Splicing factor 3B subunit 2

Overview
NameSplicing factor 3B subunit 2
Smed IDSMED30021079
Length (bp)1569
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Splicing factor 3B subunit 2 (SMED30021079) t-SNE clustered cells

Violin plots show distribution of expression levels for Splicing factor 3B subunit 2 (SMED30021079) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Splicing factor 3B subunit 2 (SMED30021079) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Splicing factor 3B subunit 2 (SMED30021079) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30021079

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30021079SMESG000041240.1 SmedASXL_008521SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30021079SMESG000041240.1 dd_Smed_v4_6657_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30021079SMESG000041240.1 dd_Smed_v4_6657_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30021079SMESG000041240.1 dd_Smed_v4_6657_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Human
Match: SF3B2 (splicing factor 3b subunit 2 [Source:HGNC Symbol;Acc:HGNC:10769])

HSP 1 Score: 351.673 bits (901), Expect = 4.166e-111
Identity = 160/264 (60.61%), Postives = 202/264 (76.52%), Query Frame = 3 
Query:  345 KMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWG 1136
            K+SKK+ +++NR ++ +LK  V +PD+VE  D  ++DP  L+ LK+ RN+VPVPRHWC   KYLQGKRG  KPPF+LP+FI +TGI EMR+   +KE +K++K+KM++K+RPK+G +DI Y+KL++AFF  QTKP+LT  GD+YY+GKE E R KE +PG LSDELR++LGM  GPNA K PPPWLIA QRYGPPPSYPNLKIPGLN  IP  CSFG+HAGGWGKPPVD+ GKPLYGDVF    N A      + +E D   WG
Sbjct:  431 KLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGT--NAAEFQTKTEEEEIDRTPWG 692
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Human
Match: SF3B2 (splicing factor 3b subunit 2 [Source:HGNC Symbol;Acc:HGNC:10769])

HSP 1 Score: 351.673 bits (901), Expect = 6.247e-111
Identity = 160/264 (60.61%), Postives = 202/264 (76.52%), Query Frame = 3 
Query:  345 KMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWG 1136
            K+SKK+ +++NR ++ +LK  V +PD+VE  D  ++DP  L+ LK+ RN+VPVPRHWC   KYLQGKRG  KPPF+LP+FI +TGI EMR+   +KE +K++K+KM++K+RPK+G +DI Y+KL++AFF  QTKP+LT  GD+YY+GKE E R KE +PG LSDELR++LGM  GPNA K PPPWLIA QRYGPPPSYPNLKIPGLN  IP  CSFG+HAGGWGKPPVD+ GKPLYGDVF    N A      + +E D   WG
Sbjct:  448 KLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGT--NAAEFQTKTEEEEIDRTPWG 709
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Human
Match: SF3B2 (splicing factor 3b subunit 2 [Source:HGNC Symbol;Acc:HGNC:10769])

HSP 1 Score: 187.193 bits (474), Expect = 2.662e-54
Identity = 88/131 (67.18%), Postives = 98/131 (74.81%), Query Frame = 3 
Query:  744 KPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWG 1136
            KP+LT  GD+YY+GKE E R KE +PG LSDELR++LGM  GPNA K PPPWLIA QRYGPPPSYPNLKIPGLN  IP  CSFG+HAGGWGKPPVD+ GKPLYGDVF    N A      + +E D   WG
Sbjct:    2 KPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGT--NAAEFQTKTEEEEIDRTPWG 130
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Celegans
Match: sftb-2 (Splicing Factor ThreeB (3b) Subunit homolog [Source:UniProtKB/TrEMBL;Acc:O16997])

HSP 1 Score: 315.849 bits (808), Expect = 1.047e-100
Identity = 148/264 (56.06%), Postives = 195/264 (73.86%), Query Frame = 3 
Query:  345 KMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWG 1136
            K+S+++ +   + SI  LK    + D+VE  D  SRDP  L+ +KS RN+VPVPRHW A  KYL GKRGF +PPF+LP+FI +TGI +MR+   +KE  +SLK+KM+++ RPK+G +DI Y+KL++AFF  QTKP +TK G++YY+GKE+E   ++ +PG +SDELR+ALGM  G NA K PPPWLIA QRYGPPPS+P++KIPGLN  IP GC+FG+HAGGWGKPPVD+ G PLYGDVF  A   AP     D  + + +YWG
Sbjct:  146 KLSRRKLRISLQPSIAKLKETTLRADVVEWADVTSRDPYLLVAMKSYRNSVPVPRHWNAKRKYLAGKRGFERPPFELPDFIKRTGIQDMREALLEKEESQSLKSKMRERARPKLGKIDIDYQKLHDAFFKWQTKPAMTKMGELYYEGKEMEAMMRDKKPGEMSDELRIALGMPIGSNAFKFPPPWLIAMQRYGPPPSFPHIKIPGLNAPIPEGCAFGYHAGGWGKPPVDEYGHPLYGDVFGLA---APAFEPEDESQIERRYWG 406
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Fly
Match: Sf3b2 (gene:FBgn0031493 transcript:FBtr0335484)

HSP 1 Score: 341.658 bits (875), Expect = 7.098e-109
Identity = 193/368 (52.45%), Postives = 250/368 (67.93%), Query Frame = 3 
Query:  375 NRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLD--ADEDD-EKYWGXXXXXXXXXXXXXXXXXXXXXXXXASESEDLAXXXXXXXXXXXXXFNQGFVPAMNIELRXXXXXXXXXXXXXXXXXQLFKIIPEVKSN-IGSNIMGSDKVYSLSSSEKNMQ 1466
             R+S+ +LK  V +PD+VE  D  +RDP  L++LK+ RNTV VPRHWC   KYLQGKRG  KPPF LP FI KTGIMEMR++  ++E  K+LK KM++++RPK+G +DI Y+KL++AFF  QTKP +T  GD+YY+GKE E R KE +PG LS+ELR+ALGM  GPN+ K PPPWLIAQQRYGPPPSYPNLKIPGLN  IP G SFG+HAGGWGKPPVD++GKPLYGDVF         ++DLD   DE D E+       +  +   EEEE D ++  +   E+  + P      PSG T+   G     NIELRKK  E E+ +        L++++PE +++ IG+++MGS  VY +S S  N Q
Sbjct:  308 TRLSVAELKQLVSRPDVVEMHDVTARDPKLLVQLKAYRNTVQVPRHWCFKRKYLQGKRGIEKPPFDLPAFIKKTGIMEMRESLQEREDAKTLKAKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPRMTIHGDLYYEGKEFETRLKEKKPGDLSEELRIALGMPVGPNSHKIPPPWLIAQQRYGPPPSYPNLKIPGLNAPIPDGTSFGYHAGGWGKPPVDENGKPLYGDVFGTN------ILDLDNGVDEADIERNQWGELESESEESSEEEEEDGEDLGDQQDETGLVTPVEGLVTPSGLTSVPAGMETPENIELRKKKIEAEMEDNETPV---LYQVLPEKRTDRIGASMMGSTHVYDVSGSGANKQ 666
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Fly
Match: Sf3b2 (gene:FBgn0031493 transcript:FBtr0077669)

