SMED30020814

Overview
NameSMED30020814
Smed IDSMED30020814
Length (bp)3218
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30020814 (SMED30020814) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30020814 (SMED30020814) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30020814 (SMED30020814) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30020814 (SMED30020814) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30020814

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 14

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30020814h1SMcG0008880 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30020814h1SMcG0008880 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30020814h1SMcG0008880 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30020814h1SMcG0008880 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30020814h1SMcG0008880 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30020814h1SMcG0008880 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30020814h1SMcG0020636 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30020814h1SMcG0020636 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30020814h1SMcG0020636 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30020814h1SMcG0020636 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30020814h1SMcG0020636 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30020814h1SMcG0020636 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30020814h1SMcG0008880 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
epidermisSMED30020814h1SMcG0020636 dd_Smed_v4_1097_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30020814 vs. Planmine SMEST
Match: SMESG000013157.1 (SMESG000013157.1)

HSP 1 Score: 311.612 bits (797), Expect = 3.160e-98
Identity = 149/175 (85.14%), Postives = 164/175 (93.71%), Query Frame = 3 
Query: 1851 NSWIDASRVIARFPAHSAARCRQAMWDAGFSISPVRETRGGIQGDSDEVDLAYVAIKREPKRNPAREMRGQAEYLMARLERHQAETNRQVEQARQYLQRVNEDIAAGRIPSTDGYAPPYNVSYELDDPRLQRRMPEMRVAVPRQILPKAMRNEDEVTELHREHSYARERYIQKRK 2375
            +SWIDASRVIARFPAHSAARCRQAMWDAGFSI PVRETRGG QGDS+EVDL+YVAIKREP R+PAREMRGQAEYL+ARLERHQAETNRQVEQARQYL+RVNEDIAAGRIPSTDGYAP YNVS+ELDDPRLQR+M EMRVAVPR ILPK MRNE+++ E  REHSYARER +++R+
Sbjct:   90 DSWIDASRVIARFPAHSAARCRQAMWDAGFSIFPVRETRGGTQGDSNEVDLSYVAIKREPGRSPAREMRGQAEYLLARLERHQAETNRQVEQARQYLRRVNEDIAAGRIPSTDGYAPQYNVSFELDDPRLQRQMSEMRVAVPRHILPKEMRNENDIAEPQREHSYARERNLKRRR 264
[Close]
BLAST of SMED30020814 vs. Planmine SMEST
Match: SMESG000063851.1 (SMESG000063851.1)

HSP 1 Score: 305.064 bits (780), Expect = 7.739e-97
Identity = 150/170 (88.24%), Postives = 158/170 (92.94%), Query Frame = 3 
Query: 1866 ASRVIARFPAHSAARCRQAMWDAGFSISPVRETRGGIQGDSDEVDLAYVAIKREPKRNPAREMRGQAEYLMARLERHQAETNRQVEQARQYLQRVNEDIAAGRIPSTDGYAPPYNVSYELDDPRLQRRMPEMRVAVPRQILPKAMRNEDEVTELHREHSYARERYIQKRK 2375
            ASRVIARFP HSAARCRQAMWDAGFSISPVRE RGG QGDSDEV L YVAIKRE  R+PARE+RGQAE+L+ARLE HQAETNRQVEQARQYLQRVNEDIAAG IPSTDGYAP YNVSYEL+DPRLQRRMPEMRVAVPR ILPK MRNEDE+TELHREHSYARERYI+KR+
Sbjct:   18 ASRVIARFPTHSAARCRQAMWDAGFSISPVREARGGTQGDSDEVYLPYVAIKRESGRSPAREIRGQAEHLLARLEHHQAETNRQVEQARQYLQRVNEDIAAGWIPSTDGYAPQYNVSYELNDPRLQRRMPEMRVAVPRHILPKEMRNEDEITELHREHSYARERYIKKRR 187
[Close]
BLAST of SMED30020814 vs. Planmine SMEST
Match: SMESG000036578.1 (SMESG000036578.1)

