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Medaka
Match: mrps18b (mitochondrial ribosomal protein S18B [Source:NCBI gene;Acc:101172345])

HSP 1 Score: 83.5741 bits (205), Expect = 8.445e-19
Identity = 48/144 (33.33%), Postives = 72/144 (50.00%), Query Frame = 1 
Query:  277 YKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLY---DYTEYYHQL-----PPEIHEDSVPYTTTMEVLPNA 684
            Y + PVW  YRRN KG  PP+K RR C+  G     + CP+CRD++L+   +N  LLQQF+   TG  +   +T +C+ Q + L   +  A   G L   IP   +   DY+  +  +     PP ++     Y    E+ P+A
Sbjct:   66 YGNGPVWAGYRRNHKGGIPPQKTRRTCIR-GDKVCGNPCPVCRDSNLIVHPQNVKLLQQFMSPHTGAVYDPTRTGVCMKQQKKLNEAINTAQDQGTLPFQIPHVEFSGDDYSNSHDAVGFTPPPPCLNSGETWYKWYGEMTPDA 208
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Medaka
Match: mrps18b (mitochondrial ribosomal protein S18B [Source:NCBI gene;Acc:101172345])

HSP 1 Score: 83.1889 bits (204), Expect = 1.344e-18
Identity = 48/144 (33.33%), Postives = 72/144 (50.00%), Query Frame = 1 
Query:  277 YKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLY---DYTEYYHQL-----PPEIHEDSVPYTTTMEVLPNA 684
            Y + PVW  YRRN KG  PP+K RR C+  G     + CP+CRD++L+   +N  LLQQF+   TG  +   +T +C+ Q + L   +  A   G L   IP   +   DY+  +  +     PP ++     Y    E+ P+A
Sbjct:   81 YGNGPVWAGYRRNHKGGIPPQKTRRTCIR-GDKVCGNPCPVCRDSNLIVHPQNVKLLQQFMSPHTGAVYDPTRTGVCMKQQKKLNEAINTAQDQGTLPFQIPHVEFSGDDYSNSHDAVGFTPPPPCLNSGETWYKWYGEMTPDA 223
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Planmine SMEST
Match: SMESG000039826.1 (SMESG000039826.1)

HSP 1 Score: 512.686 bits (1319), Expect = 0.000e+0
Identity = 246/248 (99.19%), Postives = 247/248 (99.60%), Query Frame = 1 
Query:   28 MTLRIIPFAKCMINIKINPILRNISNSTSLFDKAEKMEKAKAFQKIMDDKYPDIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYHQLPPEIHEDSVPYTTTMEVLPNAVRLFSKSDEELKIERPSVPNKYALLEKRY 771
            MTLRI+PFAKCMINIKINPILRNISNSTSLFDKAEKMEKAKAFQKIMDDKYPDIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYY QLPPEIHEDSVPYTTTMEVLPNAVRLFSKSDEELKIERPSVPNKYALLEKRY
Sbjct:    1 MTLRIVPFAKCMINIKINPILRNISNSTSLFDKAEKMEKAKAFQKIMDDKYPDIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYPQLPPEIHEDSVPYTTTMEVLPNAVRLFSKSDEELKIERPSVPNKYALLEKRY 248
[Close]
BLAST of 28S ribosomal protein S18b mitochondrial vs. Planmine SMEST
Match: SMESG000039826.1 (SMESG000039826.1)