HSP 1 Score: 341.658 bits (875), Expect = 7.098e-109
Identity = 193/368 (52.45%), Postives = 250/368 (67.93%), Query Frame = 3 
Query:  375 NRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLD--ADEDD-EKYWGXXXXXXXXXXXXXXXXXXXXXXXXASESEDLAXXXXXXXXXXXXXFNQGFVPAMNIELRXXXXXXXXXXXXXXXXXQLFKIIPEVKSN-IGSNIMGSDKVYSLSSSEKNMQ 1466
             R+S+ +LK  V +PD+VE  D  +RDP  L++LK+ RNTV VPRHWC   KYLQGKRG  KPPF LP FI KTGIMEMR++  ++E  K+LK KM++++RPK+G +DI Y+KL++AFF  QTKP +T  GD+YY+GKE E R KE +PG LS+ELR+ALGM  GPN+ K PPPWLIAQQRYGPPPSYPNLKIPGLN  IP G SFG+HAGGWGKPPVD++GKPLYGDVF         ++DLD   DE D E+       +  +   EEEE D ++  +   E+  + P      PSG T+   G     NIELRKK  E E+ +        L++++PE +++ IG+++MGS  VY +S S  N Q
Sbjct:  308 TRLSVAELKQLVSRPDVVEMHDVTARDPKLLVQLKAYRNTVQVPRHWCFKRKYLQGKRGIEKPPFDLPAFIKKTGIMEMRESLQEREDAKTLKAKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPRMTIHGDLYYEGKEFETRLKEKKPGDLSEELRIALGMPVGPNSHKIPPPWLIAQQRYGPPPSYPNLKIPGLNAPIPDGTSFGYHAGGWGKPPVDENGKPLYGDVFGTN------ILDLDNGVDEADIERNQWGELESESEESSEEEEEDGEDLGDQQDETGLVTPVEGLVTPSGLTSVPAGMETPENIELRKKKIEAEMEDNETPV---LYQVLPEKRTDRIGASMMGSTHVYDVSGSGANKQ 666
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Zebrafish
Match: sf3b2 (splicing factor 3b, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-070928-1])

HSP 1 Score: 347.821 bits (891), Expect = 2.093e-110
Identity = 162/264 (61.36%), Postives = 202/264 (76.52%), Query Frame = 3 
Query:  345 KMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWG 1136
            K+SKK+ +++NR+++ +LK  V +PD+VE  D  +++P  L+ LK+ RNTVPVPRHWC   KYLQGKRG  KPPF+LPEFI +TGI EMR+   +KE  K++K KM++K+RPK+G +DI Y+KL++AFF  Q KP+LT  GD+YY+GKE E R KE +PG LSDELRVALGM TGPN+ K PPPWLIA QRYGPPPSYPNLKIPGLN  IP GCSFG+HAGGWGKPPVD+ GKPLYGDVF    N+       + +E D   WG
Sbjct:  373 KLSKKKLRRMNRLTVAELKQLVARPDVVEMHDVTAQEPKLLVHLKATRNTVPVPRHWCFKRKYLQGKRGIEKPPFELPEFIRRTGIQEMREALQEKEDAKTMKTKMREKVRPKMGKIDIDYQKLHDAFFKWQIKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRVALGMPTGPNSHKVPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPEGCSFGYHAGGWGKPPVDETGKPLYGDVFGT--NSIDFQAKAEEEEVDRTPWG 634
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Xenopus
Match: stt3b (STT3B, catalytic subunit of the oligosaccharyltransferase complex [Source:Xenbase;Acc:XB-GENE-969894])

HSP 1 Score: 343.969 bits (881), Expect = 5.508e-110
Identity = 155/245 (63.27%), Postives = 193/245 (78.78%), Query Frame = 3 
Query:  336 DGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFAN 1070
            D  K+SKK+ +++NR ++ +LK  V +PD+VE  D  + DP  L+ LK  RN+VPVPRHWC   KYLQGKRG  KPPF+LP+FI +TGI EMR+   +KE +K++K+KM++K+RPK+G +DI Y+KL++AFF  Q+KP+LT  GD+YY+GKE E R KE +PG LSDELR+ LGM  GPNA K PPPWLIA QRYGPPPSYPNLKIPGLN  IP GCSFG+HAGGWGKPPVD+ GKPLYGDVF  
Sbjct:  253 DAPKLSKKKLRRMNRFTVAELKQLVSRPDVVEMHDVTAPDPKLLVHLKGTRNSVPVPRHWCFKRKYLQGKRGIEKPPFQLPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQSKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRITLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPEGCSFGYHAGGWGKPPVDEMGKPLYGDVFGT 497
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Xenopus
Match: stt3b (STT3B, catalytic subunit of the oligosaccharyltransferase complex [Source:Xenbase;Acc:XB-GENE-969894])

