Homeobox domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30021036 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 12Note: Hover over icons to view figure legend
Homology
BLAST of Homeobox domain-containing protein vs. Ensembl Human
Match: HOXB9 (homeobox B9 [Source:HGNC Symbol;Acc:HGNC:5120]) HSP 1 Score: 76.6406 bits (187), Expect = 1.811e-15 Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT+YQ L LE EF N Y+TR +R E++ LNLSERQ+K+WFQNRRM Sbjct: 186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRM 238
BLAST of Homeobox domain-containing protein vs. Ensembl Human
Match: MEOX1 (mesenchyme homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7013]) HSP 1 Score: 73.9442 bits (180), Expect = 1.830e-15 Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 3 Query: 771 RFKMNNPMMEQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 R K ++ E PE + RK+R +T+ Q LE+EF ++Y+TR +R+EI+ L+LSERQ+KVWFQNRRM Sbjct: 36 RRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRM 109
BLAST of Homeobox domain-containing protein vs. Ensembl Human
Match: AC004080.3 (HOXA10-HOXA9 readthrough) HSP 1 Score: 73.1738 bits (178), Expect = 1.844e-15 Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF N Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 47 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRM 99
BLAST of Homeobox domain-containing protein vs. Ensembl Human
Match: HOXD12 (homeobox D12 [Source:HGNC Symbol;Acc:HGNC:5135]) HSP 1 Score: 77.0258 bits (188), Expect = 2.009e-15 Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 3 Query: 828 RCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 R RKKRKPYT+ Q LE+EF N +I RQKR E+S +LNLS++Q+K+WFQNRRM Sbjct: 201 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRM 255
BLAST of Homeobox domain-containing protein vs. Ensembl Human
Match: HOXC12 (homeobox C12 [Source:HGNC Symbol;Acc:HGNC:5124]) HSP 1 Score: 77.0258 bits (188), Expect = 2.154e-15 Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 3 Query: 819 MDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 ++ R RKKRKPY++ Q LE EF N +ITRQ+R E+S +LNLS++Q+K+WFQNRRM Sbjct: 210 INSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRM 267
BLAST of Homeobox domain-containing protein vs. Ensembl Celegans
Match: php-3 (Posterior Hox gene Paralog [Source:UniProtKB/TrEMBL;Acc:Q9XW88]) HSP 1 Score: 84.7297 bits (208), Expect = 1.956e-18 Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 3 Query: 825 HRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 H RKKRKPYT+ Q L LE EF N+Y+++QKRWE++ L+L+ERQ+K+WFQNRRM Sbjct: 197 HAMRKKRKPYTKAQTLELEKEFLYNTYVSKQKRWELAKYLHLTERQVKIWFQNRRM 252
BLAST of Homeobox domain-containing protein vs. Ensembl Celegans
Match: php-3 (Posterior Hox gene Paralog [Source:UniProtKB/TrEMBL;Acc:Q9XW88]) HSP 1 Score: 84.7297 bits (208), Expect = 1.956e-18 Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 3 Query: 825 HRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 H RKKRKPYT+ Q L LE EF N+Y+++QKRWE++ L+L+ERQ+K+WFQNRRM Sbjct: 197 HAMRKKRKPYTKAQTLELEKEFLYNTYVSKQKRWELAKYLHLTERQVKIWFQNRRM 252
BLAST of Homeobox domain-containing protein vs. Ensembl Celegans
Match: lin-39 (Homeobox protein lin-39 [Source:UniProtKB/Swiss-Prot;Acc:P34684]) HSP 1 Score: 69.707 bits (169), Expect = 2.222e-13 Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRMXXXXXXXXXPST 1028 +++R YTR Q L LE EF+++ Y+TR++R E++ L L+ERQ+K+WFQNRRMK KK KP T Sbjct: 166 KRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKKENKDKPMT 230
BLAST of Homeobox domain-containing protein vs. Ensembl Celegans
Match: lin-39 (Homeobox protein lin-39 [Source:UniProtKB/Swiss-Prot;Acc:P34684]) HSP 1 Score: 69.707 bits (169), Expect = 2.222e-13 Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRMXXXXXXXXXPST 1028 +++R YTR Q L LE EF+++ Y+TR++R E++ L L+ERQ+K+WFQNRRMK KK KP T Sbjct: 166 KRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKKENKDKPMT 230
