60S acidic ribosomal protein P2
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30020749 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 15
Homology
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Human
Match: RPLP2 (ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]) HSP 1 Score: 50.8322 bits (120), Expect = 1.564e-8 Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 2 Query: 56 MRYIAAYMLCLL-NEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+A+Y+L L +P DI+ IL SVG+E D + + ++ + + K+I+ +I+ GI KL Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Human
Match: RPLP2 (ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]) HSP 1 Score: 50.8322 bits (120), Expect = 1.564e-8 Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 2 Query: 56 MRYIAAYMLCLL-NEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+A+Y+L L +P DI+ IL SVG+E D + + ++ + + K+I+ +I+ GI KL Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Celegans
Match: rla-2 (Ribosomal protein, Large subunit, Acidic (P1) [Source:UniProtKB/TrEMBL;Acc:Q9U1X9]) HSP 1 Score: 46.595 bits (109), Expect = 2.013e-7 Identity = 23/62 (37.10%), Postives = 39/62 (62.90%), Query Frame = 2 Query: 56 MRYIAAYMLCLLN-EKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY++AY+L +L PK D++NILS+VGV+ D + + + K+++ LI+ G + L Sbjct: 1 MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Celegans
Match: rla-2 (Ribosomal protein, Large subunit, Acidic (P1) [Source:UniProtKB/TrEMBL;Acc:Q9U1X9]) HSP 1 Score: 46.595 bits (109), Expect = 2.013e-7 Identity = 23/62 (37.10%), Postives = 39/62 (62.90%), Query Frame = 2 Query: 56 MRYIAAYMLCLLN-EKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY++AY+L +L PK D++NILS+VGV+ D + + + K+++ LI+ G + L Sbjct: 1 MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Fly
Match: RpLP2 (gene:FBgn0003274 transcript:FBtr0087105) HSP 1 Score: 60.4622 bits (145), Expect = 1.402e-12 Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEK-TPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L +L K +P SD+E ILSSVGVE D +T++ + KSID LI G KL Sbjct: 1 MRYVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Zebrafish
Match: rplp2 (ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]) HSP 1 Score: 56.6102 bits (135), Expect = 5.538e-11 Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEKT-PKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L +L T P DI+NIL SVG+E D + ++ + + K I+ +++AG+SKL Sbjct: 1 MRYVAAYLLAVLGGNTNPSAKDIKNILGSVGIEADDERLNKVVSELNGKDINEVMNAGLSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Zebrafish
Match: rplp2l (ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]) HSP 1 Score: 51.2174 bits (121), Expect = 8.589e-9 Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEK-TPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L L K +P DI+ IL SVG+E D ++++ + K+++ +I+ G SKL Sbjct: 1 MRYVAAYLLAALGGKDSPSTGDIKKILESVGIEADDVRMSKVVAELNGKNVEEVIAQGFSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Zebrafish
Match: rplp2l (ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]) HSP 1 Score: 51.2174 bits (121), Expect = 8.589e-9 Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEK-TPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L L K +P DI+ IL SVG+E D ++++ + K+++ +I+ G SKL Sbjct: 1 MRYVAAYLLAALGGKDSPSTGDIKKILESVGIEADDVRMSKVVAELNGKNVEEVIAQGFSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Xenopus
Match: rplp2 (ribosomal protein lateral stalk subunit P2 [Source:NCBI gene;Acc:549399]) HSP 1 Score: 55.4546 bits (132), Expect = 2.886e-10 Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 2 Query: 56 MRYIAAYMLCLLN-EKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L +L ++P +D+ ILSSVG+E D+ ++ +K KSID +I+ G +KL Sbjct: 1 MRYVAAYLLAVLGGTESPSIADLTKILSSVGIETDQQRAEKVVKELKGKSIDEVIAQGNTKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Xenopus
Match: RPLP2 (uncharacterized loc100135138 [Source:NCBI gene;Acc:100135138]) HSP 1 Score: 53.5286 bits (127), Expect = 1.387e-9 Identity = 24/62 (38.71%), Postives = 44/62 (70.97%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEKT-PKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L +L KT P +DI++IL SVG++ D V ++ + + K ++ ++++G++KL Sbjct: 1 MRYVAAYLLAVLGGKTSPSANDIKSILKSVGIDADDERVKKVISELSGKDLEDVVNSGLAKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Mouse
