Actin

Overview


Name	Actin
Smed ID	SMED30021075
Length (bp)	470

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Actin (SMED30021075) t-SNE clustered cells

Violin plots show distribution of expression levels for Actin (SMED30021075) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Actin (SMED30021075) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Actin (SMED30021075) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30021075

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 7

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30021075	h1SMcG0011960	dd_Smed_v4_8076_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30021075	h1SMcG0011960	dd_Smed_v4_8076_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30021075	h1SMcG0011960	dd_Smed_v4_8076_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30021075	h1SMcG0011960	dd_Smed_v4_8076_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30021075	h1SMcG0011960	dd_Smed_v4_14777_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
head region	SMED30021075	h1SMcG0011960	dd_Smed_v6_8076_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
epidermis	SMED30021075	h1SMcG0011960	dd_Smed_v4_8076_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of Actin vs. Ensembl Human
Match: ACTB (actin beta [Source:HGNC Symbol;Acc:HGNC:132])

HSP 1 Score: 71.633 bits (174), Expect = 7.761e-16
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Human
Match: ACTB (actin beta [Source:HGNC Symbol;Acc:HGNC:132])

HSP 1 Score: 71.633 bits (174), Expect = 8.094e-16
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Human
Match: ACTG1 (actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144])

HSP 1 Score: 71.633 bits (174), Expect = 9.696e-16
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Human
Match: ACTG1 (actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144])

HSP 1 Score: 70.8626 bits (172), Expect = 4.209e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Celegans
Match: act-4 (Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986])

HSP 1 Score: 70.8626 bits (172), Expect = 5.958e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   71 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 113

[Close]

BLAST of Actin vs. Ensembl Celegans
Match: act-4 (Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986])

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Ensembl Celegans
Match: act-3 (Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0DM42])

HSP 1 Score: 70.8626 bits (172), Expect = 6.259e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Ensembl Fly
Match: Act42A (gene:FBgn0000043 transcript:FBtr0086029)

HSP 1 Score: 70.8626 bits (172), Expect = 8.260e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Ensembl Fly
Match: Act88F (gene:FBgn0000047 transcript:FBtr0083143)

HSP 1 Score: 70.8626 bits (172), Expect = 8.424e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Ensembl Fly
Match: Act5C (gene:FBgn0000042 transcript:FBtr0070822)

HSP 1 Score: 70.8626 bits (172), Expect = 8.934e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Ensembl Fly
Match: Act5C (gene:FBgn0000042 transcript:FBtr0100662)

HSP 1 Score: 70.8626 bits (172), Expect = 8.934e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Ensembl Fly
Match: Act5C (gene:FBgn0000042 transcript:FBtr0345894)

HSP 1 Score: 70.8626 bits (172), Expect = 8.934e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Ensembl Zebrafish
Match: actb1 (actin, beta 1 [Source:NCBI gene;Acc:57934])

HSP 1 Score: 70.8626 bits (172), Expect = 3.320e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Zebrafish
Match: actb1 (actin, beta 1 [Source:NCBI gene;Acc:57934])

HSP 1 Score: 70.4774 bits (171), Expect = 9.233e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Zebrafish
Match: actb1 (actin, beta 1 [Source:NCBI gene;Acc:57934])

HSP 1 Score: 70.8626 bits (172), Expect = 1.115e-14
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Zebrafish
Match: actb2 (actin, beta 2 [Source:NCBI gene;Acc:57935])

HSP 1 Score: 70.8626 bits (172), Expect = 1.137e-14
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Xenopus
Match: actb (actin, beta [Source:NCBI gene;Acc:407952])

HSP 1 Score: 70.8626 bits (172), Expect = 1.573e-14
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Xenopus
Match: actg1 (actin gamma 1 [Source:NCBI gene;Acc:394957])

HSP 1 Score: 70.8626 bits (172), Expect = 1.636e-14
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Xenopus
Match: act3 (actin alpha 4 [Source:NCBI gene;Acc:394673])

HSP 1 Score: 69.707 bits (169), Expect = 4.669e-14
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH  LLTEA LN KANREK+TQIMF T
Sbjct:   99 KIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 141

[Close]

BLAST of Actin vs. Ensembl Xenopus
Match: act3 (actin alpha 4 [Source:NCBI gene;Acc:394673])

HSP 1 Score: 69.3218 bits (168), Expect = 5.543e-14
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH  LLTEA LN KANREK+TQIMF T
Sbjct:   86 KIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 128

[Close]

