Ig-like domain-containing protein

Overview
NameIg-like domain-containing protein
Smed IDSMED30021103
Length (bp)3625
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Ig-like domain-containing protein (SMED30021103) t-SNE clustered cells

Violin plots show distribution of expression levels for Ig-like domain-containing protein (SMED30021103) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ig-like domain-containing protein (SMED30021103) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ig-like domain-containing protein (SMED30021103) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30021103

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30021103h1SMcG0015700 dd_Smed_v4_6524_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30021103h1SMcG0015700 dd_Smed_v4_6524_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30021103h1SMcG0015700 dd_Smed_v4_6524_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30021103h1SMcG0015700 dd_Smed_v4_6524_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30021103h1SMcG0015700 dd_Smed_v6_6524_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
muscle cellSMED30021103h1SMcG0015700 dd_Smed_v4_6524_0_1dd_Smed_v4PMID:30962434
Cote et al., 2019		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Zebrafish
Match: hspg2 (heparan sulfate proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-080807-4])

HSP 1 Score: 52.7582 bits (125), Expect = 3.545e-6
Identity = 37/133 (27.82%), Postives = 61/133 (45.86%), Query Frame = 2 
Query: 1364 RINVVCNPATHFQCKRFAGKMCIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKERGDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVF-----KQSVFVFNISSIDTGIYRCSASSNKAFI 1747
            R    C P   F C   + + CIP S +CD    C D SDE  C   +  ++++S  +++   RGDT+T TCS+ +    P+I  R N       N +       + ++ + ++   D G Y C A + K  +
Sbjct:  342 RPGAACAPE-QFVC--LSDRKCIPASYQCDEEPDCADRSDEFGC---APPTVTVSPEESITASRGDTVTFTCSA-IGVPVPIITWRLNWGHIPANNRITMISENGQGTLTIRDVKEGDQGAYTCEAINAKGLV 467
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Zebrafish
Match: hspg2 (heparan sulfate proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-080807-4])

HSP 1 Score: 52.7582 bits (125), Expect = 3.787e-6
Identity = 37/133 (27.82%), Postives = 61/133 (45.86%), Query Frame = 2 
Query: 1364 RINVVCNPATHFQCKRFAGKMCIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKERGDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVF-----KQSVFVFNISSIDTGIYRCSASSNKAFI 1747
            R    C P   F C   + + CIP S +CD    C D SDE  C   +  ++++S  +++   RGDT+T TCS+ +    P+I  R N       N +       + ++ + ++   D G Y C A + K  +
Sbjct:  277 RPGAACAPE-QFVC--LSDRKCIPASYQCDEEPDCADRSDEFGC---APPTVTVSPEESITASRGDTVTFTCSA-IGVPVPIITWRLNWGHIPANNRITMISENGQGTLTIRDVKEGDQGAYTCEAINAKGLV 402
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Zebrafish
Match: hspg2 (heparan sulfate proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-080807-4])

HSP 1 Score: 52.7582 bits (125), Expect = 4.192e-6
Identity = 37/133 (27.82%), Postives = 61/133 (45.86%), Query Frame = 2 
Query: 1364 RINVVCNPATHFQCKRFAGKMCIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKERGDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVF-----KQSVFVFNISSIDTGIYRCSASSNKAFI 1747
            R    C P   F C   + + CIP S +CD    C D SDE  C   +  ++++S  +++   RGDT+T TCS+ +    P+I  R N       N +       + ++ + ++   D G Y C A + K  +
Sbjct:  277 RPGAACAPE-QFVC--LSDRKCIPASYQCDEEPDCADRSDEFGC---APPTVTVSPEESITASRGDTVTFTCSA-IGVPVPIITWRLNWGHIPANNRITMISENGQGTLTIRDVKEGDQGAYTCEAINAKGLV 402
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Xenopus
Match: LRP6 (LDL receptor related protein 6 [Source:NCBI gene;Acc:100489328])

HSP 1 Score: 53.1434 bits (126), Expect = 4.216e-6
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 2 
Query: 1379 CNPATHFQCKRFAGKM-CIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQ 1537
            C+P   F C  F G++ CIP   +CD  T+CED SDE+ C  CSD     +SGQ
Sbjct: 1212 CSP-LQFTC--FTGEVDCIPAEWRCDGFTECEDHSDEQNCPMCSDTQYQCASGQ 1262
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Mouse
Match: Hspg2 (perlecan (heparan sulfate proteoglycan 2) [Source:MGI Symbol;Acc:MGI:96257])

HSP 1 Score: 53.1434 bits (126), Expect = 3.062e-6
Identity = 38/129 (29.46%), Postives = 59/129 (45.74%), Query Frame = 2 
Query: 1376 VCNPATHFQCKRFAGKMCIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKERGDTLTMTCSSTMEACYPLIWLRFN-KPLEMHRNLVVFKQ----SVFVFNISSIDTGIYRCSASSNKAFI 1747
            VC P THFQC   +   CIP S  CD  + C D SDE     C    +     Q++   RG T+T TC +T     P+I  R N   +  H  + +  +    ++ + ++   D G Y C A +++  +
Sbjct:  367 VCGP-THFQC--VSTNRCIPASFHCDEESDCPDRSDEFG---CMPPQVVTPPQQSIQASRGQTVTFTCVAT-GVPTPIINWRLNWGHIPAHPRVTMTSEGGRGTLIIRDVKEADQGAYTCEAMNSRGMV 488
[Close]
BLAST of Ig-like domain-containing protein vs. Ensembl Mouse
Match: Hspg2 (perlecan (heparan sulfate proteoglycan 2) [Source:MGI Symbol;Acc:MGI:96257])

HSP 1 Score: 53.1434 bits (126), Expect = 3.063e-6
Identity = 38/129 (29.46%), Postives = 59/129 (45.74%), Query Frame = 2 
Query: 1376 VCNPATHFQCKRFAGKMCIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKERGDTLTMTCSSTMEACYPLIWLRFN-KPLEMHRNLVVFKQ----SVFVFNISSIDTGIYRCSASSNKAFI 1747
            VC P THFQC   +   CIP S  CD  + C D SDE     C    +     Q++   RG T+T TC +T     P+I  R N   +  H  + +  +    ++ + ++   D G Y C A +++  +
Sbjct:  367 VCGP-THFQC--VSTNRCIPASFHCDEESDCPDRSDEFG---CMPPQVVTPPQQSIQASRGQTVTFTCVAT-GVPTPIINWRLNWGHIPAHPRVTMTSEGGRGTLIIRDVKEADQGAYTCEAMNSRGMV 488
[Close]
BLAST of Ig-like domain-containing protein vs. UniProt/SwissProt
Match: sp|A8X765|EGG1_CAEBR (LDL receptor repeat-containing protein egg-1 OS=Caenorhabditis briggsae OX=6238 GN=egg-1 PE=3 SV=2)

