60S ribosomal protein L35

Overview
Name60S ribosomal protein L35
Smed IDSMED30021253
Length (bp)1602
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 60S ribosomal protein L35 (SMED30021253) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L35 (SMED30021253) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L35 (SMED30021253) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L35 (SMED30021253) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30021253

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
central nervous systemSMED30021253 dd_Smed_v4_12259_2_2dd_Smed_v4PMID:27063937
Scimone et al., 2016
whole organism asexual adult colorimetric in situ hybridization evidence
headSMED30021253 dd_Smed_v4_12259_2_2dd_Smed_v4PMID:27063937
Scimone et al., 2016
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
X1 cellSMED30021253SMESG000077214.1 SmedASXL_018653SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
neuronSMED30021253SMESG000035332.1 SMESG000031365.1 SMESG000077214.1 SMESG000075241.1 SMESG000075191.1 dd_Smed_v4_168_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
neuronSMED30021253 dd_Smed_v4_12259_2_2dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of 60S ribosomal protein L35 vs. Ensembl Human
Match: RPL35 (ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344])

HSP 1 Score: 118.627 bits (296), Expect = 3.462e-31
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRAMRR+L  +++N KT +Q R +R +P   YA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
BLAST of 60S ribosomal protein L35 vs. Ensembl Human
Match: RPL35 (ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344])

HSP 1 Score: 83.1889 bits (204), Expect = 6.174e-19
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQ 277
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYK 74          
BLAST of 60S ribosomal protein L35 vs. Ensembl Human
Match: RPL35 (ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344])

HSP 1 Score: 83.1889 bits (204), Expect = 6.174e-19
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQ 277
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYK 74          
BLAST of 60S ribosomal protein L35 vs. Ensembl Human
Match: RPL35 (ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344])

HSP 1 Score: 83.1889 bits (204), Expect = 6.174e-19
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQ 277
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYK 74          
BLAST of 60S ribosomal protein L35 vs. Ensembl Celegans
Match: rpl-35 (60S ribosomal protein L35 [Source:UniProtKB/Swiss-Prot;Acc:P34662])

HSP 1 Score: 92.8189 bits (229), Expect = 2.068e-22
Identity = 51/107 (47.66%), Postives = 75/107 (70.09%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQ 376
            M KL+   L  + K  L+K+L + KTELA LRV+KVTG   +KL KIRV+RK+IAR++TV++  QK  LR++Y   K KP  +R K TRA+RR+LT ++ + ++ +Q
Sbjct:    1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQ 107          
BLAST of 60S ribosomal protein L35 vs. Ensembl Celegans
Match: rpl-35 (60S ribosomal protein L35 [Source:UniProtKB/Swiss-Prot;Acc:P34662])

HSP 1 Score: 92.8189 bits (229), Expect = 2.068e-22
Identity = 51/107 (47.66%), Postives = 75/107 (70.09%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQ 376
            M KL+   L  + K  L+K+L + KTELA LRV+KVTG   +KL KIRV+RK+IAR++TV++  QK  LR++Y   K KP  +R K TRA+RR+LT ++ + ++ +Q
Sbjct:    1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQ 107          
BLAST of 60S ribosomal protein L35 vs. Ensembl Celegans
Match: rpl-35 (60S ribosomal protein L35 [Source:UniProtKB/Swiss-Prot;Acc:P34662])

HSP 1 Score: 92.8189 bits (229), Expect = 2.068e-22
Identity = 51/107 (47.66%), Postives = 75/107 (70.09%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQ 376
            M KL+   L  + K  L+K+L + KTELA LRV+KVTG   +KL KIRV+RK+IAR++TV++  QK  LR++Y   K KP  +R K TRA+RR+LT ++ + ++ +Q
Sbjct:    1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQ 107          
BLAST of 60S ribosomal protein L35 vs. Ensembl Fly
Match: RpL35 (gene:FBgn0029785 transcript:FBtr0070801)