BLAST of Actin vs. Ensembl Xenopus
Match: acta1 (actin, alpha 1, skeletal muscle [Source:NCBI gene;Acc:448346])

HSP 1 Score: 69.3218 bits (168), Expect = 5.936e-14
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH  LLTEA LN KANREK+TQIMF T
Sbjct:   86 KIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 128

[Close]

BLAST of Actin vs. Ensembl Mouse
Match: Actb (actin, beta [Source:MGI Symbol;Acc:MGI:87904])

HSP 1 Score: 71.2478 bits (173), Expect = 6.088e-16
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   87 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 129

[Close]

BLAST of Actin vs. Ensembl Mouse
Match: Actg1 (actin, gamma, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:87906])

HSP 1 Score: 71.633 bits (174), Expect = 2.665e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:  141 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 183

[Close]

BLAST of Actin vs. Ensembl Mouse
Match: Acta1 (actin, alpha 1, skeletal muscle [Source:MGI Symbol;Acc:MGI:87902])

HSP 1 Score: 69.3218 bits (168), Expect = 2.815e-15
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH  LLTEA LN KANREK+TQIMF T
Sbjct:   86 KIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 128

[Close]

BLAST of Actin vs. Ensembl Mouse
Match: Actb (actin, beta [Source:MGI Symbol;Acc:MGI:87904])

HSP 1 Score: 70.8626 bits (172), Expect = 5.605e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Mouse
Match: Actb (actin, beta [Source:MGI Symbol;Acc:MGI:87904])

HSP 1 Score: 70.8626 bits (172), Expect = 1.215e-14
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. UniProt/SwissProt
Match: sp|Q39596|ACT_OXYRB (Actin (Fragment) OS=Oxybasis rubra OX=3560 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.310e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:    1 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 43

[Close]

BLAST of Actin vs. UniProt/SwissProt
Match: sp|Q96483|ACT2_SOLLC (Actin-51 (Fragment) OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.862e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   66 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 108

HSP 2 Score: 30.0314 bits (66), Expect = 2.862e-15
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 2

Query:  146 VIFGMSQKYIYDENEPECKRGIIRL 220
            V+ GM QK  YD +E + KRGI+ L
Sbjct:   25 VMVGMGQKDAYDGDEAQSKRGILTL 49

HSP 3 Score: 20.0162 bits (40), Expect = 2.862e-15
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 1

Query:  211 YKIG*GIWKNYDDME 255
            Y I  GI  N+DDME
Sbjct:   51 YPIEHGIVSNWDDME 65

[Close]

BLAST of Actin vs. UniProt/SwissProt
Match: sp|Q11212|ACT_SPOLI (Actin (Fragment) OS=Spodoptera littoralis OX=7109 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.416e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   75 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 117

[Close]

BLAST of Actin vs. UniProt/SwissProt
Match: sp|P10982|ACT1_ABSGL (Actin-1 (Fragment) OS=Absidia glauca OX=4829 GN=ACT1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.145e-14
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN K+NREK+TQIMF T
Sbjct:   86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKSNREKMTQIMFET 128

[Close]

BLAST of Actin vs. UniProt/SwissProt
Match: sp|P30170|ACT10_SOLTU (Actin-85C (Fragment) OS=Solanum tuberosum OX=4113 GN=AC85C PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.166e-14
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   66 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 108

[Close]

BLAST of Actin vs. TrEMBL
Match: H8ZWP0 (Actin-2 (Fragment) OS=Collodictyon triciliatum OX=190325 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.120e-13
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:    3 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 45

[Close]

BLAST of Actin vs. TrEMBL
Match: J9E924 (Uncharacterized protein OS=Wuchereria bancrofti OX=6293 GN=WUBG_10480 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.240e-13
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVTCKN 392
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T +N
Sbjct:   41 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETSRN 86

[Close]

BLAST of Actin vs. TrEMBL
Match: A0A0B6YBE1 (Uncharacterized protein (Fragment) OS=Arion vulgaris OX=1028688 GN=ORF20356 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.729e-13
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ YHTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWYHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. TrEMBL
Match: D3UA35 (Putative cytoplasmic actin (Fragment) OS=Hydroides elegans OX=216498 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.736e-13
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   15 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 57

[Close]

BLAST of Actin vs. TrEMBL
Match: B5LBJ0 (Beta-actin (Fragment) OS=Ceratitis capitata OX=7213 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.100e-13
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:    5 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 47

[Close]

BLAST of Actin vs. Ensembl Cavefish
Match: ENSAMXT00000008835.2 (pep primary_assembly:Astyanax_mexicanus-2.0:18:331874:339765:-1 gene:ENSAMXG00000008598.2 transcript:ENSAMXT00000008835.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.8626 bits (172), Expect = 9.109e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 128