HSP 1 Score: 54.299 bits (129), Expect = 6.386e-6
Identity = 62/274 (22.63%), Postives = 101/274 (36.86%), Query Frame = 2 
Query: 2084 TCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSRESTQVTCYYHKDCYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEPRWSKTNFKSIEEITGAKQTYIQPNI---------AQLTIKSATYDARGYYNCSVRSPDSNRELARKLMFIHVHDLTCPEDNIKCDKNTKCIPKHKLCDNVMDCRDNSDEKNCTKC 2878
            TCS  +  C     C+P S  CDG K C DGSDE  CNKC+ G      + + ++SR    +  +    C  V     +  +        S     L  +   ++ S+V +   G K        ++E N      PG   ++           + G+          +EE  G   +   P +         AQ      +    G ++C   + + N    ++    +    TC         + KC+   + CD V DC D SDE+NC++C
Sbjct:  298 TCSKDQFKCNGSNACLPLSAKCDGVKDCSDGSDENNCNKCQKG------AHVSLVSRNIKHL--FASHVCDGVAQCADRSDEQQCDCKTCSGSDKALCDDGTCIKRSQVCD---GKKDCSDG---MDEENC-----PGTCSIEAFATKVKRVTCSDGKDYTESEACSGVEESCGGSCSKCHPKLTFTCPAAGNAQKKCIKRSKVCDGIFDCDDGADEKNCTPVKECGIDNASQFTC---------DRKCVDASRRCDGVWDCEDKSDEQNCSQC 543
[Close]
BLAST of Ig-like domain-containing protein vs. TrEMBL
Match: A0A4D6FZI7 (Ig-like domain-containing protein (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0
Identity = 289/293 (98.63%), Postives = 292/293 (99.66%), Query Frame = 2 
Query: 1739 AFIDVSVNVIEPPTLKINYPSSVINITAGHDIDIICSITENKASEKQTLRPIWKFDQSKLILNNIKLNYFPNRTSILSIVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSRESTQVTCYYHKDCYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEPRWSKTNFKSIEEITGAKQT 2617
            AFIDVSVNVIEP TLKINYPSSVINITAGHDIDIICSITENKA+EKQTLRPIWKFDQSK+ILNNIKLNYFPNRTSILS+VKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSRESTQVTCYYHKDCYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEPRWSKTNFKSIEEITGAKQT
Sbjct:    1 AFIDVSVNVIEPXTLKINYPSSVINITAGHDIDIICSITENKAAEKQTLRPIWKFDQSKMILNNIKLNYFPNRTSILSMVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSRESTQVTCYYHKDCYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEPRWSKTNFKSIEEITGAKQT 293

HSP 2 Score: 74.7146 bits (182), Expect = 1.499e-10
Identity = 66/278 (23.74%), Postives = 118/278 (42.45%), Query Frame = 2 
Query: 2444 INITVIEEVNITFIGNPGFVFVDHGGDIEVNC--------HSNYGEPRWSKTNFKSIEEITGAKQTYIQPNIAQLTIKSATYDARGYYNCSVRSPDSNRELARKLMFIHVHDLTCPEDNIKCDKNTKCIPKHKLCDNVMDCRDNSDEKNCTKC-NFELEIKPKFILLSTAGWGNLQCIVPHKDCLPIQW-ITRNGDNLSPKNYIKYNHSLFMFNLEPQENQEII-CTNGQKSTSAFLTV-KYLDITIVPYQPDGSTLYINKGDTQIIECRSTLGTPQW 3241
            +++ VIE   +        + +  G DI++ C              P W     K I  +   K  Y     + L++  AT D    Y C V       + +   + ++V  LTC      C    KCIP    CD    C D SDE+ C KC N  + ++P  +++ +     + C   HKDC P++W + ++  +++  N +    +  M N    E  ++  C +G KS+   +TV + ++IT +    +   ++++ G    + C S  G P+W
Sbjct:    5 VSVNVIEPXTLKINYPSSVINITAGHDIDIICSITENKAAEKQTLRPIWKFDQSKMI--LNNIKLNYFPNRTSILSMVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSRESTQVTCYY-HKDCYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINITVIEEVNITFI---GNPGFVFVDHGGDIEVNCHSNYGEPRW 276

