SMED30021189
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30021189 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Alignments
SMED30021189 aligns in the following genomic locations:
Homology
BLAST of SMED30021189 vs. Ensembl Human
Match: GNAO1 (G protein subunit alpha o1 [Source:HGNC Symbol;Acc:HGNC:4389]) HSP 1 Score: 51.6026 bits (122), Expect = 3.095e-8 Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = -1 Query: 593 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKFRKNPPGYPLS 796 MGC +S E++ A+ERSK I+K+LKEDGI K + + ++G +SGKSTI KQ+K YPLS Sbjct: 1 MGCTLSAEERAALERSKAIEKNLKEDGIS---AAKDVKLLLLGAGESGKSTIVKQMK-------YPLS 58
BLAST of SMED30021189 vs. Ensembl Human
Match: GNAO1 (G protein subunit alpha o1 [Source:HGNC Symbol;Acc:HGNC:4389]) HSP 1 Score: 49.2914 bits (116), Expect = 9.080e-8 Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = -1 Query: 626 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIK 796 MGC +S E++ A+ERSK I+K+LKEDGI K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEERAALERSKAIEKNLKEDGIS---AAKDVKLLLLGAGESGKSTIVKQMK 54
BLAST of SMED30021189 vs. Ensembl Human
Match: GNAO1 (G protein subunit alpha o1 [Source:HGNC Symbol;Acc:HGNC:4389]) HSP 1 Score: 50.0618 bits (118), Expect = 1.868e-7 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S E++ A+ERSK I+K+LKEDGI K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEERAALERSKAIEKNLKEDGIS---AAKDVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Human
Match: GNAI1 (G protein subunit alpha i1 [Source:HGNC Symbol;Acc:HGNC:4384]) HSP 1 Score: 50.8322 bits (120), Expect = 1.978e-7 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A+ERSK ID++L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEDKAAVERSKMIDRNLREDG---EKAAREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Human
Match: GNAO1 (G protein subunit alpha o1 [Source:HGNC Symbol;Acc:HGNC:4389]) HSP 1 Score: 50.447 bits (119), Expect = 2.903e-7 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S E++ A+ERSK I+K+LKEDGI K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEERAALERSKAIEKNLKEDGI---SAAKDVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Celegans
Match: goa-1 (Guanine nucleotide-binding protein G(o) subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P51875]) HSP 1 Score: 48.521 bits (114), Expect = 2.349e-6 Identity = 28/58 (48.28%), Postives = 42/58 (72.41%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S E++ A+ERS+ I+K+LKEDG+Q K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTMSQEERAALERSRMIEKNLKEDGMQ---AAKDIKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Fly
Match: Galphao (gene:FBgn0001122 transcript:FBtr0088267) HSP 1 Score: 51.2174 bits (121), Expect = 4.039e-7 Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC S E++ AI+RSK I+K+LKEDGIQ K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTTSAEERAAIQRSKQIEKNLKEDGIQ---AAKDIKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Fly
Match: Galphao (gene:FBgn0001122 transcript:FBtr0088269) HSP 1 Score: 51.2174 bits (121), Expect = 4.039e-7 Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC S E++ AI+RSK I+K+LKEDGIQ K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTTSAEERAAIQRSKQIEKNLKEDGIQ---AAKDIKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Fly
Match: Galphao (gene:FBgn0001122 transcript:FBtr0088264) HSP 1 Score: 51.2174 bits (121), Expect = 4.039e-7 Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC S E++ AI+RSK I+K+LKEDGIQ K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTTSAEERAAIQRSKQIEKNLKEDGIQ---AAKDIKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Fly
Match: Galphao (gene:FBgn0001122 transcript:FBtr0088268) HSP 1 Score: 51.2174 bits (121), Expect = 4.039e-7 Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC S E++ AI+RSK I+K+LKEDGIQ K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTTSAEERAAIQRSKQIEKNLKEDGIQ---AAKDIKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Fly