HSP 1 Score: 119.783 bits (299), Expect = 5.995e-32
Identity = 62/122 (50.82%), Postives = 89/122 (72.95%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            MVK++ SEL  K+K +L KQL +LK EL  LRVAKVTG   +KL KIRV+RK+IARV  VMH KQK++LR+ ++++K KP  +R K TRA+R+ L+    N+KT+++IR    +P+  +A+K
Sbjct:    1 MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGAPSKLSKIRVVRKAIARVYIVMHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRKFAVK 122          
BLAST of 60S ribosomal protein L35 vs. Ensembl Fly
Match: RpL35 (gene:FBgn0029785 transcript:FBtr0345788)

HSP 1 Score: 119.783 bits (299), Expect = 5.995e-32
Identity = 62/122 (50.82%), Postives = 89/122 (72.95%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            MVK++ SEL  K+K +L KQL +LK EL  LRVAKVTG   +KL KIRV+RK+IARV  VMH KQK++LR+ ++++K KP  +R K TRA+R+ L+    N+KT+++IR    +P+  +A+K
Sbjct:    1 MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGAPSKLSKIRVVRKAIARVYIVMHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRKFAVK 122          
BLAST of 60S ribosomal protein L35 vs. Ensembl Fly
Match: RpL35 (gene:FBgn0029785 transcript:FBtr0070800)

HSP 1 Score: 119.783 bits (299), Expect = 5.995e-32
Identity = 62/122 (50.82%), Postives = 89/122 (72.95%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            MVK++ SEL  K+K +L KQL +LK EL  LRVAKVTG   +KL KIRV+RK+IARV  VMH KQK++LR+ ++++K KP  +R K TRA+R+ L+    N+KT+++IR    +P+  +A+K
Sbjct:    1 MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGAPSKLSKIRVVRKAIARVYIVMHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRKFAVK 122          
BLAST of 60S ribosomal protein L35 vs. Ensembl Zebrafish
Match: rpl35 (ribosomal protein L35 [Source:NCBI gene;Acc:192299])

HSP 1 Score: 110.153 bits (274), Expect = 2.654e-28
Identity = 61/122 (50.00%), Postives = 87/122 (71.31%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRA+RRQLT +++N  T +  R  R +    +A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAIRRQLTKHEENLMTKKMQRKSRLYSIRKFAVK 122          
BLAST of 60S ribosomal protein L35 vs. Ensembl Zebrafish
Match: rpl35 (ribosomal protein L35 [Source:NCBI gene;Acc:192299])

HSP 1 Score: 107.842 bits (268), Expect = 1.927e-27
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = 2
Query:   62 KLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRA+RRQLT +++N  T +  R  R +    +A+K
Sbjct:    2 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAIRRQLTKHEENLMTKKMQRKSRLYSIRKFAVK 121          
BLAST of 60S ribosomal protein L35 vs. Ensembl Xenopus
Match: has3 (hyaluronan synthase 3 [Source:Xenbase;Acc:XB-GENE-987830])

HSP 1 Score: 109.383 bits (272), Expect = 8.627e-28
Identity = 59/122 (48.36%), Postives = 87/122 (71.31%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
              K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRA+RR+L  +++  +T +Q R DR +    +A+K
Sbjct:    4 FAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEEGLRTKKQQRKDRLFSARKFAVK 125          
BLAST of 60S ribosomal protein L35 vs. Ensembl Xenopus
Match: has3 (hyaluronan synthase 3 [Source:Xenbase;Acc:XB-GENE-987830])

HSP 1 Score: 110.923 bits (276), Expect = 3.229e-27
Identity = 61/125 (48.80%), Postives = 89/125 (71.20%), Query Frame = 2
Query:   47 STKMVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            S  M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRA+RR+L  +++  +T +Q R DR +    +A+K
Sbjct:   99 SAIMAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEEGLRTKKQQRKDRLFSARKFAVK 223          
BLAST of 60S ribosomal protein L35 vs. Ensembl Mouse
Match: Gm2000 (predicted gene 2000 [Source:MGI Symbol;Acc:MGI:3780170])

HSP 1 Score: 117.472 bits (293), Expect = 7.335e-31
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRAMRR+LT +++  KT +Q R +R +P   YA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of 60S ribosomal protein L35 vs. Ensembl Mouse
Match: Rpl35 (ribosomal protein L35 [Source:MGI Symbol;Acc:MGI:1913739])

