SMED30020747

Overview
NameSMED30020747
Smed IDSMED30020747
Length (bp)2206
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30020747 (SMED30020747) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30020747 (SMED30020747) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30020747 (SMED30020747) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30020747 (SMED30020747) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30020747

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30020747h1SMcG0022635 SmedASXL_014189SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30020747h1SMcG0022635 dd_Smed_v4_10194_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30020747h1SMcG0022635 dd_Smed_v6_10194_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30020747 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.005515:14240..22479 +10834
Homology
BLAST of SMED30020747 vs. TrEMBL
Match: A0A5K3FC88 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.027e-47
Identity = 111/317 (35.02%), Postives = 163/317 (51.42%), Query Frame = 1
Query: 1087 CEDVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQL-GPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSE---------YVCENSDETIKLYQ---------LSKLDLDTLENPPD------------NGSLVGRD--LEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNV 1938
            C  ++  R++L    T+ESER   + QFAQH+ V+YEYQIG L+ +  V     +V DL++K+I++  IT  +  +L   +       P S  K VKT  + G G + SWR+ D+++R GLRHN VGG++C NL I THF A       + RPDIYGYRN+I +   E              S  T+ +Y          LS  D+     PPD            + S + R   ++     H H+ Y+ +FF+I +R  +IDHL  C+SF  FC R+ ICPVM ++   + F  +    L Q FD+  ++TN  V
Sbjct:   60 CSGIERNRVILFLKSTTESERKRCLIQFAQHMCVVYEYQIGFLQGLKAVHSAADYVADLLLKSIQIGRITSFSPSELTLQLLHDVRCKPSSQMKCVKTSPMTGTGEQLSWRLGDIWTRPGLRHNEVGGENCHNLNIVTHFLAPCLPDLETKRPDIYGYRNLIVLPTVESNILLSGESIYANASSNTVTVYTNCNSEAKECLSCFDI----FPPDEDLITLQHVGSVDSSPIRRTDVIKRHQRQHLHRAYRPVFFVIYERPSVIDHLTECESFAAFCKRQNICPVMFLNQETDLFEGRVCVNLFQHFDIFCLTTNGYV 372          
BLAST of SMED30020747 vs. TrEMBL
Match: A0A068WDA6 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EgrG_000799200 PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.769e-44
Identity = 109/349 (31.23%), Postives = 175/349 (50.14%), Query Frame = 1
Query: 1093 DVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQL-GPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSEY------VCENS----------------------------DETIK-------------LYQLSKLDLDTLENPPDNGSLVGR-----------DLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGDGKPDE 1962
            D++ +R+L I   T+ES+R   I +FAQH+ ++YEYQIG L+ +  V     +V +++I++I+   I+  +  +L   +   +   P S +K +KT  + G G + SWR+ ++++R GLRHN VGG++C NL I THF A   +     RPDIYGYRN+I + N+E       V EN+                            +ETI              L ++ K+D  +  +P   G ++ R                   H H+ Y+ +FF+I +R  +IDHL  C+SF  FC R+ ICPVM ++   + F  +  ++L Q FD+  ++T N  +    PDE
