SMED30020913

Overview
NameSMED30020913
Smed IDSMED30020913
Length (bp)2765
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30020913 (SMED30020913) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30020913 (SMED30020913) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30020913 (SMED30020913) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30020913 (SMED30020913) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30020913

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X2 cellSMED30020913h1SMcG0014581 SmedASXL_014503SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30020913h1SMcG0014581 dd_Smed_v4_13484_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30020913h1SMcG0014581 dd_Smed_v4_13484_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30020913h1SMcG0014581 dd_Smed_v4_13484_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30020913h1SMcG0014581 dd_Smed_v4_13484_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
cilated neuronSMED30020913h1SMcG0014581 dd_Smed_v4_13484_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30020913h1SMcG0014581 Contig53494newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30020913h1SMcG0014581 Contig53494uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
pharynx musculatureSMED30020913h1SMcG0014581 dd_Smed_v4_13484_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30020913 vs. Planmine SMEST
Match: SMESG000009078.1 (SMESG000009078.1)

HSP 1 Score: 701.049 bits (1808), Expect = 0.000e+0
Identity = 344/374 (91.98%), Postives = 345/374 (92.25%), Query Frame = 1
Query:  829 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQSIKHKDILDNFLAYLDKSAMVFYGSILSTPGQGRGNIFQVVSSSYPDKVFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGSIVQCSHNGFLQDEYETT 1950
            WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQ               +KSAMVFYGSILSTPGQGR              VFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGSIVQCSHNGFLQDEYETT
Sbjct:  239 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQ---------------NKSAMVFYGSILSTPGQGR--------------VFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGSIVQCSHNGFLQDEYETT 583          

HSP 2 Score: 441.81 bits (1135), Expect = 0.000e+0
Identity = 221/250 (88.40%), Postives = 221/250 (88.40%), Query Frame = 2
Query:   86 CPQNGLSLIVFD-TYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIFVSDSSSNYINFDKNLLLTVDRFLGELQTTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLYEPNVLPCQAYCNDG 832
            CPQNGLSLIVFD TYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIF                           TTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLYEPNVLPCQAYCN G
Sbjct:   16 CPQNGLSLIVFDKTYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIF---------------------------TTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLYEPNVLPCQAYCNVG 238          
BLAST of SMED30020913 vs. Planmine SMEST
Match: SMESG000009078.1 (SMESG000009078.1)

HSP 1 Score: 629.017 bits (1621), Expect = 0.000e+0
Identity = 310/340 (91.18%), Postives = 311/340 (91.47%), Query Frame = 1
Query:  829 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQSIKHKDILDNFLAYLDKSAMVFYGSILSTPGQGRGNIFQVVSSSYPDKVFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLR 1848
            WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQ               +KSAMVFYGSILSTPGQGR              VFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLR
Sbjct:  239 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQ---------------NKSAMVFYGSILSTPGQGR--------------VFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLR 549          

HSP 2 Score: 441.039 bits (1133), Expect = 0.000e+0
Identity = 221/250 (88.40%), Postives = 221/250 (88.40%), Query Frame = 2
Query:   86 CPQNGLSLIVFD-TYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIFVSDSSSNYINFDKNLLLTVDRFLGELQTTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLYEPNVLPCQAYCNDG 832
            CPQNGLSLIVFD TYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIF                           TTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLYEPNVLPCQAYCN G
Sbjct:   16 CPQNGLSLIVFDKTYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIF---------------------------TTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLYEPNVLPCQAYCNVG 238          
BLAST of SMED30020913 vs. Planmine SMEST
Match: SMESG000009052.1 (SMESG000009052.1)