Match: Galphao (gene:FBgn0001122 transcript:FBtr0088270) HSP 1 Score: 51.2174 bits (121), Expect = 4.039e-7 Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC S E++ AI+RSK I+K+LKEDGIQ K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTTSAEERAAIQRSKQIEKNLKEDGIQ---AAKDIKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Zebrafish
Match: gnai2b (guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5861]) HSP 1 Score: 50.0618 bits (118), Expect = 1.397e-6 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A ERSK IDK+L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTVSAEDKAAAERSKMIDKNLREDG---EKAAREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Zebrafish
Match: gnai2a (guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2a [Source:ZFIN;Acc:ZDB-GENE-030131-8365]) HSP 1 Score: 49.2914 bits (116), Expect = 2.520e-6 Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A+ERSK ID++L+EDG K K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTVSQEDKAALERSKMIDRNLREDG---EKAAKEVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Zebrafish
Match: gnai1 (guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1310]) HSP 1 Score: 48.521 bits (114), Expect = 3.615e-6 Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = -1 Query: 599 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKFRKNPPGYP 796 MGC +S EDK A+ERSK ID++L++DG K + + + ++G +SGKSTI KQ+K + GY Sbjct: 1 MGCTLSTEDKAAVERSKMIDRNLRDDG---EKAAREVKLLLLGAGESGKSTIVKQMKI-IHEAGYS 62
BLAST of SMED30021189 vs. Ensembl Zebrafish
Match: gnai3 (guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-070713-6]) HSP 1 Score: 48.1358 bits (113), Expect = 5.243e-6 Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A+E+SK ID++L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSTEDKAAMEKSKMIDRTLREDG---EKASREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Zebrafish
Match: gnao1a (guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]) HSP 1 Score: 48.1358 bits (113), Expect = 5.387e-6 Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S E++ A++RSK I+K+LKEDGI K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEERAALDRSKAIEKNLKEDGI---TAAKDVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Xenopus
Match: gnai2 (guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 [Source:NCBI gene;Acc:394861]) HSP 1 Score: 53.1434 bits (126), Expect = 1.626e-7 Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A ERSKNIDK+L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTVSAEDKAAAERSKNIDKNLREDG---EKAAREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Xenopus
Match: gnai2 (guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 [Source:NCBI gene;Acc:394861]) HSP 1 Score: 53.1434 bits (126), Expect = 1.895e-7 Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = -1 Query: 626 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIK 796 MGC +S EDK A ERSKNIDK+L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTVSAEDKAAAERSKNIDKNLREDG---EKAAREVKLLLLGAGESGKSTIVKQMK 54
BLAST of SMED30021189 vs. Ensembl Xenopus
Match: gnao1 (G protein subunit alpha o1 [Source:NCBI gene;Acc:549749]) HSP 1 Score: 50.447 bits (119), Expect = 1.526e-6 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S E++ A+ERSK I+K+LKEDGI K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEERAALERSKQIEKNLKEDGIS---AAKDVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Xenopus
Match: gnao1 (G protein subunit alpha o1 [Source:NCBI gene;Acc:549749]) HSP 1 Score: 50.0618 bits (118), Expect = 1.597e-6 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S E++ A+ERSK I+K+LKEDGI K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEERAALERSKQIEKNLKEDGIS---AAKDVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Xenopus
Match: gnai1 (guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 [Source:NCBI gene;Acc:100038283]) HSP 1 Score: 50.447 bits (119), Expect = 1.639e-6 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A+ERSK ID++L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 44 MGCTLSAEDKAAVERSKMIDRNLREDG---EKAAREVKLLLLGAGESGKSTIVKQMKI 98
BLAST of SMED30021189 vs. Ensembl Mouse