Sbjct:   63 DIEQSRILSILRSTTESDRKISIHRFAQHLCIVYEYQIGFLQGLKAVHSAADYVAEVLIRSIQSGRISSFSPNELTLQLLHDSGCRPSSQTKCIKTSPMTGTGEQLSWRLGEIWTRPGLRHNEVGGENCHNLNIVTHFLAPCSTELEIKRPDIYGYRNLIVLPNTEPSTFFSDVYENANLNGATVFTNDSSIMGARSGYYDIFVPDEETIAVSNIRTGSRVRSPLSKVQKID-KSPSSPVRRGDVIKRQQGIKSKSPLLSTSVNLRQHLHRAYRPVFFVIYERPSVIDHLTECESFAAFCKRQNICPVMFLNQETDLFEGRVCTSLFQNFDIFCLTT-NGYMSKALPDE 409          
BLAST of SMED30020747 vs. TrEMBL
Match: A0A068Y6K4 (Uncharacterized protein OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000799200 PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 8.037e-44
Identity = 107/340 (31.47%), Postives = 172/340 (50.59%), Query Frame = 1
Query: 1093 DVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQL-GPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSE-------YVCENS----------------------------DETIK-------------LYQLSKLDLDTLENPPDNGSLVGR-----------DLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNN 1932
            D++ +R+L I   T+ES+R   I +FAQH+ ++YEYQIG L+ +  V     +V +++I++I+   I+ L+  +L   +   +   P S +K +KT  + G G + SWR+ ++++R GLRHN VGG++C NL I THF A   +     RPDIYGYRN+I + N+E        V ENS                            +ETI              L ++ K+D  +  +P   G ++ R                   H H+ Y+ +FF+I +R  +IDHL  C+SF  FC R+ +CPVM ++   + F  +  ++L Q FD+  ++TN 
Sbjct:   63 DIEQSRILSILRSTTESDRKISIYRFAQHLCIVYEYQIGFLQGLKAVHCAADYVAEVLIRSIQSGRISSLSPNELTLQLLHDSGCRPSSQTKCIKTSPMTGTGEQLSWRLGEIWTRPGLRHNEVGGENCHNLNIVTHFLAPCSTKLEIKRPDIYGYRNLIVLPNTEPSTFFSDNVYENSNLNGATVLTNDSSIMRARSGYYDIFVPDEETIAVSNIRTGSRVRSPLSKVQKID-KSPSSPVRRGDIIKRQQGLKSKSPLLSTSVNLRQHLHRAYRPVFFVIYERPSVIDHLTECESFAAFCKRQNVCPVMFLNQETDLFEGRVCTSLFQNFDIFCLTTNG 401          
BLAST of SMED30020747 vs. TrEMBL
Match: A0A4S2L5X1 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009699 PE=4 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 4.483e-42
Identity = 145/539 (26.90%), Postives = 221/539 (41.00%), Query Frame = 1
Query:  778 NRHQILRNIKWFVKQLCSIFEETLQSKLYKSKLS-------------PANLNIKIDV-------NCLP-----------QNYKLSPA------------------KQLTTIHKPNWCRSLTNSPIMRRFT------------PMRSSRGSTPVKKFSIPPHHLKCEDVQLTRLLL------------------------------IYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQLGPGTE-FSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAI-------------ENSEYVCENSDETIKLYQLSKLDLDTL-----------ENPPDNGSLVGRDLEEQCM---------------------------------DHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGD 1947