HSP 1 Score: 328.561 bits (841), Expect = 2.769e-119
Identity = 173/477 (36.27%), Postives = 266/477 (55.77%), Query Frame = 1
Query:  829 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGIPENISTEVLFYEEFLEAEFDSQSIKHKDILDNFLAYLDKSAMVFYGSILSTPGQGRGNIFQVVSSSYPDKVFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGSIVQCSHNGFLQDEYETTVSYYKLAKSDYELREEGRKYLRIPYNLEHKGYKVICKVKGXXXXXXXXQFEIKNELSFNTRHRYIISESNKICLRFDSYVEMPTILKISQKGVTLAHLLFHLH 2259
            WL +Y    +       + C+++D C N L+   V+C  P+ CLPV N +Y+CE +          +N+++ V F+ E +    D   + + D+  N  A      + F   +L      R   F V      DK F  S  ++L +W R     + FRIYV PT +K+Y F+N + ++ YI+IGE I   S ++P YR + +W SK V      G  I I  +   G   ++C+  LI KGR   +++K F   V+ F++ EWN T+N++N  T I C A+A+ DF++ ++QL G S I    + I +    GG+YE +C+F++  G+QYS+YL FKLRV  S++C+F YAN+ GSI QC HNGF+QDEY   V++Y    S +E+  E  KYLRIPY+L H  YK+ C +  I NI  +I F +++ +  NTR  Y+I+  NK+CL  D YV+ P I +     +T+AH +F+ +
Sbjct:  249 WLTKYVSFTVQNKTEISITCETMDYCSNTLTSQFVDCNPPKICLPVSNTSYFCELVWTSFISKTTNKNLTSNVFFHGETIVVNIDKTYLTNSDVWYNTTATASDQQL-FQDYVLKHLFDERTLTFMVTEQIDIDKEFNISIKIHLNAWNRIYERQKLFRIYVPPTELKIYHFENLSEISDYIYIGENILANSTSSPLYRTLYIWNSKLVDVPNRLGRMIYINSSTYLGFVKLSCNSTLIVKGRESPWSYKDFPLIVRPFQFFEWNKTNNILNYGTVIKCQAKAFYDFKIIVVQLRGHSSIFTNTDVIKLSGILGGTYELICFFITDFGFQYSTYLEFKLRVHPSEVCWFPYANVRGSIFQCGHNGFIQDEYNIFVNFYVHEGSIWEVVLENEKYLRIPYHLSHANYKIQCSIVNIFNIKDNITFNMEHHILSNTRENYLITHPNKVCLANDYYVDPPKISENFDTSMTIAHYIFYFN 724          

HSP 2 Score: 121.709 bits (304), Expect = 2.769e-119
Identity = 69/245 (28.16%), Postives = 115/245 (46.94%), Query Frame = 2
Query:  107 LIVFDTYGTADIKNGRLMLSAYLKYINAFDSTLGGFFACDFDQYD--PAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIFVSDSSSNYINFDKNLLLTVDRFLGELQTTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCT-PLYEPNVLPCQAYCNDG 832
            L+++D     +I  G  +   YLK ++ F  + G    CDFD +      + CD  I+SR+C++ Q  +G R P+ YS  +  SF V  N +I+    I+    C  ++ +     N + +    L  L++    Y+++ Q++TF+GD ++   G    FGI+         N    +   V  +L    + M E++I+K  C   Y G  CWY C  + R+TC C   ++  NV PC   C  G
Sbjct:    5 LVIYDVDNGGNIVFGNAIAEIYLKALDVFYESYGPIKFCDFDTFRRYTKYRYCDLEIYSRICIMKQNLIGIRTPKYYSGLSMRSFSVTENRVISYNKKIEQEFNCGDIAHVTFDQQNSVYFPMDKLKYLSTVNGPYSDVTQITTFAGDGDFWGNGEFESFGIYSRRVEGFLTNLQTIMPYKVFTYLKVFDSKMYEEYIIKVVCSSKYYGSTCWYTCKDTYRITCNCVYSVFYVNV-PCNPTCKPG 248          
BLAST of SMED30020913 vs. Planmine SMEST
Match: SMESG000009055.1 (SMESG000009055.1)