HSP 1 Score: 117.472 bits (293), Expect = 7.335e-31
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRAMRR+LT +++  KT +Q R +R +P   YA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of 60S ribosomal protein L35 vs. Ensembl Mouse
Match: Gm49368 (predicted gene, 49368 [Source:MGI Symbol;Acc:MGI:6121583])

HSP 1 Score: 48.1358 bits (113), Expect = 2.009e-6
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 2
Query:   53 KMVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLG--KIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATR 322
            +MVK++A +L  K K +L KQL  LK EL++L VAKVTG+  +KL   K  +L   + +  +   T+ + +       R+L+P   R+  TR
Sbjct:   32 EMVKIKARDLHDKKKEELLKQLDDLKVELSQLPVAKVTGSAASKLSNPKSSLLLTRLKKKTSGNSTRARSTSPWACDPRRLEPCVTRSPNTR 123          
BLAST of 60S ribosomal protein L35 vs. Ensembl Mouse
Match: Gm49368 (predicted gene, 49368 [Source:MGI Symbol;Acc:MGI:6121583])

HSP 1 Score: 51.2174 bits (121), Expect = 3.666e-6
Identity = 33/94 (35.11%), Postives = 53/94 (56.38%), Query Frame = 2
Query:   47 STKMVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLG--KIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATR 322
            + +MVK++A +L  K K +L KQL  LK EL++L VAKVTG+  +KL   K  +L   + +  +   T+ + +       R+L+P   R+  TR
Sbjct: 1137 NAEMVKIKARDLHDKKKEELLKQLDDLKVELSQLPVAKVTGSAASKLSNPKSSLLLTRLKKKTSGNSTRARSTSPWACDPRRLEPCVTRSPNTR 1230          
BLAST of 60S ribosomal protein L35 vs. UniProt/SwissProt
Match: sp|Q98TF7|RL35_CHICK (60S ribosomal protein L35 OS=Gallus gallus OX=9031 GN=RPL35 PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 9.270e-31
Identity = 65/122 (53.28%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRAMRR+L  +++N KT +Q R +R +P   YAIK
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRKYAIK 122          
BLAST of 60S ribosomal protein L35 vs. UniProt/SwissProt
Match: sp|Q3MHM7|RL35_BOVIN (60S ribosomal protein L35 OS=Bos taurus OX=9913 GN=RPL35 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.067e-30
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRAMRR+L  +++N KT +Q R +R +P   YA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
BLAST of 60S ribosomal protein L35 vs. UniProt/SwissProt
Match: sp|P42766|RL35_HUMAN (60S ribosomal protein L35 OS=Homo sapiens OX=9606 GN=RPL35 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.663e-30
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRAMRR+L  +++N KT +Q R +R +P   YA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
BLAST of 60S ribosomal protein L35 vs. UniProt/SwissProt
Match: sp|Q29361|RL35_PIG (60S ribosomal protein L35 OS=Sus scrofa OX=9823 GN=RPL35 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 3.103e-30
Identity = 63/122 (51.64%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRAMRR+L  +++N KT +Q R +R +P   +A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKFAVK 122          
BLAST of 60S ribosomal protein L35 vs. UniProt/SwissProt
Match: sp|P17078|RL35_RAT (60S ribosomal protein L35 OS=Rattus norvegicus OX=10116 GN=Rpl35 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 5.131e-30
