Sorting and assembly machinery component 50 homolog

Overview
NameSorting and assembly machinery component 50 homolog
Smed IDSMED30021129
Length (bp)1495
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Sorting and assembly machinery component 50 homolog (SMED30021129) t-SNE clustered cells

Violin plots show distribution of expression levels for Sorting and assembly machinery component 50 homolog (SMED30021129) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Sorting and assembly machinery component 50 homolog (SMED30021129) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Sorting and assembly machinery component 50 homolog (SMED30021129) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30021129

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30021129SMESG000079491.1 SmedASXL_019617SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30021129SMESG000079491.1 SmedASXL_019617SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Human
Match: SAMM50 (SAMM50 sorting and assembly machinery component [Source:HGNC Symbol;Acc:HGNC:24276])

HSP 1 Score: 194.897 bits (494), Expect = 7.612e-56
Identity = 142/459 (30.94%), Postives = 215/459 (46.84%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVP-IEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+  V  DG+  T  + I  ++   ++F AK++ EV+ +    +E+L  L IF+ V V  D C+   +D   N LDV F V E +        M G +N   + L +  PNL GRA K+   +         +  +  KP  G     F++  +  T    WS   E+  G   E S       H  + E +WRE+    +     V KE+GHS+KSS+ H    D+R+  I P  G      QEL       G  GG  +S I    E +L K +     V   +   G++  +  + ++  IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G +A          ++     IR + G GI+ +L N  R+ELNYC+P+  Q  DR+  G QFG GI +
Sbjct:   45 VVVQHVHFDGLGRTKDDIIICEIG--DVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQG--DDALPNGLDVTFEVTELRRLTGSYNTMVG-NNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETS-YGLSFFKPRPGNFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFPIWKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQEL------AGYTGGD-VSFIKEDFELQLNKQLIFDS-VFSASFWGGMLVPIGDKPSS--IADRFYLGGPTSIRGFSMHSIGPQSEGDY-LGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAG---------NLCNLNYGEGPKA---------HIRKLAECIRWSYGAGIVLRLGNIARLELNYCVPMGVQTGDRICDGVQFGAGIRF 468
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Celegans
Match: gop-3 (SAM50-like protein gop-3 [Source:UniProtKB/Swiss-Prot;Acc:P46576])

HSP 1 Score: 100.523 bits (249), Expect = 1.260e-22
Identity = 103/466 (22.10%), Postives = 181/466 (38.84%), Query Frame = 3 
Query:   54 VPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAANLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDH--WWSRFVESSMGGFGEVSLKTGCGQ-------HQFRMETMWREIMAKEKVPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPL-PFFSKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGI 1421
            VP ++  V   G++ T ++ + K++    L+ +K++ E++         L+E+ +        D      E    N    F V E K+     KA    +    ++L     ++ GR   ++  Y   V G   ++ + IKP  G  +      +   +  H  W    V+ +       ++    GQ       HQ ++  +WR + A       V ++ GH++K S+++    DTRD  I    G      QE        G  G +      + L+A     +    F+L  +     ++ +   E  V I DR ++GG   +RGF L ++G +  D   +G    L    H+Y PL P        ++   H FL S    S                        +++ VQ      R++ G G+ F   + FR+ELNY  PL+    D ++ GF  G G+
Sbjct:   19 VPSIVEAVQFHGVRITKNDALVKEV--SELYRSKNLDELVHNSHLAARHLQEVGLMDNAVALIDTSPSSNEGYVVN----FLVREPKSFTAGVKAGVSTNGDADVSLNAGKQSVGGRGEAINTQYTYTVKGDHCFNISAIKPFLGWQKYSNVSATLYRSLAHMPWNQSDVDEN------AAVLAYNGQLWNQKLLHQVKLNAIWRTLRATRDAAFSVREQAGHTLKFSLENAVAVDTRDRPILASRGILARFAQEY------AGVFGDASFVKNTLDLQAAAPLPLG---FILAASFQAKHLKGLGDRE--VHILDRCYLGGQQDVRGFGLNTIG-VKADNSCLGGGASLAGVVHLYRPLIP-------PNMLFAHAFLASGSVASVH----------------------SKNLVQQLQDTQRVSAGFGLAFVFKSIFRLELNYTYPLKYVLGDSLLGGFHIGAGV 431
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Celegans
Match: gop-3 (SAM50-like protein gop-3 [Source:UniProtKB/Swiss-Prot;Acc:P46576])

HSP 1 Score: 100.523 bits (249), Expect = 1.260e-22
Identity = 103/466 (22.10%), Postives = 181/466 (38.84%), Query Frame = 3 
Query:   54 VPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAANLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDH--WWSRFVESSMGGFGEVSLKTGCGQ-------HQFRMETMWREIMAKEKVPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPL-PFFSKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGI 1421
            VP ++  V   G++ T ++ + K++    L+ +K++ E++         L+E+ +        D      E    N    F V E K+     KA    +    ++L     ++ GR   ++  Y   V G   ++ + IKP  G  +      +   +  H  W    V+ +       ++    GQ       HQ ++  +WR + A       V ++ GH++K S+++    DTRD  I    G      QE        G  G +      + L+A     +    F+L  +     ++ +   E  V I DR ++GG   +RGF L ++G +  D   +G    L    H+Y PL P        ++   H FL S    S                        +++ VQ      R++ G G+ F   + FR+ELNY  PL+    D ++ GF  G G+
Sbjct:   19 VPSIVEAVQFHGVRITKNDALVKEV--SELYRSKNLDELVHNSHLAARHLQEVGLMDNAVALIDTSPSSNEGYVVN----FLVREPKSFTAGVKAGVSTNGDADVSLNAGKQSVGGRGEAINTQYTYTVKGDHCFNISAIKPFLGWQKYSNVSATLYRSLAHMPWNQSDVDEN------AAVLAYNGQLWNQKLLHQVKLNAIWRTLRATRDAAFSVREQAGHTLKFSLENAVAVDTRDRPILASRGILARFAQEY------AGVFGDASFVKNTLDLQAAAPLPLG---FILAASFQAKHLKGLGDRE--VHILDRCYLGGQQDVRGFGLNTIG-VKADNSCLGGGASLAGVVHLYRPLIP-------PNMLFAHAFLASGSVASVH----------------------SKNLVQQLQDTQRVSAGFGLAFVFKSIFRLELNYTYPLKYVLGDSLLGGFHIGAGV 431
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Fly
Match: CG7639 (gene:FBgn0033989 transcript:FBtr0087424)

HSP 1 Score: 151.754 bits (382), Expect = 2.187e-40
Identity = 124/478 (25.94%), Postives = 205/478 (42.89%), Query Frame = 3 
Query:   42 DLNEVPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAANLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPL--------------EGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCG---QHQFRMETMWREI-MAKEKVPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFFSK-DGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIG 1418
            DL+++   + +V++ G+  T+++++ +    + LF A +  +++ E  S K  L EL IFK V+V  D   +  +      +V F   E       A    G  N   L  E+  PN+ GR          N+   G +S+T    L              E  P + F++   +  FD   S F  +++G   + S  T  G    H  + E   R++ +  + VP  +    G  + S +++    D RD  ++P  G       E             +    +N+ L A L      +  V++ T N           T +PI+  F+ GGPLT+RGF+    GP+  +  PIG+  +   G H+++PLPF       +S FR+H+F       S     S+ N                          +R   G+G+  KLA   RIELNYC+P+R+Q++DR+++GFQFGIG
Sbjct:   17 DLSKISARVDRVNVSGLLRTHNDYVMRAA--DGLFKASNFQDLMLEAMSTKSYLHELGIFKDVSVHID-VSRGADASPQGYEVTFKGNEMSRMMGSAGTEIG-QNEGSLRTELTIPNILGRG--------ENISLQGSYSSTRANDLQLKFWKPFFHTRFKENRPEMSFSIFRQTDRFD--ISSFQTTNIGYLVDFSAHTMVGVDLTHSLQYENAIRDVGLLNKSVPFAIRDHCGPKLASLLRYSVVYDNRDGNVFPTRGIYLKSVNEYCGLGGNVAYTSSTAHGELNVPLFAGLVAQFCARVGVVKETKN----------TTQLPISSLFYCGGPLTLRGFKFGGAGPVV-ESTPIGAQSFWCTGAHLWAPLPFAGVFKNLASHFRMHFFYNIGNNNS----FSTEN--------------------------MRSAFGMGLAVKLAERARIELNYCVPVRHQDTDRILNGFQFGIG 439
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Zebrafish
Match: samm50l (sorting and assembly machinery component 50 homolog, like [Source:NCBI gene;Acc:492471])