Match: Gnai3 (guanine nucleotide binding protein (G protein), alpha inhibiting 3 [Source:MGI Symbol;Acc:MGI:95773]) HSP 1 Score: 50.0618 bits (118), Expect = 1.254e-6 Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A+ERSK ID++L+EDG K K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEDKAAVERSKMIDRNLREDG---EKAAKEVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Mouse
Match: Gnai1 (guanine nucleotide binding protein (G protein), alpha inhibiting 1 [Source:MGI Symbol;Acc:MGI:95771]) HSP 1 Score: 50.0618 bits (118), Expect = 1.313e-6 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A+ERSK ID++L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEDKAAVERSKMIDRNLREDG---EKAAREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Mouse
Match: Gnai2 (guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]) HSP 1 Score: 50.0618 bits (118), Expect = 1.454e-6 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A ERSK IDK+L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTVSAEDKAAAERSKMIDKNLREDG---EKAAREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Mouse
Match: Gnai2 (guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]) HSP 1 Score: 50.0618 bits (118), Expect = 1.454e-6 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A ERSK IDK+L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTVSAEDKAAAERSKMIDKNLREDG---EKAAREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Mouse
Match: Gnao1 (guanine nucleotide binding protein, alpha O [Source:MGI Symbol;Acc:MGI:95775]) HSP 1 Score: 49.6766 bits (117), Expect = 1.820e-6 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S E++ A+ERSK I+K+LKEDGI K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEERAALERSKAIEKNLKEDGIS---AAKDVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. UniProt/SwissProt
Match: sp|O15976|GNAO_MIZYE (Guanine nucleotide-binding protein G(o) subunit alpha OS=Mizuhopecten yessoensis OX=6573 GN=SCGOA PE=2 SV=3) HSP 1 Score: 51.9878 bits (123), Expect = 2.470e-6 Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S ED+ A ERS++I+K LKEDGIQ K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTMSAEDRAAAERSRDIEKKLKEDGIQ---AAKDIKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. UniProt/SwissProt
Match: sp|P38404|GNAO_LOCMI (Guanine nucleotide-binding protein G(o) subunit alpha OS=Locusta migratoria OX=7004 PE=3 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 5.467e-6 Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = -1 Query: 626 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIK 796 MGCA+S E++ A+ RSK I+K+LKEDG+Q K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCAMSAEERAALARSKQIEKNLKEDGLQ---AAKDIKLLLLGAGESGKSTIVKQMK 54
BLAST of SMED30021189 vs. UniProt/SwissProt
Match: sp|P30683|GNAO_LYMST (Guanine nucleotide-binding protein G(o) subunit alpha OS=Lymnaea stagnalis OX=6523 PE=2 SV=3) HSP 1 Score: 50.447 bits (119), Expect = 6.324e-6 Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S E++ A+ERSK I+K+LKEDG+Q K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEERAAMERSKAIEKNLKEDGMQ---AAKDIKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. UniProt/SwissProt
Match: sp|P51877|GNAO_PLATR (Guanine nucleotide-binding protein G(o) subunit alpha OS=Planorbella trivolvis OX=283763 PE=2 SV=2) HSP 1 Score: 50.447 bits (119), Expect = 6.440e-6 Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S E++ A+ERSK I+K+LKEDG+Q K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEERAAMERSKAIEKNLKEDGMQ---AAKDIKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. UniProt/SwissProt
Match: sp|Q5RAD4|GNAI1_PONAB (Guanine nucleotide-binding protein G(i) subunit alpha-1 OS=Pongo abelii OX=9601 GN=GNAI1 PE=2 SV=3) HSP 1 Score: 50.0618 bits (118), Expect = 8.460e-6 Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A+ERSK ID++L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEDKAAVERSKMIDRNLREDG---EKAAREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. TrEMBL
Match: A0A2J8VYP2 (GNAO1 isoform 5 OS=Pongo abelii OX=9601 GN=CR201_G0014568 PE=4 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 4.003e-6 Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = -1 Query: 590 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKFR---KNPPGYPLSV 796 MGC +S E++ A+ERSK I+K+LKEDGI K + + ++G +SGKSTI KQ+K+R + PG LSV Sbjct: 1 MGCTLSAEERAALERSKAIEKNLKEDGIS---AAKDVKLLLLGAGESGKSTIVKQMKYRLSFYSVPGTILSV 69