[Close]

BLAST of Actin vs. Ensembl Cavefish
Match: actb1 (actin, cytoplasmic 1 [Source:NCBI gene;Acc:103039558])

HSP 1 Score: 70.8626 bits (172), Expect = 9.449e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Cavefish
Match: actb2 (actin beta [Source:NCBI gene;Acc:103030443])

HSP 1 Score: 70.8626 bits (172), Expect = 9.636e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Cavefish
Match: actc1c (actin, alpha cardiac muscle 1 [Source:NCBI gene;Acc:103039206])

HSP 1 Score: 70.4774 bits (171), Expect = 1.080e-14
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 128

[Close]

BLAST of Actin vs. Ensembl Cavefish
Match: actb1 (actin, cytoplasmic 1 [Source:NCBI gene;Acc:103039558])

HSP 1 Score: 70.4774 bits (171), Expect = 1.123e-14
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 128

[Close]

BLAST of Actin vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011113.1 (pep scaffold:Pmarinus_7.0:GL498954:115:1245:1 gene:ENSPMAG00000010086.1 transcript:ENSPMAT00000011113.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.8626 bits (172), Expect = 1.942e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004586.1 (pep scaffold:Pmarinus_7.0:GL479516:23873:27955:-1 gene:ENSPMAG00000004161.1 transcript:ENSPMAT00000004586.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.8626 bits (172), Expect = 2.000e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Ensembl Yeast
Match: ACT1 (Actin; structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions [Source:SGD;Acc:S000001855])

HSP 1 Score: 68.9366 bits (167), Expect = 5.370e-15
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA +N K+NREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Nematostella
Match: EDO27265 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T9Q8])

HSP 1 Score: 69.707 bits (169), Expect = 3.167e-16
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   23 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 65

[Close]

BLAST of Actin vs. Ensembl Nematostella
Match: EDO38006 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEB1])

HSP 1 Score: 71.2478 bits (173), Expect = 2.647e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Nematostella
Match: EDO37976 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEA7])

HSP 1 Score: 71.2478 bits (173), Expect = 2.817e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Ensembl Nematostella
Match: EDO45013 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RU31])

HSP 1 Score: 70.8626 bits (172), Expect = 2.863e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Nematostella
Match: EDO42646 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S0V7])

HSP 1 Score: 70.8626 bits (172), Expect = 2.892e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Medaka
Match: actb (cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:100049433])

HSP 1 Score: 72.0182 bits (175), Expect = 3.850e-15
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELRIAP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Medaka
Match: actb (cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:100049433])

HSP 1 Score: 71.633 bits (174), Expect = 5.529e-15
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELRIAP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Medaka
Match: actb (cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:100049433])

HSP 1 Score: 71.2478 bits (173), Expect = 5.845e-15
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELRIAP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   86 KIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFET 128

[Close]

BLAST of Actin vs. Ensembl Medaka
Match: actb (cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:100049433])

HSP 1 Score: 71.2478 bits (173), Expect = 6.039e-15
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELRIAP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Ensembl Medaka
Match: ENSORLT00000021726.2 (actin, cytoplasmic [Source:NCBI gene;Acc:101155523])

HSP 1 Score: 70.8626 bits (172), Expect = 8.186e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   84 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126

[Close]

BLAST of Actin vs. Planmine SMEST
Match: SMESG000066020.1 (SMESG000066020.1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.834e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Planmine SMEST
Match: SMESG000058003.1 (SMESG000058003.1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.949e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Planmine SMEST
Match: SMESG000057992.1 (SMESG000057992.1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.949e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Planmine SMEST
Match: SMESG000057988.1 (SMESG000057988.1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.949e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

[Close]

BLAST of Actin vs. Planmine SMEST
Match: SMESG000057914.1 (SMESG000057914.1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.949e-15
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 3

Query:  255 KL*YHTFYNELRIAPVEHLILLTEALLNSKANREKITQIMFVT 383
            K+ +HTFYNELR+AP EH +LLTEA LN KANREK+TQIMF T
Sbjct:   85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127

The following BLAST results are available for this feature:

