THO complex subunit 4
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30021142 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13
Homology
BLAST of THO complex subunit 4 vs. Ensembl Human
Match: ALYREF (Aly/REF export factor [Source:HGNC Symbol;Acc:HGNC:19071]) HSP 1 Score: 108.227 bits (269), Expect = 6.195e-27 Identity = 49/99 (49.49%), Postives = 73/99 (73.74%), Query Frame = 3 Query: 207 EQWKHDMFKGN--RSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 ++W+HD+F + +++G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + K+ A++A +YNG+PLD +PM I +V + Sbjct: 92 DKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 190
BLAST of THO complex subunit 4 vs. Ensembl Human
Match: POLDIP3 (DNA polymerase delta interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:23782]) HSP 1 Score: 53.9138 bits (128), Expect = 1.601e-7 Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 G K+ ++NL V +EDI ELF G + RA + + G AEV+++ K AI A KYN LD +PMK Sbjct: 296 GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKC 363
BLAST of THO complex subunit 4 vs. Ensembl Human
Match: POLDIP3 (DNA polymerase delta interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:23782]) HSP 1 Score: 53.9138 bits (128), Expect = 1.615e-7 Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 G K+ ++NL V +EDI ELF G + RA + + G AEV+++ K AI A KYN LD +PMK Sbjct: 279 GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKC 346
BLAST of THO complex subunit 4 vs. Ensembl Human
Match: POLDIP3 (DNA polymerase delta interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:23782]) HSP 1 Score: 53.9138 bits (128), Expect = 1.733e-7 Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 G K+ ++NL V +EDI ELF G + RA + + G AEV+++ K AI A KYN LD +PMK Sbjct: 250 GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKC 317
BLAST of THO complex subunit 4 vs. Ensembl Human
Match: SART3 (spliceosome associated factor 3, U4/U6 recycling protein [Source:HGNC Symbol;Acc:HGNC:16860]) HSP 1 Score: 48.1358 bits (113), Expect = 2.299e-6 Identity = 28/87 (32.18%), Postives = 44/87 (50.57%), Query Frame = 3 Query: 228 FKGNRSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMV 488 FK R S HK+ IS L F E++ E+ K G + + +R+G+ G A V Y N+S A QA K +G+ + +K+ + Sbjct: 28 FKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 114
BLAST of THO complex subunit 4 vs. Ensembl Celegans
Match: aly-2 (Ref/ALY RNA export adaptor family [Source:UniProtKB/TrEMBL;Acc:O62183]) HSP 1 Score: 58.5362 bits (140), Expect = 6.444e-10 Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 3 Query: 243 SSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETSAFNRVGXXXXXXXXXXXXXXXXXXXXXXTRSNPPQLXXXX------XXXXXXXQKVAKTKEQLDAEMDEYLSKTG 707 SSN +I ISNL V D+ ELF F + + VN++ +G + GT + I L K A + K+ G+ LD K M V+E+S F R + N+RQ + R +NPP+ + R QK KT EQLDAE+D Y+S++ Sbjct: 73 SSNDNKQVRINISNLAETVISSDLQELFGAF-NLHKVSVNFNENGGAAGTGD-ITLKKYDADRLIQKFAGVALDGKVMHFAVIESSNFAR----KPEIRGTPNRRQSSGKPINRKVANPPRRQNAAKPPVKKGKKPAREQKPPKTAEQLDAELDAYMSRSA 227
BLAST of THO complex subunit 4 vs. Ensembl Celegans
Match: aly-3 (Ref/ALY RNA export adaptor family [Source:UniProtKB/TrEMBL;Acc:Q21559]) HSP 1 Score: 53.1434 bits (126), Expect = 4.889e-8 Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = 3 Query: 60 MDQSLDEIIQSKRKNNFNRQQRPKNNSPIKRGRI----FKRNSGPIVSFGKANEQWKHDMF-KGNRSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETS 500 +D SL++II RK + Q+ K+ +RG R SG + + H + +GN S ++ + ISNL V D+ ELF ++ ++S VN++ G SLGT + I L K A + K++G+ LD K MK V+++S Sbjct: 7 VDLSLEDIISKTRKTTGSIQK--KSFGGARRGNTRPTGLPRRSGGSGGWKDLDAVQNHGISSRGNDSKVIR----VNISNLAPTVISSDLEELFGDY-RLSSVSVNFNEHGDSLGTGD-ISLTKRDAERLVQKFSGVALDGKIMKFAVIDSS 150
BLAST of THO complex subunit 4 vs. Ensembl Celegans