HSP 1 Score: 345.51 bits (885), Expect = 6.890e-110
Identity = 155/245 (63.27%), Postives = 193/245 (78.78%), Query Frame = 3 
Query:  336 DGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFAN 1070
            D  K+SKK+ +++NR ++ +LK  V +PD+VE  D  + DP  L+ LK  RN+VPVPRHWC   KYLQGKRG  KPPF+LP+FI +TGI EMR+   +KE +K++K+KM++K+RPK+G +DI Y+KL++AFF  Q+KP+LT  GD+YY+GKE E R KE +PG LSDELR+ LGM  GPNA K PPPWLIA QRYGPPPSYPNLKIPGLN  IP GCSFG+HAGGWGKPPVD+ GKPLYGDVF  
Sbjct:  313 DAPKLSKKKLRRMNRFTVAELKQLVSRPDVVEMHDVTAPDPKLLVHLKGTRNSVPVPRHWCFKRKYLQGKRGIEKPPFQLPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQSKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRITLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPEGCSFGYHAGGWGKPPVDEMGKPLYGDVFGT 557
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Mouse
Match: Sf3b2 (splicing factor 3b, subunit 2 [Source:MGI Symbol;Acc:MGI:2441856])

HSP 1 Score: 351.288 bits (900), Expect = 3.496e-111
Identity = 160/264 (60.61%), Postives = 202/264 (76.52%), Query Frame = 3 
Query:  345 KMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWG 1136
            K+SKK+ +++NR ++ +LK  V +PD+VE  D  ++DP  L+ LK+ RN+VPVPRHWC   KYLQGKRG  KPPF+LP+FI +TGI EMR+   +KE +K++K+KM++K+RPK+G +DI Y+KL++AFF  QTKP+LT  GD+YY+GKE E R KE +PG LSDELR++LGM  GPNA K PPPWLIA QRYGPPPSYPNLKIPGLN  IP  CSFG+HAGGWGKPPVD+ GKPLYGDVF    N A      + +E D   WG
Sbjct:  431 KLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGT--NAAEFQTKTEEEEIDRTPWG 692
[Close]
BLAST of Splicing factor 3B subunit 2 vs. UniProt/SwissProt
Match: sp|Q13435|SF3B2_HUMAN (Splicing factor 3B subunit 2 OS=Homo sapiens OX=9606 GN=SF3B2 PE=1 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 3.000e-110
Identity = 160/264 (60.61%), Postives = 202/264 (76.52%), Query Frame = 3 
Query:  345 KMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWG 1136
            K+SKK+ +++NR ++ +LK  V +PD+VE  D  ++DP  L+ LK+ RN+VPVPRHWC   KYLQGKRG  KPPF+LP+FI +TGI EMR+   +KE +K++K+KM++K+RPK+G +DI Y+KL++AFF  QTKP+LT  GD+YY+GKE E R KE +PG LSDELR++LGM  GPNA K PPPWLIA QRYGPPPSYPNLKIPGLN  IP  CSFG+HAGGWGKPPVD+ GKPLYGDVF    N A      + +E D   WG
Sbjct:  448 KLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGT--NAAEFQTKTEEEEIDRTPWG 709
[Close]
BLAST of Splicing factor 3B subunit 2 vs. UniProt/SwissProt
Match: sp|Q9UUI3|SA145_SCHPO (Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap145 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.088e-81
Identity = 125/231 (54.11%), Postives = 163/231 (70.56%), Query Frame = 3 
Query:  381 ISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANA 1073
            +++  LK+  +K D+VE WD  S DP+FL  LK+  NTVPVPRHW     YL G+RG  +  F+LP +I  TGI++MR    + E++  L+ KM+++++PK+G +DI Y+KL++AFF  QTKP LT FG+ Y++GKELE   KE RPG +S+ELR ALG+  G      PPPWL A QRYGPPPSYP+LKIPG+N  IP G  +GFH GGWGKPPVD   +PLYGDVF N 
Sbjct:  187 MTVAQLKMLSEKADVVEWWDVSSLDPLFLTHLKAYPNTVPVPRHWNQKRDYLSGQRGIERQLFELPSYIRATGIVQMRNAVHENEADMPLRQKMRERVQPKMGKLDIDYQKLHDAFFRYQTKPVLTGFGECYFEGKELEADVKEKRPGDISEELREALGIAPG-----APPPWLFAMQRYGPPPSYPDLKIPGVNCPIPTGAQWGFHPGGWGKPPVDQFNRPLYGDVFGNV 412
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BLAST of Splicing factor 3B subunit 2 vs. UniProt/SwissProt
Match: sp|Q02554|CUS1_YEAST (Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CUS1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.616e-34
Identity = 84/242 (34.71%), Postives = 131/242 (54.13%), Query Frame = 3 
Query:  300 ILESNHV-KDELDDG------GKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMR----QTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFV--EQTKPE-LTKFGDIYYQGKEL------EGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLN 965
            ++   H  +DEL+D         +S ++ +K  + S+  LK +V  P ++E +D  +R P  L  +K  +N +PVP HW +  +YL G+    K PF+LP+ I KT I +MR    Q+  D + EKSLK   + +++PK+G +D+ Y+KL++ FF      KP+ L  FGD+YY+ + L      +      RPG +S ELR  + +  G       PPW +  +  G P  YP+LKI GLN
Sbjct:   98 VMNRKHTAEDELEDTPSDGIEEHLSARKRRKTEKPSLSQLKSQVPYPQIIEWYDCDARYPGLLASIKCTKNVIPVPSHWQSKKEYLSGRSLLGKRPFELPDIIKKTNIEQMRSTLPQSGLDGQDEKSLKEASRARVQPKMGALDLDYKKLHDVFFKIGANWKPDHLLCFGDVYYENRNLFEETNWKRMVDHKRPGRISQELRAIMNLPEG-----QLPPWCMKMKDIGLPTGYPDLKIAGLN 334
[Close]
BLAST of Splicing factor 3B subunit 2 vs. TrEMBL
Match: A0A448WG95 (PSP domain-containing protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS4480 PE=4 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 1.231e-117
Identity = 166/248 (66.94%), Postives = 203/248 (81.85%), Query Frame = 3 
Query:  348 MSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPV 1091