BLAST of SMED30021189 vs. Ensembl Cavefish
Match: ENSAMXT00000044204.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000133.1:1325820:1326334:-1 gene:ENSAMXG00000043193.1 transcript:ENSAMXT00000044204.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 48.1358 bits (113), Expect = 1.641e-7 Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = -1 Query: 626 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIK 796 MGC +S E++ A++RSK I+K+LKEDG+ K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEERAALDRSKAIEKNLKEDGL---TAAKEVKLLLLGGGESGKSTIVKQMK 54
BLAST of SMED30021189 vs. Ensembl Cavefish
Match: gnai2a (guanine nucleotide-binding protein G(i) subunit alpha-2 [Source:NCBI gene;Acc:103033963]) HSP 1 Score: 50.447 bits (119), Expect = 7.793e-7 Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A ERS++IDKSL+EDG K K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTVSQEDKAAAERSRHIDKSLREDG---EKAAKEVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Cavefish
Match: gnai2b (guanine nucleotide-binding protein G(i) subunit alpha-2 [Source:NCBI gene;Acc:111193748]) HSP 1 Score: 50.0618 bits (118), Expect = 1.121e-6 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A ERSK IDK+L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTVSAEDKAAAERSKMIDKNLREDG---EKAAREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Cavefish
Match: gnao1a (G protein subunit alpha o1 [Source:NCBI gene;Acc:103039135]) HSP 1 Score: 48.1358 bits (113), Expect = 4.170e-6 Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S E++ A++RSK I+K+LKEDGI K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEERAALDRSKAIEKNLKEDGI---TAAKDVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Cavefish
Match: gnao1a (G protein subunit alpha o1 [Source:NCBI gene;Acc:103039135]) HSP 1 Score: 48.1358 bits (113), Expect = 4.607e-6 Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S E++ A++RSK I+K+LKEDGI K + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEERAALDRSKAIEKNLKEDGI---TAAKDVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Sea Lamprey
Match: gnai3 (guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-070713-6]) HSP 1 Score: 49.2914 bits (116), Expect = 3.705e-7 Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A+ERS+ ID++L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSTEDKAAVERSRMIDRNLREDG---EKASREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Nematostella
Match: EDO49692 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG04]) HSP 1 Score: 47.3654 bits (111), Expect = 2.949e-6 Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A ERSK IDK+L+ DG + + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTLSAEDKAAAERSKMIDKNLRADG---ERAAREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Medaka
Match: gnai2b (guanine nucleotide-binding protein G(i) subunit alpha-2 [Source:NCBI gene;Acc:105358374]) HSP 1 Score: 50.0618 bits (118), Expect = 1.065e-6 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A ERSK IDK+L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTVSAEDKAAAERSKMIDKNLREDG---EKAAREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Medaka
Match: ENSORLT00000020087.2 (guanine nucleotide-binding protein G(i) subunit alpha-1 [Source:NCBI gene;Acc:101157265]) HSP 1 Score: 48.521 bits (114), Expect = 3.274e-6 Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = -1 Query: 599 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKFRKNPPGYP 796 MGC +S EDK A+ERSK ID++L++DG K + + + ++G +SGKSTI KQ+K + GY Sbjct: 1 MGCTLSTEDKAAVERSKMIDRNLRDDG---EKAAREVKLLLLGAGESGKSTIVKQMKI-IHEAGYS 62
BLAST of SMED30021189 vs. Ensembl Medaka
Match: gnai3 (guanine nucleotide-binding protein G(k) subunit alpha [Source:NCBI gene;Acc:101158355]) HSP 1 Score: 48.521 bits (114), Expect = 3.617e-6 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC IS EDK A+ERSK IDK+L+ED K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTISAEDKAAVERSKMIDKNLREDR---EKSSREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Medaka