HSP 3 Score: 62.003 bits (149), Expect = 2.834e-6
Identity = 55/198 (27.78%), Postives = 89/198 (44.95%), Query Frame = 2 
Query: 1277 IIRSLSETTDVK----CQVRWGFEERGNIMTSVRINVVCNPAT-HFQCKRFAGKM-CIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKERGDTLTMTCSSTMEACYPLIW--LRFNKPLEMHRNLVVFKQSVFVFNISSIDTGIYRCSASSNKAFIDVSVNVIEPPTLKINYPSSVINITAGHDIDIIC 1846
            I+  +  T DV+    C+V WG         +VR+NV+  P T  ++ K  A KM CIP S  CD   QC D SDEE CN C +  + +     V   R  T  +TC    + CYP+ W   +  + +     + V    + + N+    + +Y C +    + I+++  VIE   +        + +  G DI++ C
Sbjct:   76 ILSMVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVI--PLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSREST-QVTCYYHKD-CYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINIT--VIEEVNITFIGNPGFVFVDHGGDIEVNC 267
[Close]
BLAST of Ig-like domain-containing protein vs. TrEMBL
Match: A0A1B6CLV9 (Uncharacterized protein (Fragment) OS=Clastoptera arizonana OX=38151 GN=g.42728 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.261e-9
Identity = 103/420 (24.52%), Postives = 161/420 (38.33%), Query Frame = 2 
Query: 1556 GDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVFKQSVFVF-NISSIDTGIYRCSASSNKAFI-----DVSVN----VIEPPTLKINYPSSVINITAGHDIDIICSITENKASEKQTLRPIWKFDQ-SKLILNNIKLNYFPNRTSILSIVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVI--------VQPSTLVILSRESTQVTCYYHKDC-YPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQI---NITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEP---RWSKTNFKSIEEITGAKQTYIQPNIAQLTIKSATYDARGYYNCSVRSPDSNRELARKLM 2737
            GD   + C++T E    + WL   + L    N VV +    +F NI   D G Y C A   +  I     DV VN    V       ++Y  S + +    D D    I   + SE     P   F Q S LIL+N+KL                 +    Y C+     G    +S  + + V P  C  +E  C +  +CI   + CDGQ  C D SDE +C   R G  +        ++PS  ++   +S  V C+  +     V W   +   + N        G+ L ++N   E S V+ C +  ++  +   +  +  E NI          V++G  I + C ++   P    W+K              ++   N   L I S TY+  G Y CS  + +   E+ R L+
Sbjct: 2658 GDNAQILCTATGEEPIEITWLAIGRDLP---NSVVTRGGQILFRNIKLSDAGRYMCRARDARGQIAESNSDVIVNEHNYVKAVDRHPVSYEGSSVRLQC--DTDTHTQIIWTRDSEP---LPRNSFIQGSVLILDNLKL-----------------EDGGRYICQTDTSTG---TASDYIELRVEPSGCGMKEFRCGNG-ECIELDLVCDGQPHCQDRSDETICGA-RQGRGLDSEPMELGIEPSKDIVNFGDSVDVRCFDKRSSNTKVYWSKVQSSMAFNE----RTSGDMLRIDNANTENSGVFRCTAQSQNGHVVEKDYVLNVEGNIPINNEVQQFSVNYGDIIPLECQTDLEPPVTYTWTKQG--------SVLPSHSTANGILLNISSVTYEDAGLYICSANNSNVRMEIPRLLL 3035
[Close]
BLAST of Ig-like domain-containing protein vs. TrEMBL
Match: A0A1B6EDX6 (Uncharacterized protein OS=Clastoptera arizonana OX=38151 GN=g.42720 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-9
Identity = 103/420 (24.52%), Postives = 161/420 (38.33%), Query Frame = 2 
Query: 1556 GDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVFKQSVFVF-NISSIDTGIYRCSASSNKAFI-----DVSVN----VIEPPTLKINYPSSVINITAGHDIDIICSITENKASEKQTLRPIWKFDQ-SKLILNNIKLNYFPNRTSILSIVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVI--------VQPSTLVILSRESTQVTCYYHKDC-YPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQI---NITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEP---RWSKTNFKSIEEITGAKQTYIQPNIAQLTIKSATYDARGYYNCSVRSPDSNRELARKLM 2737
            GD   + C++T E    + WL   + L    N VV +    +F NI   D G Y C A   +  I     DV VN    V       ++Y  S + +    D D    I   + SE     P   F Q S LIL+N+KL                 +    Y C+     G    +S  + + V P  C  +E  C +  +CI   + CDGQ  C D SDE +C   R G  +        ++PS  ++   +S  V C+  +     V W   +   + N        G+ L ++N   E S V+ C +  ++  +   +  +  E NI          V++G  I + C ++   P    W+K              ++   N   L I S TY+  G Y CS  + +   E+ R L+
Sbjct: 2714 GDNAQILCTATGEEPIEITWLAIGRDLP---NSVVTRGGQILFRNIKLSDAGRYMCRARDARGQIAESNSDVIVNEHNYVKAVDRHPVSYEGSSVRLQC--DTDTHTQIIWTRDSEP---LPRNSFIQGSVLILDNLKL-----------------EDGGRYICQTDTSTG---TASDYIELRVEPSGCGMKEFRCGNG-ECIELDLVCDGQPHCQDRSDETICGA-RQGRGLDSEPMELGIEPSKDIVNFGDSVDVRCFDKRSSNTKVYWSKVQSSMAFNE----RTSGDMLRIDNANTENSGVFRCTAQSQNGHVVEKDYVLNVEGNIPINNEVQQFSVNYGDIIPLECQTDLEPPVTYTWTKQG--------SVLPSHSTANGILLNISSVTYEDAGLYICSANNSNVRMEIPRLLL 3091
[Close]
BLAST of Ig-like domain-containing protein vs. TrEMBL
Match: A0A1B6DS91 (Uncharacterized protein (Fragment) OS=Clastoptera arizonana OX=38151 GN=g.42739 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.687e-9
Identity = 103/420 (24.52%), Postives = 161/420 (38.33%), Query Frame = 2 
Query: 1556 GDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVFKQSVFVF-NISSIDTGIYRCSASSNKAFI-----DVSVN----VIEPPTLKINYPSSVINITAGHDIDIICSITENKASEKQTLRPIWKFDQ-SKLILNNIKLNYFPNRTSILSIVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVI--------VQPSTLVILSRESTQVTCYYHKDC-YPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQI---NITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEP---RWSKTNFKSIEEITGAKQTYIQPNIAQLTIKSATYDARGYYNCSVRSPDSNRELARKLM 2737
            GD   + C++T E    + WL   + L    N VV +    +F NI   D G Y C A   +  I     DV VN    V       ++Y  S + +    D D    I   + SE     P   F Q S LIL+N+KL                 +    Y C+     G    +S  + + V P  C  +E  C +  +CI   + CDGQ  C D SDE +C   R G  +        ++PS  ++   +S  V C+  +     V W   +   + N        G+ L ++N   E S V+ C +  ++  +   +  +  E NI          V++G  I + C ++   P    W+K              ++   N   L I S TY+  G Y CS  + +   E+ R L+
Sbjct: 2839 GDNAQILCTATGEEPIEITWLAIGRDLP---NSVVTRGGQILFRNIKLSDAGRYMCRARDARGQIAESNSDVIVNEHNYVKAVDRHPVSYEGSSVRLQC--DTDTHTQIIWTRDSEP---LPRNSFIQGSVLILDNLKL-----------------EDGGRYICQTDTSTG---TASDYIELRVEPSGCGMKEFRCGNG-ECIELDLVCDGQPHCQDRSDETICGA-RQGRGLDSEPMELGIEPSKDIVNFGDSVDVRCFDKRSSNTKVYWSKVQSSMAFNE----RTSGDMLRIDNANTENSGVFRCTAQSQNGHVVEKDYVLNVEGNIPINNEVQQFSVNYGDIIPLECQTDLEPPVTYTWTKQG--------SVLPSHSTANGILLNISSVTYEDAGLYICSANNSNVRMEIPRLLL 3216
[Close]
BLAST of Ig-like domain-containing protein vs. TrEMBL
Match: H9JRT0 (Uncharacterized protein OS=Bombyx mori OX=7091 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.688e-7
Identity = 54/224 (24.11%), Postives = 94/224 (41.96%), Query Frame = 2 
Query: 2216 VIVQPSTLVILSRESTQVTCYYHKD-CYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFS----GDKSSQINITVIEEVN-ITFIGNPGFVFVDHGGDIEVNCHSNYGEPRWSKTNFKSIEEITGAKQTYIQPNIAQLTIKSATYDARGYYNCSVRSPDSNRELARKLMFIHVHDLTCPEDNIKCDKNTKCIPKHKLCDNVMDCRDNSDEKNC 2869
            + ++P+   +   +S  V C    D    V WR  ++         V + G  L+ NN+ +E + +Y C +    G+ ++  N+ V E  +  T   +    +   G  + + C  N  +P       K    +  ++Q         L IK A     G Y C VR  D     +   + +H+  + C E + +C  N+ CI K  +C+   DC D+SDE+NC
Sbjct: 2757 ITLRPANQTVRPGQSLTVECLVEGDEILDVTWRYDREPSRR-----VEIRGPVLVFNNIEVEDAGIYYCIARSRYGNDTATANVIVTENTDRPTVESHNNEQYAHSGAAVHLGC--NVSQPNLRIYWTKDGRPVPRSRQK----TDGSLFIKVAQKSDSGRYECFVR--DQYGRRSSNYVNLHIEGIKCSELDFRCSDNSGCIDKSLVCNGFRDCYDDSDEENC 2967
[Close]
BLAST of Ig-like domain-containing protein vs. Planmine SMEST
Match: SMESG000042512.1 (SMESG000042512.1)