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRAMRR+LT +++  KT +Q R +R +P   YA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of 60S ribosomal protein L35 vs. TrEMBL
Match: A0A194ANB1 (Putative ribosomal protein L35 OS=Pinctada fucata OX=50426 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 6.706e-33
Identity = 69/123 (56.10%), Postives = 91/123 (73.98%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIKQ 424
            M K++A EL  K K +L KQL +LK EL  LRVAKVTG   +KL KIRV+RKSIARV+TV+H  QKD+LR+YY+ +K KP+ IR K TRAMRR LT  +K+ KT +Q+R +R +P   +A+K+
Sbjct:    1 MAKVKAKELRGKKKEELVKQLDELKNELGTLRVAKVTGGAASKLSKIRVVRKSIARVLTVIHQTQKDNLRKYYKSKKFKPKDIRAKKTRAMRRALTPYEKSLKTKKQLRKERLYPMRKFAVKE 123          
BLAST of 60S ribosomal protein L35 vs. TrEMBL
Match: A2I3Z9 (Ribosomal protein L35e-like protein OS=Maconellicoccus hirsutus OX=177089 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.260e-32
Identity = 66/121 (54.55%), Postives = 92/121 (76.03%), Query Frame = 2
Query:   59 VKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            +++R SEL  K+K +L KQL +LKTELA LRVAKVTG   +KL KIRV+RK+IARV  VMH KQK++LR++ ++RK KP  +R K TRA+RR LT  ++N KT +QIR ++ +P  ++A+K
Sbjct:    1 MRVRCSELRTKDKKELTKQLDELKTELANLRVAKVTGGAASKLSKIRVVRKAIARVYIVMHQKQKENLRKFLKNRKYKPLDLRPKKTRALRRALTKKERNIKTSKQIRKNQVFPPRLFAVK 121          
BLAST of 60S ribosomal protein L35 vs. TrEMBL
Match: D3PIC3 (60S ribosomal protein L35 OS=Lepeophtheirus salmonis OX=72036 GN=RL35 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.119e-32
Identity = 68/122 (55.74%), Postives = 92/122 (75.41%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            MVK++ SEL  K K +L KQLH LKTEL  LRV+KVTG   +KL KIRV+RKSIARV  VMH KQK++LR++Y+ +K KP  +R K TRA+RR+LT ++ + KT R++R  +A+P+  +AIK
Sbjct:    1 MVKIKCSELRLKKKEELTKQLHALKTELGALRVSKVTGGAASKLSKIRVVRKSIARVYIVMHQKQKENLRKFYRDKKYKPLDLRPKKTRAIRRRLTPHEASLKTSREMRQMKAFPKRKFAIK 122          
BLAST of 60S ribosomal protein L35 vs. TrEMBL
Match: E2A6K4 (60S ribosomal protein L35 OS=Camponotus floridanus OX=104421 GN=EAG_16317 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.302e-32
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            MVK++ SEL  K+K +L KQL QLKTEL  LRVAKVTG   +KL KIRV+RK+IARV  +MH KQK +LR +Y+++K KP  +R K TRA+RR LT  Q ++KT+++IR   A+P+  YA+K
Sbjct:    1 MVKVKCSELRTKDKKELLKQLEQLKTELTTLRVAKVTGGAASKLSKIRVVRKAIARVYIIMHQKQKGNLRLFYKNKKYKPLDLRPKKTRALRRVLTPYQASRKTLKEIRKRSAFPQRKYALK 122          
BLAST of 60S ribosomal protein L35 vs. TrEMBL
Match: A0A1B6G8E4 (Uncharacterized protein (Fragment) OS=Cuerna arida OX=1464854 GN=g.2536 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.991e-31
Identity = 67/122 (54.92%), Postives = 92/122 (75.41%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M K++ SEL  K+K +L KQL +LKTEL  LRVAKVTG   +KL KIRV+RK+IARV  VMH KQK++LR+ ++++K KP  +R K TRAMRR LT ++KN KT+++IR  +A+P   +A+K
Sbjct:    6 MGKVKCSELRTKDKKELLKQLEELKTELTNLRVAKVTGGAASKLSKIRVVRKAIARVYIVMHQKQKENLRKLFKNKKYKPLDLRPKKTRAMRRALTSHEKNLKTMKEIRKRQAFPPRKFAVK 127          
BLAST of 60S ribosomal protein L35 vs. Ensembl Cavefish
Match: rpl35 (ribosomal protein L35 [Source:NCBI gene;Acc:103045677])