Match: AC124742.1 (ribosomal protein, large P2 (Rplp2), retrogene) HSP 1 Score: 50.8322 bits (120), Expect = 1.231e-8 Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 2 Query: 56 MRYIAAYMLCLL-NEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+A+Y+L L +P DI+ IL SVG+E D + + ++ + + K+I+ +I+ G+ KL Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILGSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Mouse
Match: Rplp2 (ribosomal protein, large P2 [Source:MGI Symbol;Acc:MGI:1914436]) HSP 1 Score: 50.447 bits (119), Expect = 1.689e-8 Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 2 Query: 56 MRYIAAYMLCLL-NEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+A+Y+L L +P DI+ IL SVG+E D + + ++ + + K+I+ +I+ G+ KL Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Mouse
Match: Rplp2 (ribosomal protein, large P2 [Source:MGI Symbol;Acc:MGI:1914436]) HSP 1 Score: 50.447 bits (119), Expect = 1.689e-8 Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 2 Query: 56 MRYIAAYMLCLL-NEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+A+Y+L L +P DI+ IL SVG+E D + + ++ + + K+I+ +I+ G+ KL Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Mouse
Match: Rplp2 (ribosomal protein, large P2 [Source:MGI Symbol;Acc:MGI:1914436]) HSP 1 Score: 50.447 bits (119), Expect = 1.689e-8 Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 2 Query: 56 MRYIAAYMLCLL-NEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+A+Y+L L +P DI+ IL SVG+E D + + ++ + + K+I+ +I+ G+ KL Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. UniProt/SwissProt
Match: sp|P05389|RLA2_DROME (60S acidic ribosomal protein P2 OS=Drosophila melanogaster OX=7227 GN=RpLP2 PE=1 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 1.405e-11 Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEK-TPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L +L K +P SD+E ILSSVGVE D +T++ + KSID LI G KL Sbjct: 1 MRYVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKL 62
BLAST of 60S acidic ribosomal protein P2 vs. UniProt/SwissProt
Match: sp|O61463|RLA2_CRYST (60S acidic ribosomal protein P2 OS=Cryptochiton stelleri OX=6655 PE=3 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 3.860e-11 Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 2 Query: 56 MRYIAAYMLCLL--NEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAYML L NEK P SD++ IL SVG+E +K+ +T++ N +K K++D +I+ G KL Sbjct: 1 MRYVAAYMLATLGGNEK-PSESDLKKILDSVGIEVEKDQLTKVINELKGKNLDEVIAEGEKKL 62
BLAST of 60S acidic ribosomal protein P2 vs. UniProt/SwissProt
Match: sp|P02399|RLA2_ARTSA (60S acidic ribosomal protein P2 OS=Artemia salina OX=85549 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 9.785e-11 Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEKT-PKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L L+ P +DIE ILSSVG+EC+ + + ++ N +K K +++LI+ G +KL Sbjct: 1 MRYVAAYLLAALSGNADPSTADIEKILSSVGIECNPSQLQKVMNELKGKDLEALIAEGQTKL 62
BLAST of 60S acidic ribosomal protein P2 vs. UniProt/SwissProt
Match: sp|Q06383|RLA2_LEIIN (60S acidic ribosomal protein P2-1 OS=Leishmania infantum OX=5671 GN=LIP PE=2 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 2.567e-10 Identity = 24/61 (39.34%), Postives = 40/61 (65.57%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 M+Y+AAY L L+ KTP +D++ +L + GV D + V +F ++ KS D+L++ G +KL Sbjct: 1 MQYLAAYALVALSGKTPSKADVQAVLKAAGVAVDASRVDAVFQEVEGKSFDALVAEGRTKL 61
BLAST of 60S acidic ribosomal protein P2 vs. UniProt/SwissProt
Match: sp|P08094|RLA2_SCHPO (60S acidic ribosomal protein P2-alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpp201 PE=1 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 6.111e-10 Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEK-TPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 M+Y+AAY+L + K +P SDIE++LS+VG+E + + L N + K ID LI+AG KL Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKL 62
BLAST of 60S acidic ribosomal protein P2 vs. TrEMBL
Match: A0A182Q3T5 (Uncharacterized protein OS=Anopheles farauti OX=69004 PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.852e-12 Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 2 Query: 56 MRYIAAYMLCLLN-EKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L +L TP SDIE ILSSVG+E D VT++ N +K+KSI+ LI++G KL Sbjct: 1 MRYVAAYLLAVLGGNATPSNSDIEKILSSVGIEADSTRVTKVVNELKDKSIEELIASGREKL 62