Match: aly-3 (Ref/ALY RNA export adaptor family [Source:UniProtKB/TrEMBL;Acc:Q21559]) HSP 1 Score: 53.1434 bits (126), Expect = 4.889e-8 Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = 3 Query: 60 MDQSLDEIIQSKRKNNFNRQQRPKNNSPIKRGRI----FKRNSGPIVSFGKANEQWKHDMF-KGNRSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETS 500 +D SL++II RK + Q+ K+ +RG R SG + + H + +GN S ++ + ISNL V D+ ELF ++ ++S VN++ G SLGT + I L K A + K++G+ LD K MK V+++S Sbjct: 7 VDLSLEDIISKTRKTTGSIQK--KSFGGARRGNTRPTGLPRRSGGSGGWKDLDAVQNHGISSRGNDSKVIR----VNISNLAPTVISSDLEELFGDY-RLSSVSVNFNEHGDSLGTGD-ISLTKRDAERLVQKFSGVALDGKIMKFAVIDSS 150
BLAST of THO complex subunit 4 vs. Ensembl Celegans
Match: aly-1 (Ref/ALY RNA export adaptor family [Source:UniProtKB/TrEMBL;Acc:Q17561]) HSP 1 Score: 47.7506 bits (112), Expect = 3.240e-6 Identity = 45/154 (29.22%), Postives = 71/154 (46.10%), Query Frame = 3 Query: 267 KIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETSAF-NRVG-XXXXXXXXXXXXXXXXXXXXXXTRSNPP------QLXXXXXXXXXXXQKVAKTKEQLDAEMDEYLSKT 704 +I +SNL V+ D+ +LF EF +I VN++ G+ +GT +V L K A + K+ G+ LD K +K +++++ NRV +N + +S P Q Q KT E+LDAE+D Y+SK Sbjct: 73 RINLSNLAHTVHSGDLRQLFAEF-KIRNVSVNFNEHGKPVGTGDVT-LPKRHADRLIQKFAGVSLDGKEIKFAIIDSANIANRVKFPEAPRRAPSNGRPAQRAPKRQNVKSGKPTGGAGAQKKLKAKKPKREAQP-KKTLEELDAELDVYMSKA 223
BLAST of THO complex subunit 4 vs. Ensembl Fly
Match: Ref1 (gene:FBgn0010774 transcript:FBtr0081642) HSP 1 Score: 113.235 bits (282), Expect = 3.332e-29 Identity = 72/212 (33.96%), Postives = 105/212 (49.53%), Query Frame = 3 Query: 132 NNSPIKRGRIFKRNSGPIVSF---------GKANEQWKHDMFKGNRSSNMKSGH---KIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIM------------VVETSAFNRVGXXXXXXXXXXXXXXXXXXXXXXTRSNPPQLXXXXXXXXXXXQKVAKTKEQLDAEMDEYL 695 SP K G + K G + + G N WKHDM+ G + + G ++ + NLD+GV++ DI ELF +FG I +A V+YDRSGRSLGTA+VI+ ++ A++A +Y+G+PLD +PM I V T RVG + + R P G+ +G R +K T E+LDAE+D Y+ Sbjct: 53 GGSPRKPGSVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRGAVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDVKRRVGGTAPTSFKRGGGQAGGTARRGFKR---PVGGKPAAGGQRRERKAPPTAEELDAELDSYI 261
BLAST of THO complex subunit 4 vs. Ensembl Fly
Match: Ref2 (gene:FBgn0032439 transcript:FBtr0080376) HSP 1 Score: 69.707 bits (169), Expect = 1.030e-13 Identity = 29/77 (37.66%), Postives = 51/77 (66.23%), Query Frame = 3 Query: 270 IQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETS 500 + + NLD+GV+D+DI ELF + G + + V+YDR G SLGTA + + + A Q +++G+ LD + +K+ +V+ + Sbjct: 77 VMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRDGNSLGTAHLSFKYREEAFQIIEQFHGVRLDGRRLKLHLVQNT 153
BLAST of THO complex subunit 4 vs. Ensembl Fly
Match: Ref2 (gene:FBgn0032439 transcript:FBtr0308801) HSP 1 Score: 69.707 bits (169), Expect = 1.030e-13 Identity = 29/77 (37.66%), Postives = 51/77 (66.23%), Query Frame = 3 Query: 270 IQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETS 500 + + NLD+GV+D+DI ELF + G + + V+YDR G SLGTA + + + A Q +++G+ LD + +K+ +V+ + Sbjct: 77 VMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRDGNSLGTAHLSFKYREEAFQIIEQFHGVRLDGRRLKLHLVQNT 153
BLAST of THO complex subunit 4 vs. Ensembl Fly
Match: Ref2 (gene:FBgn0032439 transcript:FBtr0308800) HSP 1 Score: 69.707 bits (169), Expect = 1.030e-13 Identity = 29/77 (37.66%), Postives = 51/77 (66.23%), Query Frame = 3 Query: 270 IQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETS 500 + + NLD+GV+D+DI ELF + G + + V+YDR G SLGTA + + + A Q +++G+ LD + +K+ +V+ + Sbjct: 77 VMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRDGNSLGTAHLSFKYREEAFQIIEQFHGVRLDGRRLKLHLVQNT 153
BLAST of THO complex subunit 4 vs. Ensembl Fly
Match: CG6961 (gene:FBgn0030959 transcript:FBtr0074660) HSP 1 Score: 55.8398 bits (133), Expect = 2.276e-8 Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 3 Query: 240 RSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVV 491 R+SN K G+++ +SNL V DI ELF + G + YD GTAEVIY + A +A + Y+ D++PM ++V Sbjct: 358 RTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPV------YDARVVRPGTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHCVLV 435
BLAST of THO complex subunit 4 vs. Ensembl Zebrafish