HSP 1 Score: 108.227 bits (269), Expect = 1.064e-27
Identity = 60/122 (49.18%), Postives = 87/122 (71.31%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M K++A +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRA+RRQLT ++++  T +  R  R +    +A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAIRRQLTKHEQSLMTKKMQRKSRLYSVRKFAVK 122          
BLAST of 60S ribosomal protein L35 vs. Ensembl Cavefish
Match: rpl35 (ribosomal protein L35 [Source:NCBI gene;Acc:103045677])

HSP 1 Score: 80.1073 bits (196), Expect = 8.844e-18
Identity = 52/115 (45.22%), Postives = 76/115 (66.09%), Query Frame = 2
Query:   77 ELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            +L  K K +L KQL  LK EL++LRVAKVT          RV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R K TRA+RRQLT ++++  T +  R  R +    +A+K
Sbjct:    8 DLRGKKKEELLKQLDDLKVELSQLRVAKVTVQEHLYH---RVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAIRRQLTKHEQSLMTKKMQRKSRLYSVRKFAVK 119          
BLAST of 60S ribosomal protein L35 vs. Ensembl Yeast
Match: RPL35A (Ribosomal 60S subunit protein L35A; homologous to mammalian ribosomal protein L35 and bacterial L29; RPL35A has a paralog, RPL35B, that arose from the whole genome duplication [Source:SGD;Acc:S000002350])

HSP 1 Score: 84.7297 bits (208), Expect = 2.498e-20
Identity = 52/122 (42.62%), Postives = 81/122 (66.39%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M  ++A EL  K+K  L  QL  LK ELAEL+V K++      L KI+ +RKSIA V+TV++ +Q++++RQ Y+ +K +P+ +R K TRA+RR LT  + ++ T +Q +   A+P+  YAIK
Sbjct:    1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS---LPKIKTVRKSIACVLTVINEQQREAVRQLYKGKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYAIK 119          
BLAST of 60S ribosomal protein L35 vs. Ensembl Yeast
Match: RPL35B (Ribosomal 60S subunit protein L35B; homologous to mammalian ribosomal protein L35 and bacterial L29; RPL35B has a paralog, RPL35A, that arose from the whole genome duplication [Source:SGD;Acc:S000002295])

HSP 1 Score: 84.7297 bits (208), Expect = 2.498e-20
Identity = 52/122 (42.62%), Postives = 81/122 (66.39%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            M  ++A EL  K+K  L  QL  LK ELAEL+V K++      L KI+ +RKSIA V+TV++ +Q++++RQ Y+ +K +P+ +R K TRA+RR LT  + ++ T +Q +   A+P+  YAIK
Sbjct:    1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS---LPKIKTVRKSIACVLTVINEQQREAVRQLYKGKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYAIK 119          
BLAST of 60S ribosomal protein L35 vs. Ensembl Nematostella
Match: EDO33935 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQT2])

HSP 1 Score: 110.923 bits (276), Expect = 4.045e-29
Identity = 58/107 (54.21%), Postives = 81/107 (75.70%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQ 376
            MVK++A EL  K K +L KQL +LKTEL++LRVAKVTG   +KL KI+V+RKS+ARV+TV+   Q+D+LR++Y+ +K  P  +R K TRAMRR LT  + + KT++Q
Sbjct:    1 MVKVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVSQTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQ 107          
BLAST of 60S ribosomal protein L35 vs. Ensembl Medaka
Match: rpl35 (ribosomal protein L35 [Source:NCBI gene;Acc:192299])

HSP 1 Score: 100.523 bits (249), Expect = 5.130e-25
Identity = 55/115 (47.83%), Postives = 82/115 (71.30%), Query Frame = 2
Query:   77 ELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIK 421
            +L  K K +L KQL  LK EL++LRVAKVTG   +KL KIRV+RKSIARV+TV++  QK++LR++Y+ +K KP  +R + TRA+RR+L  +++  +T +Q R D  +    +A+K
Sbjct:    7 DLRGKKKEELLKQLDDLKNELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPRKTRALRRRLNKHEEGLRTKKQQRKDLLYSMRKFAVK 121          
BLAST of 60S ribosomal protein L35 vs. Planmine SMEST
Match: SMESG000077214.1 (SMESG000077214.1)