HSP 1 Score: 2293.85 bits (5943), Expect = 0.000e+0
Identity = 1107/1111 (99.64%), Postives = 1110/1111 (99.91%), Query Frame = 2 
Query:   53 MTVNNVIIYFFLVYFNLKFIYPQITNGESRSKNVIDLHDGSGNGHENVNHHLNAKLMTLDDEDSMKTTNSKILQSSGDGQPEPPDMYPTLHPYAKSRSTATIIVDIAIESDFKSYMLPGSPFSSDLNAFYKKVIRNLQEELSQINVDLGFKIISLRPGPLISKRHSIKAPEAHSPSVFARINVTQYNSSIVNPMIIFHISHCGRLGILGNLTISDQVIFPLYVCPNDHVYCLPNCRKGTYCDGIVDCPSSNLDEAPSCPKCLYKTLQLTSNTEYLNEGENLVLSCNLKESCNELQNKIEWSFPGQLEKYQIRFRGERWINSLPKNKISSGIYKCHLDEESAIKNITVFKRPDVFITNTVSNAVELIMTESYGSDINLWCNCSEGHAQWNNVESTNGYVNQMDREHSKLIIRSLSETTDVKCQVRWGFEERGNIMTSVRINVVCNPATHFQCKRFAGKMCIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKERGDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVFKQSVFVFNISSIDTGIYRCSASSNKAFIDVSVNVIEPPTLKINYPSSVINITAGHDIDIICSITENKASEKQTLRPIWKFDQSKLILNNIKLNYFPNRTSILSIVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSRESTQVTCYYHKDCYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEPRWSKTNFKSIEEITGAKQTYIQPNIAQLTIKSATYDARGYYNCSVRSPDSNRELARKLMFIHVHDLTCPEDNIKCDKNTKCIPKHKLCDNVMDCRDNSDEKNCTKCNFELEIKPKFILLSTAGWGNLQCIVPHKDCLPIQWITRNGDNLSPKNYIKYNHSLFMFNLEPQENQEIICTNGQKSTSAFLTVKYLDITIVPYQPDGSTLYINKGDTQIIECRSTLGTPQWIFPRLNLLSNFGVRYLTDEPNVAKILLTNVQENASGLYVCSVAFTRET 3385
            MTVNNVIIYFFLVYFNLKFIYPQITNGESRSKNVIDLHDGSGNGHENVNHHLNAKL+TLDDEDSMKTTNSKILQSSGDGQPEPPDMYPTLHPYAKSRSTATIIVDIAIESDFKSYMLPGSPFSSDLNAFYKKVIRNLQEELSQINVDLGFKIISLRPGPLISKRHSIKAPEAHSPSVFARINVTQYNSSIVNPMIIFHISHCGRLGILGNLTISDQVIFPLYVCPNDHVYCLPNCRKGTYCDGIVDCPSSNLDEAPSCPKCLYKTLQLTSNTEYLNEGENLVLSCNLKESCNELQNKIEWSFPGQLEKYQIRFRGERWINSLPKNKISSGIYKCHLDE+SAIKNITVFKRPDVFITNTVSNAVELIMTESYGSDINLWCNCSEGHAQWNNVESTNGYVNQMDREHSKLIIRSLSETTDVKCQVRWGFEERGNIMTSVRINVVCNPATHFQCKRFAGKMCIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKERGDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVFKQSVFVFNISSIDTGIYRCSASSNKAFIDVSVNVIEPPTLKINYPSSVINITAGHDIDIICSITE +ASEKQTLRPIWKFDQSKLILNNIKLNYFPNRTSILSIVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSRESTQVTCYYHKDCYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEPRWSKTNFKSIEEITGAKQTYIQPNIAQLTIKSATYDARGYYNCSVRSPDSNRELARKLMFIHVHDLTCPEDNIKCDKNTKCIPKHKLCDNVMDCRDNSDEKNCTKCNFELEIKPKFILLSTAGWGNLQCIVPHKDCLPIQWITRNGDNLSPKNYIKYNHSLFMFNLEPQENQEIICTNGQKSTSAFLTVKYLDITIVPYQPDGSTLYINKGDTQIIECRSTLGTPQWIFPRLNLLSNFGVRYLTDEPNVAKILLTNVQENASGLYVCSVAFTRET
Sbjct:    1 MTVNNVIIYFFLVYFNLKFIYPQITNGESRSKNVIDLHDGSGNGHENVNHHLNAKLLTLDDEDSMKTTNSKILQSSGDGQPEPPDMYPTLHPYAKSRSTATIIVDIAIESDFKSYMLPGSPFSSDLNAFYKKVIRNLQEELSQINVDLGFKIISLRPGPLISKRHSIKAPEAHSPSVFARINVTQYNSSIVNPMIIFHISHCGRLGILGNLTISDQVIFPLYVCPNDHVYCLPNCRKGTYCDGIVDCPSSNLDEAPSCPKCLYKTLQLTSNTEYLNEGENLVLSCNLKESCNELQNKIEWSFPGQLEKYQIRFRGERWINSLPKNKISSGIYKCHLDEKSAIKNITVFKRPDVFITNTVSNAVELIMTESYGSDINLWCNCSEGHAQWNNVESTNGYVNQMDREHSKLIIRSLSETTDVKCQVRWGFEERGNIMTSVRINVVCNPATHFQCKRFAGKMCIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKERGDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVFKQSVFVFNISSIDTGIYRCSASSNKAFIDVSVNVIEPPTLKINYPSSVINITAGHDIDIICSITEPRASEKQTLRPIWKFDQSKLILNNIKLNYFPNRTSILSIVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSRESTQVTCYYHKDCYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEPRWSKTNFKSIEEITGAKQTYIQPNIAQLTIKSATYDARGYYNCSVRSPDSNRELARKLMFIHVHDLTCPEDNIKCDKNTKCIPKHKLCDNVMDCRDNSDEKNCTKCNFELEIKPKFILLSTAGWGNLQCIVPHKDCLPIQWITRNGDNLSPKNYIKYNHSLFMFNLEPQENQEIICTNGQKSTSAFLTVKYLDITIVPYQPDGSTLYINKGDTQIIECRSTLGTPQWIFPRLNLLSNFGVRYLTDEPNVAKILLTNVQENASGLYVCSVAFTRET 1111
[Close]
BLAST of Ig-like domain-containing protein vs. Planmine SMEST
Match: SMESG000042512.1 (SMESG000042512.1)