HSP 1 Score: 198.749 bits (504), Expect = 1.375e-57
Identity = 144/461 (31.24%), Postives = 217/461 (47.07%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEK-VPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVP--IADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFFS-KDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+  V+I+G+  T  +++  ++   ++F+A+++ EV+ +    ++RL  L IF+ V V  D  E    D   N LDV F V E K        M G +N   + L +  PN+ GR  KL   +         +  +  KP  G     F +  +  T    WS   E+  G   E+S       H  + E +WRE+    +     V +E+GH++KS++ H    DTR+  I P  G      QEL      + N          +K + ELQ +   KQF+  + ++  L   M +     P  IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF S K G + LFR H+FL +          +  N N   G RA          +Q     IR + G GII +L N  R+ELNYC P+  Q+ DR+  G QFG GI +
Sbjct:   37 VVVQHVNIEGLGRTKEDYLGYEIS--DVFTARNLVEVMRKSHEARQRLLRLGIFRDVEVVIDISEG--ADALPNGLDVTFEVTELKRLTGSYNTMVG-NNEGSMVLGIKLPNMLGRGEKLTFQFSYGTKETS-YGLSFFKPQSGYFERNFTVNLYKVTGQFPWSSLKETDRGVSTELSFPLWMTDHTLKWEGVWRELGCLARSASFAVREESGHTLKSALSHTMVVDTRNSAILPRKGALLRINQELAGYTGGDANF---------LKEDVELQLN---KQFIWGSVLSASLWGGMIYPLGAQPTSIADRFYLGGPTSVRGFGMYSIGPQSEGDY-LGGEAYWAGGLHLYTPLPFRSNKGGLADLFRTHFFLNAG---------NICNLNYGEGPRA---------HLQKLAECIRWSYGAGIILRLGNIARLELNYCFPMGVQSGDRICDGVQFGAGIRF 460
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Zebrafish
Match: samm50l (sorting and assembly machinery component 50 homolog, like [Source:NCBI gene;Acc:492471])

HSP 1 Score: 198.749 bits (504), Expect = 1.530e-57
Identity = 144/461 (31.24%), Postives = 217/461 (47.07%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEK-VPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVP--IADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFFS-KDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+  V+I+G+  T  +++  ++   ++F+A+++ EV+ +    ++RL  L IF+ V V  D  E    D   N LDV F V E K        M G +N   + L +  PN+ GR  KL   +         +  +  KP  G     F +  +  T    WS   E+  G   E+S       H  + E +WRE+    +     V +E+GH++KS++ H    DTR+  I P  G      QEL      + N          +K + ELQ +   KQF+  + ++  L   M +     P  IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF S K G + LFR H+FL +          +  N N   G RA          +Q     IR + G GII +L N  R+ELNYC P+  Q+ DR+  G QFG GI +
Sbjct:   45 VVVQHVNIEGLGRTKEDYLGYEIS--DVFTARNLVEVMRKSHEARQRLLRLGIFRDVEVVIDISEG--ADALPNGLDVTFEVTELKRLTGSYNTMVG-NNEGSMVLGIKLPNMLGRGEKLTFQFSYGTKETS-YGLSFFKPQSGYFERNFTVNLYKVTGQFPWSSLKETDRGVSTELSFPLWMTDHTLKWEGVWRELGCLARSASFAVREESGHTLKSALSHTMVVDTRNSAILPRKGALLRINQELAGYTGGDANF---------LKEDVELQLN---KQFIWGSVLSASLWGGMIYPLGAQPTSIADRFYLGGPTSVRGFGMYSIGPQSEGDY-LGGEAYWAGGLHLYTPLPFRSNKGGLADLFRTHFFLNAG---------NICNLNYGEGPRA---------HLQKLAECIRWSYGAGIILRLGNIARLELNYCFPMGVQSGDRICDGVQFGAGIRF 468
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Zebrafish
Match: samm50 (SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:393111])

HSP 1 Score: 197.208 bits (500), Expect = 7.295e-57
Identity = 143/459 (31.15%), Postives = 223/459 (48.58%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVP-IEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+  V IDG+  T  + +  ++   ++F AK++ +V+ +    +++L  L IF+ V V  D  E    D   N LDV F V+E +        M G +N   + L +  PN+ GRA KL   +         +  +  KP  G     F+L  +  T    WS   E+  G   E+S       H  + E +WRE+    +     V +E+GHS+KSS+ H    DTR+  I P  G      QEL       G  GG  +S +    E +L K++     VL  ++  G++  +  + ++  IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G RA  ++++ +         IR + G GI+ +L N  R+ELNYCIP+  Q+ DR+  G QFG GI +
Sbjct:   45 VVVQHVHIDGLGRTKEDILTYEIA--DVFHAKNLIDVMKKSHEARQKLLRLGIFRHVEVVIDTAEG--ADALPNGLDVTFEVKELRRMTGSYNTMVG-NNEGSMVLGIKLPNVLGRAEKLTFQFSYGTKETS-YGLSFFKPQPGHFERNFSLNLYKVTGQFPWSSLRETDRGVSAEISFPIWRTSHTLKWEGVWRELGCLARTASFAVREESGHSLKSSLAHAMVIDTRNSTILPRKGALLKINQEL------AGYTGGD-VSFLKEDFEIQLNKTLFWDS-VLSTSLWGGMLLPLGEKASS--IADRFYLGGPTSVRGFSMYSIGPQSEGDY-LGGEAYWAGGVHLYTPLPFRPGRGGFGDLFRTHFFLNAG---------NLCNLNYGEGPRA-HLSKLAE--------CIRWSYGAGIVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRF 468
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Xenopus
Match: samm50 (SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:394743])

HSP 1 Score: 80.4925 bits (197), Expect = 4.863e-16
Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 3 
Query: 1056 IGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G RA  + R+ +         IR + G GI+ +L N  R+ELNYCIP+  Q+ DR+  G QFG GI +
Sbjct:  208 LGGEAYWAGGMHLYTPLPFRPGRGGFGDLFRTHFFLNAG---------NLCNLNYGEGPRA-HLRRLAE--------CIRWSYGAGIVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRF 314

HSP 2 Score: 66.2402 bits (160), Expect = 2.444e-11
Identity = 52/179 (29.05%), Postives = 82/179 (45.81%), Query Frame = 3 
Query:   57 PVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVS 590
            P+ IG+V  +G+  T  + I  ++    +F AK++ EV+ +    +E+L  L +F+ V V  D CE   ED   N LDV F V E +        M G +N   + L +  PNLFGRA K+   +         +  +  KP  G     F++  +  T    WS   E+  G   E++
Sbjct:   11 PLPIGRVHFEGLGRTKDDLIAHEIGQ--VFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEG--EDALPNGLDVTFEVTELRRLTGSYNTMVG-NNEGSMVLGLKLPNLFGRAEKMTFQFSYGTKET-SYGLSFFKPQVGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEIN 183
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Xenopus
Match: samm50 (SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:394743])

HSP 1 Score: 80.1073 bits (196), Expect = 5.323e-16
Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 3 
Query: 1056 IGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G RA  + R+ +         IR + G GI+ +L N  R+ELNYCIP+  Q+ DR+  G QFG GI +
Sbjct:  200 LGGEAYWAGGMHLYTPLPFRPGRGGFGDLFRTHFFLNAG---------NLCNLNYGEGPRA-HLRRLAE--------CIRWSYGAGIVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRF 306