HSP 1 Score: 245.358 bits (625), Expect = 1.081e-79
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 2
Query:   56 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIKQ 424
            MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIKQ
Sbjct:    1 MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVLRKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQKNKKTVRQIRLDRAWPEIIYAIKQ 123          
BLAST of 60S ribosomal protein L35 vs. Planmine SMEST
Match: SMESG000042352.1 (SMESG000042352.1)

HSP 1 Score: 58.9214 bits (141), Expect = 5.051e-9
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = -3
Query: 1118 KFKDTIFKYIFHQHAQAFIVRKSENTNLFIKLAQQFHISLGKLVASQHWVDGFLARNELSLRRSTTLFKLHD 1333
            + ++ I++ I  + A A +VR+++     ++ A +F I   +  AS+HW+D F  R+ELS RRSTTLFKL D
Sbjct:   73 ELEECIWECIADRRAMALVVRRADFQKFALETAIEFSIFTEEFKASKHWLDNFFQRHELSPRRSTTLFKLED 144          

HSP 2 Score: 20.7866 bits (42), Expect = 5.051e-9
Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = -1
Query: 1390 CNMIKLALSVVRRWRADY 1443
            C    L L +V +WRADY
Sbjct:   29 CKENMLDLRMVCKWRADY 46          
BLAST of 60S ribosomal protein L35 vs. Planmine SMEST
Match: SMESG000033246.1 (SMESG000033246.1)