BLAST of Homeobox domain-containing protein vs. Ensembl Celegans
Match: mab-5 (Homeobox protein mab-5 [Source:UniProtKB/Swiss-Prot;Acc:P10038]) HSP 1 Score: 68.1662 bits (165), Expect = 3.203e-13 Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 3 Query: 831 CRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 ++ R+ Y+R Q L LE EF+ + Y+TR++R EIS L+L+ERQ+K+WFQNRRM Sbjct: 117 SKRTRQTYSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRM 170
BLAST of Homeobox domain-containing protein vs. Ensembl Fly
Match: Abd-B (gene:FBgn0000015 transcript:FBtr0346764) HSP 1 Score: 82.0333 bits (201), Expect = 1.988e-17 Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 3 Query: 831 CRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKRKPY+++Q L LE EF N+Y+++QKRWE++ L L+ERQ+K+WFQNRRM Sbjct: 164 VRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRM 217
BLAST of Homeobox domain-containing protein vs. Ensembl Fly
Match: Abd-B (gene:FBgn0000015 transcript:FBtr0083381) HSP 1 Score: 81.6481 bits (200), Expect = 2.476e-17 Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 3 Query: 831 CRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKRKPY+++Q L LE EF N+Y+++QKRWE++ L L+ERQ+K+WFQNRRM Sbjct: 164 VRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRM 217
BLAST of Homeobox domain-containing protein vs. Ensembl Fly
Match: Abd-B (gene:FBgn0000015 transcript:FBtr0083382) HSP 1 Score: 81.6481 bits (200), Expect = 2.476e-17 Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 3 Query: 831 CRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKRKPY+++Q L LE EF N+Y+++QKRWE++ L L+ERQ+K+WFQNRRM Sbjct: 164 VRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRM 217
BLAST of Homeobox domain-containing protein vs. Ensembl Fly
Match: Abd-B (gene:FBgn0000015 transcript:FBtr0415465) HSP 1 Score: 81.6481 bits (200), Expect = 2.476e-17 Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 3 Query: 831 CRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKRKPY+++Q L LE EF N+Y+++QKRWE++ L L+ERQ+K+WFQNRRM Sbjct: 164 VRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRM 217
BLAST of Homeobox domain-containing protein vs. Ensembl Fly
Match: Abd-B (gene:FBgn0000015 transcript:FBtr0083385) HSP 1 Score: 81.6481 bits (200), Expect = 2.476e-17 Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 3 Query: 831 CRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKRKPY+++Q L LE EF N+Y+++QKRWE++ L L+ERQ+K+WFQNRRM Sbjct: 164 VRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRM 217
BLAST of Homeobox domain-containing protein vs. Ensembl Zebrafish
Match: hoxd9a (homeobox D9a [Source:NCBI gene;Acc:30350]) HSP 1 Score: 78.1814 bits (191), Expect = 5.340e-16 Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 3 Query: 831 CRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT+YQ L LE EF N Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 195 TRKKRCPYTKYQTLELEKEFLYNMYLTRDRRYEVARILNLTERQVKIWFQNRRM 248
BLAST of Homeobox domain-containing protein vs. Ensembl Zebrafish
Match: hoxa9a (homeobox A9a [Source:NCBI gene;Acc:58047]) HSP 1 Score: 76.6406 bits (187), Expect = 1.307e-15 Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF N+Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 185 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRM 237
BLAST of Homeobox domain-containing protein vs. Ensembl Zebrafish
Match: hoxa9a (homeobox A9a [Source:NCBI gene;Acc:58047]) HSP 1 Score: 76.6406 bits (187), Expect = 1.307e-15 Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF N+Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 185 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRM 237
BLAST of Homeobox domain-containing protein vs. Ensembl Zebrafish
Match: hoxc12a (homeobox C12a [Source:ZFIN;Acc:ZDB-GENE-000822-6]) HSP 1 Score: 76.6406 bits (187), Expect = 2.115e-15 Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 819 MDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 M R RKKRKPY++ Q LE EF N +ITRQ+R E+S +LNLS++Q+K+WFQNRRM Sbjct: 202 MHTRTRKKRKPYSKLQLAELEGEFMLNEFITRQRRRELSDRLNLSDQQVKIWFQNRRM 259