Match: alyref (Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]) HSP 1 Score: 108.227 bits (269), Expect = 4.976e-27 Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = 3 Query: 207 EQWKHDMFKGNRSSNMKSGH-------------KIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 ++W+HD+F SSN G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + K+ A++A +YNG+PLD +PM I +V + Sbjct: 93 DKWQHDLFDNGYSSNAGGGGGGGGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 202
BLAST of THO complex subunit 4 vs. Ensembl Zebrafish
Match: alyref (Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]) HSP 1 Score: 108.227 bits (269), Expect = 6.228e-27 Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = 3 Query: 207 EQWKHDMFKGNRSSNMKSGH-------------KIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 ++W+HD+F SSN G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + K+ A++A +YNG+PLD +PM I +V + Sbjct: 93 DKWQHDLFDNGYSSNAGGGGGGGGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 202
BLAST of THO complex subunit 4 vs. Ensembl Zebrafish
Match: poldip3 (polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2]) HSP 1 Score: 56.225 bits (134), Expect = 2.112e-8 Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 G KI ++NL V +EDI ELF G + RA + +G AEV+++ K A+ A KYN LD +PMK Sbjct: 310 GTKITVTNLHPRVTEEDIVELFCVCGALKRARLA------KVGVAEVVFVRKEDAVSAYRKYNNRCLDGQPMKC 377
BLAST of THO complex subunit 4 vs. Ensembl Zebrafish
Match: poldip3 (polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2]) HSP 1 Score: 56.225 bits (134), Expect = 2.361e-8 Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 G KI ++NL V +EDI ELF G + RA + +G AEV+++ K A+ A KYN LD +PMK Sbjct: 322 GTKITVTNLHPRVTEEDIVELFCVCGALKRARLA------KVGVAEVVFVRKEDAVSAYRKYNNRCLDGQPMKC 389
BLAST of THO complex subunit 4 vs. Ensembl Zebrafish
Match: poldip3 (polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2]) HSP 1 Score: 56.225 bits (134), Expect = 2.377e-8 Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 G KI ++NL V +EDI ELF G + RA + +G AEV+++ K A+ A KYN LD +PMK Sbjct: 351 GTKITVTNLHPRVTEEDIVELFCVCGALKRARLA------KVGVAEVVFVRKEDAVSAYRKYNNRCLDGQPMKC 418
BLAST of THO complex subunit 4 vs. Ensembl Xenopus
Match: ralgds (ral guanine nucleotide dissociation stimulator [Source:Xenbase;Acc:XB-GENE-987988]) HSP 1 Score: 127.487 bits (319), Expect = 1.128e-34 Identity = 65/154 (42.21%), Postives = 95/154 (61.69%), Query Frame = 3 Query: 60 MDQSLDEIIQSKRKNNFNRQQRP--KNNSPIKRGRIFKRNS----GPIVSFGKANEQWKHDMFKGN--RSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 MD SLD+II+ NR QRP + P++ + R P + ++W+HD+F + M++G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + K+ A++A +YNG+PLD +PM I +V + Sbjct: 5 MDMSLDDIIK------LNRSQRPAGRGGGPMRSRPVLTRGGRNRPAPYSRPKQLPDKWQHDLFDSGFGTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 152
BLAST of THO complex subunit 4 vs. Ensembl Xenopus
Match: ralgds (ral guanine nucleotide dissociation stimulator [Source:Xenbase;Acc:XB-GENE-987988]) HSP 1 Score: 115.161 bits (287), Expect = 1.092e-29 Identity = 50/99 (50.51%), Postives = 73/99 (73.74%), Query Frame = 3 Query: 207 EQWKHDMFKGN--RSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 ++W+HD+F + M++G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + K+ A++A +YNG+PLD +PM I +V + Sbjct: 88 DKWQHDLFDSGFGTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 186
BLAST of THO complex subunit 4 vs. Ensembl Xenopus
Match: HNRNPM (heterogeneous nuclear ribonucleoprotein M [Source:NCBI gene;Acc:100489127]) HSP 1 Score: 52.7582 bits (125), Expect = 5.507e-7 Identity = 26/74 (35.14%), Postives = 42/74 (56.76%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 G + ++NLD+ V + + E+F G + RA V D+ G+S G V Y A+QA + +NG PL ++PM + Sbjct: 237 GSTVFVANLDYSVGWKKLKEVFGIAGTVVRADVLEDKDGKSRGIGTVTYEQPIEAVQAISMFNGQPLFDRPMMV 310
BLAST of THO complex subunit 4 vs. Ensembl Xenopus