HSP 1 Score: 58.5362 bits (140), Expect = 7.047e-9
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 3
Query:  588 DCMYDNVCNCLHEIEFFDNIWYDDVATLDVIDTVDKGMDNKLATLNNSYDIVIKYDKVGGRPSINILINNKKFNCLLDTGAKISVIRKEIIN 863
            D + + V   LHE       W  D +  D +  +   ++      N + D +IKY+K+ GRPS+ ILINN +  CLLDTGAKISVI + ++N
Sbjct:  243 DQLREKVIGALHE-------WSKDESRFDDVGEI---LEYACNINNVNDDNLIKYNKLNGRPSVTILINNSELCCLLDTGAKISVIDESVLN 324          
BLAST of 60S ribosomal protein L35 vs. Planmine SMEST
Match: SMESG000053907.1 (SMESG000053907.1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.502e-6
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  615 CLHEIEFFDNIWYDDVATLDVIDTVDKGMDNKLATLNNSYDIVIKYDKVGGRPSINILINNKKFNCLLDTGAKISVIRKEIIN 863
            CL + EF+   W  D    D +  +   ++      N + D +IKY+K+ GRP++ ILINN +  CLLDTGA I +I + I++
Sbjct:   33 CLPDSEFYSK-WCKDETRFDDVREI---LEYVCNINNVNNDNLIKYNKLNGRPNVTILINNSELCCLLDTGANICMIDESILD 111          
The following BLAST results are available for this feature:
BLAST of 60S ribosomal protein L35 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
RPL353.462e-3152.46ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL356.174e-1956.76ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL356.174e-1956.76ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL356.174e-1956.76ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC... [more]
back to top
BLAST of 60S ribosomal protein L35 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpl-352.068e-2247.6660S ribosomal protein L35 [Source:UniProtKB/Swiss... [more]
rpl-352.068e-2247.6660S ribosomal protein L35 [Source:UniProtKB/Swiss... [more]
rpl-352.068e-2247.6660S ribosomal protein L35 [Source:UniProtKB/Swiss... [more]
back to top
BLAST of 60S ribosomal protein L35 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
RpL355.995e-3250.82gene:FBgn0029785 transcript:FBtr0070801[more]
RpL355.995e-3250.82gene:FBgn0029785 transcript:FBtr0345788[more]
RpL355.995e-3250.82gene:FBgn0029785 transcript:FBtr0070800[more]
back to top
BLAST of 60S ribosomal protein L35 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpl352.654e-2850.00ribosomal protein L35 [Source:NCBI gene;Acc:192299... [more]
rpl351.927e-2750.00ribosomal protein L35 [Source:NCBI gene;Acc:192299... [more]
back to top
BLAST of 60S ribosomal protein L35 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
has38.627e-2848.36hyaluronan synthase 3 [Source:Xenbase;Acc:XB-GENE-... [more]
has33.229e-2748.80hyaluronan synthase 3 [Source:Xenbase;Acc:XB-GENE-... [more]
back to top
BLAST of 60S ribosomal protein L35 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Gm20007.335e-3152.46predicted gene 2000 [Source:MGI Symbol;Acc:MGI:378... [more]
Rpl357.335e-3152.46ribosomal protein L35 [Source:MGI Symbol;Acc:MGI:1... [more]
Gm493682.009e-635.87predicted gene, 49368 [Source:MGI Symbol;Acc:MGI:6... [more]
Gm493683.666e-635.11predicted gene, 49368 [Source:MGI Symbol;Acc:MGI:6... [more]
back to top
BLAST of 60S ribosomal protein L35 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q98TF7|RL35_CHICK9.270e-3153.2860S ribosomal protein L35 OS=Gallus gallus OX=9031... [more]
sp|Q3MHM7|RL35_BOVIN1.067e-3052.4660S ribosomal protein L35 OS=Bos taurus OX=9913 GN... [more]
sp|P42766|RL35_HUMAN1.663e-3052.4660S ribosomal protein L35 OS=Homo sapiens OX=9606 ... [more]
sp|Q29361|RL35_PIG3.103e-3051.6460S ribosomal protein L35 OS=Sus scrofa OX=9823 GN... [more]
sp|P17078|RL35_RAT5.131e-3052.4660S ribosomal protein L35 OS=Rattus norvegicus OX=... [more]
back to top
BLAST of 60S ribosomal protein L35 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A194ANB16.706e-3356.10Putative ribosomal protein L35 OS=Pinctada fucata ... [more]
A2I3Z93.260e-3254.55Ribosomal protein L35e-like protein OS=Maconellico... [more]
D3PIC34.119e-3255.7460S ribosomal protein L35 OS=Lepeophtheirus salmon... [more]
E2A6K49.302e-3255.7460S ribosomal protein L35 OS=Camponotus floridanus... [more]
A0A1B6G8E41.991e-3154.92Uncharacterized protein (Fragment) OS=Cuerna arida... [more]