HSP 2 Score: 55.8398 bits (133), Expect = 6.294e-8
Identity = 47/158 (29.75%), Postives = 71/158 (44.94%), Query Frame = 3 
Query:  126 MQHE--NLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVS 590
            + HE   +F AK++ EV+ +    +E+L  L +F+ V V  D CE   ED   N LDV F V E +        M G +N   + L +  PNLFGRA K+   +         +  +  KP  G     F++  +  T    WS   E+  G   E++
Sbjct:   22 IAHEIGQVFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEG--EDALPNGLDVTFEVTELRRLTGSYNTMVG-NNEGSMVLGLKLPNLFGRAEKMTFQFSYGTKET-SYGLSFFKPQVGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEIN 175
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Xenopus
Match: samm50 (SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:394743])

HSP 1 Score: 79.7221 bits (195), Expect = 1.245e-15
Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 3 
Query: 1056 IGSNFYLQHGFHVYSPLPFFS-KDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G RA  + R+ +         IR + G GI+ +L N  R+ELNYCIP+  Q+ DR+  G QFG GI +
Sbjct:  253 LGGEAYWAGGMHLYTPLPFRPGRGGFGDLFRTHFFLNAG---------NLCNLNYGEGPRA-HLRRLAEC--------IRWSYGAGIVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRF 359

HSP 2 Score: 55.0694 bits (131), Expect = 1.261e-7
Identity = 46/152 (30.26%), Postives = 68/152 (44.74%), Query Frame = 3 
Query:  126 MQHE--NLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMG 572
            + HE   +F AK++ EV+ +    +E+L  L +F+ V V  D CE   ED   N LDV F V E +        M G +N   + L +  PNLFGRA K+   +         +  +  KP  G     F++  +  T    WS   E+  G
Sbjct:    7 IAHEIGQVFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEG--EDALPNGLDVTFEVTELRRLTGSYNTMVG-NNEGSMVLGLKLPNLFGRAEKMTFQFSYGTKET-SYGLSFFKPQVGNFERNFSVNLYKVTGQFPWSSLRETDRG 154
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Mouse
Match: Samm50 (SAMM50 sorting and assembly machinery component [Source:MGI Symbol;Acc:MGI:1915903])

