SMED30020913
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30020913 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of SMED30020913 vs. Planmine SMEST
Match: SMESG000009078.1 (SMESG000009078.1) HSP 1 Score: 701.049 bits (1808), Expect = 0.000e+0 Identity = 344/374 (91.98%), Postives = 345/374 (92.25%), Query Frame = 1 Query: 829 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQSIKHKDILDNFLAYLDKSAMVFYGSILSTPGQGRGNIFQVVSSSYPDKVFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGSIVQCSHNGFLQDEYETT 1950 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQ +KSAMVFYGSILSTPGQGR VFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGSIVQCSHNGFLQDEYETT Sbjct: 239 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQ---------------NKSAMVFYGSILSTPGQGR--------------VFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGSIVQCSHNGFLQDEYETT 583 HSP 2 Score: 441.81 bits (1135), Expect = 0.000e+0 Identity = 221/250 (88.40%), Postives = 221/250 (88.40%), Query Frame = 2 Query: 86 CPQNGLSLIVFD-TYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIFVSDSSSNYINFDKNLLLTVDRFLGELQTTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLYEPNVLPCQAYCNDG 832 CPQNGLSLIVFD TYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIF TTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLYEPNVLPCQAYCN G Sbjct: 16 CPQNGLSLIVFDKTYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIF---------------------------TTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLYEPNVLPCQAYCNVG 238
BLAST of SMED30020913 vs. Planmine SMEST
Match: SMESG000009078.1 (SMESG000009078.1) HSP 1 Score: 629.017 bits (1621), Expect = 0.000e+0 Identity = 310/340 (91.18%), Postives = 311/340 (91.47%), Query Frame = 1 Query: 829 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQSIKHKDILDNFLAYLDKSAMVFYGSILSTPGQGRGNIFQVVSSSYPDKVFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLR 1848 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQ +KSAMVFYGSILSTPGQGR VFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLR Sbjct: 239 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQ---------------NKSAMVFYGSILSTPGQGR--------------VFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLR 549 HSP 2 Score: 441.039 bits (1133), Expect = 0.000e+0 Identity = 221/250 (88.40%), Postives = 221/250 (88.40%), Query Frame = 2 Query: 86 CPQNGLSLIVFD-TYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIFVSDSSSNYINFDKNLLLTVDRFLGELQTTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLYEPNVLPCQAYCNDG 832 CPQNGLSLIVFD TYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIF TTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLYEPNVLPCQAYCN G Sbjct: 16 CPQNGLSLIVFDKTYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIF---------------------------TTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLYEPNVLPCQAYCNVG 238
BLAST of SMED30020913 vs. Planmine SMEST
Match: SMESG000009052.1 (SMESG000009052.1) HSP 1 Score: 328.561 bits (841), Expect = 2.769e-119 Identity = 173/477 (36.27%), Postives = 266/477 (55.77%), Query Frame = 1 Query: 829 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQSIKHKDILDNFLAYLDKSAMVFYGSILSTPGQGRGNIFQVVSSSYPDKVFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGSIVQCSHNGFLQDEYETTVSYYKLAKSDYELREEGRKYLRIPYNLEHKGYKVICKVKGXXXXXXXXQFEIKNELSFNTRHRYIISESNKICLRFDSYVEMPTILKISQKGVTLAHLLFHLH 2259 WL +Y + + C+++D C N L+ V+C P+ CLPV N +Y+CE + +N+++ V F+ E + D + + D+ N A + F +L R F V DK F S ++L +W R + FRIYV PT +K+Y F+N + ++ YI+IGE I S ++P YR + +W SK V G I I + G ++C+ LI KGR +++K F V+ F++ EWN T+N++N T I C A+A+ DF++ ++QL G S I + I + GG+YE +C+F++ G+QYS+YL FKLRV S++C+F YAN+ GSI QC HNGF+QDEY V++Y S +E+ E KYLRIPY+L H YK+ C + I NI +I F +++ + NTR Y+I+ NK+CL D YV+ P I + +T+AH +F+ + Sbjct: 249 WLTKYVSFTVQNKTEISITCETMDYCSNTLTSQFVDCNPPKICLPVSNTSYFCELVWTSFISKTTNKNLTSNVFFHGETIVVNIDKTYLTNSDVWYNTTATASDQQL-FQDYVLKHLFDERTLTFMVTEQIDIDKEFNISIKIHLNAWNRIYERQKLFRIYVPPTELKIYHFENLSEISDYIYIGENILANSTSSPLYRTLYIWNSKLVDVPNRLGRMIYINSSTYLGFVKLSCNSTLIVKGRESPWSYKDFPLIVRPFQFFEWNKTNNILNYGTVIKCQAKAFYDFKIIVVQLRGHSSIFTNTDVIKLSGILGGTYELICFFITDFGFQYSTYLEFKLRVHPSEVCWFPYANVRGSIFQCGHNGFIQDEYNIFVNFYVHEGSIWEVVLENEKYLRIPYHLSHANYKIQCSIVNIFNIKDNITFNMEHHILSNTRENYLITHPNKVCLANDYYVDPPKISENFDTSMTIAHYIFYFN 724 HSP 2 Score: 121.709 bits (304), Expect = 2.769e-119 Identity = 69/245 (28.16%), Postives = 115/245 (46.94%), Query Frame = 2 Query: 107 LIVFDTYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYD--PAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIFVSDSSSNYINFDKNLLLTVDRFLGELQTTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCT-PLYEPNVLPCQAYCNDG 832 L+++D +I G + YLK ++ F + G CDFD + + CD I+SR+C++ Q +G R P+ YS + SF V N +I+ I+ C ++ + N + + L L++ Y+++ Q++TF+GD ++ G FGI+ N + V +L + M E++I+K C Y G CWY C + R+TC C ++ NV PC C G Sbjct: 5 LVIYDVDNGGNIVFGNAIAEIYLKALDVFYESYGPIKFCDFDTFRRYTKYRYCDLEIYSRICIMKQNLIGIRTPKYYSGLSMRSFSVTENRVISYNKKIEQEFNCGDIAHVTFDQQNSVYFPMDKLKYLSTVNGPYSDVTQITTFAGDGDFWGNGEFESFGIYSRRVEGFLTNLQTIMPYKVFTYLKVFDSKMYEEYIIKVVCSSKYYGSTCWYTCKDTYRITCNCVYSVFYVNV-PCNPTCKPG 248
BLAST of SMED30020913 vs. Planmine SMEST
Match: SMESG000009055.1 (SMESG000009055.1) HSP 1 Score: 356.681 bits (914), Expect = 1.028e-110 Identity = 195/549 (35.52%), Postives = 304/549 (55.37%), Query Frame = 1 Query: 829 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGI-PENISTEVLFYEEFLEAEFDSQSIKHKDILDNFLAYLDKSAMVFYGSILSTPGQGRGNIFQVVSSSYPDKVFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGSIVQCSHNGFLQDEYETTVSYYKLAKSDYELREEGRKYLRIPYNLEHKGYKVICKVKGXXXXXXXXQFEIKNELSFNTRHRYIISESNKICLRFDSYVEMPTILKISQKGVTLAHLLFHLHQNESFYFIVIPICLLMSAFPFIATGIITDIASMLHEESVLLKAQSXXXXXXXXXXALNDRLRKESRYPVAL 2472 WLK+Y F I+ C++++VC N L+ NC P+ CLPVDN TYYCEY+ + + +N+S ++ FY E + D + HKD+ N A + VF SIL + F V++ D++ F+ NLK+WE M + FRI+ RP +V +YRFDN TP+ Y IG+ + S+A PQYR I+ W S ++F FPFG I IP ++ G C+ LIT+ R++ K + F+KLFEYL WNNT+N + ++ C ++ + ++L +IQ+ G QI T +YIT GG Y FVCYFL+ +G+ YS+YL F+L+ S+IC FL+AN+ GSI+QC H+G+ QDEY T V+ Y +D++ +G++YLRIPY + Y+ C V+ ++ + + K+ L +TR RY + NK CL++ YVE+P + + V L H + L + +I C L + F+ +I I E + + K++++++ ++N RL E+R + L Sbjct: 125 WLKKYVNYIFKEFYEVILTCNTMNVCTNTLAKGSTNCLPPKTCLPVDNATYYCEYILPYIQSYEVHGKNLSDQIFFYNEIISVTLDEFILIHKDVAVNSTASIYYKQYVFETSILHYRFEILKPSFIVITDKVIDQLLNFTITFNLKAWEYVMEQTKMFRIFRRPEVVSIYRFDNKTPLMYYTLIGDTLFAISNALPQYRTIVHWISNFLEFPFPFGSLISIPTSSPLGHVKFMCNITLITQSRSMVSVTKTSSVFIKLFEYLRWNNTNNFLESSSVSQCQTKSNILYKLEVIQIQGDYQIITTSDYITTAGLPGGQYGFVCYFLTNIGFLYSAYLEFRLQFIVSKICTFLFANVHGSIIQCGHDGYNQDEYNTRVALYAWNGNDFQFAVDGKRYLRIPYQMHITLYRFHCTVQNKFISSVILSLQFKDYLYQSTRQRYPFTSLNKYCLKYQEYVEIPLASHFADEQVNLEHKVLTLSIDNMENISLIFACFLCTTSVFLFGILIQGIYLKGVSERTSIGRANIDKMKQIKLASINTRLNIETRKTIIL 673
BLAST of SMED30020913 vs. Planmine SMEST