BLAST of Homeobox domain-containing protein vs. Ensembl Zebrafish
Match: hoxb9a (homeobox B9a [Source:NCBI gene;Acc:30344]) HSP 1 Score: 75.485 bits (184), Expect = 2.924e-15 Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT+YQ L LE EF N Y+TR +R E++ LNL+ERQ+K+WFQNRRM Sbjct: 185 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLTERQVKIWFQNRRM 237
BLAST of Homeobox domain-containing protein vs. Ensembl Xenopus
Match: ache (acetylcholinesterase (Cartwright blood group) [Source:Xenbase;Acc:XB-GENE-923160]) HSP 1 Score: 77.0258 bits (188), Expect = 1.362e-15 Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 3 Query: 654 LSYPIDINTIGSLPSYNLG--AGVFECN-----PGREMIQDAMMLARFKMNNPMMEQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 L P +++ +G+ YNLG A + N P ++ + + R +NP + RKKR PYT+YQ L LE EF N Y+TR +R E++ LNLSERQ+K+WFQNRRM Sbjct: 120 LGPPGELDKLGAQ-QYNLGSPAAREDANERATFPDNKLCEGSGDKDRTHQSNPSANWLHA----RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRM 234
BLAST of Homeobox domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000012532.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:32900780:32902234:1 gene:ENSXETG00000005181.1 transcript:ENSXETT00000012532.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 75.8702 bits (185), Expect = 4.289e-15 Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF N Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 196 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRM 248
BLAST of Homeobox domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000012547.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:32894477:32894749:1 gene:ENSXETG00000005170.1 transcript:ENSXETT00000012547.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 70.8626 bits (172), Expect = 6.796e-15 Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF N Y+TR++R EIS ++LS+RQ+K+WFQNRRM Sbjct: 17 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLSDRQVKIWFQNRRM 69
BLAST of Homeobox domain-containing protein vs. Ensembl Xenopus
Match: tollip (toll interacting protein [Source:Xenbase;Acc:XB-GENE-946207]) HSP 1 Score: 75.485 bits (184), Expect = 1.401e-14 Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF N Y+TR++R EIS +NL++RQ+K+WFQNRRM Sbjct: 278 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRM 330
BLAST of Homeobox domain-containing protein vs. Ensembl Xenopus
Match: HOXB6 (homeobox B6 [Source:NCBI gene;Acc:100124320]) HSP 1 Score: 73.559 bits (179), Expect = 1.470e-14 Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 R+ R+ YTRYQ L LE EF+ N Y+TR++R EI+ L L+ERQIK+WFQNRRM Sbjct: 146 RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHSLCLTERQIKIWFQNRRM 198
BLAST of Homeobox domain-containing protein vs. Ensembl Mouse
Match: Hoxb9 (homeobox B9 [Source:MGI Symbol;Acc:MGI:96190]) HSP 1 Score: 77.0258 bits (188), Expect = 1.045e-15 Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT+YQ L LE EF N Y+TR +R E++ LNLSERQ+K+WFQNRRM Sbjct: 186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRM 238
BLAST of Homeobox domain-containing protein vs. Ensembl Mouse
Match: Hoxd12 (homeobox D12 [Source:MGI Symbol;Acc:MGI:96204]) HSP 1 Score: 76.6406 bits (187), Expect = 1.627e-15 Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 3 Query: 828 RCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 R RKKRKPYT+ Q LE+EF N +I RQKR E+S +LNLS++Q+K+WFQNRRM Sbjct: 199 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRM 253
BLAST of Homeobox domain-containing protein vs. Ensembl Mouse
Match: Hoxc12 (homeobox C12 [Source:MGI Symbol;Acc:MGI:96194]) HSP 1 Score: 76.2554 bits (186), Expect = 3.013e-15 Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 3 Query: 828 RCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 R RKKRKPY++ Q LE EF N +ITRQ+R E+S +LNLS++Q+K+WFQNRRM Sbjct: 211 RSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRM 265