HSP 1 Score: 200.29 bits (508), Expect = 5.360e-58
Identity = 145/459 (31.59%), Postives = 216/459 (47.06%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVP-IEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+  V  DG+  T  + I  ++    +F AK++ EV+      +E+L  L IF+ V V  D C    ED   N LDV F V E +        M G +N   + L +  PNL GRA K+   +         +  +  KP  G     F++  +  T    WS   E+  G   E S       H  + E +WRE+    +     V KE+GHS+KSS+ H    D+R+  I P  G  F   QEL       G  GG  +S I    E +L K ++L   V   ++  G++  +  + ++  IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G +A          ++     IR + G G++ +L N  R+ELNYCIP+  Q  DR+  G QFG GI +
Sbjct:   45 VVVQHVHFDGLGRTKDDIIICEIGE--VFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTCHG--EDALPNGLDVTFEVTELRRLTGSYNTMVG-NNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETS-YGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFPLWKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALFKVNQEL------AGYTGGD-VSFIKEDFELQLNKPLALDS-VFSTSLWGGMLVPIGDKPSS--IADRFYLGGPTSVRGFSMHSIGPQSEGDY-LGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAG---------NLCNLNYGEGPKA---------HIRKLAECIRWSYGAGVVLRLGNIARLELNYCIPMGVQGGDRICDGVQFGAGIRF 468
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. UniProt/SwissProt
Match: sp|Q6P806|SAM50_XENTR (Sorting and assembly machinery component 50 homolog OS=Xenopus tropicalis OX=8364 GN=samm50 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.342e-57
Identity = 142/459 (30.94%), Postives = 224/459 (48.80%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVP-IEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+ +V  +G+  T  + I  ++    +F AK++ EV+ +    +E+L  L +F+ V V  D CE   ED   N LDV F V E +        M G +N   + L +  PNLFGRA K+   +         +  +  KP  G     F++  +  T    WS   E+  G   E++       H  + E +WRE+    +     + +E+GH++KSS+ H    D+R+  I P+ G      QEL       G  GG  +S +    E +L K ++    VL  ++  G++  +  + ++  IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G RA  + R+ +         IR + G GI+ +L N  R+ELNYCIP+  Q+ DR+  G QFG GI +
Sbjct:   44 VVVQRVHFEGLGRTKDDLIAHEIGQ--VFKAKNLIEVMRKSHEAREKLLRLGVFRNVEVLIDTCEG--EDALPNGLDVTFEVTELRRLTGSYNTMVG-NNEGSMVLGLKLPNLFGRAEKMTFQFSYGTKETS-YGLSFFKPQVGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEINFPIWKTSHTLKWEGVWRELGCLARTASFAIREESGHTLKSSLSHTMVIDSRNTSILPKRGALLKINQEL------AGYTGGD-VSFLKEDFELQLNKQLAWDS-VLSTSLWGGMLVPIGDKPSS--IADRFYLGGPTSVRGFSMYSIGPQSEGDY-LGGEAYWAGGMHLYTPLPFRPGRGGFGDLFRTHFFLNAG---------NLCNLNYGEGPRA-HLRRLAE--------CIRWSYGAGIVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRF 467
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. UniProt/SwissProt
Match: sp|Q5U3I0|SAM5B_DANRE (Sorting and assembly machinery component 50 homolog B OS=Danio rerio OX=7955 GN=samm50b PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.672e-57
Identity = 145/461 (31.45%), Postives = 218/461 (47.29%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEK-VPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVP--IADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFFS-KDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+  V+I+G+  T  +++  ++   ++F+A+++ EV+ +    ++RL  L IF+ V V  D  E    D   N LDV F V E K        M G +N   + L +  PN+ GR  KL   +         +  +  KP  G     F +  +  T    WS   E+  G   E+SL      H  + E +WRE+    +     V +E+GH++KS++ H    DTR+  I P  G      QEL      + N          +K + ELQ +   KQF+  + ++  L   M +     P  IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF S K G + LFR H+FL +          +  N N   G RA          +Q     IR + G GII +L N  R+ELNYC P+  Q+ DR+  G QFG GI +
Sbjct:   45 VVVQHVNIEGLGRTKEDYLGYEIS--DVFTARNLVEVMRKSHEARQRLLRLGIFRDVEVVIDISEG--ADALPNGLDVTFEVTELKRLTGSYNTMVG-NNEGSMVLGIKLPNMLGRGEKLTFQFSYGTKETS-YGLSFFKPQSGYFERNFTVNLYKVTGQFPWSSLKETDRGVSTELSLPLWMTDHTLKWEGVWRELGCLARSASFAVREESGHTLKSALSHTMVVDTRNSAILPRKGALLRINQELAGYTGGDANF---------LKEDVELQLN---KQFIWGSVLSASLWGGMIYPLGAQPTSIADRFYLGGPTSVRGFGMYSIGPQSEGDY-LGGEAYWAGGLHLYTPLPFRSNKGGLADLFRTHFFLNAG---------NICNLNYGEGPRA---------HLQKLAECIRWSYGAGIILRLGNIARLELNYCFPMGVQSGDRICDGVQFGAGIRF 468
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. UniProt/SwissProt
Match: sp|Q8BGH2|SAM50_MOUSE (Sorting and assembly machinery component 50 homolog OS=Mus musculus OX=10090 GN=Samm50 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.750e-57
Identity = 145/459 (31.59%), Postives = 216/459 (47.06%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVP-IEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+  V  DG+  T  + I  ++    +F AK++ EV+      +E+L  L IF+ V V  D C    ED   N LDV F V E +        M G +N   + L +  PNL GRA K+   +         +  +  KP  G     F++  +  T    WS   E+  G   E S       H  + E +WRE+    +     V KE+GHS+KSS+ H    D+R+  I P  G  F   QEL       G  GG  +S I    E +L K ++L   V   ++  G++  +  + ++  IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G +A          ++     IR + G G++ +L N  R+ELNYCIP+  Q  DR+  G QFG GI +
Sbjct:   45 VVVQHVHFDGLGRTKDDIIICEIGE--VFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTCHG--EDALPNGLDVTFEVTELRRLTGSYNTMVG-NNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETS-YGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFPLWKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALFKVNQEL------AGYTGGD-VSFIKEDFELQLNKPLALDS-VFSTSLWGGMLVPIGDKPSS--IADRFYLGGPTSVRGFSMHSIGPQSEGDY-LGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAG---------NLCNLNYGEGPKA---------HIRKLAECIRWSYGAGVVLRLGNIARLELNYCIPMGVQGGDRICDGVQFGAGIRF 468
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. UniProt/SwissProt
Match: sp|Q6AXV4|SAM50_RAT (Sorting and assembly machinery component 50 homolog OS=Rattus norvegicus OX=10116 GN=Samm50 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 7.940e-57
Identity = 146/459 (31.81%), Postives = 215/459 (46.84%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVP-IEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+  V  DG++ T  + I  ++    +F AK++ EV+      +E+L  L IF+ V V  D C    ED   N LDV F V E +        M G +N   + L +  PNL GRA K+   +         +  +  KP  G     F++  +  T    WS   E+  G   E S       H  + E +WRE+    +     V KE+GHS+KSS+ H    D+R+  I P  G      QEL       G  GG  +S I    E +L K + L   V   ++  G++  +  + ++  IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G RA          ++     IR + G GI+ +L N  R+ELNYCIP+  Q  DR+  G QFG GI +
Sbjct:   45 VVVQHVHFDGLERTKDDIIICEIGE--VFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTCHG--EDALPNGLDVTFEVTELRRLTGSYNTMVG-NNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETS-YGLSFFKPQPGNFEKNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFPLCKTSHTVKWEGVWRELGCLARTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQEL------AGYTGGD-VSFIKEDFELQLNKPLVLDS-VFSTSLWGGMLVPIGDKLSS--IADRFYLGGPTSVRGFSMHSIGPQSEGDY-LGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAG---------NLCNLNYGEGPRA---------HIRKLAECIRWSYGAGIVLRLGNIARLELNYCIPMGVQRGDRICDGVQFGAGIRF 468
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. UniProt/SwissProt
Match: sp|Q803G5|SAM5A_DANRE (Sorting and assembly machinery component 50 homolog A OS=Danio rerio OX=7955 GN=samm50a PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.437e-56
Identity = 143/459 (31.15%), Postives = 222/459 (48.37%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVP-IEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+  V IDG+  T  + +  ++   ++F AK++ +V+ +    +++L  L IF+ V V  D  E    D   N LDV F V E +        M G +N   + L +  PN+ GRA KL   +         +  +  KP  G     F+L  +  T    WS   E+  G   E+S       H  + E +WRE+    +     V +E+GHS+KSS+ H    DTR+  I P  G      QEL       G  GG  +S +    E +L K++     VL  ++  G++  +  + ++  IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G RA  ++++ +         IR + G GI+ +L N  R+ELNYCIP+  Q+ DR+  G QFG GI +
Sbjct:   45 VVVQHVHIDGLGRTKEDILTYEIA--DVFHAKNLIDVMKKSHEARQKLLRLGIFRHVEVVIDTAEG--ADALPNGLDVTFEVRELRRMTGSYNTMVG-NNEGSMVLGIKLPNVLGRAEKLTFQFSYGTKETS-YGLSFFKPQPGHFERNFSLNLYKVTGQFPWSSLRETDRGVSAEISFPIWRTSHTLKWEGVWRELGCLARTASFAVREESGHSLKSSLAHAMVIDTRNSTILPRKGALLKINQEL------AGYTGGD-VSFLKEDFEIQLNKTLFWDS-VLSTSLWGGMLLPLGEKASS--IADRFYLGGPTSVRGFSMYSIGPQSEGDY-LGGEAYWAGGVHLYTPLPFRPGRGGFGDLFRTHFFLNAG---------NLCNLNYGEGPRA-HLSKLAE--------CIRWSYGAGIVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRF 468
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. TrEMBL
Match: A0A0X3P667 (Bac_surface_Ag domain-containing protein (Fragment) OS=Schistocephalus solidus OX=70667 GN=TR11286 PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.988e-64
Identity = 166/502 (33.07%), Postives = 244/502 (48.61%), Query Frame = 3 
Query:   51 EVPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAANLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEK-VPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGS--------------RLSN-INMKLEAELQKSISLKQFVL-ENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTN--DGYPIGSNFYLQ----------------------HGFHVYSPLPFF--SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            EVPV +  V   G++ T+ EF+KKQ+    L  +K++ E+L     +K+ L  L IF +V +  D   K   D A    V F V+E K +  +A+     D ++ L       N+F +  +L  +           SAT  KPLE  P + F+ G    T+DHWWSRF+      F E    +  G H+     +WRE+ A  +  P  V  E+G SM+ +++H    DTR DRI+P++G      +++     T G  G                 +SN I ++LE+ LQ    L  +++ E T + GL+ S+T     V IADRFF+GGPL  RGF+   +GP        P+ S F L+                       G H YSPLP +  ++D   SLFRLH F   A+T S   L+S P   +A+  RA+S+ + N+      +RP R   G G+I + A   R+ELNYC+P+ +Q  D V SGFQ GIG+ Y
Sbjct:   18 EVPVFVTDVYFFGLRKTDPEFLKKQL--PCLVKSKNLRELLRNCSELKQMLMNLNIFHSVQLAVDVDSKSAVDDAYK--VSFVVQERKPQTLKAQWTVNTDGAMRLGGYYSLNNIFRKGERLQIDVSMGRDASALRSATFTKPLEKNPTMFFSFGGSEGTYDHWWSRFMRHEKSLFAEFLAPSRFGVHRLSWSYLWRELEASGRNTPWAVRMESGQSMRMNLRHQLEFDTRSDRIFPDDGLLLRLAKDI--TFITPGPPGAGVNNEDEPARGTSVLPISNAIQLRLESLLQCPFRLTSWLVGELTFSTGLVHSLTRHP--VSIADRFFLGGPLDFRGFKFCGLGPSEPLLVPRPVNSEFLLEPAPQPADDDIHRSPVGALGSWLAGAHFYSPLPLWGAAQDSMGSLFRLHAF---AMTGS---LVSDP---VAAAKRALSLGQYNRLMEFLDIRP-RYVLGAGLILRFAQMARLELNYCLPMSSQPGDGVQSGFQLGIGVSY 501
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. TrEMBL
Match: A0A5K3FBF7 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 5.556e-64
Identity = 157/503 (31.21%), Postives = 246/503 (48.91%), Query Frame = 3 
Query:   48 NEVPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAANLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEK----VPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQEL--FSDMTTEGNIGGSRLS----------NINMKLEAELQKSISLKQF-VLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGP----LT----------------NDGYPIGSNFYLQHGFHVYSPLPFF--SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPI----RMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            ++VPV +  VS  G++ TN +F+++Q+   +L  +K+MSE+L     +K  L  L+IFK   V  D  +      A N+++   VEE K +  +A+     D S+ L       N+F RA +L+   +         SA  IKP++    +K + G    T+DHWWS+F+ +    F EV+  +  G H+     +WREI          P  V  E+G S+K++ +H F  D+R DRI+P++G  F  TQE+   S     G IG    S          +  +++++ LQ  + L  + V E T + G + S++     V IADRFF+GGPL +RG++  S+GP    LT                    P+G+      G H+YSPLPF+  +++  +SLFRLH F  +        LL+ P        RA  + R     +  +L+ +    R   G G+I +  N  R+ELNYC+P+  Q  D   +GFQ GIG+ Y
Sbjct:   10 DDVPVYVTAVSFKGLRRTNADFLRRQLT--DLVKSKNMSELLKNSSELKSLLLGLQIFKFCEVSIDTEKYSSRSDAYNVNIF--VEEKKPQALKAQWTVNTDGSMRLGGSFALLNMFHRAERLEIEGNVGRDSSTMRSACFIKPVQNNASVKVSFGGSDGTYDHWWSKFLRNESTIFAEVASPSRFGLHKLHWSNVWREIEPSSSSCPTTPFNVRLESGPSLKTNFRHQFEFDSRSDRIFPDDGALFRLTQEISFISPAPPRGAIGLEAASPTPVGTAGDKSTQLRMDSLLQLPLRLTSWLVAEATFSAGFVHSLSSHA--VSIADRFFMGGPLDLRGYKYYSVGPSEPLLTPKPVYVDAPLRSGEAQGPTCPVGALGSWMGGLHLYSPLPFWGEARESVASLFRLHAFAMAG------SLLADPI-------RAFKVARNQGGQLDRFLQLLDFQPRYVLGAGLILRFVNVARLELNYCLPVNPQPDDAPQAGFQVGIGLSY 493
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BLAST of Sorting and assembly machinery component 50 homolog vs. TrEMBL
Match: A0A4S2LUZ1 (Bac_surface_Ag domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_004707 PE=4 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 6.453e-64
Identity = 148/514 (28.79%), Postives = 246/514 (47.86%), Query Frame = 3 
Query:   30 FFMSDLNEVPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAANLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKV-PIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQEL--FSDMTTEGNIGGSRLSN-----------INMKLEAELQKSISLKQFVL-ENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPL---------------------------TNDGYPIGSNFYLQHGFHVYSPLPFFSKD--GYSSLFRLHYFLTSAVTESS--EQLLSSPNSNMASGDRAVSMNRVNQDWV-QPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILYT 1430
            F M+  +++P  + K+ + G+  T    IKKQ     L  + ++ ++   +   K+RL+ L +F+ V    D     I D  +   VIF VEE +          G D    +   +   NL   A   D +     + +    AT+ KPLE  P ++F+ G     +DHWW+RF+      F +V+++T  G H+F+ +  WRE+ A++   P  V KE+G ++K  +KH F  DTR D ++P++G+ F  ++EL   S  +  G +   ++++             +K+E    K   L  +++ E T + GL  S++     V I DRFF+GGPL +RGF+ R++ P+                           T    P+GS+ +   G H Y+PLPFF  +    +S FRLH F  +  T  S  +++L    ++ ++ DR     R+  +   QP     R   G G++ + A   RIE+NYC+P ++Q  D + SGF FG GI Y+
Sbjct:    4 FEMAQTHQIPAFVDKIIVSGLNRTEESLIKKQFH--ALVQSTNVKDLFERVSEAKKRLDRLGVFRYVYALVD-----IADEPSKYRVIFKVEEKRPATGRISLTHGTDGVSKMCGSVRFNNLLRGAEFADLDLEVGSNQLTTKIATLSKPLERNPYVRFSFGGTEGHWDHWWARFLRHERSVFSDVTVETAYGVHKFQWDANWREVEARDNTTPWAVRKESGAALKVGLKHTFEHDTRSDMVFPDSGFLFRLSKELASISPGSPTGQMAPDKVTSSSAARPVDDRAFQLKVEGLTHKPFRLTNWLVGEVTCSAGLTHSLSGHP--VHIVDRFFLGGPLELRGFQWRTVSPMQPLLEPTQFNLPTADVVNETVDTTQTSTASRSPVGSDGFWLTGAHFYTPLPFFGAEEGSLASHFRLHAFCLAGSTLDSPVQRILDRIAASPSAPDRTSLTRRLLTELSSQP-----RAVVGGGLVIRFAGLLRIEINYCVPFKSQPGDLLKSGFNFGFGIAYS 503
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BLAST of Sorting and assembly machinery component 50 homolog vs. TrEMBL
Match: A0A0L8GXY3 (Bac_surface_Ag domain-containing protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22026227mg PE=4 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.551e-63
Identity = 145/467 (31.05%), Postives = 243/467 (52.03%), Query Frame = 3 
Query:   45 LNEVPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAA--NLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEK-VPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNIN-MKLEAELQKSISL-KQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            L+++P  + +V +DG+  T ++ + K+++  ++F AK+  E++     +K R E+L +F+++ +  D  +   ED  +  N +V F VEE +        + G  N   L L M  PN+FGR  K    Y +      G + T   PL G P   F+ G + S+ ++ WS +VE+S G   + +L +  G H  R+E +WR++ A  +     V ++ GH++KSSIKH F +DTRDD I P +G+      E          +GG    N+  +K E E Q + SL     ++ ++  G+++ +      + I DRFF+GGPLT+RGF L+ +GP  +DG  +G++ Y     H+Y+PLPF   K G+  LFR H F+ +          +  N  ++ G R + +N +  ++        R++ G GI+ ++    R+ELNY +PL     D V  G QFGIG ++
Sbjct:   26 LDQMPAKVRRVVVDGLGRTKNDIVVKEVK--SIFEAKNFQEMVHRTHDVKVRFEKLGLFRSIKIMVDNLK---EDSVSTDNYEVTFEVEELRRVSGGINTLIG-TNDASLLLGMKLPNMFGRGEKSIFEYSHGTKTNRGQNFTFYAPLHGNPDTMFSSGVYQSSMEYPWSGYVETSRGTSIDFTLPSYFGSHCLRLEGVWRDLRALSRTTAFAVREQAGHTLKSSIKHEFVKDTRDDPIIPRHGFLLKIIDEY-------AGLGG----NVEYLKNEIEFQGTKSLFFDCSVQMSLAGGMMKPLA-TNNELKINDRFFLGGPLTLRGFTLKGVGP-HSDGNALGADTYWLAALHLYTPLPFRPGKGGFGELFRTHLFVNAG---------NLANLKLSDGPRGI-LNGLKSNY--------RVSYGGGIVLRMGRVARLELNYVVPLHICQGDSVNPGLQFGIGFVF 455
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BLAST of Sorting and assembly machinery component 50 homolog vs. TrEMBL
Match: R7T871 (Bac_surface_Ag domain-containing protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_156414 PE=4 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.891e-62
Identity = 142/467 (30.41%), Postives = 232/467 (49.68%), Query Frame = 3 
Query:   42 DLNEVPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFD--KCEKIIEDGAANLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWR--EIMAKEKVPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            DL  VP  + K+ +DG+  T  + + +Q++   +  A +  +V+A+ +  K +++ L +F  + +  D  + EK   DG    +V F V+E +    E     G  N   +   +  PN+ GR   LDA Y        G SA   KPL+G P ++     + +  ++ WS + E + G   E+   T  G H    E +WR  E M+       V +++GHS+KS+++H F+RD+R+D + P NG  F  +QEL         +GG   + I  ++E +L +S+ L   V +  +  GL+R +    ++V I DRF +GGPLT+RGF ++ +G L  DG  +G + YL  G H+Y+PLPF   K G+   FR H F+      +                    +N    D ++  ++ +R + G GI+ K+    R+ELNYC P+  Q  D V  G QFGIG+ +
Sbjct:   27 DLKRVPAFVEKIHVDGLGRTKDDIVSQQLK--PILLATNFQQVVAKSQRAKVQMQRLGLFNDIDIHIDISRGEKARSDG---YEVTFRVKERRRVTGEVGTQVG-TNEGSIRFGVRLPNILGRGESLDAQYTYGTKSSMGSSALFSKPLKGNPDLRVLASVYQNNGEYPWSGYKELNRGTIAEIQFPTSIGHHSLLWEGVWRVLECMSNTSA-FAVREQSGHSLKSALRHTFSRDSRNDSVLPSNGNLFKASQEL-------AGLGGD-TNFIKHEMEVQLNQSLPLDT-VFQVCLAGGLMRPLL-PGSSVKINDRFMLGGPLTLRGFNIKGVG-LQEDGCAMGGDMYLCGGLHLYTPLPFRPGKGGFGDFFRTHLFVNGGNLSNLNN--------------GAPLN----DNLKNLVQTLRWSYGAGIVMKIGGFARMELNYCWPMGVQKGDSVNPGLQFGIGVSF 457
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Cavefish
Match: samm50 (SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:393111])