            +SKK+ K LNR S+  LK  V +PD+VE WD C+RDP+ L+ LKS RNTVPVPRHWCA  KYLQGKRGF KPPF+LP+FI++TGIMEMRQT  DK+SEK+LK+KM++KIRPKVG VDI Y KL++AFF  QTKP++T+ GD+YY+GKE E + KE +PG+LS+EL+ ALG+  G  +E+ PPPWLIA QRYGPPPSYPNLKIPGLN  IP GC+FG+H GGWGKPPVD+ G+P+YGDVF N  N A V
Sbjct:   65 LSKKKQKLLNRPSVAALKQAVARPDVVEMWDVCARDPLLLVYLKSYRNTVPVPRHWCAKRKYLQGKRGFEKPPFRLPDFIARTGIMEMRQTVQDKDSEKTLKSKMREKIRPKVGKVDIDYHKLHDAFFKYQTKPKMTRHGDLYYEGKEFEVKLKEKKPGVLSEELKTALGLPLGVGSERYPPPWLIAMQRYGPPPSYPNLKIPGLNASIPDGCAFGYHPGGWGKPPVDELGRPIYGDVFGNGGNIAGV 312
[Close]
BLAST of Splicing factor 3B subunit 2 vs. TrEMBL
Match: A0A1S8WW55 (PSP domain-containing protein OS=Opisthorchis viverrini OX=6198 GN=X801_05369 PE=4 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 8.791e-117
Identity = 173/276 (62.68%), Postives = 213/276 (77.17%), Query Frame = 3 
Query:  264 NEDLPRKAIAAAILESNHVKDELDDGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPV 1091
            ++D  R A A +  +   VK E      +SKK+ K+LNR S+  LK  V +PD+VE WD C+RDP+ L+ LK+ RNTVPVPRHWCA  KYLQGKRGF KPPF+LP+FI++TGIMEMRQT  DK+SEK+LK KM++KIRPKVG VDI Y KL++AFF  QTKP+++  GD+YY+GKE E + KE +PG LS+ELR ALG+ +G  AE+ PPPWLIA QRYGPPPSYPNLKIPGLN  IP GC+FG+H GGWGKPPVD+ G+P+YGDVF N  N A V
Sbjct:  157 DDDSGRPARAKSSSDDGAVKPESGGTEVLSKKKLKRLNRPSVASLKQMVTRPDVVEMWDVCARDPLLLVHLKAYRNTVPVPRHWCAKRKYLQGKRGFEKPPFRLPDFIARTGIMEMRQTVQDKDSEKTLKTKMREKIRPKVGKVDIDYHKLHDAFFKYQTKPKMSIHGDLYYEGKEFEVKLKEKKPGNLSEELRAALGLPSGTGAERYPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPDGCAFGYHPGGWGKPPVDELGRPVYGDVFGNGGNIAGV 432
[Close]
BLAST of Splicing factor 3B subunit 2 vs. TrEMBL
Match: A0A183B316 (PSP domain-containing protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS13601 PE=4 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 1.703e-116
Identity = 169/264 (64.02%), Postives = 208/264 (78.79%), Query Frame = 3 
Query:  303 LESNHVKDELDDGGK-MSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPV 1091
             +S H K E  +  + +SKK+ K+LNR ++  LK  V +PD++E WD C+RDP+ L  LK+ RNTVPVPRHWCA  KYLQGKRGF KPPFKLPE+I++TGIMEMRQT  DK+++K+LK KM++KIRPKVG VDI Y KL++AFF  QTKP+L+  GD+YY+GKE E + KE +PG LSDELR ALG+ +G  AE+ PPPWLIA QRYGPPPSYPNLKIPGLN  IP GC+FG+H GGWGKPPVD+ G+PLYGDVF N  N A +
Sbjct:   80 FQSGHGKGEAPENTEVLSKKKLKRLNRPTVAALKQMVSRPDVIEMWDVCARDPLLLAHLKAYRNTVPVPRHWCAKRKYLQGKRGFEKPPFKLPEYIARTGIMEMRQTVQDKDADKTLKTKMREKIRPKVGKVDIDYHKLHDAFFKYQTKPKLSIHGDLYYEGKEFEIKLKEKKPGNLSDELRAALGLPSGAGAERYPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPDGCAFGYHPGGWGKPPVDELGRPLYGDVFGNGGNIAGI 343
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BLAST of Splicing factor 3B subunit 2 vs. TrEMBL
Match: H2KUV3 (Splicing factor 3B subunit 2 OS=Clonorchis sinensis OX=79923 GN=CLF_110448 PE=4 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 2.235e-116
Identity = 172/276 (62.32%), Postives = 212/276 (76.81%), Query Frame = 3 
Query:  264 NEDLPRKAIAAAILESNHVKDELDDGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPV 1091
            ++D  R A   +  +   VK E      +SKK+ K+LNR S+  LK  V +PD+VE WD C+RDP+ L+ LK+ RNTVPVPRHWCA  KYLQGKRGF KPPF+LP+FI++TGIMEMRQT  DK+SEK+LK KM++KIRPKVG VDI Y KL++AFF  QTKP+++  GD+YY+GKE E + KE +PG LS+ELR ALG+ +G  AE+ PPPWLIA QRYGPPPSYPNLKIPGLN  IP GC+FG+H GGWGKPPVD+ G+P+YGDVF N  N A V
Sbjct:   93 DDDSGRPARVKSGSDDTAVKPEPGGTEVLSKKKLKRLNRPSVASLKQMVTRPDVVEMWDVCARDPLLLVHLKAYRNTVPVPRHWCAKRKYLQGKRGFEKPPFRLPDFIARTGIMEMRQTVQDKDSEKTLKTKMREKIRPKVGKVDIDYHKLHDAFFKYQTKPKMSIHGDLYYEGKEFEVKLKEKKPGNLSEELRAALGLPSGTGAERYPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPDGCAFGYHPGGWGKPPVDELGRPVYGDVFGNGGNIAGV 368
[Close]
BLAST of Splicing factor 3B subunit 2 vs. TrEMBL
Match: A0A0R3UQ64 (PSP domain-containing protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS10014 PE=4 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 4.244e-116
Identity = 168/248 (67.74%), Postives = 201/248 (81.05%), Query Frame = 3 
Query:  348 MSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPV 1091
            MSKK+ K LNR S+  LK    +PD+VE WD C++DP+ L+ LKS RNTVPVP+HWCA  KYLQGKRGF KPPF+LPEFI++TGIMEMRQT  DK++EKSLK KM++KIRPK+G VDI Y KL++AFF  QTKP+LT  GD+YY+GKE E + KE +PG LSDELR ALG+ TGPNA++ PPPWLIA QRYGPPPSYPN+ IPGLN  IP GC+FG+H GGWGKPPVD+ G+P+YGDVF N  N A V
Sbjct:  174 MSKKKLKLLNRPSVASLKQAAARPDVVEMWDVCAKDPLLLVYLKSYRNTVPVPKHWCAKRKYLQGKRGFEKPPFRLPEFIARTGIMEMRQTVTDKDAEKSLKTKMREKIRPKIGKVDIDYRKLHDAFFKYQTKPKLTGHGDLYYEGKEFEVKLKEKKPGNLSDELRTALGLPTGPNADRYPPPWLIAMQRYGPPPSYPNVVIPGLNAPIPSGCAFGYHPGGWGKPPVDELGRPIYGDVFGNGGNMAGV 421
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BLAST of Splicing factor 3B subunit 2 vs. Ensembl Cavefish
Match: sf3b2 (splicing factor 3b subunit 2 [Source:NCBI gene;Acc:103042319])