HSP 1 Score: 250.751 bits (639), Expect = 2.340e-77
Identity = 125/147 (85.03%), Postives = 132/147 (89.80%), Query Frame = 3 
Query: 2589 MTIRLISEMNSPQSSMLQRELDKAQAANRNLHHQLIQLTREIQ*IKGTWIEPKRAKIVYHRMEAAQKGWAGERQLTQNLKTQIKGLETALSASQEGAAVTYPLVFTLAQLAYRDTINPTAFKDNPSRYRPGRAEGAKRRRLKETGGL 3029
            MT RLISE NSPQ SMLQ ELDKAQAAN++LH QLIQLTREIQ IKGTWIEPKRAK+VY RMEAAQK WAG+RQLTQNLKTQIKGL+TALSASQEGAAVTYPLVF  AQLAYRDTINPT  KD PSR+RPG+AE AKRRRLKET GL
Sbjct:    1 MTNRLISERNSPQFSMLQLELDKAQAANQDLHQQLIQLTREIQQIKGTWIEPKRAKVVYQRMEAAQKEWAGKRQLTQNLKTQIKGLKTALSASQEGAAVTYPLVFAPAQLAYRDTINPTTSKDKPSRHRPGKAECAKRRRLKETDGL 147
[Close]
BLAST of SMED30020814 vs. Planmine SMEST
Match: SMESG000028747.1 (SMESG000028747.1)

HSP 1 Score: 243.432 bits (620), Expect = 7.221e-74
Identity = 113/141 (80.14%), Postives = 125/141 (88.65%), Query Frame = 3 
Query: 1803 MKHKFPLFPDIFFLLENSWIDASRVIARFPAHSAARCRQAMWDAGFSISPVRETRGGIQGDSDEVDLAYVAIKREPKRNPAREMRGQAEYLMARLERHQAETNRQVEQARQYLQRVNEDIAAGRIPSTDGYAPPYNVSYEL 2225
            MKH F L P++ FLLENSWIDASRVIARFPAHSAARCRQAMWDA FSISPVRE R   Q +SDEVDL YV IKREP RNPAREMRGQAEYL+ARLE+HQ ETN+QVE+ RQYL+++N DIAAG+IPSTDGYAPPYN+SYEL
Sbjct:    1 MKHNFQLLPNVSFLLENSWIDASRVIARFPAHSAARCRQAMWDARFSISPVREARSDKQRNSDEVDLPYVVIKREPGRNPAREMRGQAEYLLARLEKHQKETNKQVEKPRQYLRQINADIAAGKIPSTDGYAPPYNISYEL 141

HSP 2 Score: 63.1586 bits (152), Expect = 8.682e-11
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 3 
Query: 2841 GLETALSASQEGAAVTYPLVFTLAQLAYRDTINPTAFKDNPSRYRPGRAEGAKRR 3005
            GLE ALSA QE A+VTYPLVF  AQLAYR+    +     P + RPG++E AKRR
Sbjct:  142 GLEVALSACQEEASVTYPLVFAPAQLAYREAAATSTTTSRPIKRRPGKSERAKRR 196
[Close]
BLAST of SMED30020814 vs. Planmine SMEST
Match: SMESG000065931.1 (SMESG000065931.1)