HSP 1 Score: 356.681 bits (914), Expect = 1.028e-110
Identity = 195/549 (35.52%), Postives = 304/549 (55.37%), Query Frame = 1
Query:  829 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGI-PENISTEVLFYEEFLEAEFDSQSIKHKDILDNFLAYLDKSAMVFYGSILSTPGQGRGNIFQVVSSSYPDKVFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGSIVQCSHNGFLQDEYETTVSYYKLAKSDYELREEGRKYLRIPYNLEHKGYKVICKVKGXXXXXXXXQFEIKNELSFNTRHRYIISESNKICLRFDSYVEMPTILKISQKGVTLAHLLFHLHQNESFYFIVIPICLLMSAFPFIATGIITDIASMLHEESVLLKAQSXXXXXXXXXXALNDRLRKESRYPVAL 2472
            WLK+Y       F   I+ C++++VC N L+    NC  P+ CLPVDN TYYCEY+   +    +  +N+S ++ FY E +    D   + HKD+  N  A +     VF  SIL    +     F V++    D++  F+   NLK+WE  M   + FRI+ RP +V +YRFDN TP+  Y  IG+ +   S+A PQYR I+ W S  ++F FPFG  I IP ++  G     C+  LIT+ R++    K  + F+KLFEYL WNNT+N +  ++   C  ++ + ++L +IQ+ G  QI  T +YIT     GG Y FVCYFL+ +G+ YS+YL F+L+   S+IC FL+AN+ GSI+QC H+G+ QDEY T V+ Y    +D++   +G++YLRIPY +    Y+  C V+     ++ +  + K+ L  +TR RY  +  NK CL++  YVE+P     + + V L H +  L  +      +I  C L +   F+   +I  I      E   +   +  K++++++ ++N RL  E+R  + L
Sbjct:  125 WLKKYVNYIFKEFYEVILTCNTMNVCTNTLAKGSTNCLPPKTCLPVDNATYYCEYILPYIQSYEVHGKNLSDQIFFYNEIISVTLDEFILIHKDVAVNSTASIYYKQYVFETSILHYRFEILKPSFIVITDKVIDQLLNFTITFNLKAWEYVMEQTKMFRIFRRPEVVSIYRFDNKTPLMYYTLIGDTLFAISNALPQYRTIVHWISNFLEFPFPFGSLISIPTSSPLGHVKFMCNITLITQSRSMVSVTKTSSVFIKLFEYLRWNNTNNFLESSSVSQCQTKSNILYKLEVIQIQGDYQIITTSDYITTAGLPGGQYGFVCYFLTNIGFLYSAYLEFRLQFIVSKICTFLFANVHGSIIQCGHDGYNQDEYNTRVALYAWNGNDFQFAVDGKRYLRIPYQMHITLYRFHCTVQNKFISSVILSLQFKDYLYQSTRQRYPFTSLNKYCLKYQEYVEIPLASHFADEQVNLEHKVLTLSIDNMENISLIFACFLCTTSVFLFGILIQGIYLKGVSERTSIGRANIDKMKQIKLASINTRLNIETRKTIIL 673          
BLAST of SMED30020913 vs. Planmine SMEST
Match: SMESG000009055.1 (SMESG000009055.1)