            NR +IL N+KWFV +    FE  L   L +   S             P N ++++D        N LP           Q  K+SPA                  KQ + + +    RSLTNSP+ RR +            P +   GS+ V+  +    HL       T  LL                               Y QT+ES+R   I  FAQ + +IYEYQ+ ML+ ++ +     +VVD+++KAI++  I      +L P + F     P S  K VKT+ L    E  +WR+ ++++ +GLRHN VGG++C NL+I THF + S +A    R DIYGYRN+I                +S+    + + +   Y ++  D  T+           E P  NG     D +E  +                                  H H+ Y+ +FF+I +R  +I+HL  CDSF  FC R+ + PVM ++     F  +    + Q FD+ +V+ +  V  D
Sbjct:    6 NREKILLNLKWFVHRTVKSFEGKLTHALSRQASSGNISSTRSSPVRAPVN-HLRVDAPPLLSENNELPLLRQLLEDQFHQQSKMSPAVESCHQSDLLTKKRNAASKQKSPLMR---IRSLTNSPLFRRLSFTSSSQSHDLVSPEKFQDGSSEVQDEA----HLDGYSNSTTEKLLQWPCSSNPQSPTDLAILRRFPIQASCQLYSFYEQTNESQRCKWISTFAQQLCIIYEYQLSMLRGLTAIHAAADYVVDVVLKAIKLGKIKATTGERLTPMLLFDEDCRPSSYCKCVKTIPLAITNEQLTWRLGEIWTLAGLRHNEVGGENCHNLSIVTHFLSASSAAEGYSRSDIYGYRNLILFFRGSQEIEDNMNGSDSKQKTSSHNSSQSYYDIASNDFLTISSSKVKTGIAGETPKKNGYSGISDSQESPIPSNVSNYPKASPELSSFQHGRKQTHMSGASTIRQHLHRAYRPVFFVIYNRPSVIEHLTECDSFAAFCKRQSLSPVMFLNQPTSIFDEKPYPCVYQYFDLFNVTVSGYVGAD 536          
BLAST of SMED30020747 vs. TrEMBL
Match: W6VD49 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EGR_00143 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.698e-42
Identity = 103/325 (31.69%), Postives = 168/325 (51.69%), Query Frame = 1
Query: 1093 DVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQL-GPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSEY------VCENS----------------------------DETIKLYQLSKLDLDTLENPPDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGDGKPDE 1962
            D++ +R+L I   T+ES+R   I +FAQH+ ++YEYQIG L+ +  V     +V +++I++I+   I+  +  +L   +   +   P S +K +KT  + G G + SWR+ ++++R GLRHN VGG++C NL I THF A   +     RPDIYGYRN+I + N+E       V EN+                            +ETI + ++ K    +  +P   G ++ R      ++          F+I +R  +IDHL  C+SF  FC R+ ICPVM ++   + F  +  ++L Q FD+  ++T N  +    PDE
Sbjct:   62 DIEQSRILSILRSTTESDRKISIHRFAQHLCIVYEYQIGFLQGLKAVHSAADYVAEVLIRSIQSGRISSFSPNELTLQLLHDSGCRPSSQTKCIKTSPMTGTGEQLSWRLGEIWTRPGLRHNEVGGENCHNLNIVTHFLAPCSTELEIKRPDIYGYRNLIVLPNTEPSTFFSDVYENANLNGATVFTNDSSIMGARSGYYDIFVPDEETIAVQKIDK----SPSSPVRRGDVIKRQQGSTSIEP----IDPFSFVIYERPSVIDHLTECESFAAFCKRQNICPVMFLNQETDLFEGRVCTSLFQNFDIFCLTT-NGYMSKALPDE 377          
BLAST of SMED30020747 vs. Planmine SMEST
Match: SMESG000037087.1 (SMESG000037087.1)

HSP 1 Score: 919.457 bits (2375), Expect = 0.000e+0
Identity = 442/443 (99.77%), Postives = 442/443 (99.77%), Query Frame = 1
Query:  745 MSSDVTNIKCANRHQILRNIKWFVKQLCSIFEETLQSKLYKSKLSPANLNIKIDVNCLPQNYKLSPAKQLTTIHKPNWCRSLTNSPIMRRFTPMRSSRGSTPVKKFSIPPHHLKCEDVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQLGPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSEYVCENSDETIKLYQLSKLDLDTLENPPDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGDGKPDELCISRNHSRPDNKGDDFTDVETKGLLTKVYDNPAFVC 2073