HSP 1 Score: 242.662 bits (618), Expect = 8.371e-74
Identity = 117/179 (65.36%), Postives = 145/179 (81.01%), Query Frame = 3 
Query: 1833 IFFLLENSWIDASRVIARFPAHSAARCRQAMWDAGFSISPVRETRGGIQGDSDEVDLAYVAIKREPKRNPAREMRGQAEYLMARLERHQAETNRQVEQARQYLQRVNEDIAAGRIPSTDGYAPPYNVSYELDDPRLQRRMPEMRVAVPRQILPKAMRNEDEVTELHREHSYARERYIQK 2369
            I + LE+SWIDA RVIARFPAH+AARCRQAMWDAGFSIS VRETR G QG S++V+L YVAIKREP  N ARE+RGQAE+L+ RLE HQ ET RQ+ +AR+YL +VN+DIA GRIPSTDGYAP YNVS+ELDDP L  R+  M V +PR++LP+ +RN +E ++  ++HS+AR R  Q+
Sbjct:    7 IHYNLEDSWIDAPRVIARFPAHAAARCRQAMWDAGFSISTVRETRFGNQGSSEDVELPYVAIKREPGGNLAREIRGQAEFLLGRLEEHQKETERQIIKARRYLAQVNKDIAEGRIPSTDGYAPSYNVSFELDDPSLCNRLETMNVILPRRVLPRELRNVEENSDSRQDHSFARNRQSQR 185
The following BLAST results are available for this feature:
BLAST of SMED30020814 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30020814 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000013157.13.160e-9885.14SMESG000013157.1[more]
SMESG000063851.17.739e-9788.24SMESG000063851.1[more]
SMESG000036578.12.340e-7785.03SMESG000036578.1[more]
SMESG000028747.17.221e-7480.14SMESG000028747.1[more]
SMESG000065931.18.371e-7465.36SMESG000065931.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30020814 ID=SMED30020814|Name=SMED30020814|organism=Schmidtea mediterranea sexual|type=transcript|length=3218bp
CGACCGGTTCGATCCGGGGTAACGTAAAAAATAATTTCATTTTATTGACT
TGTATGCTTGTGGTCTATCATGTCGATTAAATTTGGTTCCGATATGCTTT
TTAAGATTTAATTCCTTTATGATGGAAGTTCAACAATTACGTCGAATTCT
TCGATCAAAAAAAAGTTTTTCCTTTAAAGCTTAGATGAAATAAATAAAGA
ATAAAAATCATAATAATCATTTCGTATTGCCATATCATATATACAAAAAA
AAATAAAATAAAATAAAATTACTTCGTTGCAATGACTAAAAATAATGTTT
GGTAAAATGAGTAATGACTAAAATGCATTAAATTTTGCTTAGCCAGCATC
GCCTTTTATACCATGGTTGTTTGTGTGTGTGTTTTGATGCAGTAAAACAA
GGAATTTCTCGAATATTCCAAAATTAATAAAATTTTTATTCTTTTTGATT
TAAATTTAAATTTTTTCATTTTTATGTATCAAAATTTTTCTTAAATTTTC
TTTATTTTATTTTTCTTTAAATTTTCCATTTTTATCTAATTTGAAATTTT
CTGCTCAAAACTACACAGGCGTTATCGTGCTGGTTAAACAAAAAATGGGC
TTCATCAGTTCTCGCCCAACACTATCTACGATGACCCGAAGACGAGATCG
ACCTGAAAATACAACTAAACTCACCGTGTCATGTAACACAAATATGCTCG
TTCGACTGATTTTTCTTTGAGTTCCTCAAACAGTTCCCTAAAAGAATAAA
TATTATGTACATTTAAAACAGATGAGCCATTCAAGTCGCTTCAAATGACC
AATACCCAACACCCGACTAAGTACCGTCATAAGCGTAAGGATATGAATCC
AATTTTCGCAGATCGTGTTGGCAGACGTAAGGAGTTCAAAGAACAAAAGA
CAAGTTACAATATTTGCTTTTACATTATATAACTTTTACTACCTTTCTAT
TGAACCCCAATAATGACAATGATGTGTAAGTTAATTTAGTAATATGTTTG
ATTGGAATCTTTAACTGATTGAATTTGAAAATTATAAGTTAATTGAGTTC
TCGATAGTCATGGCATTTGGTATTGCTATCCTAGTTAATCTAAACGTCGG
CGATAGTTTTATTCGTAAAATTGGAATTATAATTTGAATCTTGCGTGCGT
TAATTTGACCTTGGAAAGACCCAAAAGTGTATCTAAATAATAATTAATCT