HSP 1 Score: 357.066 bits (915), Expect = 6.896e-110
Identity = 195/549 (35.52%), Postives = 304/549 (55.37%), Query Frame = 1
Query:  829 WLKQYKEMQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQLRLTHPGI-PENISTEVLFYEEFLEAEFDSQSIKHKDILDNFLAYLDKSAMVFYGSILSTPGQGRGNIFQVVSSSYPDKVFYFSYILNLKSWERTMSIDRYFRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSKSVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVKLFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYITVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGSIVQCSHNGFLQDEYETTVSYYKLAKSDYELREEGRKYLRIPYNLEHKGYKVICKVKGXXXXXXXXQFEIKNELSFNTRHRYIISESNKICLRFDSYVEMPTILKISQKGVTLAHLLFHLHQNESFYFIVIPICLLMSAFPFIATGIITDIASMLHEESVLLKAQSXXXXXXXXXXALNDRLRKESRYPVAL 2472
            WLK+Y       F   I+ C++++VC N L+    NC  P+ CLPVDN TYYCEY+   +    +  +N+S ++ FY E +    D   + HKD+  N  A +     VF  SIL    +     F V++    D++  F+   NLK+WE  M   + FRI+ RP +V +YRFDN TP+  Y  IG+ +   S+A PQYR I+ W S  ++F FPFG  I IP ++  G     C+  LIT+ R++    K  + F+KLFEYL WNNT+N +  ++   C  ++ + ++L +IQ+ G  QI  T +YIT     GG Y FVCYFL+ +G+ YS+YL F+L+   S+IC FL+AN+ GSI+QC H+G+ QDEY T V+ Y    +D++   +G++YLRIPY +    Y+  C V+     ++ +  + K+ L  +TR RY  +  NK CL++  YVE+P     + + V L H +  L  +      +I  C L +   F+   +I  I      E   +   +  K++++++ ++N RL  E+R  + L
Sbjct:  213 WLKKYVNYIFKEFYEVILTCNTMNVCTNTLAKGSTNCLPPKTCLPVDNATYYCEYILPYIQSYEVHGKNLSDQIFFYNEIISVTLDEFILIHKDVAVNSTASIYYKQYVFETSILHYRFEILKPSFIVITDKVIDQLLNFTITFNLKAWEYVMEQTKMFRIFRRPEVVSIYRFDNKTPLMYYTLIGDTLFAISNALPQYRTIVHWISNFLEFPFPFGSLISIPTSSPLGHVKFMCNITLITQSRSMVSVTKTSSVFIKLFEYLRWNNTNNFLESSSVSQCQTKSNILYKLEVIQIQGDYQIITTSDYITTAGLPGGQYGFVCYFLTNIGFLYSAYLEFRLQFIVSKICTFLFANVHGSIIQCGHDGYNQDEYNTRVALYAWNGNDFQFAVDGKRYLRIPYQMHITLYRFHCTVQNKFISSVILSLQFKDYLYQSTRQRYPFTSLNKYCLKYQEYVEIPLASHFADEQVNLEHKVLTLSIDNMENISLIFACFLCTTSVFLFGILIQGIYLKGVSERTSIGRANIDKMKQIKLASINTRLNIETRKTIIL 761          