Match: gnai3 (guanine nucleotide-binding protein G(k) subunit alpha [Source:NCBI gene;Acc:101158355]) HSP 1 Score: 48.521 bits (114), Expect = 3.780e-6 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC IS EDK A+ERSK IDK+L+ED K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTISAEDKAAVERSKMIDKNLREDR---EKSSREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Ensembl Medaka
Match: gnai2 (guanine nucleotide-binding protein G(i) subunit alpha 2 [Source:NCBI gene;Acc:100125814]) HSP 1 Score: 47.7506 bits (112), Expect = 6.651e-6 Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGC +S EDK A +RSK IDK+L+EDG K + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCTVSQEDKAAADRSKMIDKNLREDG---EKAAREVKLLLLGAGESGKSTIVKQMKI 55
BLAST of SMED30021189 vs. Planmine SMEST
Match: SMESG000081490.1 (SMESG000081490.1) HSP 1 Score: 72.7886 bits (177), Expect = 9.003e-16 Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGCAISVEDKIAIERSKNIDKSLKEDGIQF +K + + IIGTEKSGKSTIFKQI F Sbjct: 1 MGCAISVEDKIAIERSKNIDKSLKEDGIQF---LKGIKLLIIGTEKSGKSTIFKQINF 55
BLAST of SMED30021189 vs. Planmine SMEST
Match: SMESG000081490.1 (SMESG000081490.1) HSP 1 Score: 72.7886 bits (177), Expect = 7.136e-15 Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = -1 Query: 623 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIKF 796 MGCAISVEDKIAIERSKNIDKSLKEDGIQF +K + + IIGTEKSGKSTIFKQI F Sbjct: 1 MGCAISVEDKIAIERSKNIDKSLKEDGIQF---LKGIKLLIIGTEKSGKSTIFKQINF 55
BLAST of SMED30021189 vs. Planmine SMEST
Match: SMESG000035762.1 (SMESG000035762.1) HSP 1 Score: 61.6178 bits (148), Expect = 1.018e-10 Identity = 31/48 (64.58%), Postives = 33/48 (68.75%), Query Frame = -1 Query: 14 IQSSTARNGYPLLGDVGNVTTGYEIAKGERYERTAKVRSHSGFNALPL 157 IQ A +GYP LG V NVT G EIAKGER ERT RS GFNALP+ Sbjct: 224 IQLFFASSGYPSLGKVSNVTIGSEIAKGERCERTTLARSQDGFNALPI 271
BLAST of SMED30021189 vs. Planmine SMEST
Match: SMESG000056187.1 (SMESG000056187.1) HSP 1 Score: 56.6102 bits (135), Expect = 2.087e-9 Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = -1 Query: 8 STARNGYPLLGDVGNVTTGYEIAKGERYERTAKVRSHSGFNALPLEG 148 S + NGYPL +VG TTGY IAKGER+ TAK RSHS FNA P++ Sbjct: 13 SLSPNGYPLPSNVGIATTGYGIAKGERHIGTAKARSHSCFNAPPIKA 59
BLAST of SMED30021189 vs. Planmine SMEST
Match: SMESG000081487.1 (SMESG000081487.1) HSP 1 Score: 51.6026 bits (122), Expect = 2.235e-7 Identity = 28/57 (49.12%), Postives = 44/57 (77.19%), Query Frame = -1 Query: 626 MGCAISVEDKIAIERSKNIDKSLKEDGIQFXXXXXXXXXXXXXXXKSGKSTIFKQIK 796 MGCA+S++++IA+ +SK+IDK LKEDG+Q + + + ++G +SGKSTI KQ+K Sbjct: 1 MGCAMSLDERIALNKSKDIDKKLKEDGLQL---QRDIKLLLLGAGESGKSTIMKQMK 54 The following BLAST results are available for this feature:
BLAST of SMED30021189 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30021189 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of SMED30021189 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of SMED30021189 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of SMED30021189 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of SMED30021189 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30021189 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30021189 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 1
BLAST of SMED30021189 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30021189 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of SMED30021189 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30021189 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30021189 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30021189 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30021189 ID=SMED30021189|Name=SMED30021189|organism=Schmidtea mediterranea sexual|type=transcript|length=844bpback to top protein sequence of SMED30021189-orf-1 >SMED30021189-orf-1 ID=SMED30021189-orf-1|Name=SMED30021189-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=137bp DFLNHIYKTTFYFYFKMGCAISVEDKIAIERSKNIDKSLKEDGIQFLKGIback to top Annotated Terms
The following terms have been associated with this transcript:
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