HSP 1 Score: 192.2 bits (487), Expect = 2.823e-55
Identity = 143/459 (31.15%), Postives = 219/459 (47.71%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVP-IEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+  V IDG+  T  + +  ++   ++F AK++ +V+ +    +++L  L IF+ V V  D  E   ED   N LDV F V+E +        M G +N   + L +  PN+FGRA KL   +         +  +  KP  G     F++  +  T    WS   E+  G   E+S       H  + E +WRE+    +     V +E+GHS+KSS+ H    DTR+  I P+ G      QEL       G  GG   S +    E +L + + L   VL  ++  G++ ++  + T+  IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G RA                   +T   GI+ +L N  R+ELNYCIP+  Q+ DR+  G QFG GI +
Sbjct:   45 VVVQHVHIDGLGRTKEDVLTYEIA--DVFRAKNLIDVMKKSHDARQKLLRLGIFRQVEVVIDTAEG--EDALPNGLDVTFEVKELRRMTGSYNTMVG-NNEGSMVLGLKLPNVFGRAEKLTFQFSYGTKETS-YGLSFFKPQPGHFERNFSINLYKVTGQFPWSSLRETDRGISTEISFPIWKTNHTLKWEGVWRELGCLARTASFAVREESGHSLKSSLSHAMVIDTRNSPILPKRGALLKINQEL------AGYTGGDA-SFLKEDFEIQLNRRL-LWDSVLSASLWGGMLLAIGDKPTS--IADRFYLGGPTSVRGFSMYSIGPQSEGDY-LGGEAYWAGGLHLYTPLPFRPGRGGFGDLFRTHFFLNAG---------NLCNLNYGEGPRA------------------HLT---GIVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRF 456
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Cavefish
Match: samm50l (sorting and assembly machinery component 50 homolog, like [Source:NCBI gene;Acc:492471])