HSP 1 Score: 2230.29 bits (5778), Expect = 0.000e+0
Identity = 1083/1111 (97.48%), Postives = 1086/1111 (97.75%), Query Frame = 2 
Query:   53 MTVNNVIIYFFLVYFNLKFIYPQITNGESRSKNVIDLHDGSGNGHENVNHHLNAKLMTLDDEDSMKTTNSKILQSSGDGQPEPPDMYPTLHPYAKSRSTATIIVDIAIESDFKSYMLPGSPFSSDLNAFYKKVIRNLQEELSQINVDLGFKIISLRPGPLISKRHSIKAPEAHSPSVFARINVTQYNSSIVNPMIIFHISHCGRLGILGNLTISDQVIFPLYVCPNDHVYCLPNCRKGTYCDGIVDCPSSNLDEAPSCPKCLYKTLQLTSNTEYLNEGENLVLSCNLKESCNELQNKIEWSFPGQLEKYQIRFRGERWINSLPKNKISSGIYKCHLDEESAIKNITVFKRPDVFITNTVSNAVELIMTESYGSDINLWCNCSEGHAQWNNVESTNGYVNQMDREHSKLIIRSLSETTDVKCQVRWGFEERGNIMTSVRINVVCNPATHFQCKRFAGKMCIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKERGDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVFKQSVFVFNISSIDTGIYRCSASSNKAFIDVSVNVIEPPTLKINYPSSVINITAGHDIDIICSITENKASEKQTLRPIWKFDQSKLILNNIKLNYFPNRTSILSIVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSRESTQVTCYYHKDCYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEPRWSKTNFKSIEEITGAKQTYIQPNIAQLTIKSATYDARGYYNCSVRSPDSNRELARKLMFIHVHDLTCPEDNIKCDKNTKCIPKHKLCDNVMDCRDNSDEKNCTKCNFELEIKPKFILLSTAGWGNLQCIVPHKDCLPIQWITRNGDNLSPKNYIKYNHSLFMFNLEPQENQEIICTNGQKSTSAFLTVKYLDITIVPYQPDGSTLYINKGDTQIIECRSTLGTPQWIFPRLNLLSNFGVRYLTDEPNVAKILLTNVQENASGLYVCSVAFTRET 3385
            MTVNNVIIYFFLVYFNLKFIYPQITNGESRSK                        +TLDDEDSMKTTNSKILQSSGDGQPEPPDMYPTLHPYAKSRSTATIIVDIAIESDFKSYMLPGSPFSSDLNAFYKKVIRNLQEELSQINVDLGFKIISLRPGPLISKRHSIKAPEAHSPSVFARINVTQYNSSIVNPMIIFHISHCGRLGILGNLTISDQVIFPLYVCPNDHVYCLPNCRKGTYCDGIVDCPSSNLDEAPSCPKCLYKTLQLTSNTEYLNEGENLVLSCNLKESCNELQNKIEWSFPGQLEKYQIRFRGERWINSLPKNKISSGIYKCHLDE+SAIKNITVFKRPDVFITNTVSNAVELIMTESYGSDINLWCNCSEGHAQWNNVESTNGYVNQMDREHSKLIIRSLSETTDVKCQVRWGFEERGNIMTSVRINVVCNPATHFQCKRFAGKMCIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKERGDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVFKQSVFVFNISSIDTGIYRCSASSNKAFIDVSVNVIEPPTLKINYPSSVINITAGHDIDIICSITE +ASEKQTLRPIWKFDQSKLILNNIKLNYFPNRTSILSIVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSRESTQVTCYYHKDCYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEPRWSKTNFKSIEEITGAKQTYIQPNIAQLTIKSATYDARGYYNCSVRSPDSNRELARKLMFIHVHDLTCPEDNIKCDKNTKCIPKHKLCDNVMDCRDNSDEKNCTKCNFELEIKPKFILLSTAGWGNLQCIVPHKDCLPIQWITRNGDNLSPKNYIKYNHSLFMFNLEPQENQEIICTNGQKSTSAFLTVKYLDITIVPYQPDGSTLYINKGDTQIIECRSTLGTPQWIFPRLNLLSNFGVRYLTDEPNVAKILLTNVQENASGLYVCSVAFTRET
Sbjct:    1 MTVNNVIIYFFLVYFNLKFIYPQITNGESRSK------------------------LTLDDEDSMKTTNSKILQSSGDGQPEPPDMYPTLHPYAKSRSTATIIVDIAIESDFKSYMLPGSPFSSDLNAFYKKVIRNLQEELSQINVDLGFKIISLRPGPLISKRHSIKAPEAHSPSVFARINVTQYNSSIVNPMIIFHISHCGRLGILGNLTISDQVIFPLYVCPNDHVYCLPNCRKGTYCDGIVDCPSSNLDEAPSCPKCLYKTLQLTSNTEYLNEGENLVLSCNLKESCNELQNKIEWSFPGQLEKYQIRFRGERWINSLPKNKISSGIYKCHLDEKSAIKNITVFKRPDVFITNTVSNAVELIMTESYGSDINLWCNCSEGHAQWNNVESTNGYVNQMDREHSKLIIRSLSETTDVKCQVRWGFEERGNIMTSVRINVVCNPATHFQCKRFAGKMCIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKERGDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVFKQSVFVFNISSIDTGIYRCSASSNKAFIDVSVNVIEPPTLKINYPSSVINITAGHDIDIICSITEPRASEKQTLRPIWKFDQSKLILNNIKLNYFPNRTSILSIVKATKDVESEYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCDGQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSRESTQVTCYYHKDCYPVEWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINITVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEPRWSKTNFKSIEEITGAKQTYIQPNIAQLTIKSATYDARGYYNCSVRSPDSNRELARKLMFIHVHDLTCPEDNIKCDKNTKCIPKHKLCDNVMDCRDNSDEKNCTKCNFELEIKPKFILLSTAGWGNLQCIVPHKDCLPIQWITRNGDNLSPKNYIKYNHSLFMFNLEPQENQEIICTNGQKSTSAFLTVKYLDITIVPYQPDGSTLYINKGDTQIIECRSTLGTPQWIFPRLNLLSNFGVRYLTDEPNVAKILLTNVQENASGLYVCSVAFTRET 1087
[Close]
BLAST of Ig-like domain-containing protein vs. Planmine SMEST
Match: SMESG000026265.1 (SMESG000026265.1)