Match: nop2 (NOP2 nucleolar protein [Source:Xenbase;Acc:XB-GENE-962291]) HSP 1 Score: 51.9878 bits (123), Expect = 7.258e-7 Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 G K+ ++NL V +EDI ELF G + RA + S G AEV+++ K A+ A KYN LD +PMK Sbjct: 331 GTKMTVNNLHPRVTEEDIVELFCVCGALKRARL------LSPGAAEVVFVRKDDAVGAYKKYNNRYLDGQPMKC 398
BLAST of THO complex subunit 4 vs. Ensembl Mouse
Match: Alyref2 (Aly/REF export factor 2 [Source:MGI Symbol;Acc:MGI:1913144]) HSP 1 Score: 120.939 bits (302), Expect = 2.195e-32 Identity = 64/150 (42.67%), Postives = 93/150 (62.00%), Query Frame = 3 Query: 60 MDQSLDEIIQSKR-KNNFNRQQRPKNNSP-IKRGRIFKRNSGPIVSFGKANEQWKHDMFKGNRSSN--MKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 MD SLD+II+ R + NR P+ N P I RG + P ++W+HD+F +++G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + ++ A++A +Y G+PLD +PM I +V + Sbjct: 5 MDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG--GRNRPAPYSRPKPLPDKWQHDLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVTS 152
BLAST of THO complex subunit 4 vs. Ensembl Mouse
Match: Gm4302 (predicted gene 4302 [Source:MGI Symbol;Acc:MGI:3782482]) HSP 1 Score: 112.849 bits (281), Expect = 1.201e-28 Identity = 69/167 (41.32%), Postives = 99/167 (59.28%), Query Frame = 3 Query: 60 MDQSLDEIIQSKRKNNFNRQQRPKNNSPIKRGRIFKRNSGPIVSFGKAN------------EQWKHDMFKGN-RSSN-MKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETSAFNRVG 518 MD SL++II + N + +R + +S +KRG KR P + G N ++W+HD+F G R N + +G K+ +SNL FGV+D DI LF EFG + ++ V+YDR GRSLGTA V + K+ A++A +YNG PLD +PM I +V TS +R G Sbjct: 8 MDMSLEDII---KLNKMQQGRRDRPDSRVKRGTGPKRYR-PAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAHVHFERKADALKAMREYNGAPLDGRPMNIHLV-TSQIDRQG 169
BLAST of THO complex subunit 4 vs. Ensembl Mouse
Match: Gm4307 (predicted gene 4307 [Source:MGI Symbol;Acc:MGI:3782487]) HSP 1 Score: 112.849 bits (281), Expect = 1.243e-28 Identity = 69/167 (41.32%), Postives = 99/167 (59.28%), Query Frame = 3 Query: 60 MDQSLDEIIQSKRKNNFNRQQRPKNNSPIKRGRIFKRNSGPIVSFGKAN------------EQWKHDMFKGN-RSSN-MKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETSAFNRVG 518 MD SL++II + N + +R + +S +KRG KR P + G N ++W+HD+F G R N + +G K+ +SNL FGV+D DI LF EFG + ++ V+YDR GRSLGTA V + K+ A++A +YNG PLD +PM I +V TS +R G Sbjct: 8 MDMSLEDII---KLNKMQQGRRDRPDSRVKRGTGPKRYR-PAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAHVHFERKADALKAMREYNGAPLDGRPMNIHLV-TSQIDRQG 169
BLAST of THO complex subunit 4 vs. Ensembl Mouse
Match: Gm4305 (predicted gene 4305 [Source:MGI Symbol;Acc:MGI:3782485]) HSP 1 Score: 112.849 bits (281), Expect = 1.243e-28 Identity = 69/167 (41.32%), Postives = 99/167 (59.28%), Query Frame = 3 Query: 60 MDQSLDEIIQSKRKNNFNRQQRPKNNSPIKRGRIFKRNSGPIVSFGKAN------------EQWKHDMFKGN-RSSN-MKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETSAFNRVG 518 MD SL++II + N + +R + +S +KRG KR P + G N ++W+HD+F G R N + +G K+ +SNL FGV+D DI LF EFG + ++ V+YDR GRSLGTA V + K+ A++A +YNG PLD +PM I +V TS +R G Sbjct: 8 MDMSLEDII---KLNKMQQGRRDRPDSRVKRGTGPKRYR-PAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAHVHFERKADALKAMREYNGAPLDGRPMNIHLV-TSQIDRQG 169
BLAST of THO complex subunit 4 vs. Ensembl Mouse
Match: Gm4303 (predicted gene 4303 [Source:MGI Symbol;Acc:MGI:3782483]) HSP 1 Score: 112.849 bits (281), Expect = 1.243e-28 Identity = 69/167 (41.32%), Postives = 99/167 (59.28%), Query Frame = 3 Query: 60 MDQSLDEIIQSKRKNNFNRQQRPKNNSPIKRGRIFKRNSGPIVSFGKAN------------EQWKHDMFKGN-RSSN-MKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETSAFNRVG 518 MD SL++II + N + +R + +S +KRG KR P + G N ++W+HD+F G R N + +G K+ +SNL FGV+D DI LF EFG + ++ V+YDR GRSLGTA V + K+ A++A +YNG PLD +PM I +V TS +R G Sbjct: 8 MDMSLEDII---KLNKMQQGRRDRPDSRVKRGTGPKRYR-PAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAHVHFERKADALKAMREYNGAPLDGRPMNIHLV-TSQIDRQG 169
BLAST of THO complex subunit 4 vs. UniProt/SwissProt