BLAST of 60S acidic ribosomal protein P2 vs. TrEMBL
Match: A0A024US91 (Uncharacterized protein OS=Aphanomyces invadans OX=157072 GN=DYB32_003539 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.544e-12 Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L L ++ KP+D++N+L S GVE D + +LF I +KSID +I+AG SKL Sbjct: 1 MRYVAAYLLVALAKEDVKPADVKNVLKSAGVEVDAERLEKLFEDIADKSIDEIIAAGSSKL 61
BLAST of 60S acidic ribosomal protein P2 vs. TrEMBL
Match: A2I3Z6 (Ribosomal protein P2-like protein OS=Maconellicoccus hirsutus OX=177089 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.878e-11 Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAYML L K P+ +DIE ILSSVG+E D + + ++ +K K++D L+++G KL Sbjct: 1 MRYVAAYMLSALTGKEPQSADIERILSSVGIEADNDKIQKVIKELKGKNVDELVASGRGKL 61
BLAST of 60S acidic ribosomal protein P2 vs. TrEMBL
Match: A0A0K8TQF0 (Putative 60s acidic ribosomal protein p2 OS=Tabanus bromius OX=304241 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 2.670e-11 Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEK-TPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAYML +L K +P PSDIE ILSSVG+E DK ++++ + +K K+I+ LI+ G KL Sbjct: 1 MRYVAAYMLAVLGGKDSPAPSDIEKILSSVGIEADKERLSKVCDELKGKNIEELIAQGREKL 62
BLAST of 60S acidic ribosomal protein P2 vs. TrEMBL
Match: A0A182U088 (Uncharacterized protein OS=Anopheles melas OX=34690 PE=3 SV=2) HSP 1 Score: 65.855 bits (159), Expect = 3.240e-11 Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 2 Query: 56 MRYIAAYMLCLLN-EKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKLXXXXXXXXXXXXXXXXXXXXXXXXTKVXXXXXXXXXXXXXXXDMGFGLFD 388 MRY+AAY+L +L +P SDIE ILSSVG+E D VT++ N +K+KSI+ LI++G KL+++PAGG A A + A G E+ + +KE S + DMGFGLF+ Sbjct: 1 MRYVAAYLLAVLGGNASPSNSDIEKILSSVGIEADSTRVTKVVNELKDKSIEELIASGREKLSSMPAGGGAAAAAPAAAGGGGGAAPAAEKKEEKKEESESEDDDMGFGLFE 112
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Cavefish
Match: rplp2 (60S acidic ribosomal protein P2-like [Source:NCBI gene;Acc:103029731]) HSP 1 Score: 53.5286 bits (127), Expect = 7.181e-10 Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEKT-PKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L +L T P DI+NIL SVG+E + ++ + + K I+ +++AG+SKL Sbjct: 1 MRYVAAYLLAVLGGNTSPSAKDIKNILGSVGIEASDERLNKVVSELNGKDINEVMNAGLSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Cavefish
Match: rplp2l (ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]) HSP 1 Score: 44.2838 bits (103), Expect = 2.319e-6 Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEK-TPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKLXXXXXXXXXXXXXXXXXXXXXXXXTKVXXXXXXXXXXXXXXXDMGFGLFD 388 MRY+AAY+L L+ K P +DI+ IL SVG+E D+ + ++ + + K ++ +I A KLA+VP+GGA S+A AAG A E+ + +KE S ES+ DMGFGLFD Sbjct: 1 MRYVAAYLLAALSGKDNPSSNDIKKILESVGIEVDETRMGKVVSELNGKKVEDVI-AQYGKLASVPSGGAVAVASSAAPAAGGAAAPAEEKKEEKKEESEESDDDMGFGLFD 111
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Sea Lamprey
Match: rplp2 (ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]) HSP 1 Score: 55.0694 bits (131), Expect = 4.538e-11 Identity = 27/64 (42.19%), Postives = 46/64 (71.88%), Query Frame = 2 Query: 53 KMRYIAAYMLCLL--NEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 +MRY+AAY+L L NE+ P DI+ IL SVG+E D + ++++ + +K K+++ +ISAG +K+ Sbjct: 2 RMRYVAAYLLATLGGNEQ-PTAIDIKKILGSVGIEADDSKLSKVISELKGKNVEEVISAGFTKI 64
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Nematostella
Match: EDO47503 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RLY2]) HSP 1 Score: 57.7658 bits (138), Expect = 7.539e-12 Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 2 Query: 56 MRYIAAYMLCLL-NEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L L N K P DI+ IL SVG+E D + ++ + + KS+D +I AG SKL Sbjct: 1 MRYVAAYLLATLGNNKNPSAKDIKGILDSVGIESDMERLNKVISELSGKSVDEIIQAGKSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Medaka
Match: lin7c (60S acidic ribosomal protein P2 [Source:NCBI gene;Acc:101168608]) HSP 1 Score: 54.6842 bits (130), Expect = 3.363e-10 Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 2 Query: 56 MRYIAAYMLCLLN-EKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L L P+ DI+ IL SVG+E D + ++ + +K K+++ +I+AG SKL Sbjct: 1 MRYVAAYLLAALGGNGNPEAGDIKKILDSVGIEADSERLGKVLSELKGKNVEEVIAAGYSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Medaka