            MSSDVTNIKCANRHQILRNIKWFVKQLCSIFEETLQSKLYKSKLSPANLNIKIDVNCLPQNYKLSPAKQLTTIHKPNWCRSLTNSPIMRRFTPMRSSRGSTPVKKFSIPPHHLKCEDVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQLGPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSEYVCENSDETIKLYQLSKLDLDTLENPPDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGDGKPDELCISRNHSRPDNKGDDFTD ETKGLLTKVYDNPAFVC
Sbjct:    1 MSSDVTNIKCANRHQILRNIKWFVKQLCSIFEETLQSKLYKSKLSPANLNIKIDVNCLPQNYKLSPAKQLTTIHKPNWCRSLTNSPIMRRFTPMRSSRGSTPVKKFSIPPHHLKCEDVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQLGPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSEYVCENSDETIKLYQLSKLDLDTLENPPDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGDGKPDELCISRNHSRPDNKGDDFTDDETKGLLTKVYDNPAFVC 443          
BLAST of SMED30020747 vs. Planmine SMEST
Match: SMESG000069112.1 (SMESG000069112.1)

HSP 1 Score: 256.144 bits (653), Expect = 3.468e-77
Identity = 165/434 (38.02%), Postives = 244/434 (56.22%), Query Frame = 1
Query:  787 QILRNIKWFVKQLCSIFEETLQSKLYKSKLS-PANLNIKIDVNCLPQNYKLSPAKQLTTIHKPNWCRSLTNSPIMRRFTPMRSSRGSTPVKKFSIPPHHLKCEDVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQLG-PGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIEN---SEYVCENSDETIKLYQLSKLDLDTLENP-PDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVS-TNNNVIGDGKPDELCISRNHSRPDNKGDDF-TDVETKGLLTKVYDNPA 2064
            +IL N+KWFVKQ C +FEE L+    K +L    +L +    N  P    LS + Q T  H  +W  SLTNSP+++R + ++   GS PVKK     +  +   + ++RL L+   TS+SER   +++F +HV V+YEYQIGML S+  V  VV +VVDL++KAI+   +  L+S QLNPTI F +  +PKSGSK+VKT+ +       +WR+S++F+  GLRHN+VGG+DCSNL+I TH          S RPDIYGYRN+I +     S+   + ++     Y++S  D  T+ +   ++            +DH HKCYKS+FF+I DR  +I+HL  C SFRVFC +E I P+M ++   E        +L   FD+ ++  T N      +P  + +S +H   DN   D  +D +   + T     P 
Sbjct:   10 KILLNLKWFVKQFCRLFEEKLERHCTKHQLKMTQSLLVGEPANGEPCISPLSSSTQSTPKH-ASWTHSLTNSPLVKRLSALQRHSGS-PVKK----SNSFRSSAINISRLTLLKESTSQSEREKHLKRFGEHVSVVYEYQIGMLSSLQSVSVVVIYVVDLLLKAIKKGVLMGLDSAQLNPTILFDSTVMPKSGSKLVKTVGIRIHSNSLTWRVSNIFTHPGLRHNQVGGEDCSNLSIVTHLLTGFCPFGESRRPDIYGYRNLIVVPKRRISKKTEKGTNCNQTAYEISLYDSATISHARTNSTESTPTTSTNSLLDHIHKCYKSIFFVIFDRPTVIEHLMTCQSFRVFCTKELITPIMFLNAFNEITVKSCHKSLFHNFDLFNICVTANPKPTKNRPVSIALS-DHQTDDNADPDICSDSDRNSMSTVALSEPT 436          
BLAST of SMED30020747 vs. Planmine SMEST
Match: SMESG000015266.1 (SMESG000015266.1)

HSP 1 Score: 238.424 bits (607), Expect = 4.309e-71
Identity = 151/436 (34.63%), Postives = 236/436 (54.13%), Query Frame = 1
Query:  784 HQILRNIKWFVKQLCSIFEETLQSKLYKSKLSPANLNIKIDVNCLPQNYKLSPAKQLTTIHKPNWCRSLTNSPIMRRFTPMRSSR---GSTPVKKFSIPPHHLKCEDVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKS-GSKVVKTLQLGPGTEF-SWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIA-IENSEYVCENSDETIKLYQLSKLDLDTLENPPDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGDGKPDELCISRNHSRPDNKGDDFTDVETKGLLTKVYDNPAFVC 2073