HSP 1 Score: 183.726 bits (465), Expect = 4.425e-52
Identity = 142/460 (30.87%), Postives = 218/460 (47.39%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHW-WSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEK-VPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFFS-KDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+  V+I+G+  T  +++  ++   ++F+AK++ +V+ +    ++RL  L IFK V V  D  E   +D   N LDV F V E K        M G +N   + L +  PN+ GR  KL   +                   G+ R+  A  S +     + WS   E+  G   E++       H  + E +WRE+    +     V +E+GH++KS++ H    DTR+  I P  G      QEL       G  GG   S +    E +L +   L   VL  ++  G+I  +      + IADRF++GGP ++RGF + S+GP  N+G  +G + Y   G H+Y+PLPF S + G + LFR H+FL +          +  N +   G  A          +Q     IR + G GII +L N  R+ELNYCIP+  Q+ DR+  G QFG GI +
Sbjct:   45 VVVQHVNIEGLGRTKEDYLGYEIS--DVFNAKNLVDVMRKSHEARQRLLRLGIFKEVEVLIDISEG--DDALPNGLDVTFEVTELKRITGSYNTMVG-NNEGSMVLGIKFPNIIGRGEKLTFQFST-----------------GLKRLHMAYLSLNLMTGQFPWSSLKETDRGVSTELNFPLWMTDHTLKWEGVWRELSCLARSASFAVREESGHTLKSALSHTMVLDTRNSTILPRKGALLRINQEL------AGYTGGDA-SFLKEDFELQLNRPF-LWGSVLSASLWGGMIFPVGGRP--ISIADRFYLGGPTSVRGFGMYSIGP-QNEGDFLGGDAYWAGGLHLYTPLPFRSTRGGLADLFRTHFFLNAG---------NLCNLDYGEGPHA---------HLQKLAECIRWSYGAGIILRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRF 453
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Cavefish
Match: samm50 (SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:393111])

HSP 1 Score: 158.303 bits (399), Expect = 1.129e-42
Identity = 116/373 (31.10%), Postives = 183/373 (49.06%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVP-IEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSA 1169
            VV+  V IDG+  T  + +  ++   ++F AK++ +V+ +    +++L  L IF+ V V  D  E   ED   N LDV F V+E +        M G +N   + L +  PN+FGRA KL   +         +  +  KP  G     F++  +  T    WS   E+  G   E+S       H  + E +WRE+    +     V +E+GHS+KSS+ H    DTR+  I P+ G      QEL       G  GG   S +    E +L + + L   VL  ++  G++ ++  + T+  IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF   + G+  LFR H+FL + 
Sbjct:   45 VVVQHVHIDGLGRTKEDVLTYEIA--DVFRAKNLIDVMKKSHDARQKLLRLGIFRQVEVVIDTAEG--EDALPNGLDVTFEVKELRRMTGSYNTMVG-NNEGSMVLGLKLPNVFGRAEKLTFQFSYGTKETS-YGLSFFKPQPGHFERNFSINLYKVTGQFPWSSLRETDRGISTEISFPIWKTNHTLKWEGVWRELGCLARTASFAVREESGHSLKSSLSHAMVIDTRNSPILPKRGALLKINQEL------AGYTGGD-ASFLKEDFEIQLNRRL-LWDSVLSASLWGGMLLAIGDKPTS--IADRFYLGGPTSVRGFSMYSIGPQSEGDY-LGGEAYWAGGLHLYTPLPFRPGRGGFGDLFRTHFFLNAG 400
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Sea Lamprey
Match: SAMM50 (SAMM50 sorting and assembly machinery component [Source:HGNC Symbol;Acc:HGNC:24276])

HSP 1 Score: 141.739 bits (356), Expect = 7.807e-38
Identity = 112/379 (29.55%), Postives = 177/379 (46.70%), Query Frame = 3 
Query:   45 LNEVPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFD--KCEKIIEDGAANLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVP-IEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSA 1169
            L+   V++  VSI G++ T  ++I  ++   ++F+A S+ EV+ +    +E++  L IF+ V V  D  K      DG   LD+ F V E +        M G +N   + L +  PNLFGRA KL   +         +  +  KP  G      +   +  T    WS   ++  G   +++      +H  R E  WRE+    +     V +E+GHS+KSS+ H    DTR+  I P  G      QEL       G  GG  +  +    E +L K + L   VL  ++  G++  +    ++  IADR+F+GG  T+RGF + S+GP +   Y +G   Y   G H+Y+PLPF     G+  LF  H+FL + 
Sbjct:   34 LDNKQVLVQNVSIQGLERTKDDYIMHEIS--DVFNATSLVEVMQKSHEAREKMLRLGIFRHVEVLIDTAKGPGAQPDG---LDINFEVVEMRRLTGSYNTMVG-NNEGSMVLGLRLPNLFGRAEKLTFQFSYGTKETS-YGLSFFKPQTGCFERNLSASVYKITGQFPWSSLRQTDRGVSLDLNFPLWKTRHCVRWEGAWRELGCLARTASFAVRQESGHSLKSSVSHTMVFDTRNASILPTQGLLLKVNQEL------AGYTGGD-VKFLKEDFELQLNKKL-LWDSVLSASLWGGMLMPIGDRPSS--IADRYFLGGATTVRGFSMYSIGPQSEGDY-LGGEAYWAAGLHLYTPLPFRPGHGGFGDLFHAHFFLNAG 394
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Yeast
Match: SAM50 (Component of the Sorting and Assembly Machinery (SAM) complex; the SAM (or TOB) complex is located in the mitochondrial outer membrane; the complex binds precursors of beta-barrel proteins and facilitates their outer membrane insertion; homologous to bacterial Omp85 [Source:SGD;Acc:S000004971])