HSP 2 Score: 81.2629 bits (199), Expect = 2.140e-15
Identity = 52/165 (31.52%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  104 SLIVFDTYGTADIKN--GRLMLSAYLKYINAFDSTLGGFFACDF-DQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSNTTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLTSWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIF 589
            SLI++D  GT   K   G  +++ YLK I+ F  T G    CDF    D   + CD   FS++C+L Q  MG R  +DY      +F VDSNE +       V L C+ +S+     +N + +   NL  +++ ++ Y ++F  + + GD  +T  G    +GI+
Sbjct:   20 SLIIYDV-GTQVPKRQYGNAIITMYLKSIDVFYVTYGDITYCDFLYPKDSPNRWCDLMAFSQVCILRQDLMGHRTAKDYEGVNRRTFTVDSNENVNDEILNKVDLICSNISKYQFDQSNSMYFPNDNLYFMSTIDAPYADIFTFTNYMGDDYFTGRGYLEDYGIY 183          
The following BLAST results are available for this feature:
BLAST of SMED30020913 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020913 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000009078.10.000e+091.98SMESG000009078.1[more]
SMESG000009078.10.000e+091.18SMESG000009078.1[more]
SMESG000009052.12.769e-11936.27SMESG000009052.1[more]
SMESG000009055.11.028e-11035.52SMESG000009055.1[more]
SMESG000009055.16.896e-11035.52SMESG000009055.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30020913 ID=SMED30020913|Name=SMED30020913|organism=Schmidtea mediterranea sexual|type=transcript|length=2765bp
GTTTAGTTTCGATTAAAAATATTTATAATATTCACCATCGATGCAAAACA
TTATTTTCCCTATTATTTTTGTCATAATTAATAATTGTCCACAGAATGGA
TTAAGTTTGATCGTTTTTGATACCTATGGAACTGCAGATATCAAAAATGG
TAGATTAATGTTGTCCGCTTACCTGAAGTATATAAATGCCTTTGACTCTA
CGTTGGGAGGATTTTTCGCTTGTGATTTTGACCAGTACGATCCTGCGGCT
CAGATGTGCGACTATGCAATTTTTTCGAGAATGTGTCTTTTGTTGCAGAA
GTATATGGGAAAACGAAAACCGGAAGATTATAGTAGTAACACCACCACTT
CGTTTATTGTGGATAGTAATGAAATAATTACGATACCAACAAGCATCGAT
GTGGCACTTACATGCAATGCAGTTTCACGAATTGCACTCCCAAGTGCAAA
TGACCTTACTTATGAAGAACCAAATCTCTTACTACTTACGAGTTGGGAAT
CTAAATATACAAATCTATTTCAGCTATCAACATTTTCTGGTGATCTCAAC
TATACAAATTTTGGACCAAGATACAAATTTGGAATATTTGTGAGCGACTC
TTCGTCCAATTATATAAATTTTGACAAAAATCTTTTATTAACTGTTGACC
GCTTTCTTGGTGAATTACAGACTACCATGAGAGAACAATTTATCTTAAAA
ACAACGTGTGGGAGAAATTACGCTGGAAAAAAATGTTGGTATAGGTGTAC
GAGTTCTATCCGCATGACTTGTAAATGTACACCTCTATATGAGCCAAATG
TCTTACCGTGTCAGGCGTATTGTAACGATGGTTGAAACAATATAAAGAAA
TGCAAATAGATACATTTAATAATACTATTGTCAAGTGTGATTCAATAGAC
GTATGCGTTAATAAACTTAGTCCGATTGTCGTAAATTGTCCGGGTCCTAG
ATACTGTCTTCCAGTTGATAATAATACTTATTATTGTGAATATCTACAGT
TAAGATTGACACATCCCGGAATACCAGAAAATATTTCTACTGAAGTTTTG
TTTTATGAAGAATTTTTGGAAGCAGAATTTGATTCACAAAGTATCAAGCA
CAAGGATATTTTGGACAATTTCTTAGCATATTTAGACAAATCAGCAATGG
TCTTTTACGGCAGCATTTTATCAACGCCAGGCCAAGGGAGGGGTAATATT
TTTCAAGTTGTTAGCTCATCTTATCCCGATAAAGTGTTTTATTTTTCGTA
TATCTTGAATTTAAAATCTTGGGAAAGGACTATGTCCATAGACCGATATT
TCAGAATTTACGTAAGACCAACGCTTGTCAAAGTTTATCGGTTTGACAAT
AACACCCCTGTTAACACCTACATTCACATAGGGGAATTTATAACAGGGAA
ATCTGATGCAGCACCACAATACAGATTAATTATTCTTTGGAAAAGTAAAT
CTGTTCAATTTGGATTCCCTTTCGGTGACAAAATTCAAATTCCTCCGACA
GCGTTACCGGGAATAAGCACCATGAATTGTTCATGCATACTAATTACAAA
AGGTCGTAATATCACATACGCTTGGAAAATATTTACCTTTTTTGTAAAAC
TCTTCGAATATTTGGAATGGAATAATACAGATAACGTAATTAATGATAAT
ACGGCAATCGCGTGCTTGGCACAGGCATACGTTGATTTCCGTTTAAGTAT
TATTCAACTTCTCGGTCCGTCCCAAATTAAAGTGACCGACAATTACATAA
CCGTTGAAAGTTCTCAAGGTGGATCCTATGAATTCGTTTGTTACTTCCTT
TCAACACTGGGTTACCAATATTCCTCTTATCTAAATTTTAAACTACGAGT
TTTTGCCTCTCAGATCTGTTTCTTTTTATACGCAAATATAGCAGGATCTA
TTGTACAGTGTAGCCACAATGGCTTCCTTCAAGACGAATATGAAACAACA
GTTAGTTATTATAAACTAGCCAAATCTGACTATGAACTTAGAGAAGAGGG
TCGCAAATATCTTCGAATTCCATATAATTTAGAACATAAAGGCTACAAAG
TCATTTGCAAAGTAAAAGGCATAATTAACATCAACATATCCATCCAATTC
GAAATAAAGAATGAATTAAGTTTCAATACTCGCCACAGATATATTATCAG
TGAGTCCAATAAAATCTGTCTTCGTTTCGATTCATATGTTGAAATGCCAA
CAATACTCAAAATAAGCCAAAAGGGTGTCACGTTGGCTCATTTATTGTTC
CACTTACATCAAAATGAATCTTTTTACTTTATCGTGATTCCAATATGTCT
CTTAATGTCGGCATTTCCATTTATAGCAACTGGCATTATTACCGATATCG
CCTCTATGTTGCATGAAGAATCCGTTTTGTTGAAAGCTCAGAGCAAAAAG
AAAATTAGAAAATTGAGAATTAGAGCACTGAATGACAGACTTCGAAAAGA
ATCAAGATACCCAGTAGCCTTAAAAGGTCACGAAGACTTTTATAAGGAAA
GTTTCATAAATAAACGAGTTTCGGTTATCCAAATGTTAAGCAAATATGAA
TCATTTTAAATTAAATATGATTCTTGATATTAATTCTGAAGTGAAATTTT
ATTAAATGTAAATCGTAATAAATATTTAATAATTCATTTTATTAACAAAT
AACCACCTATAACCTGGTTAATGGTTGAAAGAATTTGTTTCAATAAAAGG
AAAAAAAAGAAATTAAACAAGATTCAAAGACTTATTTCGAAACTTGTATC
AGCAGATCGGAAGAG
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protein sequence of SMED30020913-orf-1