back to top
BLAST of 60S ribosomal protein L35 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpl351.064e-2749.18ribosomal protein L35 [Source:NCBI gene;Acc:103045... [more]
rpl358.844e-1845.22ribosomal protein L35 [Source:NCBI gene;Acc:103045... [more]
back to top
BLAST of 60S ribosomal protein L35 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of 60S ribosomal protein L35 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
RPL35A2.498e-2042.62Ribosomal 60S subunit protein L35A; homologous to ... [more]
RPL35B2.498e-2042.62Ribosomal 60S subunit protein L35B; homologous to ... [more]
back to top
BLAST of 60S ribosomal protein L35 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO339354.045e-2954.21Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of 60S ribosomal protein L35 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl355.130e-2547.83ribosomal protein L35 [Source:NCBI gene;Acc:192299... [more]
back to top
BLAST of 60S ribosomal protein L35 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000077214.11.081e-79100.00SMESG000077214.1[more]
SMESG000042352.15.051e-940.28SMESG000042352.1[more]
SMESG000033246.17.047e-939.13SMESG000033246.1[more]
SMESG000053907.11.502e-637.35SMESG000053907.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021253 ID=SMED30021253|Name=60S ribosomal protein L35|organism=Schmidtea mediterranea sexual|type=transcript|length=1602bp
ATTTGTTTAAATATATAGAATAGTTTTAGAAGTAAAATTTTAAATATCTA
CAAAAATGGTCAAACTTCGTGCTTCAGAATTGACTAAGAAAAATAAAGCT
GATTTAGAAAAACAATTACATCAGCTTAAAACTGAATTGGCTGAATTACG
AGTTGCCAAAGTTACTGGTGCTGGAGGAACCAAATTGGGAAAAATTCGTG
TCTTGAGAAAATCAATTGCTCGAGTAATGACTGTTATGCATACAAAGCAA
AAGGACAGTTTGAGACAATATTACCAACATAGGAAATTAAAACCACAAGG
TATTAGAACTAAAGCAACAAGAGCTATGCGACGTCAATTGACAGACAATC
AAAAGAACAAAAAAACTGTTCGTCAAATCCGTTTGGACAGAGCATGGCCC
GAAATTATTTATGCTATTAAGCAATAAATTTTAAAATATAGTTTGGAAAT
TTAAAAAAAAAAAAAAAAAACAGATAAAGGAGATGATGAGAACATATGTC
CGACAGCGAATACCCAAATGGCAACGCTCCAACACAAGAGGAAGTGATTG
GAGCGATAAACTAAATGTAAGTAATATCTTGAGCAATGATTGTATGTATG
ATAATGTTTGTAATTGTTTGCATGAAATTGAATTTTTTGATAATATTTGG
TATGATGATGTTGCCACGCTTGATGTTATAGATACTGTAGATAAAGGGAT
GGACAATAAATTAGCTACTTTAAATAATAGTTATGATATTGTAATAAAAT
ATGATAAAGTGGGGGGTAGGCCCAGTATTAATATCTTGATCAATAATAAG
AAATTTAATTGCCTTTTGGATACGGGAGCTAAAATAAGTGTCATCAGAAA
AGAAATAATTAATTGCAAATGAAGATACTCTACTTTTTCTTTTTGTAATT
AGCATTGGCGGCAGTTTTCTGACACTACAATTTATTGCAAGAATACAGAT
GACTATGGTACTCCCTTATCCTCTACAATCAATAGTTTTTTGTGTAGCTT
GTCCGAAAAATATGGATGTTTCATCCATAGGAATTATATTTTATAATTGA
TATTGGGTAAAGTTTAAATGATCTATAAATGATTTGAATGATAATGTCCT
CTTTATAATCTCTATATATCATGTAACTTAAATAATGTCGTTGACCTTCT
TAAAGACAATTCATTCCTTGCTAGAAACCCATCAACCCAGTGTTGTGAAG
CTACAAGTTTTCCCAAAGAGATATGAAACTGTTGAGCCAATTTAATAAAA
AGATTTGTATTTTCTGATTTTCGAACGATAAAAGCTTGAGCATGTTGGTG
AAAAATATATTTAAAAATTGTGTCTTTAAACTTCCATGCACCAACTGTGT
ACTTTTAAATTTCCAACATTTTTTGTCGAAAAGATTATAATAATCTGCGC
GCCATCGTCGGACCACACTCAAAGCAAGTTTTATCATGTTGCAAATTCCG
TTAAACACTTATCATTCGATTCGTTCACAATGCTTATTTTATATTGAGTA
ACTTATATATTAAAATATTTCGTCTAATATTGATCAAATATATTCATAAT
ATATATCATAAAATTTTTTATATCTTAAATATTGGAAAGCACTAAGGCTG
AA
back to top

protein sequence of SMED30021253-orf-1

>SMED30021253-orf-1 ID=SMED30021253-orf-1|Name=SMED30021253-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=124bp
MVKLRASELTKKNKADLEKQLHQLKTELAELRVAKVTGAGGTKLGKIRVL
RKSIARVMTVMHTKQKDSLRQYYQHRKLKPQGIRTKATRAMRRQLTDNQK
NKKTVRQIRLDRAWPEIIYAIKQ*
back to top

protein sequence of SMED30021253-orf-2

>SMED30021253-orf-2 ID=SMED30021253-orf-2|Name=SMED30021253-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=130bp
MMRTYVRQRIPKWQRSNTRGSDWSDKLNVSNILSNDCMYDNVCNCLHEIE
FFDNIWYDDVATLDVIDTVDKGMDNKLATLNNSYDIVIKYDKVGGRPSIN
ILINNKKFNCLLDTGAKISVIRKEIINCK*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000103central nervous system
PLANA:0000418head
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR018061Retropepsins
IPR021109Peptidase_aspartic_dom_sf
IPR001854Ribosomal_L29
IPR018254Ribosomal_L29_CS
Vocabulary: cellular component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: biological process
TermDefinition
GO:0006412translation