BLAST of Homeobox domain-containing protein vs. Ensembl Mouse
Match: Hoxa9 (homeobox A9 [Source:MGI Symbol;Acc:MGI:96180]) HSP 1 Score: 76.2554 bits (186), Expect = 3.041e-15 Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF N Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 206 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRM 258
BLAST of Homeobox domain-containing protein vs. Ensembl Mouse
Match: Hoxd9 (homeobox D9 [Source:MGI Symbol;Acc:MGI:96210]) HSP 1 Score: 76.2554 bits (186), Expect = 5.534e-15 Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRR 989 RKKR PYT+YQ L LE EF N Y+TR +R+E++ LNL+ERQ+K+WFQNRR Sbjct: 273 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRR 324
BLAST of Homeobox domain-containing protein vs. UniProt/SwissProt
Match: sp|P09087|ABDB_DROME (Homeobox protein abdominal-B OS=Drosophila melanogaster OX=7227 GN=Abd-B PE=1 SV=3) HSP 1 Score: 83.1889 bits (204), Expect = 3.408e-16 Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 3 Query: 831 CRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKRKPY+++Q L LE EF N+Y+++QKRWE++ L L+ERQ+K+WFQNRRM Sbjct: 387 VRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRM 440
BLAST of Homeobox domain-containing protein vs. UniProt/SwissProt
Match: sp|P24340|HXD9_CHICK (Homeobox protein Hox-D9 (Fragment) OS=Gallus gallus OX=9031 GN=HOXD9 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.826e-16 Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT+YQ L LE EF N Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 2 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRM 54
BLAST of Homeobox domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9PWM6|HXD9A_DANRE (Homeobox protein Hox-D9a OS=Danio rerio OX=7955 GN=hoxd9a PE=2 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 4.031e-15 Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 3 Query: 831 CRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT+YQ L LE EF N Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 195 TRKKRCPYTKYQTLELEKEFLYNMYLTRDRRYEVARILNLTERQVKIWFQNRRM 248
BLAST of Homeobox domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9PWD5|HXA9_MORSA (Homeobox protein Hox-A9 OS=Morone saxatilis OX=34816 GN=hoxa9 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.554e-15 Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 3 Query: 831 CRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF N+Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 202 TRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRM 255
BLAST of Homeobox domain-containing protein vs. UniProt/SwissProt
Match: sp|P50209|HXA9_AMBME (Homeobox protein Hox-A9 (Fragment) OS=Ambystoma mexicanum OX=8296 GN=HOXA9 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.837e-15 Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF N Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 79 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRM 131
BLAST of Homeobox domain-containing protein vs. TrEMBL
Match: A0A1S6KMF2 (Homeobox domain-containing protein OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 617.846 bits (1592), Expect = 0.000e+0 Identity = 306/307 (99.67%), Postives = 307/307 (100.00%), Query Frame = 3 Query: 111 MQSNQFDFSSTNPFHQYAEHDNQQQSSSFSDEPLPPICGSLFKSAVSENEKYGSTSIGPGFHWRPNQDHMGLWKDNDSTFQDEFPYKSSSINETMMNIFSPSPSSPTKPMIYPYIESTNNLSGFQYPYITSQIANLNQMTNTSFSYRGFTFPSNVPPSLYDDSSVNVDQNSWEHSLKPPVHLSYPIDINTIGSLPSYNLGAGVFECNPGREMIQDAMMLARFKMNNPMMEQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRMXXXXXXXXXPSTG 1031 MQS+QFDFSSTNPFHQYAEHDNQQQSSSFSDEPLPPICGSLFKSAVSENEKYGSTSIGPGFHWRPNQDHMGLWKDNDSTFQDEFPYKSSSINETMMNIFSPSPSSPTKPMIYPYIESTNNLSGFQYPYITSQIANLNQMTNTSFSYRGFTFPSNVPPSLYDDSSVNVDQNSWEHSLKPPVHLSYPIDINTIGSLPSYNLGAGVFECNPGREMIQDAMMLARFKMNNPMMEQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRMKKKKLQIKKPSTG Sbjct: 1 MQSDQFDFSSTNPFHQYAEHDNQQQSSSFSDEPLPPICGSLFKSAVSENEKYGSTSIGPGFHWRPNQDHMGLWKDNDSTFQDEFPYKSSSINETMMNIFSPSPSSPTKPMIYPYIESTNNLSGFQYPYITSQIANLNQMTNTSFSYRGFTFPSNVPPSLYDDSSVNVDQNSWEHSLKPPVHLSYPIDINTIGSLPSYNLGAGVFECNPGREMIQDAMMLARFKMNNPMMEQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRMKKKKLQIKKPSTG 307
BLAST of Homeobox domain-containing protein vs. TrEMBL
Match: Q9BLF8 (Hox class homeodomain protein DjAbd-Bb OS=Dugesia japonica OX=6161 GN=DjAbd-Bb PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 8.550e-25 Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 3 Query: 765 LARFKMNNPMMEQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRMXXXXXXXXXPST 1028 +RF + +++ + E + R RKKRKPYTRYQ +VLESEF N+YITRQKRWEISCKL+LSERQ+KVWFQNRRMKKKKLQ +KP + Sbjct: 302 FSRFHTEDMLLDSGSLTEAEMRSRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRMKKKKLQTRKPGS 389
BLAST of Homeobox domain-containing protein vs. TrEMBL
Match: A0A504YXH1 (Homeobox protein Hox-D10 OS=Fasciola gigantica OX=46835 GN=FGIG_01387 PE=4 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 8.956e-25 Identity = 75/164 (45.73%), Postives = 97/164 (59.15%), Query Frame = 3 Query: 561 FPSNVP--PSLYDDSSVNVDQNSWEHSLKPPVHLSYPIDINTIGSLPSYNLGAGVFECNPGREMIQDAMMLARFKMNNPMMEQEYVPEMD-----HRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRMXXXXXXXXXPSTG 1031 FP +P PSL ++V+ D PPVH + + SLP E + + +++ F + +EY PE++ R RKKRKPYTRYQ +VLE+EF N+YITRQKRWEISCKL+L+ERQ+KVWFQNRRMKKKKLQ + PS G Sbjct: 517 FPLRLPTLPSLLSATAVSSDSG-------PPVHSGHSVVHRLPNSLP---------EVHSSATLHTHSLIPYPFPTGGGPLYEEYPPEVEPNNGETRSRKKRKPYTRYQTMVLENEFIGNAYITRQKRWEISCKLHLTERQVKVWFQNRRMKKKKLQSRNPSVG 664
BLAST of Homeobox domain-containing protein vs. TrEMBL
Match: A0A4E0S0C4 (Homeobox protein Hox-D10 OS=Fasciola hepatica OX=6192 GN=D915_003749 PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.806e-24 Identity = 76/165 (46.06%), Postives = 98/165 (59.39%), Query Frame = 3 Query: 558 TFPSNVP--PSLYDDSSVNVDQNSWEHSLKPPVHLSYPIDINTIGSLPSYNLGAGVFECNPGREMIQDAMMLARFKMNNPMMEQEYVPEMD-----HRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRMXXXXXXXXXPSTG 1031 +FP +P PSL ++V+ D PPVH + + SLP + A +P ++ F + +EY PE++ R RKKRKPYTRYQ +VLE+EF N+YITRQKRWEISCKL+L+ERQ+KVWFQNRRMKKKKLQ + PS G Sbjct: 516 SFPLRLPTLPSLLSATAVSSDSG-------PPVHSGHSVVHRLPNSLPEVHSSA-TLHTHP--------LIPYPFPTGGGPLYEEYPPEVELNNGETRSRKKRKPYTRYQTMVLENEFIGNAYITRQKRWEISCKLHLTERQVKVWFQNRRMKKKKLQSRNPSVG 664
BLAST of Homeobox domain-containing protein vs. TrEMBL
Match: T1EF40 (Homeobox domain-containing protein OS=Helobdella robusta OX=6412 GN=20195192 PE=4 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.075e-24 Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 3 Query: 828 RCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 R RKKRKPYTRYQ +VLE+EF SNSYITRQKRWEISCKL+LSERQ+KVWFQNRRM Sbjct: 19 RQRKKRKPYTRYQTMVLENEFVSNSYITRQKRWEISCKLHLSERQVKVWFQNRRM 73
BLAST of Homeobox domain-containing protein vs. Ensembl Cavefish
Match: hoxd9a (homeobox protein Hox-D9a [Source:NCBI gene;Acc:103033248]) HSP 1 Score: 77.7962 bits (190), Expect = 5.622e-16 Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT+YQ L LE EF N Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 196 RKKRCPYTKYQTLELEKEFLYNMYLTRDRRYEVARILNLTERQVKIWFQNRRM 248
BLAST of Homeobox domain-containing protein vs. Ensembl Cavefish
Match: hoxd9a (homeobox protein Hox-D9a [Source:NCBI gene;Acc:103033248]) HSP 1 Score: 77.7962 bits (190), Expect = 5.622e-16 Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT+YQ L LE EF N Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 196 RKKRCPYTKYQTLELEKEFLYNMYLTRDRRYEVARILNLTERQVKIWFQNRRM 248
BLAST of Homeobox domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000005320.2 (homeobox protein Hox-A9a-like [Source:NCBI gene;Acc:103022020]) HSP 1 Score: 77.0258 bits (188), Expect = 9.652e-16 Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF N+Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 192 RKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRM 244