BLAST of Actin vs. Ensembl Human
BLAST of Actin vs. Ensembl Celegans
BLAST of Actin vs. Ensembl Fly
BLAST of Actin vs. Ensembl Zebrafish
BLAST of Actin vs. Ensembl Xenopus
BLAST of Actin vs. Ensembl Mouse
BLAST of Actin vs. UniProt/SwissProt
BLAST of Actin vs. TrEMBL
BLAST of Actin vs. Ensembl Cavefish
BLAST of Actin vs. Ensembl Sea Lamprey
BLAST of Actin vs. Ensembl Yeast
BLAST of Actin vs. Ensembl Nematostella
BLAST of Actin vs. Ensembl Medaka
BLAST of Actin vs. Planmine SMEST

BLAST of Actin vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ACTB	7.761e-16	74.42	actin beta [Source:HGNC Symbol;Acc:HGNC:132]	[more]
ACTB	8.094e-16	74.42	actin beta [Source:HGNC Symbol;Acc:HGNC:132]	[more]
ACTG1	9.696e-16	74.42	actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]	[more]
ACTG1	4.209e-15	74.42	actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]	[more]
ACTG1	4.209e-15	74.42	actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]	[more]

BLAST of Actin vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
act-4	5.958e-15	74.42	Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986]	[more]
act-4	6.137e-15	74.42	Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986]	[more]
act-3	6.259e-15	74.42	Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0DM42]	[more]
act-3	6.259e-15	74.42	Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0DM42]	[more]
act-3	6.259e-15	74.42	Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0DM42]	[more]

BLAST of Actin vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Act42A	8.260e-15	74.42	gene:FBgn0000043 transcript:FBtr0086029	[more]
Act88F	8.424e-15	74.42	gene:FBgn0000047 transcript:FBtr0083143	[more]
Act5C	8.934e-15	74.42	gene:FBgn0000042 transcript:FBtr0070822	[more]
Act5C	8.934e-15	74.42	gene:FBgn0000042 transcript:FBtr0100662	[more]
Act5C	8.934e-15	74.42	gene:FBgn0000042 transcript:FBtr0345894	[more]

BLAST of Actin vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
actb1	3.320e-15	74.42	actin, beta 1 [Source:NCBI gene;Acc:57934]	[more]
actb1	9.233e-15	74.42	actin, beta 1 [Source:NCBI gene;Acc:57934]	[more]
actb1	1.115e-14	74.42	actin, beta 1 [Source:NCBI gene;Acc:57934]	[more]
actb1	1.115e-14	74.42	actin, beta 1 [Source:NCBI gene;Acc:57934]	[more]
actb2	1.137e-14	74.42	actin, beta 2 [Source:NCBI gene;Acc:57935]	[more]

BLAST of Actin vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
actb	1.573e-14	74.42	actin, beta [Source:NCBI gene;Acc:407952]	[more]
actg1	1.636e-14	74.42	actin gamma 1 [Source:NCBI gene;Acc:394957]	[more]
act3	4.669e-14	74.42	actin alpha 4 [Source:NCBI gene;Acc:394673]	[more]
act3	5.543e-14	74.42	actin alpha 4 [Source:NCBI gene;Acc:394673]	[more]
acta1	5.936e-14	74.42	actin, alpha 1, skeletal muscle [Source:NCBI gene;...	[more]

BLAST of Actin vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Actb	6.088e-16	74.42	actin, beta [Source:MGI Symbol;Acc:MGI:87904]	[more]
Actg1	2.665e-15	74.42	actin, gamma, cytoplasmic 1 [Source:MGI Symbol;Acc...	[more]
Acta1	2.815e-15	74.42	actin, alpha 1, skeletal muscle [Source:MGI Symbol...	[more]
Actb	5.605e-15	74.42	actin, beta [Source:MGI Symbol;Acc:MGI:87904]	[more]
Actb	1.215e-14	74.42	actin, beta [Source:MGI Symbol;Acc:MGI:87904]	[more]

BLAST of Actin vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q39596\|ACT_OXYRB	2.310e-15	74.42	Actin (Fragment) OS=Oxybasis rubra OX=3560 PE=3 SV...	[more]
sp\|Q96483\|ACT2_SOLLC	2.862e-15	74.42	Actin-51 (Fragment) OS=Solanum lycopersicum OX=408...	[more]
sp\|Q11212\|ACT_SPOLI	4.416e-15	74.42	Actin (Fragment) OS=Spodoptera littoralis OX=7109 ...	[more]
sp\|P10982\|ACT1_ABSGL	1.145e-14	72.09	Actin-1 (Fragment) OS=Absidia glauca OX=4829 GN=AC...	[more]
sp\|P30170\|ACT10_SOLTU	1.166e-14	74.42	Actin-85C (Fragment) OS=Solanum tuberosum OX=4113 ...	[more]