Match: sp|Q9JJW6|ALRF2_MOUSE (Aly/REF export factor 2 OS=Mus musculus OX=10090 GN=Alyref2 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.742e-31 Identity = 64/150 (42.67%), Postives = 93/150 (62.00%), Query Frame = 3 Query: 60 MDQSLDEIIQSKR-KNNFNRQQRPKNNSP-IKRGRIFKRNSGPIVSFGKANEQWKHDMFKGNRSSN--MKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 MD SLD+II+ R + NR P+ N P I RG + P ++W+HD+F +++G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + ++ A++A +Y G+PLD +PM I +V + Sbjct: 5 MDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG--GRNRPAPYSRPKPLPDKWQHDLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 152
BLAST of THO complex subunit 4 vs. UniProt/SwissProt
Match: sp|Q58EA2|THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis OX=8355 GN=alyref-a PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 3.045e-29 Identity = 50/99 (50.51%), Postives = 73/99 (73.74%), Query Frame = 3 Query: 207 EQWKHDMFKGN--RSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 ++W+HD+F + M++G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + K+ A++A +YNG+PLD +PM I +V + Sbjct: 85 DKWQHDLFDSGFGAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 183
BLAST of THO complex subunit 4 vs. UniProt/SwissProt
Match: sp|Q28FB9|THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis OX=8364 GN=alyref PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 5.787e-29 Identity = 50/99 (50.51%), Postives = 73/99 (73.74%), Query Frame = 3 Query: 207 EQWKHDMFKGN--RSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 ++W+HD+F + M++G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + K+ A++A +YNG+PLD +PM I +V + Sbjct: 88 DKWQHDLFDSGFGTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 186
BLAST of THO complex subunit 4 vs. UniProt/SwissProt
Match: sp|B5FXN8|THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.026e-28 Identity = 50/99 (50.51%), Postives = 73/99 (73.74%), Query Frame = 3 Query: 207 EQWKHDMFKGN--RSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 E+W+HD+F + +++G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + K+ A++A +YNG+PLD +PM I +V + Sbjct: 82 EKWQHDLFDSGFGAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS 180
BLAST of THO complex subunit 4 vs. UniProt/SwissProt
Match: sp|Q6GLW1|THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis OX=8355 GN=alyref-b PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 7.494e-28 Identity = 49/99 (49.49%), Postives = 72/99 (72.73%), Query Frame = 3 Query: 207 EQWKHDMFKGN--RSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 ++W+HD+F + M++G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + K+ A++A +YNG+PLD + M I +V + Sbjct: 84 DKWQHDLFDSGFGTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTS 182
BLAST of THO complex subunit 4 vs. TrEMBL
Match: A0A4S2MCB1 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002488 PE=4 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.279e-39 Identity = 79/151 (52.32%), Postives = 105/151 (69.54%), Query Frame = 3 Query: 60 MDQSLDEIIQSKRKNNFNRQQRPKNNSP---IKRGRIFKRNSGPIVSFGKAN---EQWKHDMFKGNRSSNMKS-GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVV 491 MD SLD+IIQ RK R R + +P ++RG I +R +G G A ++W+HDMF+G+R S +K+ ISNLDFGV+++DINELF+EFG I RA V+YDRSGRSLGTAEV++LN SA +AR+ YNG+PLD +PM I +V Sbjct: 1 MDLSLDDIIQRNRKQPRGRG-RARGANPLRGVRRGGIARRTTG-----GGARVLPDKWQHDMFQGSRDGRQTSVSNKLHISNLDFGVSNDDINELFREFGAIRRAAVHYDRSGRSLGTAEVVFLNPLSAAKARSHYNGVPLDGRPMVIQLV 145
BLAST of THO complex subunit 4 vs. TrEMBL
Match: A8WDL9 (Transcriptional coactivator OS=Clonorchis sinensis OX=79923 PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 2.457e-39 Identity = 80/151 (52.98%), Postives = 105/151 (69.54%), Query Frame = 3 Query: 60 MDQSLDEIIQSKRKNNFNRQQRPKNNSP---IKRGRIFKRNSGPIVSFGKAN---EQWKHDMFKGNRSSNMKS-GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVV 491 MD SLD+IIQ RK R R + +P ++RG I +R++G G A E+W+HDMF+G R S +K+ ISNLDFGV+++DINELF+EFG I RA V+YDRSGRSLGTAEV++LN SA +AR+ YNG+PLD +PM I +V Sbjct: 1 MDLSLDDIIQRNRKQPRGRG-RARGANPLRGVRRGGIARRSTG-----GGARVLPEKWQHDMFQGGRDGRQTSVSNKLHISNLDFGVSNDDINELFREFGAIRRAAVHYDRSGRSLGTAEVVFLNPLSATKARSHYNGVPLDGRPMVIQLV 145