BLAST of Homeobox domain-containing protein vs. Ensembl Cavefish
Match: hoxc12a (homeobox protein Hox-C12a-like [Source:NCBI gene;Acc:103031159]) HSP 1 Score: 77.0258 bits (188), Expect = 1.079e-15 Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 819 MDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 M R RKKRKPY++ Q LE EF N +ITRQ+R E+S +LNLS++Q+K+WFQNRRM Sbjct: 205 MHTRTRKKRKPYSKLQLAELEGEFMMNEFITRQRRRELSDRLNLSDQQVKIWFQNRRM 262
BLAST of Homeobox domain-containing protein vs. Ensembl Cavefish
Match: hoxb9a (homeobox B9 [Source:NCBI gene;Acc:103044445]) HSP 1 Score: 75.8702 bits (185), Expect = 2.124e-15 Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT+YQ L LE EF N Y+TR +R E++ LNL+ERQ+K+WFQNRRM Sbjct: 185 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLTERQVKIWFQNRRM 237
BLAST of Homeobox domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011221.1 (pep scaffold:Pmarinus_7.0:GL477881:55654:55833:1 gene:ENSPMAG00000010194.1 transcript:ENSPMAT00000011221.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 72.7886 bits (177), Expect = 7.158e-17 Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT+YQ L LE EF N Y+TR++R EIS +NL++RQ+K+WFQNRRM Sbjct: 2 RKKRCPYTKYQTLELEKEFLFNMYLTRERRLEISRGVNLTDRQVKIWFQNRRM 54
BLAST of Homeobox domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011242.1 (pep scaffold:Pmarinus_7.0:GL476758:607601:607780:-1 gene:ENSPMAG00000010215.1 transcript:ENSPMAT00000011242.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 72.4034 bits (176), Expect = 1.203e-16 Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PY++ Q L LE EF N Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 2 RKKRCPYSKQQTLELEKEFLFNMYLTRDRRYEVARGLNLTERQVKIWFQNRRM 54
BLAST of Homeobox domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011060.1 (pep scaffold:Pmarinus_7.0:GL482503:5543:5722:1 gene:ENSPMAG00000010033.1 transcript:ENSPMAT00000011060.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 72.4034 bits (176), Expect = 1.203e-16 Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PY++ Q L LE EF N Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 2 RKKRCPYSKQQTLELEKEFLFNMYLTRDRRYEVARGLNLTERQVKIWFQNRRM 54
BLAST of Homeobox domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011116.1 (pep scaffold:Pmarinus_7.0:GL482944:7995:8174:-1 gene:ENSPMAG00000010089.1 transcript:ENSPMAT00000011116.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 69.3218 bits (168), Expect = 1.380e-15 Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RK R+ Y+R+Q+L LE EF+ N Y+ R++R EI+ L LSERQ+K+WFQNRRM Sbjct: 2 RKGRRSYSRHQSLELEKEFHFNRYLARRRRVEIAHSLCLSERQVKIWFQNRRM 54
BLAST of Homeobox domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011449.1 (pep scaffold:Pmarinus_7.0:GL493006:3300:3479:1 gene:ENSPMAG00000010422.1 transcript:ENSPMAT00000011449.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 68.9366 bits (167), Expect = 1.752e-15 Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF + Y+TR++R EIS L+L++RQ+K+WFQNRRM Sbjct: 2 RKKRCPYTKHQTLELEKEFLFSMYLTRERRLEISHLLSLTDRQVKIWFQNRRM 54
BLAST of Homeobox domain-containing protein vs. Ensembl Nematostella
Match: MOXC (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR27]) HSP 1 Score: 71.2478 bits (173), Expect = 8.919e-16 Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 3 Query: 798 EQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 E E + R RK+R +++YQ LE EF N+Y+TR +R+EI+ L+L ERQ+KVWFQNRRM Sbjct: 3 EMERNEDAKSRKRKERTVFSKYQLTELEREFCRNNYLTRLRRYEIAVSLDLGERQVKVWFQNRRM 67
BLAST of Homeobox domain-containing protein vs. Ensembl Nematostella
Match: MOXB (MoxB; Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR28]) HSP 1 Score: 68.1662 bits (165), Expect = 2.022e-14 Identity = 30/53 (56.60%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RK+R +T++Q LE+EF N+Y+TR +R+EI+ L+L+ERQ+KVWFQNRRM Sbjct: 17 RKERTAFTKHQIQELENEFQRNNYLTRLRRYEIAVSLDLTERQVKVWFQNRRM 69