BLAST of Actin vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
H8ZWP0	1.120e-13	74.42	Actin-2 (Fragment) OS=Collodictyon triciliatum OX=...	[more]
J9E924	1.240e-13	71.74	Uncharacterized protein OS=Wuchereria bancrofti OX...	[more]
A0A0B6YBE1	1.729e-13	76.74	Uncharacterized protein (Fragment) OS=Arion vulgar...	[more]
D3UA35	3.736e-13	74.42	Putative cytoplasmic actin (Fragment) OS=Hydroides...	[more]
B5LBJ0	4.100e-13	74.42	Beta-actin (Fragment) OS=Ceratitis capitata OX=721...	[more]

BLAST of Actin vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000008835.2	9.109e-15	74.42	pep primary_assembly:Astyanax_mexicanus-2.0:18:331...	[more]
actb1	9.449e-15	74.42	actin, cytoplasmic 1 [Source:NCBI gene;Acc:1030395...	[more]
actb2	9.636e-15	74.42	actin beta [Source:NCBI gene;Acc:103030443]	[more]
actc1c	1.080e-14	74.42	actin, alpha cardiac muscle 1 [Source:NCBI gene;Ac...	[more]
actb1	1.123e-14	74.42	actin, cytoplasmic 1 [Source:NCBI gene;Acc:1030395...	[more]

BLAST of Actin vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ENSPMAT00000011113.1	1.942e-15	74.42	pep scaffold:Pmarinus_7.0:GL498954:115:1245:1 gene...	[more]
ENSPMAT00000004586.1	2.000e-15	74.42	pep scaffold:Pmarinus_7.0:GL479516:23873:27955:-1 ...	[more]

BLAST of Actin vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
ACT1	5.370e-15	69.77	Actin; structural protein involved in cell polariz...	[more]

BLAST of Actin vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO27265	3.167e-16	74.42	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38006	2.647e-15	74.42	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37976	2.817e-15	74.42	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO45013	2.863e-15	74.42	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42646	2.892e-15	74.42	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Actin vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
actb	3.850e-15	76.74	cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:1000...	[more]
actb	5.529e-15	76.74	cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:1000...	[more]
actb	5.845e-15	76.74	cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:1000...	[more]
actb	6.039e-15	76.74	cytoplasmic actin OlCA1 [Source:NCBI gene;Acc:1000...	[more]
ENSORLT00000021726.2	8.186e-15	74.42	actin, cytoplasmic [Source:NCBI gene;Acc:101155523...	[more]

BLAST of Actin vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000066020.1	5.834e-15	74.42	SMESG000066020.1	[more]
SMESG000058003.1	5.949e-15	74.42	SMESG000058003.1	[more]
SMESG000057992.1	5.949e-15	74.42	SMESG000057992.1	[more]
SMESG000057988.1	5.949e-15	74.42	SMESG000057988.1	[more]
SMESG000057914.1	5.949e-15	74.42	SMESG000057914.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence

transcript sequence

>SMED30021075 ID=SMED30021075|Name=Actin|organism=Schmidtea mediterranea sexual|type=transcript|length=470bp
CGCTCTTCCGATCTGTGAGTTTTGTCGATAATGAAATTTCCTGGAAGGTG
TTGGAATTAACTTGAATTGAATAAAAGTGTTGGAATTTCTTTTATTTAAT
TTATTTGGAATACAATTGTTGGTCCACCAAGATATTGCTATGATTGTCAT
TTTTGGAATGAGTCAAAAATATATCTATGATGAAAATGAGCCTGAATGTA
AGAGAGGAATTATAAGATTGGTTGAGGTATTTGGAAGAATTATGATGATA
TGGAAAATTATAGTATCATACTTTTTATAATGAGCTGAGAATAGCACCAG
TGGAACATCTAATTTTGTTGACTGAAGCACTATTGAATTCCAAGGCAAAC
CGCGAAAAGATCACACAAATTATGTTTGTGACATGTAAGAACTGTATAAC
AAGCAGTTCTTTCTTTTTATTGAATAATAAAAAACATCGATATCTTTAAA
AAAAAAAAAAAAAAATGCGA

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0003116	parenchymal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR004000	Actin
IPR020902	Actin/actin-like_CS

Vocabulary: **molecular function**
Term	Definition
GO:0000166	nucleotide binding
GO:0005524	ATP binding

Vocabulary: **cellular component**
Term	Definition
GO:0005737	cytoplasm
GO:0005856	cytoskeleton

Main menu

Actin

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 7

Owlery

blazegraph-runner