Match: SMESG000009055.1 (SMESG000009055.1) HSP 1 Score: 357.066 bits (915), Expect = 6.896e-110 Identity = 195/549 (35.52%), Postives = 304/549 (55.37%), Query Frame = 1 Query: 829 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGI-PENISTEVLFYEEFLEAEFDSQSIKHKDILDNFLAYLDKSAMVFYGSILSTPGQGRGNIFQVVSSSYPDKVFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGSIVQCSHNGFLQDEYETTVSYYKLAKSDYELREEGRKYLRIPYNLEHKGYKVICKVKGXXXXXXXXQFEIKNELSFNTRHRYIISESNKICLRFDSYVEMPTILKISQKGVTLAHLLFHLHQNESFYFIVIPICLLMSAFPFIATGIITDIASMLHEESVLLKAQSXXXXXXXXXXALNDRLRKESRYPVAL 2472 WLK+Y F I+ C++++VC N L+ NC P+ CLPVDN TYYCEY+ + + +N+S ++ FY E + D + HKD+ N A + VF SIL + F V++ D++ F+ NLK+WE M + FRI+ RP +V +YRFDN TP+ Y IG+ + S+A PQYR I+ W S ++F FPFG I IP ++ G C+ LIT+ R++ K + F+KLFEYL WNNT+N + ++ C ++ + ++L +IQ+ G QI T +YIT GG Y FVCYFL+ +G+ YS+YL F+L+ S+IC FL+AN+ GSI+QC H+G+ QDEY T V+ Y +D++ +G++YLRIPY + Y+ C V+ ++ + + K+ L +TR RY + NK CL++ YVE+P + + V L H + L + +I C L + F+ +I I E + + K++++++ ++N RL E+R + L Sbjct: 213 WLKKYVNYIFKEFYEVILTCNTMNVCTNTLAKGSTNCLPPKTCLPVDNATYYCEYILPYIQSYEVHGKNLSDQIFFYNEIISVTLDEFILIHKDVAVNSTASIYYKQYVFETSILHYRFEILKPSFIVITDKVIDQLLNFTITFNLKAWEYVMEQTKMFRIFRRPEVVSIYRFDNKTPLMYYTLIGDTLFAISNALPQYRTIVHWISNFLEFPFPFGSLISIPTSSPLGHVKFMCNITLITQSRSMVSVTKTSSVFIKLFEYLRWNNTNNFLESSSVSQCQTKSNILYKLEVIQIQGDYQIITTSDYITTAGLPGGQYGFVCYFLTNIGFLYSAYLEFRLQFIVSKICTFLFANVHGSIIQCGHDGYNQDEYNTRVALYAWNGNDFQFAVDGKRYLRIPYQMHITLYRFHCTVQNKFISSVILSLQFKDYLYQSTRQRYPFTSLNKYCLKYQEYVEIPLASHFADEQVNLEHKVLTLSIDNMENISLIFACFLCTTSVFLFGILIQGIYLKGVSERTSIGRANIDKMKQIKLASINTRLNIETRKTIIL 761 HSP 2 Score: 81.2629 bits (199), Expect = 2.140e-15 Identity = 52/165 (31.52%), Postives = 83/165 (50.30%), Query Frame = 2 Query: 104 SLIVFDTYGTADIKN--GRLMLSAYLKYINAFDSTLGGFFACDF-DQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIF 589 SLI++D GT K G +++ YLK I+ F T G CDF D + CD FS++C+L Q MG R +DY +F VDSNE + V L C+ +S+ +N + + NL +++ ++ Y ++F + + GD +T G +GI+ Sbjct: 20 SLIIYDV-GTQVPKRQYGNAIITMYLKSIDVFYVTYGDITYCDFLYPKDSPNRWCDLMAFSQVCILRQDLMGHRTAKDYEGVNRRTFTVDSNENVNDEILNKVDLICSNISKYQFDQSNSMYFPNDNLYFMSTIDAPYADIFTFTNYMGDDYFTGRGYLEDYGIY 183 The following BLAST results are available for this feature:
BLAST of SMED30020913 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30020913 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30020913 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30020913 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30020913 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30020913 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30020913 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30020913 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30020913 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30020913 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30020913 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30020913 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30020913 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30020913 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30020913 ID=SMED30020913|Name=SMED30020913|organism=Schmidtea mediterranea sexual|type=transcript|length=2765bpback to top protein sequence of SMED30020913-orf-1 >SMED30020913-orf-1 ID=SMED30020913-orf-1|Name=SMED30020913-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=265bp MQNIIFPIIFVIINNCPQNGLSLIVFDTYGTADIKNGRLMLSAYLKYINAback to top protein sequence of SMED30020913-orf-2 >SMED30020913-orf-2 ID=SMED30020913-orf-2|Name=SMED30020913-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=570bp MQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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