BLAST of Homeobox domain-containing protein vs. Ensembl Nematostella
Match: EDO42196 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S291]) HSP 1 Score: 63.929 bits (154), Expect = 2.664e-13 Identity = 28/56 (50.00%), Postives = 42/56 (75.00%), Query Frame = 3 Query: 822 DHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRR 989 +++ R++R +T Q L LE EF+ N YITR +R+E++ LNL+E Q+K+WFQNRR Sbjct: 6 ENKPRRQRTTFTSEQTLKLELEFHQNEYITRSRRFELAACLNLTETQVKIWFQNRR 61
BLAST of Homeobox domain-containing protein vs. Ensembl Nematostella
Match: ANTHOX1A.NV (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGM8]) HSP 1 Score: 63.1586 bits (152), Expect = 3.598e-12 Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 3 Query: 837 KKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 +KR YTR Q L LE EF+ Y+T+++R E++ L+L+ERQ+K+WFQNRRM Sbjct: 81 RKRMAYTRIQLLELEKEFHFTRYLTKERRTEMARMLDLTERQVKIWFQNRRM 132
BLAST of Homeobox domain-containing protein vs. Ensembl Nematostella
Match: HOX2 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RS10]) HSP 1 Score: 63.929 bits (154), Expect = 6.492e-12 Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 3 Query: 684 GSLPSYNLGAGVFECNPGREMIQDAMMLARFKMNNPMMEQE------YVPEMD---------HRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 S+PS GAG++ RE+ +D ++L + + E+E Y D R ++ R YT Q L LE EF+ N Y++R +R +I+ L+LSE+Q+K+WFQNRR+ Sbjct: 69 ASIPS---GAGLY----SRELQKDHILL---QQHYAATEEERLHLASYASSRDPDSPSRGGNSRSKRIRTAYTSMQLLELEKEFSQNRYLSRLRRIQIAALLDLSEKQVKIWFQNRRV 176
BLAST of Homeobox domain-containing protein vs. Ensembl Medaka
Match: hoxb9a (homeobox B9 [Source:NCBI gene;Acc:100049206]) HSP 1 Score: 78.1814 bits (191), Expect = 5.846e-16 Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT+YQ L LE EF N Y+TR +R E++ LNL+ERQ+K+WFQNRRM Sbjct: 218 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARALNLTERQVKIWFQNRRM 270
BLAST of Homeobox domain-containing protein vs. Ensembl Medaka
Match: hoxa9 (homeobox A9 [Source:NCBI gene;Acc:100049208]) HSP 1 Score: 77.0258 bits (188), Expect = 8.706e-16 Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 3 Query: 831 CRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF N+Y+TR +R+E++ LNL+ERQ+K+WFQNRRM Sbjct: 196 TRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRM 249
BLAST of Homeobox domain-containing protein vs. Ensembl Medaka
Match: hoxc12a (homeobox protein Hox-C12a [Source:NCBI gene;Acc:101173058]) HSP 1 Score: 77.0258 bits (188), Expect = 1.289e-15 Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 819 MDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 M R RKKRKPY++ Q LE EF N +ITRQ+R E+S +LNLS++Q+K+WFQNRRM Sbjct: 200 MHTRTRKKRKPYSKLQLAELEGEFMLNEFITRQRRRELSDRLNLSDQQVKIWFQNRRM 257
BLAST of Homeobox domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000001667.2 (homeobox protein Hox-D9b [Source:NCBI gene;Acc:101175260]) HSP 1 Score: 77.0258 bits (188), Expect = 2.157e-15 Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT++Q L LE EF N Y+TR +R E++ LNL+ERQ+K+WFQNRRM Sbjct: 248 RKKRCPYTKHQTLELEKEFLYNMYLTRDRRLEVAGLLNLTERQVKIWFQNRRM 300
BLAST of Homeobox domain-containing protein vs. Ensembl Medaka
Match: hoxd9 (homeobox D10 [Source:NCBI gene;Acc:101163860]) HSP 1 Score: 75.485 bits (184), Expect = 4.421e-15 Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 3 Query: 834 RKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 RKKR PYT+YQ L LE EF N Y+TR +R+E++ L+L+ERQ+K+WFQNRRM Sbjct: 204 RKKRCPYTKYQTLELEKEFLYNMYLTRDRRFEVARILSLTERQVKIWFQNRRM 256
BLAST of Homeobox domain-containing protein vs. Planmine SMEST