BLAST of THO complex subunit 4 vs. TrEMBL
Match: A0A074ZZ49 (RRM domain-containing protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=T265_15313 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 4.589e-39 Identity = 80/151 (52.98%), Postives = 105/151 (69.54%), Query Frame = 3 Query: 60 MDQSLDEIIQSKRKNNFNRQQRPKNNSP---IKRGRIFKRNSGPIVSFGKAN---EQWKHDMFKGNRSSNMKS-GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVV 491 MD SLD+IIQ RK R R + +P ++RG I +R++G G A E+W+HDMF+G R S +K+ ISNLDFGV+++DINELF+EFG I RA V+YDRSGRSLGTAEV++LN SA +AR+ YNG+PLD +PM I +V Sbjct: 1 MDLSLDDIIQRNRKQPRGRG-RARGANPLRGVRRGGIARRSTG-----GGARVLPEKWQHDMFQGGRDGRQPSVSNKLHISNLDFGVSNDDINELFREFGAIRRAAVHYDRSGRSLGTAEVVFLNPLSATKARSHYNGVPLDGRPMVIQLV 145
BLAST of THO complex subunit 4 vs. TrEMBL
Match: A0A4S2MBZ3 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002488 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 7.705e-39 Identity = 79/151 (52.32%), Postives = 105/151 (69.54%), Query Frame = 3 Query: 60 MDQSLDEIIQSKRKNNFNRQQRPKNNSP---IKRGRIFKRNSGPIVSFGKAN---EQWKHDMFKGNRSSNMKS-GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVV 491 MD SLD+IIQ RK R R + +P ++RG I +R +G G A ++W+HDMF+G+R S +K+ ISNLDFGV+++DINELF+EFG I RA V+YDRSGRSLGTAEV++LN SA +AR+ YNG+PLD +PM I +V Sbjct: 1 MDLSLDDIIQRNRKQPRGRG-RARGANPLRGVRRGGIARRTTG-----GGARVLPDKWQHDMFQGSRDGRQTSVSNKLHISNLDFGVSNDDINELFREFGAIRRAAVHYDRSGRSLGTAEVVFLNPLSAAKARSHYNGVPLDGRPMVIQLV 145
BLAST of THO complex subunit 4 vs. TrEMBL
Match: A0A419PRX5 (Aly/REF export factor 2 OS=Clonorchis sinensis OX=79923 GN=Alyref2 PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 7.764e-39 Identity = 80/151 (52.98%), Postives = 105/151 (69.54%), Query Frame = 3 Query: 60 MDQSLDEIIQSKRKNNFNRQQRPKNNSP---IKRGRIFKRNSGPIVSFGKAN---EQWKHDMFKGNRSSNMKS-GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVV 491 MD SLD+IIQ RK R R + +P ++RG I +R++G G A E+W+HDMF+G R S +K+ ISNLDFGV+++DINELF+EFG I RA V+YDRSGRSLGTAEV++LN SA +AR+ YNG+PLD +PM I +V Sbjct: 1 MDLSLDDIIQRNRKQPRGRG-RARGANPLRGVRRGGIARRSTG-----GGARVLPEKWQHDMFQGGRDGRQTSVSNKLHISNLDFGVSNDDINELFREFGAIRRAAVHYDRSGRSLGTAEVVFLNPLSATKARSHYNGVPLDGRPMVIQLV 145
BLAST of THO complex subunit 4 vs. Ensembl Cavefish
Match: alyref (Aly/REF export factor [Source:NCBI gene;Acc:103044901]) HSP 1 Score: 110.153 bits (274), Expect = 6.815e-28 Identity = 51/109 (46.79%), Postives = 74/109 (67.89%), Query Frame = 3 Query: 207 EQWKHDMFKGNRSSN------------MKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 ++W+HD+F S+ +++G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + KS A++A +YNG+PLD +PM I +V + Sbjct: 92 DKWQHDLFDNGYSAGAGGGGGGGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKSDALKAMKQYNGVPLDGRPMNIQLVTS 200
BLAST of THO complex subunit 4 vs. Ensembl Cavefish
Match: alyref (Aly/REF export factor [Source:NCBI gene;Acc:103044901]) HSP 1 Score: 110.153 bits (274), Expect = 1.418e-27 Identity = 51/109 (46.79%), Postives = 74/109 (67.89%), Query Frame = 3 Query: 207 EQWKHDMFKGNRSSN------------MKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 ++W+HD+F S+ +++G K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + KS A++A +YNG+PLD +PM I +V + Sbjct: 92 DKWQHDLFDNGYSAGAGGGGGGGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKSDALKAMKQYNGVPLDGRPMNIQLVTS 200
BLAST of THO complex subunit 4 vs. Ensembl Cavefish
Match: poldip3 (polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2]) HSP 1 Score: 54.6842 bits (130), Expect = 5.745e-8 Identity = 31/74 (41.89%), Postives = 41/74 (55.41%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 G KI ++NL V +EDI ELF G + RA + +G AEV+++ K AI A KYN LD +PMK Sbjct: 294 GTKITVNNLHPRVTEEDIVELFCVCGALKRARLV------KVGVAEVVFVRKDDAISAYRKYNNRCLDGQPMKC 361
BLAST of THO complex subunit 4 vs. Ensembl Cavefish