HSP 1 Score: 349.362 bits (895), Expect = 2.699e-112
Identity = 161/267 (60.30%), Postives = 201/267 (75.28%), Query Frame = 3 
Query:  336 DGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWG 1136
            D  K+SKK+ +++NR+++ +LK  V +PD+VE  D  +++P  L+ LK+ RNTVPVPRHWC   KYLQGKRG  KPPF+LPEFI +TGI EMR+   +KE  K++K KM++K+RPK+G +DI Y+KL++AFF  Q KP+LT  GD+YY+GKE E R KE +PG LSDELR+ALGM TGPN+ K PPPWLIA QRYGPPPSYPNLKIPGLN  IP  CSFG+HAGGWGKPPVD+ GKPLYGDVF    N        + +E D   WG
Sbjct:  255 DAPKLSKKKLRRMNRLTVAELKQLVARPDVVEMHDVTAQEPKLLVHLKATRNTVPVPRHWCFKRKYLQGKRGIEKPPFELPEFIKRTGIQEMREALQEKEDAKTMKTKMREKVRPKMGKIDIDYQKLHDAFFKWQIKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRIALGMPTGPNSHKVPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPENCSFGYHAGGWGKPPVDETGKPLYGDVFGT--NAVDFQAKAEEEEVDRTPWG 519
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Cavefish
Match: sf3b2 (splicing factor 3b subunit 2 [Source:NCBI gene;Acc:103042319])

HSP 1 Score: 348.977 bits (894), Expect = 2.928e-110
Identity = 161/267 (60.30%), Postives = 201/267 (75.28%), Query Frame = 3 
Query:  336 DGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWG 1136
            D  K+SKK+ +++NR+++ +LK  V +PD+VE  D  +++P  L+ LK+ RNTVPVPRHWC   KYLQGKRG  KPPF+LPEFI +TGI EMR+   +KE  K++K KM++K+RPK+G +DI Y+KL++AFF  Q KP+LT  GD+YY+GKE E R KE +PG LSDELR+ALGM TGPN+ K PPPWLIA QRYGPPPSYPNLKIPGLN  IP  CSFG+HAGGWGKPPVD+ GKPLYGDVF    N        + +E D   WG
Sbjct:  430 DAPKLSKKKLRRMNRLTVAELKQLVARPDVVEMHDVTAQEPKLLVHLKATRNTVPVPRHWCFKRKYLQGKRGIEKPPFELPEFIKRTGIQEMREALQEKEDAKTMKTKMREKVRPKMGKIDIDYQKLHDAFFKWQIKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRIALGMPTGPNSHKVPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPENCSFGYHAGGWGKPPVDETGKPLYGDVFGT--NAVDFQAKAEEEEVDRTPWG 694
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Sea Lamprey
Match: sf3b2 (splicing factor 3b, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-070928-1])

HSP 1 Score: 159.073 bits (401), Expect = 7.827e-45
Identity = 72/96 (75.00%), Postives = 79/96 (82.29%), Query Frame = 3 
Query:  780 QGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFA 1067
            QGKE E R KE +PG LSD+LR+ALGM  G N  K PPPWLIA QRYGPPPSYPNLKIPGLN  IP GC+FG+HAGGWGKPPVD+ G+PLYGDVF 
Sbjct:    1 QGKEFETRLKEKKPGDLSDDLRIALGMPIGLNCAKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPEGCTFGYHAGGWGKPPVDEMGRPLYGDVFG 96
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Sea Lamprey
Match: SF3B2 (splicing factor 3b subunit 2 [Source:HGNC Symbol;Acc:HGNC:10769])

HSP 1 Score: 127.487 bits (319), Expect = 6.287e-32
Identity = 57/100 (57.00%), Postives = 76/100 (76.00%), Query Frame = 3 
Query:  345 KMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEK 644
            K+SKK+ +++NR+++ +LK  V +PD+VE  D  +RDP  L++LKS RNTVPVPRHWC   KYLQGKRG  KPPF LP+FI +TGIMEMRQ   +K  ++
Sbjct:  406 KLSKKKLRRMNRLTVAELKQLVMRPDVVEMHDVTARDPKLLVQLKSTRNTVPVPRHWCFKRKYLQGKRGIEKPPFDLPDFIKRTGIMEMRQALQEKVRQR 505
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Yeast
Match: CUS1 (Protein required for assembly of U2 snRNP into the spliceosome; forms a complex with Hsh49p and Hsh155p [Source:SGD;Acc:S000004853])