             ++L N+KWFVK LC +FEE LQ ++ K +L P ++    + N L  +          +I+K  W RSLTNSP+++R +  + S+   G TP +K +    +L   D +  RL+L+   T+ESER   ++QF + + V+YEYQIGML+S+S +  V  FV  L+IK I+   I  L+  +LN +I   +   P+S  +K VKT+ +G    + SW +  +F+  GLR+N VGG++CSNLTI T       +     RPDI+GYRN+I   +N  +  E SD      +LS  +  T +       L+ +   E  +DH HKCYKS+FF++ DR  IIDHL  C SF+ FC RE I P++  ++   + +      L   F++  +S  +  + +     L ++ +        +         +L+KVYDN AF+C
Sbjct:    9 QKVLLNLKWFVKHLCKVFEEKLQRRICKYRL-PDSIKTDSETNSLVGSN--------NSINKVKWNRSLTNSPLLKRLSLTKISKIQLGGTPNRKVA----NLNSADPRTARLILLSATTTESEREIYVKQFGESLCVVYEYQIGMLESLSSINLVASFVASLLIKVIKNGVIDSLSFEKLNLSILLNSELYPRSYVNKSVKTIAIGVANNYLSWNLRQLFTHPGLRYNHVGGENCSNLTIVTQLLCGKTTTGECRRPDIFGYRNLICHRKNDHFTIEESD------RLSIEEGHTTD-------LMIKSSTETLLDHLHKCYKSIFFVVLDRTVIIDHLLTCQSFKTFCLRELITPILFANVSDPDLSKNADKRLFPNFNLFHISVTSKPLENNVKSSLTVADDDDSSSFCSE-------CRILSKVYDNHAFMC 411          
The following BLAST results are available for this feature:
BLAST of SMED30020747 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020747 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020747 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020747 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020747 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020747 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020747 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020747 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5K3FC887.027e-4735.02Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A068WDA61.769e-4431.23Uncharacterized protein OS=Echinococcus granulosus... [more]
A0A068Y6K48.037e-4431.47Uncharacterized protein OS=Echinococcus multilocul... [more]
A0A4S2L5X14.483e-4226.90Uncharacterized protein OS=Opisthorchis felineus O... [more]
W6VD494.698e-4231.69Uncharacterized protein OS=Echinococcus granulosus... [more]
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BLAST of SMED30020747 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020747 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020747 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020747 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020747 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020747 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000037087.10.000e+099.77SMESG000037087.1[more]
SMESG000069112.13.468e-7738.02SMESG000069112.1[more]
SMESG000015266.14.309e-7134.63SMESG000015266.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30020747 ID=SMED30020747|Name=SMED30020747|organism=Schmidtea mediterranea sexual|type=transcript|length=2206bp
GCAGACTCAATCAATTTAATTTTAACAAAAAAGTTTACTATAAAGTTGCT
TTAGTCGATCTCCCTAAATAATAGATGGACTCGTTGCCGTACTCGTAGAA
AATAATAGAGCAGAATAAAGATGTGTTTGGCATACATTGCAATCACACGC
ACACAAGCAGGCTCGCACACTGACACGGAAACACACGAACGCGTTACTGT
ACATTTGGGAAATACACACAGTCACATATAGAGCATCAGAGTGATGGATC