Match: myef2 (myelin expression factor 2 [Source:NCBI gene;Acc:103029356]) HSP 1 Score: 47.7506 bits (112), Expect = 9.687e-6 Identity = 26/81 (32.10%), Postives = 43/81 (53.09%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETSA 503 G + ++NLDF V + + E+F G + RA V D+ G+S G V + A+QA + +NG L ++ M + + E S Sbjct: 219 GSTVFVANLDFKVGWKKLKEVFGMAGTVKRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFNGQMLFDRQMHVKMDEKSV 299
BLAST of THO complex subunit 4 vs. Ensembl Sea Lamprey
Match: poldip3 (polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2]) HSP 1 Score: 59.3066 bits (142), Expect = 3.713e-10 Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 3 Query: 234 GNRSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMV 488 GN + G K+ + NL V++EDI ELF +G + RA + +G AEV+Y+ K AI A KYN LD +PMK + Sbjct: 315 GNTGPSPLEGVKLTVENLHPEVSEEDIVELFSAYGALKRARLV------QVGIAEVVYVRKDDAITAYEKYNNRYLDGQPMKCQL 393
BLAST of THO complex subunit 4 vs. Ensembl Sea Lamprey
Match: myef2 (myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]) HSP 1 Score: 46.9802 bits (110), Expect = 3.830e-6 Identity = 25/74 (33.78%), Postives = 40/74 (54.05%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 G + ++NLD+ V + I E+F G + RA + D+ GRS G +IY A+QA + +NG L + M + Sbjct: 79 GTTVFVTNLDYKVGWKKIKEVFGMAGVVKRAEIKEDKEGRSRGMGVIIYEQPVEALQAISMFNGQLLFERQMHV 152
BLAST of THO complex subunit 4 vs. Ensembl Yeast
Match: GBP2 (Poly(A+) RNA-binding protein; key surveillance factor for the selective export of spliced mRNAs from the nucleus to the cytoplasm; preference for intron-containing genes; similar to Npl3p; also binds single-stranded telomeric repeat sequence in vitro; relocalizes to the cytosol in response to hypoxia; GBP2 has a paralog, HRB1, that arose from the whole genome duplication [Source:SGD;Acc:S000000517]) HSP 1 Score: 48.9062 bits (115), Expect = 4.635e-7 Identity = 23/77 (29.87%), Postives = 46/77 (59.74%), Query Frame = 3 Query: 252 MKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 + +G ++ I NL + +N + + ++FKE G + RA V D +G S G VIY + I+A + +NG+ ++ + +++ Sbjct: 215 IDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEV 291
BLAST of THO complex subunit 4 vs. Ensembl Nematostella
Match: EDO34287 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SPU8]) HSP 1 Score: 90.5077 bits (223), Expect = 4.150e-22 Identity = 40/66 (60.61%), Postives = 54/66 (81.82%), Query Frame = 3 Query: 267 KIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLD 464 K+ ISNLDFGV+D DI+ELF EFGQ+ R+ V+YD SGRS GTA+V+++ + +A QA +YNG+PLD Sbjct: 94 KLSISNLDFGVSDSDISELFSEFGQVKRSCVHYDASGRSHGTAKVVFVKRKNAQQALKQYNGVPLD 159
BLAST of THO complex subunit 4 vs. Ensembl Medaka
Match: ALYREF (THO complex subunit 4 [Source:NCBI gene;Acc:101161973]) HSP 1 Score: 105.531 bits (262), Expect = 3.437e-26 Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 3 Query: 207 EQWKHDMFKGNRSSNMKSGH-----------KIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 ++W+HDMF S + K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + ++ A++A +YNGIPLD +PM I +V + Sbjct: 86 DKWQHDMFDNGFSGFNGAAGGGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQYNGIPLDGRPMNIQLVTS 193
BLAST of THO complex subunit 4 vs. Ensembl Medaka
Match: ALYREF (THO complex subunit 4 [Source:NCBI gene;Acc:101161973]) HSP 1 Score: 105.145 bits (261), Expect = 3.620e-26 Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 3 Query: 207 EQWKHDMFKGNRSSNMKSGH-----------KIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVET 497 ++W+HDMF S + K+ +SNLDFGV+D DI ELF EFG + +A V+YDRSGRSLGTA+V + ++ A++A +YNGIPLD +PM I +V + Sbjct: 73 DKWQHDMFDNGFSGFNGAAGGGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQYNGIPLDGRPMNIQLVTS 180
BLAST of THO complex subunit 4 vs. Ensembl Medaka
Match: ENSORLT00000002011.2 (THO complex subunit 4 [Source:NCBI gene;Acc:101175372]) HSP 1 Score: 99.3673 bits (246), Expect = 1.643e-23 Identity = 55/136 (40.44%), Postives = 83/136 (61.03%), Query Frame = 3 Query: 96 RKNNFNRQQRPKNNSPIKRGRIFKRNSGPIVSFGKANEQWKHDMF----KGNRSSNMK-------SGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNK 470 R++NF+R+ R +P R R + ++W+HDMF +G R+ + + S K+ ISNLDFGV+D DI +LF+EFG + +A ++YDRSGRS G AEV ++NK+ A++A YNG+PLD + Sbjct: 47 RQSNFSRE-RTNRPAPYTRPR-------------ELPDKWQHDMFEEHSRGPRAQSPEADDSFGGSSSKLLISNLDFGVSDSDIKDLFEEFGTLKKASIHYDRSGRSKGVAEVHFVNKADALKAMKHYNGVPLDGE 168