HSP 1 Score: 51.6026 bits (122), Expect = 4.110e-6
Identity = 73/323 (22.60%), Postives = 132/323 (40.87%), Query Frame = 2 
Query: 2150 DGQKQCHDG---SDEEVCNKCRNGFVIVQPSTLVILSRESTQVTC----YYHKDCYPVEWRLAKDQQSVN----------SINGVSVMGNKLMLNNVGLEASKVYECFSGDK-SSQINITVIEE---VNITFIGNPGFVFVDHGGDIEVNCHSN------YGEPRWSKTNFKSIEEITGAKQTYIQPNIAQLTI-KSATYDARGYYNCSVRSPDSNRELARKLMFIHVHDLTCPEDNIKCDKNTKCIPKHKLCDNVMDCRDNSDEKNCTKCNFELEIKPKFILLSTAGWGNLQCIVPHKDCLPIQWITRNGDNLSPKNYIKYN 3034
            +G+ +C  G    +  V     +G ++  PS + ++     +  C     Y+ D   + WR   +   +N          + + ++   + + L+   +  S   EC SG+  ++Q  + V+E+    NIT    P  + V      E  C         YGEP++     K +E       T + P+  ++T              CSV     N++++   ++I V + TCP +  +C +N +C+P  K CD + DC D SDE + T CN     +P F         ++    P +  +   WI  +G+N    NY + N
Sbjct:  479 EGRYECRYGIVRKEATVMLDIDSGMIVTNPSKIKVIEGSPVEFHCRIDDVYNIDNRNLSWRFYNNNFQINYSLENSKWRLTESKIADHTSFINLDRATMADSGYIECISGNGLTAQSQLIVVEDKHKFNITV--TPNHLRVRKNQLFEFECFGQSDEGIPYGEPKFEFPGGKPVENDKRFLVTTVGPSRIRITAPHGVNIKDELKLICSV-----NKQVS--AVYIQVQE-TCPPNQRQC-QNRQCLPVGKFCDGIADCVDGSDE-DPTVCN---SCEPAFTTCQ-----DVYGFAPTRKTINKNWIC-DGENDCGNNYDEIN 780
The following BLAST results are available for this feature:
BLAST of Ig-like domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ig-like domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ig-like domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ig-like domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
hspg23.545e-627.82heparan sulfate proteoglycan 2 [Source:ZFIN;Acc:ZD... [more]
hspg23.787e-627.82heparan sulfate proteoglycan 2 [Source:ZFIN;Acc:ZD... [more]
hspg24.192e-627.82heparan sulfate proteoglycan 2 [Source:ZFIN;Acc:ZD... [more]
back to top
BLAST of Ig-like domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
LRP64.216e-646.30LDL receptor related protein 6 [Source:NCBI gene;A... [more]
back to top
BLAST of Ig-like domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Hspg23.062e-629.46perlecan (heparan sulfate proteoglycan 2) [Source:... [more]
Hspg23.063e-629.46perlecan (heparan sulfate proteoglycan 2) [Source:... [more]
back to top
BLAST of Ig-like domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|A8X765|EGG1_CAEBR6.386e-622.63LDL receptor repeat-containing protein egg-1 OS=Ca... [more]
back to top
BLAST of Ig-like domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4D6FZI71.499e-1098.63Ig-like domain-containing protein (Fragment) OS=Sc... [more]
A0A1B6CLV91.261e-924.52Uncharacterized protein (Fragment) OS=Clastoptera ... [more]
A0A1B6EDX61.613e-924.52Uncharacterized protein OS=Clastoptera arizonana O... [more]
A0A1B6DS911.687e-924.52Uncharacterized protein (Fragment) OS=Clastoptera ... [more]
H9JRT05.688e-724.11Uncharacterized protein OS=Bombyx mori OX=7091 PE=... [more]
back to top
BLAST of Ig-like domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ig-like domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ig-like domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ig-like domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ig-like domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ig-like domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000042512.10.000e+099.64SMESG000042512.1[more]
SMESG000042512.10.000e+097.48SMESG000042512.1[more]
SMESG000026265.14.110e-622.60SMESG000026265.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021103 ID=SMED30021103|Name=Ig-like domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=3625bp
AGGCATTAAAACCCAAATTGAAAATTAAAAAGTCATTTTAACATAGAAAA
TTATGACAGTAAATAATGTAATTATATATTTTTTCCTTGTATATTTCAAT