HSP 1 Score: 136.346 bits (342), Expect = 1.385e-35
Identity = 84/242 (34.71%), Postives = 131/242 (54.13%), Query Frame = 3 
Query:  300 ILESNHV-KDELDDG------GKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMR----QTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFV--EQTKPE-LTKFGDIYYQGKEL------EGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLN 965
            ++   H  +DEL+D         +S ++ +K  + S+  LK +V  P ++E +D  +R P  L  +K  +N +PVP HW +  +YL G+    K PF+LP+ I KT I +MR    Q+  D + EKSLK   + +++PK+G +D+ Y+KL++ FF      KP+ L  FGD+YY+ + L      +      RPG +S ELR  + +  G       PPW +  +  G P  YP+LKI GLN
Sbjct:   98 VMNRKHTAEDELEDTPSDGIEEHLSARKRRKTEKPSLSQLKSQVPYPQIIEWYDCDARYPGLLASIKCTKNVIPVPSHWQSKKEYLSGRSLLGKRPFELPDIIKKTNIEQMRSTLPQSGLDGQDEKSLKEASRARVQPKMGALDLDYKKLHDVFFKIGANWKPDHLLCFGDVYYENRNLFEETNWKRMVDHKRPGRISQELRAIMNLPEG-----QLPPWCMKMKDIGLPTGYPDLKIAGLN 334
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Nematostella
Match: EDO40194 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S7W8])

HSP 1 Score: 331.643 bits (849), Expect = 3.161e-108
Identity = 160/267 (59.93%), Postives = 199/267 (74.53%), Query Frame = 3 
Query:  318 VKDELDDGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADED 1118
            VK    D  K+SKK+ +K+NR+S+ +LK  V +PD+VE  D  + DP  L+ LKS RNTVPVPRHWC   KYLQGKRG VKP F LPEFI KTGIMEMR+   +KE +K+LK KM++K+RPK+G ++I Y+KL++AFF  QTKP+++  GD+YY+GKE E + KE +PG LSD+L+ ALGM TG  +   PPPWLIA QRYGPPPSYPNLKI GLN  IP G SFG+HAGGWGKPPVD+ G+PLYGDVF         +  LDA+ED
Sbjct:   57 VKPPESDQPKLSKKKLRKMNRLSVAELKQLVPRPDVVEMHDVTAHDPKLLVFLKSCRNTVPVPRHWCFKRKYLQGKRGIVKPAFDLPEFIKKTGIMEMREAMQEKEEQKTLKAKMREKVRPKMGKINIDYQKLHDAFFRWQTKPKMSIHGDLYYEGKEFETKLKEKKPGDLSDDLKTALGMPTGQGSHLVPPPWLIAMQRYGPPPSYPNLKIAGLNAPIPEGASFGYHAGGWGKPPVDETGRPLYGDVFG--------VQSLDANED 315
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Medaka
Match: sf3b2 (splicing factor 3b subunit 2 [Source:NCBI gene;Acc:101159948])

HSP 1 Score: 348.591 bits (893), Expect = 2.418e-110
Identity = 161/267 (60.30%), Postives = 202/267 (75.66%), Query Frame = 3 
Query:  336 DGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWG 1136
            D  K+SKK+ +++NR+++ +LK  V +PD+VE  D  +++P  L+ LK+ RNTVPVPRHWC   KYLQGKRG  KPPF+LPEFI +TGI EMR+   +KE  K++K KM++K+RPK+G +DI Y+KL++AFF  Q KP+LT  GD+YY+GKE E R KE +PG LSDELR+ALGM  GPNA K PPPWLIA QRYGPPPSYPNLKIPGLN  IP  C+FG+HAGGWGKPPVD+ GKPLYGDVF    N+A      + +E D   WG
Sbjct:  415 DVPKLSKKKLRRMNRLTVAELKQLVARPDVVEMHDVTAQEPKLLVHLKATRNTVPVPRHWCFKRKYLQGKRGIEKPPFELPEFIRRTGIQEMREALQEKEDAKTMKTKMREKVRPKMGKIDIDYQKLHDAFFKWQIKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRIALGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPENCTFGYHAGGWGKPPVDEMGKPLYGDVFGT--NSADFQAKAEEEEVDHTPWG 679
[Close]
BLAST of Splicing factor 3B subunit 2 vs. Planmine SMEST
Match: SMESG000041240.1 (SMESG000041240.1)

HSP 1 Score: 795.423 bits (2053), Expect = 0.000e+0
Identity = 492/492 (100.00%), Postives = 492/492 (100.00%), Query Frame = 3 
Query:   21 MSLIQNNTSXXXXXXXXXXXXXXXXXXXAVKEDFTEQTEVVIYESNLDNIEEFQLTGGFERFNLFYXXXXXXXXXXXXXXFNEDLPRKAIAAAILESNHVKDELDDGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWGXXXXXXXXXXXXXXXXXXXXXXXXASESEDLAXXXXXXXXXXXXXFNQGFVPAMNIELRXXXXXXXXXXXXXXXXXQLFKIIPEVKSNIGSNIMGSDKVYSLSSSEKNMQLQKRKNDNSD 1496
            MSLIQNNTSKCNKNLRKKIRKKLNKCKKAVKEDFTEQTEVVIYESNLDNIEEFQLTGGFERFNLFYEDKKKENDANEKVKFNEDLPRKAIAAAILESNHVKDELDDGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWGEVESNGEDSEIEEEESDVKEEENSASESEDLAPSTSSTVPSGSTTFNQGFVPAMNIELRKKIKEEEVVEKIDKTDKQLFKIIPEVKSNIGSNIMGSDKVYSLSSSEKNMQLQKRKNDNSD
Sbjct:    1 MSLIQNNTSKCNKNLRKKIRKKLNKCKKAVKEDFTEQTEVVIYESNLDNIEEFQLTGGFERFNLFYEDKKKENDANEKVKFNEDLPRKAIAAAILESNHVKDELDDGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFANAFNTAPVLIDLDADEDDEKYWGEVESNGEDSEIEEEESDVKEEENSASESEDLAPSTSSTVPSGSTTFNQGFVPAMNIELRKKIKEEEVVEKIDKTDKQLFKIIPEVKSNIGSNIMGSDKVYSLSSSEKNMQLQKRKNDNSD 492
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BLAST of Splicing factor 3B subunit 2 vs. Planmine SMEST
Match: SMESG000058116.1 (SMESG000058116.1)