HSP 1 Score: 489.96 bits (1260), Expect = 1.236e-177
Identity = 236/237 (99.58%), Postives = 236/237 (99.58%), Query Frame = 1 
Query:   61 MINIKINPILRNISNSTSLFDKAEKMEKAKAFQKIMDDKYPDIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYHQLPPEIHEDSVPYTTTMEVLPNAVRLFSKSDEELKIERPSVPNKYALLEKRY 771
            MINIKINPILRNISNSTSLFDKAEKMEKAKAFQKIMDDKYPDIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYY QLPPEIHEDSVPYTTTMEVLPNAVRLFSKSDEELKIERPSVPNKYALLEKRY
Sbjct:    1 MINIKINPILRNISNSTSLFDKAEKMEKAKAFQKIMDDKYPDIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGHFPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGIPFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYPQLPPEIHEDSVPYTTTMEVLPNAVRLFSKSDEELKIERPSVPNKYALLEKRY 237
The following BLAST results are available for this feature:
BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
MRPS18B2.463e-2243.75mitochondrial ribosomal protein S18B [Source:HGNC ... [more]
MRPS18B2.463e-2243.75mitochondrial ribosomal protein S18B [Source:HGNC ... [more]
MRPS18B2.463e-2243.75mitochondrial ribosomal protein S18B [Source:HGNC ... [more]
MRPS18B2.463e-2243.75mitochondrial ribosomal protein S18B [Source:HGNC ... [more]
MRPS18B2.463e-2243.75mitochondrial ribosomal protein S18B [Source:HGNC ... [more]
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BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps-18B2.469e-2136.96Mitochondrial Ribosomal Protein, Small [Source:Un... [more]
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BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mRpS18B1.614e-3637.56gene:FBgn0032849 transcript:FBtr0081338[more]
mRpS18B1.614e-3637.56gene:FBgn0032849 transcript:FBtr0081339[more]
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BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps18b4.190e-2342.11mitochondrial ribosomal protein S18B [Source:ZFIN;... [more]
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BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSXETT00000017678.11.818e-2239.17mitochondrial ribosomal protein S18B [Source:NCBI ... [more]
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BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Mrps18b1.927e-2241.96mitochondrial ribosomal protein S18B [Source:MGI S... [more]
Mrps18b2.961e-1748.10mitochondrial ribosomal protein S18B [Source:MGI S... [more]
Mrps18b1.012e-1143.75mitochondrial ribosomal protein S18B [Source:MGI S... [more]
Mrps18b1.087e-1143.75mitochondrial ribosomal protein S18B [Source:MGI S... [more]
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BLAST of 28S ribosomal protein S18b mitochondrial vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q5TM62|RT18B_MACMU2.376e-2244.6428S ribosomal protein S18b, mitochondrial OS=Macac... [more]
sp|Q767K8|RT18B_PIG4.737e-2239.8628S ribosomal protein S18b, mitochondrial OS=Sus s... [more]
sp|Q1XHY1|RT18B_PANTR6.584e-2243.7528S ribosomal protein S18b, mitochondrial OS=Pan t... [more]
sp|Q9Y676|RT18B_HUMAN1.183e-2143.7528S ribosomal protein S18b, mitochondrial OS=Homo ... [more]
sp|Q99N84|RT18B_MOUSE1.348e-2141.9628S ribosomal protein S18b, mitochondrial OS=Mus m... [more]
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BLAST of 28S ribosomal protein S18b mitochondrial vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4E0R1X72.585e-4536.56Putative mitochondrial ribosomal protein OS=Fascio... [more]
A0A5J4NTR91.467e-4439.30Small subunit ribosomal protein S18b, mitochondria... [more]
A0A4S2LGA51.564e-4148.00Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A5K4EZA81.417e-4036.28Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
G7YHZ32.870e-4048.9928S ribosomal protein S18b mitochondrial OS=Clonor... [more]
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BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps18b2.424e-2533.33mitochondrial ribosomal protein S18B [Source:NCBI ... [more]
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BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps18b5.892e-2242.86mitochondrial ribosomal protein S18B [Source:ZFIN;... [more]
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BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO442654.424e-1234.69Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of 28S ribosomal protein S18b mitochondrial vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mrps18b8.445e-1933.33mitochondrial ribosomal protein S18B [Source:NCBI ... [more]
mrps18b1.344e-1833.33mitochondrial ribosomal protein S18B [Source:NCBI ... [more]
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BLAST of 28S ribosomal protein S18b mitochondrial vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000039826.10.000e+099.19SMESG000039826.1[more]
SMESG000039826.11.236e-17799.58SMESG000039826.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021287 ID=SMED30021287|Name=28S ribosomal protein S18b mitochondrial|organism=Schmidtea mediterranea sexual|type=transcript|length=839bp
TAAACATTCAATTTGAAATTTTTATTAATGACTTTGCGAATTATTCCATT
TGCAAAATGTATGATAAATATCAAAATAAATCCAATTTTAAGAAACATTA
GTAATTCAACATCACTTTTTGATAAGGCTGAAAAAATGGAAAAAGCTAAG
GCTTTTCAAAAAATAATGGATGATAAATATCCTGATATTCGAATCGCTTA
TGGAGGAATGCCTTATGAGCCTGTTGATGTAAATACTAGTATATTATACT
TGAAATCAAGAGAATATAGTGAAGTATATAAAGACGAACCAGTTTGGTTT
TACTATCGAAGAAATTTTAAGGGGCATTTTCCACCAAAAAAATTGAGAAG
AAATTGTGTTTATTTTGGATTACTAAGTACGAAGCATGCATGTCCTATTT
GCCGGGATAATCATTTGGTCTTTGATTACAGGAATACCGATTTACTGCAA
CAATTTGTAGACCAACAAACCGGAATTCCCTTTCCAAATGCCAAAACAAA
TTTATGTCTACATCAAAACGAGAATCTTCTGTTTCATTTGGAATTGGCAT
ATCAACTGGGTCTGCTGCAGAAAAGTATACCGATTCGATTGTACGATTAC
ACTGAATATTATCACCAATTACCCCCGGAAATCCACGAGGATTCTGTACC
GTACACCACCACAATGGAAGTTCTACCGAACGCTGTTAGATTGTTTTCCA
AATCCGACGAAGAACTCAAAATTGAGCGGCCTTCTGTTCCGAATAAATAC
GCTTTATTAGAAAAGAGATATCTAGAAAAGCGAGCGGCTAAGATGAAAGC
ATTAAAATTGAATTTAACAAAAAATAAATAATTGCGGAG
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protein sequence of SMED30021287-orf-1

>SMED30021287-orf-1 ID=SMED30021287-orf-1|Name=SMED30021287-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=268bp
MTLRIIPFAKCMINIKINPILRNISNSTSLFDKAEKMEKAKAFQKIMDDK
YPDIRIAYGGMPYEPVDVNTSILYLKSREYSEVYKDEPVWFYYRRNFKGH
FPPKKLRRNCVYFGLLSTKHACPICRDNHLVFDYRNTDLLQQFVDQQTGI
PFPNAKTNLCLHQNENLLFHLELAYQLGLLQKSIPIRLYDYTEYYHQLPP
EIHEDSVPYTTTMEVLPNAVRLFSKSDEELKIERPSVPNKYALLEKRYLE
KRAAKMKALKLNLTKNK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0005739mitochondrion
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: biological process
TermDefinition
GO:0032543mitochondrial translation
GO:0006412translation
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002056medial muscle cell
Vocabulary: INTERPRO
TermDefinition
IPR040054MRPS18B
IPR036870Ribosomal_S18_sf
IPR001648Ribosomal_S18
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR04005428S ribosomal protein S18b, mitochondrialPANTHERPTHR13329MITOCHONDRIAL RIBOSOMAL PROTEIN S18Bcoord: 67..198
IPR036870Ribosomal protein S18 superfamilySUPERFAMILYSSF46911Ribosomal protein S18coord: 115..180