TTGAAATTTATTTATCCTCAAATAACAAATGGAGAAAGCAGATCAAAGAA
TGTAATAGATTTGCATGATGGTTCTGGGAATGGACACGAGAATGTAAACC
ATCATTTAAATGCAAAATTGATGACTCTTGATGACGAGGATTCAATGAAA
ACGACTAATAGCAAAATTTTACAATCCAGTGGAGATGGGCAACCAGAACC
GCCGGATATGTATCCTACTTTGCATCCATATGCAAAATCTAGATCTACTG
CTACAATTATCGTGGATATTGCAATTGAAAGCGATTTCAAGTCCTATATG
CTTCCTGGGTCTCCATTTAGTTCTGATCTAAATGCATTTTATAAAAAAGT
TATAAGGAATCTCCAAGAAGAGTTATCACAAATTAATGTTGATTTAGGAT
TTAAAATTATTTCACTAAGACCAGGACCTCTTATTTCCAAAAGACATTCA
ATAAAGGCTCCTGAAGCCCACAGCCCATCTGTATTTGCTAGAATTAATGT
CACCCAGTACAATTCGTCAATTGTGAATCCAATGATAATATTTCATATTT
CCCATTGTGGAAGATTAGGGATTCTTGGAAATCTAACAATATCTGATCAA
GTTATATTTCCTCTTTATGTATGTCCAAACGATCATGTGTATTGCCTACC
AAACTGTAGAAAAGGAACCTATTGCGATGGAATAGTAGACTGTCCGAGCT
CAAACCTTGATGAAGCACCATCTTGTCCAAAATGTTTGTATAAAACATTA
CAATTAACATCAAACACAGAATATTTGAATGAAGGAGAAAATTTAGTGCT
TTCTTGTAATTTGAAGGAAAGTTGCAATGAGTTACAAAATAAAATCGAAT
GGAGTTTTCCAGGACAACTGGAAAAATATCAAATCAGATTTAGAGGAGAA
AGATGGATAAATTCTTTACCGAAAAACAAAATATCATCTGGAATCTACAA
ATGCCATTTAGATGAAGAGTCAGCAATAAAAAATATTACAGTTTTCAAGA
GGCCAGACGTATTTATAACGAACACTGTTTCAAATGCAGTCGAACTAATA
ATGACAGAATCGTACGGTTCCGATATAAACTTATGGTGTAATTGCTCCGA
GGGCCATGCTCAGTGGAATAATGTCGAATCCACGAACGGGTACGTCAACC
AGATGGATAGAGAGCATTCTAAATTAATTATCCGGTCCTTATCCGAGACA
ACTGATGTCAAATGCCAGGTTCGTTGGGGATTCGAGGAAAGAGGTAATAT
TATGACATCTGTACGAATAAATGTCGTATGTAATCCTGCAACACATTTCC
AATGTAAAAGGTTTGCTGGTAAGATGTGCATCCCCATTTCGCAAAAGTGC
GATTCAATTACACAATGTGAAGACAGCTCAGATGAAGAAGAATGCAACTA
TTGTTCAGACAAATCACTGAGTATCAGCTCTGGACAGAACGTATTTAAAG
AAAGAGGAGATACATTAACAATGACTTGTTCCTCTACTATGGAAGCATGC
TATCCTCTTATTTGGTTGCGGTTTAATAAGCCACTGGAAATGCATAGAAA
TTTAGTAGTTTTCAAGCAATCAGTTTTTGTTTTTAACATATCCTCAATAG
ATACTGGAATTTATCGTTGCTCAGCCTCATCAAATAAGGCTTTCATTGAC
GTTTCAGTAAATGTTATTGAACCTCCTACATTGAAAATAAACTATCCATC
CTCGGTTATCAACATTACTGCTGGTCACGACATAGACATCATATGTTCAA
TAACGGAAAACAAGGCCTCCGAGAAGCAAACGTTAAGACCAATTTGGAAA
TTTGATCAATCTAAACTGATTTTGAATAATATCAAGCTGAATTATTTTCC
GAACAGAACATCAATTTTGTCAATTGTGAAAGCAACGAAAGATGTTGAAA
GTGAATATACATGTGAAGTTTTGTGGGGTCTGGGATATTCCAAAAAATCA
TCAATCACGGTGAGAGTTAATGTTATTCCATTGACATGCAGTTATAGGGA
GAAAATGTGTGCAGATAAAATGAAGTGTATTCCTTCTTCCATGTGGTGTG
ATGGGCAGAAGCAGTGCCATGATGGTTCTGATGAAGAAGTGTGCAATAAA
TGTCGTAATGGATTTGTAATTGTTCAACCTTCGACTCTTGTGATTCTATC
ACGAGAATCAACTCAAGTTACATGTTATTACCACAAAGATTGCTATCCTG
TGGAATGGAGACTGGCCAAGGATCAACAGTCCGTCAATTCTATAAATGGC
GTAAGTGTGATGGGGAATAAATTAATGCTAAATAACGTTGGATTGGAAGC
ATCAAAAGTGTACGAATGTTTTTCAGGAGACAAATCTTCTCAGATAAATA
TCACTGTTATTGAAGAAGTCAATATAACATTTATTGGCAATCCTGGATTC
GTATTCGTTGACCATGGAGGCGACATTGAGGTGAATTGCCATTCAAATTA
TGGAGAGCCACGATGGTCAAAAACTAATTTTAAATCTATTGAGGAAATCA
CCGGAGCGAAACAAACCTATATTCAGCCAAATATAGCGCAGCTGACAATA
AAATCTGCTACATATGACGCACGAGGATATTACAATTGCTCTGTAAGATC
GCCCGATTCAAATAGAGAATTGGCTAGAAAGCTTATGTTTATTCATGTTC
ATGATTTGACTTGCCCTGAAGATAACATTAAATGTGATAAAAATACCAAA
TGTATTCCAAAACACAAATTATGCGATAATGTTATGGACTGCAGAGATAA
TTCTGACGAGAAGAACTGTACAAAATGTAACTTTGAGCTGGAAATTAAAC
CTAAATTTATACTTCTATCAACTGCCGGATGGGGTAATCTTCAGTGCATT
GTCCCCCATAAAGATTGTCTACCTATTCAATGGATTACCAGAAATGGGGA
CAATTTAAGTCCCAAAAACTACATAAAATATAACCATAGTCTTTTTATGT
TTAATCTTGAGCCTCAAGAGAATCAAGAAATTATTTGCACTAATGGTCAG
AAATCGACATCAGCCTTTCTAACAGTAAAATATTTAGATATAACAATTGT
GCCATATCAGCCGGATGGTTCGACACTATATATTAATAAAGGCGACACCC
AAATAATTGAATGCCGATCAACCTTGGGAACTCCACAATGGATTTTTCCT
AGGTTGAATTTGCTATCAAATTTCGGAGTTCGATATTTAACTGATGAGCC
AAATGTTGCAAAGATTTTACTTACAAATGTCCAAGAAAATGCCAGTGGAC
TTTATGTTTGCTCTGTGGCATTTACTAGAGAAACAAAAAAGAAATCATTG
TCGATCAAAGTCATCTGAAAGAAATTCAGTAAAAACAGTCTGTTAAAGCT
CATTTGTTGAGTAAATAACATTTCATAGTATTAGACTTGTGCATTTAATA
TAATTATTATTATTGTGATTGTTACTGTTGCTATTATTATTATTTTATTA
ATTTTATTACTATCATTATTACTTATCATTGAATGTTAGTGTTTTTATTT
CATCAAATATAAAATTATTCGGTCA
back to top