Match: SMESG000054107.1 (SMESG000054107.1) HSP 1 Score: 617.461 bits (1591), Expect = 0.000e+0 Identity = 305/307 (99.35%), Postives = 307/307 (100.00%), Query Frame = 3 Query: 111 MQSNQFDFSSTNPFHQYAEHDNQQQSSSFSDEPLPPICGSLFKSAVSENEKYGSTSIGPGFHWRPNQDHMGLWKDNDSTFQDEFPYKSSSINETMMNIFSPSPSSPTKPMIYPYIESTNNLSGFQYPYITSQIANLNQMTNTSFSYRGFTFPSNVPPSLYDDSSVNVDQNSWEHSLKPPVHLSYPIDINTIGSLPSYNLGAGVFECNPGREMIQDAMMLARFKMNNPMMEQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRMXXXXXXXXXPSTG 1031 MQSNQFDFSSTNPFHQYAEHDNQQQSSSFSDEPLPPICGSLFKSAV+ENEKYGSTSIGPGFHWRPNQDHMGLWKDNDSTFQDEFPYKSSSINETMMNIFSPSPSSPTKPMIYPYIESTNN+SGFQYPYITSQIANLNQMTNTSFSYRGFTFPSNVPPSLYDDSSVNVDQNSWEHSLKPPVHLSYPIDINTIGSLPSYNLGAGVFECNPGREMIQDAMMLARFKMNNPMMEQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRMKKKKLQIKKPSTG Sbjct: 1 MQSNQFDFSSTNPFHQYAEHDNQQQSSSFSDEPLPPICGSLFKSAVTENEKYGSTSIGPGFHWRPNQDHMGLWKDNDSTFQDEFPYKSSSINETMMNIFSPSPSSPTKPMIYPYIESTNNISGFQYPYITSQIANLNQMTNTSFSYRGFTFPSNVPPSLYDDSSVNVDQNSWEHSLKPPVHLSYPIDINTIGSLPSYNLGAGVFECNPGREMIQDAMMLARFKMNNPMMEQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRMKKKKLQIKKPSTG 307
BLAST of Homeobox domain-containing protein vs. Planmine SMEST
Match: SMESG000033048.1 (SMESG000033048.1) HSP 1 Score: 114.775 bits (286), Expect = 2.621e-28 Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 3 Query: 765 LARFKMNNPMMEQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRMXXXXXXXXXPST 1028 +RF + +++ + E + R RKKRKPYTRYQ +VLESEF N+YITRQKRWEISCKL+LSERQ+KVWFQNRRMKKKKLQ +KP + Sbjct: 304 FSRFHTEDMLLDSGSLTEAEMRSRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRMKKKKLQTRKPGS 391
BLAST of Homeobox domain-containing protein vs. Planmine SMEST
Match: SMESG000022668.1 (SMESG000022668.1) HSP 1 Score: 93.2041 bits (230), Expect = 1.446e-22 Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 3 Query: 816 EMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 E D + R KR+PY+RYQ +VLESE+ + YI+RQKRW+I+CKLNLSERQIK+WFQNRRM Sbjct: 97 EKDQKERTKRRPYSRYQLMVLESEYINTEYISRQKRWDIACKLNLSERQIKIWFQNRRM 155
BLAST of Homeobox domain-containing protein vs. Planmine SMEST
Match: SMESG000079807.1 (SMESG000079807.1) HSP 1 Score: 75.485 bits (184), Expect = 4.720e-15 Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 3 Query: 786 NPMMEQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 NP M E DH+ + R+ YTRYQ L LE EF+ N Y+TR++R EI+ L+L+ERQIK+WFQNRRM Sbjct: 202 NPKMNSE--SSSDHK--RSRQTYTRYQTLELEKEFHFNKYLTRRRRIEIAHALSLTERQIKIWFQNRRM 266
BLAST of Homeobox domain-containing protein vs. Planmine SMEST
Match: SMESG000079807.1 (SMESG000079807.1) HSP 1 Score: 75.485 bits (184), Expect = 5.283e-15 Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 3 Query: 786 NPMMEQEYVPEMDHRCRKKRKPYTRYQNLVLESEFNSNSYITRQKRWEISCKLNLSERQIKVWFQNRRM 992 NP M E DH+ + R+ YTRYQ L LE EF+ N Y+TR++R EI+ L+L+ERQIK+WFQNRRM Sbjct: 205 NPKMNSE--SSSDHK--RSRQTYTRYQTLELEKEFHFNKYLTRRRRIEIAHALSLTERQIKIWFQNRRM 269 The following BLAST results are available for this feature:
BLAST of Homeobox domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Homeobox domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Homeobox domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Homeobox domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Homeobox domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Homeobox domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Homeobox domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Homeobox domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Homeobox domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Homeobox domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of Homeobox domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Homeobox domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Homeobox domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Homeobox domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30021036 ID=SMED30021036|Name=Homeobox domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1111bpback to top protein sequence of SMED30021036-orf-1 >SMED30021036-orf-1 ID=SMED30021036-orf-1|Name=SMED30021036-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=308bp MQSNQFDFSSTNPFHQYAEHDNQQQSSSFSDEPLPPICGSLFKSAVSENEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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