Match: lin7c (60S acidic ribosomal protein P2 [Source:NCBI gene;Acc:101168608]) HSP 1 Score: 56.9954 bits (136), Expect = 3.621e-10 Identity = 26/64 (40.62%), Postives = 43/64 (67.19%), Query Frame = 2 Query: 50 IKMRYIAAYMLCLLN-EKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 ++MRY+AAY+L L P+ DI+ IL SVG+E D + ++ + +K K+++ +I+AG SKL Sbjct: 171 VRMRYVAAYLLAALGGNGNPEAGDIKKILDSVGIEADSERLGKVLSELKGKNVEEVIAAGYSKL 234
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Medaka
Match: lin7c (60S acidic ribosomal protein P2 [Source:NCBI gene;Acc:101168608]) HSP 1 Score: 54.6842 bits (130), Expect = 4.053e-10 Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 50 IKMRYIAAYMLCLLN-EKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 I MRY+AAY+L L P+ DI+ IL SVG+E D + ++ + +K K+++ +I+AG SKL Sbjct: 16 ITMRYVAAYLLAALGGNGNPEAGDIKKILDSVGIEADSERLGKVLSELKGKNVEEVIAAGYSKL 79
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Medaka
Match: rplp2 (60S acidic ribosomal protein P2 [Source:NCBI gene;Acc:101170669]) HSP 1 Score: 53.9138 bits (128), Expect = 5.478e-10 Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEKT-PKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L L T P DI++IL SVG+E D + ++ + K+I+ ++++G+SKL Sbjct: 1 MRYVAAYLLAALGGNTSPSAKDIKDILGSVGIEADDERLNKVIGELNGKNINEVVNSGLSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Medaka
Match: rplp2 (60S acidic ribosomal protein P2 [Source:NCBI gene;Acc:101170669]) HSP 1 Score: 53.9138 bits (128), Expect = 5.478e-10 Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEKT-PKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKL 238 MRY+AAY+L L T P DI++IL SVG+E D + ++ + K+I+ ++++G+SKL Sbjct: 1 MRYVAAYLLAALGGNTSPSAKDIKDILGSVGIEADDERLNKVIGELNGKNINEVVNSGLSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Planmine SMEST
Match: SMESG000057890.1 (SMESG000057890.1) HSP 1 Score: 132.109 bits (331), Expect = 1.143e-40 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKLXXXXXXXXXXXXXXXXXXXXXXXXTKVXXXXXXXXXXXXXXXDMGFGLFD 388 MRYIAAYMLCLLNEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKLATVPAGGAAVAPSAAPLAAGAAQVTKVEEAKAEKESSSESEADMGFGLFD Sbjct: 1 MRYIAAYMLCLLNEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKLATVPAGGAAVAPSAAPLAAGAAQVTKVEEAKAEKESSSESEADMGFGLFD 111
BLAST of 60S acidic ribosomal protein P2 vs. Planmine SMEST
Match: SMESG000057890.1 (SMESG000057890.1) HSP 1 Score: 114.39 bits (285), Expect = 8.611e-34 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 2 Query: 77 MLCLLNEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKLXXXXXXXXXXXXXXXXXXXXXXXXTKVXXXXXXXXXXXXXXXDMGFGLFD 388 MLCLLNEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKLATVPAGGAAVAPSAAPLAAGAAQVTKVEEAKAEKESSSESEADMGFGLFD Sbjct: 1 MLCLLNEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKLATVPAGGAAVAPSAAPLAAGAAQVTKVEEAKAEKESSSESEADMGFGLFD 104
BLAST of 60S acidic ribosomal protein P2 vs. Planmine SMEST
Match: SMESG000009232.1 (SMESG000009232.1) HSP 1 Score: 54.299 bits (129), Expect = 3.273e-10 Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = 2 Query: 56 MRYIAAYMLCLLNEKT-PKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKLXXXXXXXXXXXXXXXXXXXXXXXXTKVXXXXXXXXXXXXXXXDMGFGLFD 388 MRY+++Y+L +L P+ DI IL++VG+ECD N E AI + ++ LIS G+ K+++VP GGA AP+AA +A A + +A A++ SS E DMGFGLFD Sbjct: 1 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKISSVPTGGAGAAPTAATSSAPAPAAKEEVKAAAKESSSESEEGDMGFGLFD 112 The following BLAST results are available for this feature:
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of 60S acidic ribosomal protein P2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of 60S acidic ribosomal protein P2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of 60S acidic ribosomal protein P2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30020749 ID=SMED30020749|Name=60S acidic ribosomal protein P2|organism=Schmidtea mediterranea sexual|type=transcript|length=415bpback to top protein sequence of SMED30020749-orf-1 >SMED30020749-orf-1 ID=SMED30020749-orf-1|Name=SMED30020749-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=112bp MRYIAAYMLCLLNEKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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