protein sequence of SMED30021103-orf-1

>SMED30021103-orf-1 ID=SMED30021103-orf-1|Name=SMED30021103-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1122bp
MTVNNVIIYFFLVYFNLKFIYPQITNGESRSKNVIDLHDGSGNGHENVNH
HLNAKLMTLDDEDSMKTTNSKILQSSGDGQPEPPDMYPTLHPYAKSRSTA
TIIVDIAIESDFKSYMLPGSPFSSDLNAFYKKVIRNLQEELSQINVDLGF
KIISLRPGPLISKRHSIKAPEAHSPSVFARINVTQYNSSIVNPMIIFHIS
HCGRLGILGNLTISDQVIFPLYVCPNDHVYCLPNCRKGTYCDGIVDCPSS
NLDEAPSCPKCLYKTLQLTSNTEYLNEGENLVLSCNLKESCNELQNKIEW
SFPGQLEKYQIRFRGERWINSLPKNKISSGIYKCHLDEESAIKNITVFKR
PDVFITNTVSNAVELIMTESYGSDINLWCNCSEGHAQWNNVESTNGYVNQ
MDREHSKLIIRSLSETTDVKCQVRWGFEERGNIMTSVRINVVCNPATHFQ
CKRFAGKMCIPISQKCDSITQCEDSSDEEECNYCSDKSLSISSGQNVFKE
RGDTLTMTCSSTMEACYPLIWLRFNKPLEMHRNLVVFKQSVFVFNISSID
TGIYRCSASSNKAFIDVSVNVIEPPTLKINYPSSVINITAGHDIDIICSI
TENKASEKQTLRPIWKFDQSKLILNNIKLNYFPNRTSILSIVKATKDVES
EYTCEVLWGLGYSKKSSITVRVNVIPLTCSYREKMCADKMKCIPSSMWCD
GQKQCHDGSDEEVCNKCRNGFVIVQPSTLVILSRESTQVTCYYHKDCYPV
EWRLAKDQQSVNSINGVSVMGNKLMLNNVGLEASKVYECFSGDKSSQINI
TVIEEVNITFIGNPGFVFVDHGGDIEVNCHSNYGEPRWSKTNFKSIEEIT
GAKQTYIQPNIAQLTIKSATYDARGYYNCSVRSPDSNRELARKLMFIHVH
DLTCPEDNIKCDKNTKCIPKHKLCDNVMDCRDNSDEKNCTKCNFELEIKP
KFILLSTAGWGNLQCIVPHKDCLPIQWITRNGDNLSPKNYIKYNHSLFMF
NLEPQENQEIICTNGQKSTSAFLTVKYLDITIVPYQPDGSTLYINKGDTQ
IIECRSTLGTPQWIFPRLNLLSNFGVRYLTDEPNVAKILLTNVQENASGL
YVCSVAFTRETKKKSLSIKVI*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR036055LDL_receptor-like_sf
IPR036179Ig-like_dom_sf
IPR013809ENTH
IPR002172LDrepeatLR_classA_rpt
IPR003599Ig_sub
IPR003598Ig_sub2
IPR013783Ig-like_fold
IPR023415LDLR_class-A_CS
IPR007110Ig-like_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
GO:0005509calcium ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 127..147
NoneNo IPR availablePANTHERPTHR24270FAMILY NOT NAMEDcoord: 235..1013
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPRINTSPR00261LDLRECEPTORcoord: 457..478
score: 46.78
coord: 690..711
score: 50.11
coord: 915..936
score: 47.89
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 678..716
e-value: 6.8E-11
score: 52.2
coord: 903..941
e-value: 8.0E-12
score: 55.3
coord: 442..483
e-value: 2.1E-9
score: 47.2
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPFAMPF00057Ldl_recept_acoord: 443..481
e-value: 3.1E-6
score: 27.3
coord: 678..714
e-value: 7.4E-7
score: 29.3
coord: 903..939
e-value: 2.0E-8
score: 34.3
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 678..715
score: 11.738
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 442..482
score: 11.55
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 903..940
score: 12.413
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 904..939
e-value: 1.3492E-9
score: 52.209
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 445..481
e-value: 6.39223E-7
score: 44.8902
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 679..714
e-value: 6.78217E-9
score: 50.283
IPR003598Immunoglobulin subtype 2SMARTSM00408igc2_5coord: 820..886
e-value: 0.05
score: 19.6
coord: 500..563
e-value: 0.0073
score: 25.5
IPR003599Immunoglobulin subtypeSMARTSM00409IG_3ccoord: 814..900
e-value: 0.025
score: 23.7
coord: 583..673
e-value: 0.12
score: 21.4
coord: 270..348
e-value: 27.0
score: 7.7
coord: 364..438
e-value: 41.0
score: 6.2
coord: 726..803
e-value: 0.059
score: 22.5
coord: 1039..1121
e-value: 1.1
score: 18.3
coord: 494..570
e-value: 0.0084
score: 25.3
IPR013783Immunoglobulin-like foldGENE3DG3DSA:2.60.40.10coord: 493..567
e-value: 1.4E-5
score: 26.8
IPR013783Immunoglobulin-like foldGENE3DG3DSA:2.60.40.10coord: 1035..1121
e-value: 1.7E-5
score: 26.9
coord: 815..900
e-value: 8.7E-6
score: 27.9
IPR013783Immunoglobulin-like foldGENE3DG3DSA:2.60.40.10coord: 568..674
e-value: 9.3E-6
score: 27.7
IPR036055LDL receptor-like superfamilyGENE3DG3DSA:4.10.400.10coord: 439..481
e-value: 2.7E-8
score: 35.9
IPR036055LDL receptor-like superfamilyGENE3DG3DSA:4.10.400.10coord: 675..720
e-value: 1.2E-9
score: 39.8
IPR036055LDL receptor-like superfamilyGENE3DG3DSA:4.10.400.10coord: 901..953
e-value: 5.0E-11
score: 44.2
IPR036055LDL receptor-like superfamilySUPERFAMILYSSF57424LDL receptor-like modulecoord: 903..944
IPR036055LDL receptor-like superfamilySUPERFAMILYSSF57424LDL receptor-like modulecoord: 442..482
IPR036055LDL receptor-like superfamilySUPERFAMILYSSF57424LDL receptor-like modulecoord: 673..714
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 692..717
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 575..669
score: 7.722
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 1037..1117
score: 6.742
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 487..572
score: 7.685
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 259..346
score: 7.776
IPR036179Immunoglobulin-like domain superfamilySUPERFAMILYSSF48726Immunoglobulincoord: 567..673
IPR036179Immunoglobulin-like domain superfamilySUPERFAMILYSSF48726Immunoglobulincoord: 491..562
IPR036179Immunoglobulin-like domain superfamilySUPERFAMILYSSF48726Immunoglobulincoord: 1042..1120
IPR036179Immunoglobulin-like domain superfamilySUPERFAMILYSSF48726Immunoglobulincoord: 722..804
IPR036179Immunoglobulin-like domain superfamilySUPERFAMILYSSF48726Immunoglobulincoord: 809..888