TTATCCTCATTTGTAATTTATTGGTATAAAGTTTATCTACATAATAATTA
ATCTTTATCATCATCTGTAATTTATCAGCATAACGTTTATCTAAAAATTT
AAATAATTTTAATGTCGTTTGAAATTTTATTAGTACGAATAAAAAACGAT
TCGTAACGTTTTCTAGGAGAATTTATTGATTATGAAGAAAACTCATCGAT
TATAAAAGTAATTTTTAAACTATCATAACTAATTAGGGTGGATTGGCGTA
AGTAAATGGTATTAAAAATTAAACCTCTAATCACACTGCCGGCGATATGC
GAGAATTGGGAATCATTACTCGAGGACGACCCACTGTTAGGATACATTTA
GCAACATAAAACTAGCATACCACCACTACCACGACGGCAACCCTGACGGT
TCCTTTAAACGAACCAAATTGACTACGCTTATACTACAGGACCCGACAAC
TCAATCTTGATCCAGGCGTATATGCTGTACCCACACACGCCCCACAATAT
TGAGATTTACGAGTAAACGAGCCCTATAAACGGAGGAGACACCCCGCAAC
CTGGTAAATGAAATTGACAAACACTAAGTCCGAAGATTATCAGTCCGCAA
AAATGAAGCACAAGTTCCCATTATTTCCTGATATTTTTTTTCTTTTAGAA
AACTCGTGGATTGATGCATCCCGTGTTATTGCACGGTTCCCCGCTCACTC
GGCTGCCAGATGTAGGCAGGCGATGTGGGACGCGGGATTTTCTATATCTC
CAGTCCGCGAAACCCGAGGCGGCATACAGGGCGACTCCGACGAAGTGGAT
CTCGCGTATGTCGCAATTAAAAGGGAGCCCAAAAGAAATCCGGCGAGAGA
AATGCGAGGGCAGGCAGAGTATCTGATGGCACGCCTCGAACGACACCAAG
CCGAAACAAATCGGCAAGTAGAGCAGGCGAGACAATATCTCCAAAGGGTC
AACGAAGATATTGCGGCGGGCAGGATACCCAGTACTGACGGGTATGCCCC
GCCATATAATGTATCGTACGAATTAGACGATCCCAGACTCCAGAGACGAA
TGCCCGAAATGCGAGTAGCAGTTCCTCGACAAATTTTGCCGAAAGCAATG
AGAAATGAAGACGAGGTTACTGAACTCCATCGCGAACACTCTTACGCGAG
AGAGCGATACATCCAGAAAAGAAAAGAGTCGTTGAGAACATTTTGTGCAT
GATAATTTTAAGATAACCCCAATAAATGTGTTCATTTTCATGTTTTAAAC
TCTTATTAGAATTTTTTAAAGTTTTATTTAATTTGGTTACAACCTTAACT
ACCCGTTCACTAGAGTTGGACTTGTAAAATAATAGTCCAAGGTTCTTTCT
CGACAAAACTACTAATTGTTTTGTTTTAAATGAATATTATGACAATTCGT
CTCATTTCAGAAATGAACTCTCCACAATCCTCCATGCTACAACGGGAGCT
AGATAAAGCACAGGCGGCCAACCGGAATTTACACCATCAGTTAATCCAAC
TTACCAGGGAGATCCAGTAGATCAAAGGCACTTGGATCGAACCCAAGAGA
GCCAAGATCGTCTACCATAGGATGGAGGCCGCGCAAAAAGGTTGGGCCGG
CGAGAGACAGTTAACGCAAAACCTGAAGACCCAAATTAAAGGGTTAGAAA
CAGCCCTATCGGCGAGCCAAGAAGGGGCGGCGGTAACGTATCCGTTGGTC
TTCACCCTGGCGCAATTGGCTTATCGCGATACGATAAACCCAACTGCATT
TAAGGACAATCCCAGCCGATACCGGCCAGGAAGAGCCGAAGGCGCAAAAC
GTCGGCGACTCAAGGAAACTGGTGGATTGTAAATCTATGAACGCGAATTT
TCTTTTGTTATTGTTGTTCCTGTTAATAAAATAATGTCGTTGATAGTTTG
TATTATTAAGAGACCTAATTCATCAGACAGATTCGACGTGCAAATGTAAG
AAATCGAAACAACAAAGAATTGAAGAGTCACTTAGGGACCCAAATAAAAT
CTAAAGCGAGCACAGGCT
back to top

protein sequence of SMED30020814-orf-1

>SMED30020814-orf-1 ID=SMED30020814-orf-1|Name=SMED30020814-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=215bp
MKLTNTKSEDYQSAKMKHKFPLFPDIFFLLENSWIDASRVIARFPAHSAA
RCRQAMWDAGFSISPVRETRGGIQGDSDEVDLAYVAIKREPKRNPAREMR
GQAEYLMARLERHQAETNRQVEQARQYLQRVNEDIAAGRIPSTDGYAPPY
NVSYELDDPRLQRRMPEMRVAVPRQILPKAMRNEDEVTELHREHSYARER
YIQKRKESLRTFCA*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 31..47