HSP 1 Score: 417.542 bits (1072), Expect = 4.171e-141
Identity = 249/468 (53.21%), Postives = 319/468 (68.16%), Query Frame = 3 
Query:  108 VKEDFTEQTEVVIYESNLDNIEEFQLTGGFERFNLF--------YXXXXXXXXXXXXXXFNEDLPRKAIAAAILESNHVKDELDDGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLLELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQTADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGDIYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRYGPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFA-NAFNTAPVLIDLDADEDDEKYWGXXXXXXXXXXXXXXXXXXXXXXXXASESED--LAXXXXXXXXXXXXXFNQGFVPAMNIELRXXXXXXXXXXXXXXXXXQLFKIIPEVKSNIGSNIMGSDKVYSLSSSEKNMQLQKR 1478
            +K++  E  E++ Y + LDNI EF+L G FERF  +          D  K    +     NE LP KA AAAIL+ +H +DE ++  K+ KK+ K++NR++   LKI V +P+LVE WD CS+DPI LLELKS RNTVPVPRHWCA  KYLQGKRGF K PFKLP+FI+KTGIMEMRQT  DKE +K+LK KM++KIRPKVG VDI Y KL++AFF +Q KP LT  GDIYY+GKE E + KE +PG LSDELR ALG+ TGPNA+K PPPWLIA QRYGPPPSYPNLKIPGLN  IP GCSFG+HA GWGKPPVD+ G+P+YG+VF  N     P   D    E+  K+WGE+ES+ E  E +E E + ++E+       +    P+     PSG ++  QG     +IELRKK  E++++         LF +IP++K+ IGS IMGS+K+Y +   E +M+ +KR
Sbjct:   35 IKQEHVE-IELIEYPTTLDNIVEFELKGKFERFINYDKEDLKSESRDDTKNAKVSNAQSLNE-LPMKARAAAILQDDHDRDE-NEEPKIGKKQLKRMNRMTTAQLKINVDQPELVETWDYCSKDPILLLELKSMRNTVPVPRHWCAKRKYLQGKRGFEKSPFKLPDFIAKTGIMEMRQTVQDKEGDKTLKTKMREKIRPKVGHVDIDYNKLHDAFFKDQVKPPLTIHGDIYYEGKEFEVKLKEKKPGQLSDELRTALGLPTGPNADKYPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPYGCSFGYHANGWGKPPVDETGRPIYGEVFLDNLPIPPPPSDDDMDGEEGNKFWGEIESDEESEEEDESEKEEEDEDVDMETENEGLFTPAEGLVTPSGVSSVGQGLTTPQSIELRKKAVEDDLMPNEKP----LFTVIPQIKAEIGSAIMGSEKLYQV--PEMDMKNKKR 493
The following BLAST results are available for this feature:
BLAST of Splicing factor 3B subunit 2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
SF3B24.166e-11160.61splicing factor 3b subunit 2 [Source:HGNC Symbol;A... [more]
SF3B26.247e-11160.61splicing factor 3b subunit 2 [Source:HGNC Symbol;A... [more]
SF3B22.662e-5467.18splicing factor 3b subunit 2 [Source:HGNC Symbol;A... [more]
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BLAST of Splicing factor 3B subunit 2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
sftb-21.047e-10056.06Splicing Factor ThreeB (3b) Subunit homolog [Sour... [more]
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BLAST of Splicing factor 3B subunit 2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Sf3b27.098e-10952.45gene:FBgn0031493 transcript:FBtr0335484[more]
Sf3b27.098e-10952.45gene:FBgn0031493 transcript:FBtr0077669[more]
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BLAST of Splicing factor 3B subunit 2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
sf3b22.093e-11061.36splicing factor 3b, subunit 2 [Source:ZFIN;Acc:ZDB... [more]
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BLAST of Splicing factor 3B subunit 2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
stt3b5.508e-11063.27STT3B, catalytic subunit of the oligosaccharyltran... [more]
stt3b6.890e-11063.27STT3B, catalytic subunit of the oligosaccharyltran... [more]
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BLAST of Splicing factor 3B subunit 2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Sf3b23.496e-11160.61splicing factor 3b, subunit 2 [Source:MGI Symbol;A... [more]
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BLAST of Splicing factor 3B subunit 2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q13435|SF3B2_HUMAN3.000e-11060.61Splicing factor 3B subunit 2 OS=Homo sapiens OX=96... [more]
sp|Q9UUI3|SA145_SCHPO2.088e-8154.11Pre-mRNA-splicing factor sap145 OS=Schizosaccharom... [more]
sp|Q02554|CUS1_YEAST9.616e-3434.71Cold sensitive U2 snRNA suppressor 1 OS=Saccharomy... [more]
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BLAST of Splicing factor 3B subunit 2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A448WG951.231e-11766.94PSP domain-containing protein OS=Protopolystoma xe... [more]
A0A1S8WW558.791e-11762.68PSP domain-containing protein OS=Opisthorchis vive... [more]
A0A183B3161.703e-11664.02PSP domain-containing protein OS=Echinostoma capro... [more]
H2KUV32.235e-11662.32Splicing factor 3B subunit 2 OS=Clonorchis sinensi... [more]
A0A0R3UQ644.244e-11667.74PSP domain-containing protein OS=Mesocestoides cor... [more]
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BLAST of Splicing factor 3B subunit 2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
sf3b22.699e-11260.30splicing factor 3b subunit 2 [Source:NCBI gene;Acc... [more]
sf3b22.928e-11060.30splicing factor 3b subunit 2 [Source:NCBI gene;Acc... [more]
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BLAST of Splicing factor 3B subunit 2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
sf3b27.827e-4575.00splicing factor 3b, subunit 2 [Source:ZFIN;Acc:ZDB... [more]
SF3B26.287e-3257.00splicing factor 3b subunit 2 [Source:HGNC Symbol;A... [more]
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BLAST of Splicing factor 3B subunit 2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
CUS11.385e-3534.71Protein required for assembly of U2 snRNP into the... [more]
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BLAST of Splicing factor 3B subunit 2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO401943.161e-10859.93Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Splicing factor 3B subunit 2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
sf3b22.418e-11060.30splicing factor 3b subunit 2 [Source:NCBI gene;Acc... [more]
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BLAST of Splicing factor 3B subunit 2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000041240.10.000e+0100.00SMESG000041240.1[more]
SMESG000058116.14.171e-14153.21SMESG000058116.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021079 ID=SMED30021079|Name=Splicing factor 3B subunit 2|organism=Schmidtea mediterranea sexual|type=transcript|length=1569bp
AGATTTGAATTAATTAAAATATGTCTTTAATTCAAAATAATACTTCTAAA
TGTAATAAAAATTTGAGAAAAAAGATTCGCAAGAAGCTAAATAAGTGTAA
AAAAGCCGTCAAAGAAGATTTCACAGAACAAACTGAAGTGGTTATATATG
AATCTAATTTAGATAACATTGAAGAATTTCAATTAACTGGTGGATTTGAG
AGATTCAACTTATTTTATGAGGATAAGAAAAAAGAAAATGACGCTAATGA
GAAGGTTAAATTTAACGAAGATTTACCTCGTAAAGCCATTGCTGCGGCTA
TTTTGGAAAGTAATCATGTAAAAGATGAATTAGATGATGGTGGCAAAATG
TCTAAAAAACGATGGAAAAAGCTGAATAGAATTTCAATTGGTGATCTAAA
AATTCGTGTTAAAAAGCCTGATTTAGTAGAGCCTTGGGATAATTGTAGTC
GCGATCCTATTTTCCTGCTCGAATTGAAATCAAAAAGAAATACAGTTCCT
GTCCCTCGTCATTGGTGTGCTACTGGAAAATACCTGCAAGGAAAGCGTGG
ATTTGTGAAACCACCTTTTAAATTGCCAGAGTTTATTTCAAAAACTGGAA
TTATGGAAATGCGTCAAACTGCAGATGATAAAGAATCAGAAAAGTCATTA
AAGAATAAAATGAAAGACAAAATTCGACCAAAAGTTGGATTAGTTGACAT
TAGTTATGAAAAGCTATATAATGCCTTTTTTGTTGAACAAACTAAACCAG
AATTAACAAAATTTGGTGATATTTATTATCAAGGCAAGGAATTGGAAGGA
AGGCGAAAAGAAAATCGTCCGGGTATTCTATCCGATGAACTTAGAGTAGC
CTTAGGCATGACTACTGGACCGAATGCTGAAAAAACTCCACCACCATGGT
TGATAGCACAACAGCGTTATGGGCCTCCTCCGTCTTATCCCAATTTAAAA
ATCCCTGGACTTAATAAAGGAATTCCTCCTGGATGCTCTTTTGGATTCCA
TGCTGGCGGGTGGGGAAAACCGCCAGTTGATGATGATGGTAAACCGCTGT
ACGGTGATGTGTTTGCAAACGCATTCAATACCGCGCCGGTTCTCATTGAT
CTTGATGCTGATGAAGACGACGAAAAATATTGGGGAGAAGTCGAATCAAA
TGGTGAAGATTCTGAAATTGAGGAGGAAGAATCCGATGTGAAAGAAGAGG
AAAATAGTGCTAGTGAGAGTGAAGATTTAGCTCCGAGTACAAGTTCCACA
GTTCCAAGCGGTTCAACGACTTTCAATCAAGGTTTTGTACCGGCTATGAA
TATTGAATTGAGGAAGAAAATCAAAGAAGAGGAAGTTGTCGAGAAAATCG
ATAAGACTGATAAACAACTCTTTAAAATAATTCCTGAAGTGAAATCCAAT
ATCGGATCGAATATAATGGGATCGGATAAAGTTTATTCTCTGTCGAGTTC
AGAGAAAAATATGCAGTTACAGAAACGGAAAAATGATAATTCAGATAAAG
AGCAACAGCCGAAACCAAAAAAAGAAAAGTTCAAGTTTTAATTACTCAGA
AAATATTTTTAAAATGTTG
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protein sequence of SMED30021079-orf-1