HSP 1 Score: 83.1889 bits (204), Expect = 1.387e-17
Identity = 72/282 (25.53%), Postives = 128/282 (45.39%), Query Frame = 3 
Query:  612 HQFRMETMWREIMAKEK---VPIEVS----KENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFV-LENTINWGLIRSMTHEET-NVPIADRFFIGGPLTMRGFELRSMGPLTNDGY-PIGSNFYLQHGFHVYSPLPFFSKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            H++ +ET WR      +    P   S     + G  +++ + H F  D RD  + P  G     + EL            S   ++  +LE    KS     F+    TI  G +++++ +++  V I D+F  GGP  +RGF+   +GP   D Y  +G + ++ +G  V+S LP+  K    S FRLH+F          +L++  N+++ +    +S                  +TG+G++ +   A R ELN+ +P+    +D +  GFQFG+G+ +
Sbjct:  238 HEWFLETCWRSTKICSQGTSAPYMYSGTMLSQAGDQLRTILGHTFVLDKRDHIMCPTKGSMLKWSNEL------------SPGKHLKTQLELNSVKSWMNDDFITFSTTIKTGYLKNLSSQQSLPVHICDKFQSGGPSDIRGFQTFGLGP--RDLYDAVGGDAFVSYGLSVFSRLPW--KKVEKSNFRLHWFFNGG------KLVNHDNTSLGNCIGQLSKEH-------------STSTGIGLVLRHPMA-RFELNFTLPITAHENDLIRKGFQFGLGLAF 483
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Nematostella
Match: EDO36892 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SHC7])

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-15
Identity = 44/140 (31.43%), Postives = 74/140 (52.86%), Query Frame = 3 
Query:  969 ADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFFSKDG-YSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSD 1385
            A RFF+GGPL++RGF+++S+GP  ++G  +G + Y   G H+Y+PLPF   +G +    + H F+ +         L+  N  +   +R           + P    +R + G G++F L  A R+E+NYC+P    + D
Sbjct:    7 AFRFFLGGPLSVRGFQMKSLGP-RSEGDSLGGDAYWAAGLHLYTPLPFRPGEGSFGDHIKTHGFINAGN-------LTQLNCTLPWRER-----------LDPLRSGVRWSYGFGLVFILGVA-RVEVNYCLPKGVHSDD 126
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Nematostella
Match: EDO28303 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SHC7])

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-15
Identity = 44/140 (31.43%), Postives = 74/140 (52.86%), Query Frame = 3 
Query:  969 ADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFFSKDG-YSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSD 1385
            A RFF+GGPL++RGF+++S+GP  ++G  +G + Y   G H+Y+PLPF   +G +    + H F+ +         L+  N  +   +R           + P    +R + G G++F L  A R+E+NYC+P    + D
Sbjct:    7 AFRFFLGGPLSVRGFQMKSLGP-RSEGDSLGGDAYWAAGLHLYTPLPFRPGEGSFGDHIKTHGFINAGN-------LTQLNCTLPWRER-----------LDPLRSGVRWSYGFGLVFILGVA-RVEVNYCLPKGVHSDD 126
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Medaka
Match: samm50l (sorting and assembly machinery component 50 homolog A [Source:NCBI gene;Acc:101164364])

HSP 1 Score: 191.815 bits (486), Expect = 2.945e-54
Identity = 140/459 (30.50%), Postives = 215/459 (46.84%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAAN-LDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEK-VPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+  V+I G+  T  + +  ++   ++F+AK++ +V+ +    ++RL  L IFK V V  D  E    D   N LDV F V E K        M G +N   + L +  PN+ GRA KL   +         +  +  KP  G       L  +  T    WS   E+  G   E +   G   H  + E +WRE+    +     V +E+GHS+KS++ H  + D+R+  I+P +G      QEL           G   S      E +L + +     VL  ++  G++  +  + +   IADRF++GGP ++RGF + S+GP +   Y +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G RA          +Q     IR + G GI+ +L N  R+ELNYCIP+  Q+ DR+  G QFG GI +
Sbjct:  134 VVVQHVNIQGLGRTKEDLLGYEIS--DVFNAKNLIDVMKKAHIARQRLLRLGIFKEVEVLIDTSEG--ADALPNGLDVTFEVNEIKRLTGSYNTMVG-NNEGSMVLGLKLPNMIGRAEKLTFQFSYGTKETS-YGLSFFKPQPGYFERNLTLNMYKVTGQFPWSSLKETDRGVSAEFNFPVGPTGHMLKWEGVWRELGCLARSASFAVREESGHSLKSALSHTMSIDSRNSAIFPSSGALLRINQEL-------AGFTGGDASFFKEDFELQLNRRLFWDS-VLSASLWGGMLFPIEGKPSC--IADRFYLGGPTSVRGFGMYSIGPQSEGDY-LGGEAYWAGGLHLYTPLPFRPGRGGFGDLFRTHFFLNAG---------NLCNLNYGEGPRA---------HLQKLAECIRWSYGAGIVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRF 557
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Medaka
Match: samm50 (SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:101156081])

HSP 1 Score: 186.808 bits (473), Expect = 3.942e-53
Identity = 141/460 (30.65%), Postives = 217/460 (47.17%), Query Frame = 3 
Query:   60 VVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFD--KCEKIIEDGAANLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREI-MAKEKVPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFF-SKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILY 1427
            VV+ +V IDG+  T  + +  ++    +F AK++ +V+      ++RL  L IF+ V V  D  + E  + +G   LDV F V E +        M G +N   + L +  PN  GRA K+   +         +  +  KP  G     F++ ++  T    WS   E+  G   E+S          + E +WRE+          V +E+GHS+KSS+ H    DTR+  I P+ G      QEL           G     +    E +L K +     VL  ++  GL+  +  E+T+  IADRF++GGP ++RGF + SMGP  +DG  +G   Y   G H+Y+PLPF   + G+  LFR H+FL +          +  N N   G +A          ++     +R + GLGI+ +L N  R+ELNYCIP+  Q+ DR+  G QFG GI +
Sbjct:   45 VVVQQVHIDGLGRTKEDLLTYEIAE--VFRAKNLIDVMRRSHEARQRLLRLGIFRKVEVIIDTARGEHALPNG---LDVTFEVTELRRLTGSYNTMVG-NNEGSMVLGLKLPNALGRAEKMTFQFSYGTKETS-YGLSFFKPQPGHFERNFSINAYKVTGQFPWSSLRETDRGISTEISFPVWKTNQTLKWEGVWRELGCLANTASFAVREESGHSLKSSLSHAMVIDTRNSSILPKKGGLLKIHQEL-------AGFTGGDACFLKEDFEIQLNKKLFWDS-VLSASLWGGLLLPLGVEKTS--IADRFYLGGPTSIRGFSMYSMGP-QSDGDYLGGEAYWAGGLHLYTPLPFRPGRGGFGDLFRTHFFLNAG---------NLCNLNYGEGPQA---------HLKKLAECLRWSYGLGIVLRLGNIARLELNYCIPMGVQSGDRICDGVQFGAGIRF 468
[Close]
BLAST of Sorting and assembly machinery component 50 homolog vs. Planmine SMEST
Match: SMESG000079491.1 (SMESG000079491.1)