AGCCAGTCACGGCAGGCGGCACTGTGTATCCATTTTCTATAAATCATTCA
TGGGGTTCCATTTATCCCGTTTATCCCATTTATGCCCTTTCTCTCGTGTG
CGTCACAGCAAAGGTAGAAGCTGCTCATTATTTGTTCAATTAAATAAAAA
GCAATTTCAGTTGGTTTGTTGTTTAACTATTTGATTAGAGATATTCAAGG
TGATATGGGAAATTTTATTTTCACAGATATATCAGCTCGATTTGATGGGA
ATTGGAAATTAAATGTTTCATTCCGAACTGATCCCAACAATATTGATAAA
ATCAAGACTTGATTGCGACCAACAATAATGAATTGATGAGCGCCGATTCA
TTTTATCATGTCCGAATTTCCTTTCCTCTATCTCCCTTGCACTTCACTAA
AATCAGTGGCACTTTCTCAAAAAGCCTGTGGCAACTGCGATATGCTATTT
GTGTCAGCAAATCCCTTGTAGAGATCGTTTGGAACCTTCAAATCATGTCT
TCGGATGTTACAAACATCAAATGTGCCAATCGGCATCAGATTCTCCGCAA
CATCAAATGGTTTGTGAAACAGTTGTGCTCAATATTTGAGGAAACTCTCC
AGTCAAAGTTGTATAAGAGCAAGTTATCCCCAGCCAATCTCAATATCAAG
ATTGATGTAAATTGTCTTCCACAAAACTACAAACTTTCTCCCGCCAAACA
ATTAACAACGATCCATAAGCCAAATTGGTGTCGATCATTGACTAATTCCC
CTATTATGCGCAGGTTCACGCCCATGAGGTCATCAAGAGGTTCGACTCCC
GTGAAAAAATTCAGCATTCCTCCTCATCACTTGAAATGTGAAGACGTACA
GTTGACTCGTCTCCTTCTCATCTACACCCAAACATCCGAGTCCGAGAGAA
TAGATCAAATTCAACAATTTGCCCAGCATGTCGGTGTGATTTATGAATAT
CAAATAGGCATGCTCAAGAGTGTCAGTCTGGTTATGGAGGTTGTGAGATT
TGTCGTAGACCTTATCATTAAAGCTATCCGTATGAATTTTATTACTGAAC
TTAACTCTCGTCAACTCAATCCAACAATTTTCTTTCTTAACATTCCTTTG
CCAAAGAGTGGATCAAAAGTTGTCAAGACTCTACAACTCGGGCCTGGTAC
AGAGTTTTCGTGGAGAATCAGCGACATGTTTTCTCGAAGTGGTTTAAGAC
ACAACAGAGTAGGCGGTCAAGACTGTAGCAATCTGACAATAAGTACGCAT
TTCTATGCCACTTCCGGTTCGGCATCTTATTCATATCGGCCAGACATCTA
CGGCTACAGAAACATCATTGCCATTGAGAACTCAGAATACGTCTGTGAAA
ATTCTGATGAAACGATTAAATTATATCAACTGTCCAAACTTGATTTAGAT
ACTCTCGAAAATCCTCCGGATAACGGAAGCCTTGTCGGCCGTGATCTGGA
GGAGCAATGCATGGATCACTGGCACAAGTGCTACAAATCCATGTTTTTCC
TTATTTGTGATCGCTGGGAAATCATTGATCACCTGGAAAACTGTGATTCA
TTCAGAGTATTCTGTGCAAGGGAAAAAATTTGTCCTGTCATGCAAATAAG
CCTGATTCCTGAGAATTTCACGTACCAACAAATCAGCGCGCTTCTCCAGA
TATTTGATGTCCTGTCTGTGTCCACCAACAATAATGTCATTGGCGATGGG
AAGCCTGATGAATTGTGTATATCACGCAATCACTCAAGGCCAGACAACAA
GGGCGATGATTTCACCGACGTTGAAACGAAAGGATTGCTGACGAAGGTCT
ACGATAATCCAGCATTTGTATGTTAAGGTGGCACTGACTGATGCGGCGGT
GAACAGATTGGGATTATACGTATCAATGTGCACCGAGAAATCCAATTATA
TTCTTCACTAGATCTTTTTCAGTTCAGTTTTTCAATAAAATTGTGATAAA
AATAAA
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protein sequence of SMED30020747-orf-1

>SMED30020747-orf-1 ID=SMED30020747-orf-1|Name=SMED30020747-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=497bp
MSADSFYHVRISFPLSPLHFTKISGTFSKSLWQLRYAICVSKSLVEIVWN
LQIMSSDVTNIKCANRHQILRNIKWFVKQLCSIFEETLQSKLYKSKLSPA
NLNIKIDVNCLPQNYKLSPAKQLTTIHKPNWCRSLTNSPIMRRFTPMRSS
RGSTPVKKFSIPPHHLKCEDVQLTRLLLIYTQTSESERIDQIQQFAQHVG
VIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFF
LNIPLPKSGSKVVKTLQLGPGTEFSWRISDMFSRSGLRHNRVGGQDCSNL
TISTHFYATSGSASYSYRPDIYGYRNIIAIENSEYVCENSDETIKLYQLS
KLDLDTLENPPDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHL
ENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNN
VIGDGKPDELCISRNHSRPDNKGDDFTDVETKGLLTKVYDNPAFVC*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR000095CRIB_dom