>SMED30021079-orf-1 ID=SMED30021079-orf-1|Name=SMED30021079-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=507bp
MSLIQNNTSKCNKNLRKKIRKKLNKCKKAVKEDFTEQTEVVIYESNLDNI
EEFQLTGGFERFNLFYEDKKKENDANEKVKFNEDLPRKAIAAAILESNHV
KDELDDGGKMSKKRWKKLNRISIGDLKIRVKKPDLVEPWDNCSRDPIFLL
ELKSKRNTVPVPRHWCATGKYLQGKRGFVKPPFKLPEFISKTGIMEMRQT
ADDKESEKSLKNKMKDKIRPKVGLVDISYEKLYNAFFVEQTKPELTKFGD
IYYQGKELEGRRKENRPGILSDELRVALGMTTGPNAEKTPPPWLIAQQRY
GPPPSYPNLKIPGLNKGIPPGCSFGFHAGGWGKPPVDDDGKPLYGDVFAN
AFNTAPVLIDLDADEDDEKYWGEVESNGEDSEIEEEESDVKEEENSASES
EDLAPSTSSTVPSGSTTFNQGFVPAMNIELRKKIKEEEVVEKIDKTDKQL
FKIIPEVKSNIGSNIMGSDKVYSLSSSEKNMQLQKRKNDNSDKEQQPKPK
KEKFKF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR006568PSP_pro-rich
IPR007180DUF382
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 383..403
NoneNo IPR availableCOILSCoilCoilcoord: 12..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 482..506
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 472..506
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 373..422
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 373..396
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 400..422
NoneNo IPR availablePANTHERPTHR12785:SF6SPLICING FACTOR 3B SUBUNIT 2coord: 12..492
NoneNo IPR availablePANTHERPTHR12785splicing factor 3Bcoord: 12..492
IPR006568PSP, proline-richSMARTSM00581testneucoord: 262..320
e-value: 3.7E-26
score: 102.9
IPR006568PSP, proline-richPFAMPF04046PSPcoord: 266..315
e-value: 1.6E-18
score: 66.3
IPR007180Domain of unknown function DUF382PFAMPF04037DUF382coord: 131..257
e-value: 1.1E-49
score: 167.8