HSP 1 Score: 967.607 bits (2500), Expect = 0.000e+0
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 3 
Query:   36 MSDLNEVPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAANLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFFSKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILYT 1430
            MSDLNEVPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAANLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFFSKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILYT
Sbjct:    1 MSDLNEVPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIKSIKERLEELEIFKTVTVKFDKCEKIIEDGAANLDVIFNVEESKARRFEAKAMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLEGIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETMWREIMAKEKVPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCTQELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIRSMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHGFHVYSPLPFFSKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRAVSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSDRVVSGFQFGIGILYT 465
The following BLAST results are available for this feature:
BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
SAMM507.612e-5630.94SAMM50 sorting and assembly machinery component [S... [more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
gop-31.260e-2222.10SAM50-like protein gop-3 [Source:UniProtKB/Swiss-... [more]
gop-31.260e-2222.10SAM50-like protein gop-3 [Source:UniProtKB/Swiss-... [more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG76392.187e-4025.94gene:FBgn0033989 transcript:FBtr0087424[more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
samm50l1.375e-5731.24sorting and assembly machinery component 50 homolo... [more]
samm50l1.530e-5731.24sorting and assembly machinery component 50 homolo... [more]
samm507.295e-5731.15SAMM50 sorting and assembly machinery component [S... [more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
samm504.863e-1636.80SAMM50 sorting and assembly machinery component [S... [more]
samm505.323e-1636.80SAMM50 sorting and assembly machinery component [S... [more]
samm501.245e-1536.80SAMM50 sorting and assembly machinery component [S... [more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Samm505.360e-5831.59SAMM50 sorting and assembly machinery component [S... [more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q6P806|SAM50_XENTR2.342e-5730.94Sorting and assembly machinery component 50 homolo... [more]
sp|Q5U3I0|SAM5B_DANRE3.672e-5731.45Sorting and assembly machinery component 50 homolo... [more]
sp|Q8BGH2|SAM50_MOUSE3.750e-5731.59Sorting and assembly machinery component 50 homolo... [more]
sp|Q6AXV4|SAM50_RAT7.940e-5731.81Sorting and assembly machinery component 50 homolo... [more]
sp|Q803G5|SAM5A_DANRE8.437e-5631.15Sorting and assembly machinery component 50 homolo... [more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0X3P6672.988e-6433.07Bac_surface_Ag domain-containing protein (Fragment... [more]
A0A5K3FBF75.556e-6431.21Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A4S2LUZ16.453e-6428.79Bac_surface_Ag domain-containing protein OS=Opisth... [more]
A0A0L8GXY33.551e-6331.05Bac_surface_Ag domain-containing protein OS=Octopu... [more]
R7T8711.891e-6230.41Bac_surface_Ag domain-containing protein OS=Capite... [more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
samm502.823e-5531.15SAMM50 sorting and assembly machinery component [S... [more]
samm50l4.425e-5230.87sorting and assembly machinery component 50 homolo... [more]
samm501.129e-4231.10SAMM50 sorting and assembly machinery component [S... [more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
SAMM507.807e-3829.55SAMM50 sorting and assembly machinery component [S... [more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
SAM501.387e-1725.53Component of the Sorting and Assembly Machinery (S... [more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO368924.993e-1531.43Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO283034.993e-1531.43Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
samm50l2.945e-5430.50sorting and assembly machinery component 50 homolo... [more]
samm503.942e-5330.65SAMM50 sorting and assembly machinery component [S... [more]
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BLAST of Sorting and assembly machinery component 50 homolog vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000079491.10.000e+0100.00SMESG000079491.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021129 ID=SMED30021129|Name=Sorting and assembly machinery component 50 homolog|organism=Schmidtea mediterranea sexual|type=transcript|length=1495bp
TTTCTTTTGAATTTTGCAAAAATTAATTATTTTTTATGTCTGATTTAAAT
GAGGTTCCTGTTGTCATTGGTAAAGTTTCTATTGATGGAATAAAAGCCAC
AAATCATGAATTTATTAAAAAGCAGATGCAACATGAAAACCTATTTTCTG
CTAAATCAATGTCTGAAGTCTTAGCGGAAATCAAATCAATCAAAGAGCGA
CTAGAAGAACTTGAAATATTTAAAACTGTTACTGTAAAATTTGATAAATG
TGAAAAGATTATTGAAGACGGTGCCGCAAATTTAGATGTTATTTTTAATG
TTGAAGAATCAAAAGCAAGACGTTTTGAAGCTAAAGCAATGTGTGGGTTG
GATAATTCTGTAGGTTTAAATTTAGAGATGATTAGTCCGAATTTATTCGG
ACGTGCCACGAAATTAGATGCAAATTATCACAATAATGTTCATGGAATTG
GTGGATGGTCGGCAACTGTTATAAAGCCACTTGAAGGAATTCCGAGAATT
AAATTCGCCTTGGGTTCATGGAGTAGCACGTTTGATCATTGGTGGAGTCG
ATTTGTTGAATCCAGTATGGGAGGATTTGGCGAAGTTTCCCTGAAAACAG
GATGCGGTCAACATCAATTTCGAATGGAAACAATGTGGCGTGAGATCATG
GCAAAAGAAAAAGTACCAATTGAAGTGTCAAAAGAGAATGGGCACAGTAT
GAAATCCTCGATAAAGCACATATTTACTAGAGACACGCGGGATGACCGTA
TCTATCCAGAAAATGGTTATCGCTTTTCTTGCACTCAAGAACTGTTCAGT
GATATGACCACCGAAGGTAACATTGGTGGTTCTCGCTTATCGAATATCAA
TATGAAATTGGAAGCTGAATTGCAAAAATCAATATCTCTGAAACAATTCG
TATTGGAAAACACTATCAATTGGGGCTTGATAAGGTCAATGACTCATGAA
GAAACAAATGTACCTATTGCTGATCGATTTTTCATTGGTGGGCCTTTAAC
CATGCGTGGATTTGAATTGAGAAGCATGGGGCCGCTGACCAATGATGGCT
ACCCTATCGGATCTAATTTCTATTTGCAGCACGGTTTCCACGTGTACAGC
CCGTTGCCGTTTTTCAGTAAAGATGGCTATTCTAGCCTTTTCCGGCTTCA
TTATTTCCTGACATCAGCAGTGACGGAATCCAGCGAGCAACTGCTGTCGT
CACCTAACAGCAACATGGCATCCGGCGACAGAGCGGTATCGATGAACCGG
GTCAACCAGGATTGGGTGCAGCCGTATTTGCGCCCGATCAGAATGACCAC
CGGACTCGGGATCATATTCAAGCTGGCCAACGCATTCAGAATCGAGCTGA
ATTACTGCATACCTTTGCGCAATCAGAATTCCGATAGGGTTGTCAGTGGA
TTTCAGTTCGGTATAGGAATTCTCTACACGTAACGGGGGGCAATTTATTT
TTGGCATTTAGGTTTAGAAAATATAACCAATAAAGGCAAAAAAAA
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protein sequence of SMED30021129-orf-1

>SMED30021129-orf-1 ID=SMED30021129-orf-1|Name=SMED30021129-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=466bp
MSDLNEVPVVIGKVSIDGIKATNHEFIKKQMQHENLFSAKSMSEVLAEIK
SIKERLEELEIFKTVTVKFDKCEKIIEDGAANLDVIFNVEESKARRFEAK
AMCGLDNSVGLNLEMISPNLFGRATKLDANYHNNVHGIGGWSATVIKPLE
GIPRIKFALGSWSSTFDHWWSRFVESSMGGFGEVSLKTGCGQHQFRMETM
WREIMAKEKVPIEVSKENGHSMKSSIKHIFTRDTRDDRIYPENGYRFSCT
QELFSDMTTEGNIGGSRLSNINMKLEAELQKSISLKQFVLENTINWGLIR
SMTHEETNVPIADRFFIGGPLTMRGFELRSMGPLTNDGYPIGSNFYLQHG
FHVYSPLPFFSKDGYSSLFRLHYFLTSAVTESSEQLLSSPNSNMASGDRA
VSMNRVNQDWVQPYLRPIRMTTGLGIIFKLANAFRIELNYCIPLRNQNSD
RVVSGFQFGIGILYT*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0002109X1 cell
PLANA:0002111X2 cell
PLANA:0003001lateral region of the whole animal
Vocabulary: INTERPRO
TermDefinition
IPR010827BamA/TamA_POTRA
IPR039910D15-like
IPR000184Bac_surfAg_D15
Vocabulary: cellular component
TermDefinition
GO:0019867outer membrane
GO:0005737cytoplasm
GO:0005739mitochondrion
GO:0005741mitochondrial outer membrane
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: biological process
TermDefinition
GO:0033108mitochondrial respiratory chain complex assembly
GO:0042407cristae formation
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..62
NoneNo IPR availableGENE3DG3DSA:2.40.160.50coord: 174..464
e-value: 6.2E-27
score: 96.5
NoneNo IPR availablePANTHERPTHR12815:SF18SORTING AND ASSEMBLY MACHINERY COMPONENT 50 HOMOLOGcoord: 12..462
IPR010827POTRA domain, BamA/TamA-likePFAMPF07244POTRAcoord: 9..91
e-value: 2.7E-4
score: 21.4
IPR000184Bacterial surface antigen (D15)PFAMPF01103Bac_surface_Agcoord: 214..461
e-value: 4.7E-34
score: 118.3
IPR039910Surface antigen D15-likePANTHERPTHR12815SORTING AND ASSEMBLY MACHINERY SAM50 PROTEINcoord: 12..462