BLAST of THO complex subunit 4 vs. Ensembl Medaka
Match: poldip3 (DNA polymerase delta interacting protein 3 [Source:NCBI gene;Acc:101156823]) HSP 1 Score: 54.299 bits (129), Expect = 7.218e-8 Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 G KI ++NL V +EDI ELF G + RA + +G AEV+++ K A+ A KYN LD +PMK Sbjct: 236 GTKITVNNLHPRVTEEDIVELFCVCGALKRARLV------KVGVAEVVFVRKEDAVSAYRKYNNRCLDGQPMKC 303
BLAST of THO complex subunit 4 vs. Ensembl Medaka
Match: poldip3 (DNA polymerase delta interacting protein 3 [Source:NCBI gene;Acc:101156823]) HSP 1 Score: 53.9138 bits (128), Expect = 9.333e-8 Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 3 Query: 261 GHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKI 482 G KI ++NL V +EDI ELF G + RA + +G AEV+++ K A+ A KYN LD +PMK Sbjct: 324 GTKITVNNLHPRVTEEDIVELFCVCGALKRARLV------KVGVAEVVFVRKEDAVSAYRKYNNRCLDGQPMKC 391
BLAST of THO complex subunit 4 vs. Planmine SMEST
Match: SMESG000055869.1 (SMESG000055869.1) HSP 1 Score: 273.863 bits (699), Expect = 1.227e-92 Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 3 Query: 183 IVSFGKANEQWKHDMFKGNRSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETSAFNRVGXXXXXXXXXXXXXXXXXXXXXXTRSNPPQLXXXXXXXXXXXQKVAKTKEQLDAEMDEYLSKTG 707 + FGKANEQWKHDMFKGNRSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETSAFNRVGNFPRNNQTNNNQRQMNNGNNFRTRSNPPQLGRNNSGRGNRNQKVAKTKEQLDAEMDEYLSKTG Sbjct: 13 LAQFGKANEQWKHDMFKGNRSSNMKSGHKIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRSGRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIMVVETSAFNRVGNFPRNNQTNNNQRQMNNGNNFRTRSNPPQLGRNNSGRGNRNQKVAKTKEQLDAEMDEYLSKTG 187
BLAST of THO complex subunit 4 vs. Planmine SMEST
Match: SMESG000042249.1 (SMESG000042249.1) HSP 1 Score: 50.0618 bits (118), Expect = 1.307e-6 Identity = 23/74 (31.08%), Postives = 45/74 (60.81%), Query Frame = 3 Query: 267 KIQISNLDFGVNDEDINELFKEFGQISRAGVNYDRS-GRSLGTAEVIYLNKSSAIQARNKYNGIPLDNKPMKIM 485 ++ + NL++ V + DI E+FKEFG ++ + YD + R +G A + YL + A++A + +PL ++ + I+ Sbjct: 107 RLYVRNLNYDVTEADIVEMFKEFGDLAEVHLPYDLNLKRPMGYAFISYLLHTDAVKAFKALDKMPLKSRKIHIL 180 The following BLAST results are available for this feature:
BLAST of THO complex subunit 4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of THO complex subunit 4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 4
BLAST of THO complex subunit 4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of THO complex subunit 4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of THO complex subunit 4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of THO complex subunit 4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of THO complex subunit 4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of THO complex subunit 4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of THO complex subunit 4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 4
BLAST of THO complex subunit 4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of THO complex subunit 4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of THO complex subunit 4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of THO complex subunit 4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of THO complex subunit 4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30021142 ID=SMED30021142|Name=THO complex subunit 4|organism=Schmidtea mediterranea sexual|type=transcript|length=971bpback to top protein sequence of SMED30021142-orf-1 >SMED30021142-orf-1 ID=SMED30021142-orf-1|Name=SMED30021142-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=217bp MDQSLDEIIQSKRKNNFNRQQRPKNNSPIKRGRIFKRNSGPIVSFGKANEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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