>SMED30020913-orf-1 ID=SMED30020913-orf-1|Name=SMED30020913-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=265bp
MQNIIFPIIFVIINNCPQNGLSLIVFDTYGTADIKNGRLMLSAYLKYINA
FDSTLGGFFACDFDQYDPAAQMCDYAIFSRMCLLLQKYMGKRKPEDYSSN
TTTSFIVDSNEIITIPTSIDVALTCNAVSRIALPSANDLTYEEPNLLLLT
SWESKYTNLFQLSTFSGDLNYTNFGPRYKFGIFVSDSSSNYINFDKNLLL
TVDRFLGELQTTMREQFILKTTCGRNYAGKKCWYRCTSSIRMTCKCTPLY
EPNVLPCQAYCNDG*
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protein sequence of SMED30020913-orf-2

>SMED30020913-orf-2 ID=SMED30020913-orf-2|Name=SMED30020913-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=570bp
MQIDTFNNTIVKCDSIDVCVNKLSPIVVNCPGPRYCLPVDNNTYYCEYLQ
LRLTHPGIPENISTEVLFYEEFLEAEFDSQSIKHKDILDNFLAYLDKSAM
VFYGSILSTPGQGRGNIFQVVSSSYPDKVFYFSYILNLKSWERTMSIDRY
FRIYVRPTLVKVYRFDNNTPVNTYIHIGEFITGKSDAAPQYRLIILWKSK
SVQFGFPFGDKIQIPPTALPGISTMNCSCILITKGRNITYAWKIFTFFVK
LFEYLEWNNTDNVINDNTAIACLAQAYVDFRLSIIQLLGPSQIKVTDNYI
TVESSQGGSYEFVCYFLSTLGYQYSSYLNFKLRVFASQICFFLYANIAGS
IVQCSHNGFLQDEYETTVSYYKLAKSDYELREEGRKYLRIPYNLEHKGYK
VICKVKGIININISIQFEIKNELSFNTRHRYIISESNKICLRFDSYVEMP
TILKISQKGVTLAHLLFHLHQNESFYFIVIPICLLMSAFPFIATGIITDI
ASMLHEESVLLKAQSKKKIRKLRIRALNDRLRKESRYPVALKGHEDFYKE
SFINKRVSVIQMLSKYESF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000099neuron
PLANA:0000478pharynx musculature
PLANA:0002111X2 cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 475..497