SMED30020747
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30020747 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Alignments
SMED30020747 aligns in the following genomic locations:
Homology
BLAST of SMED30020747 vs. TrEMBL
Match: A0A5K3FC88 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 7.027e-47 Identity = 111/317 (35.02%), Postives = 163/317 (51.42%), Query Frame = 1 Query: 1087 CEDVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQL-GPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSE---------YVCENSDETIKLYQ---------LSKLDLDTLENPPD------------NGSLVGRD--LEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNV 1938 C ++ R++L T+ESER + QFAQH+ V+YEYQIG L+ + V +V DL++K+I++ IT + +L + P S K VKT + G G + SWR+ D+++R GLRHN VGG++C NL I THF A + RPDIYGYRN+I + E S T+ +Y LS D+ PPD + S + R ++ H H+ Y+ +FF+I +R +IDHL C+SF FC R+ ICPVM ++ + F + L Q FD+ ++TN V Sbjct: 60 CSGIERNRVILFLKSTTESERKRCLIQFAQHMCVVYEYQIGFLQGLKAVHSAADYVADLLLKSIQIGRITSFSPSELTLQLLHDVRCKPSSQMKCVKTSPMTGTGEQLSWRLGDIWTRPGLRHNEVGGENCHNLNIVTHFLAPCLPDLETKRPDIYGYRNLIVLPTVESNILLSGESIYANASSNTVTVYTNCNSEAKECLSCFDI----FPPDEDLITLQHVGSVDSSPIRRTDVIKRHQRQHLHRAYRPVFFVIYERPSVIDHLTECESFAAFCKRQNICPVMFLNQETDLFEGRVCVNLFQHFDIFCLTTNGYV 372
BLAST of SMED30020747 vs. TrEMBL
Match: A0A068WDA6 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EgrG_000799200 PE=4 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.769e-44 Identity = 109/349 (31.23%), Postives = 175/349 (50.14%), Query Frame = 1 Query: 1093 DVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQL-GPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSEY------VCENS----------------------------DETIK-------------LYQLSKLDLDTLENPPDNGSLVGR-----------DLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGDGKPDE 1962 D++ +R+L I T+ES+R I +FAQH+ ++YEYQIG L+ + V +V +++I++I+ I+ + +L + + P S +K +KT + G G + SWR+ ++++R GLRHN VGG++C NL I THF A + RPDIYGYRN+I + N+E V EN+ +ETI L ++ K+D + +P G ++ R H H+ Y+ +FF+I +R +IDHL C+SF FC R+ ICPVM ++ + F + ++L Q FD+ ++T N + PDE Sbjct: 63 DIEQSRILSILRSTTESDRKISIHRFAQHLCIVYEYQIGFLQGLKAVHSAADYVAEVLIRSIQSGRISSFSPNELTLQLLHDSGCRPSSQTKCIKTSPMTGTGEQLSWRLGEIWTRPGLRHNEVGGENCHNLNIVTHFLAPCSTELEIKRPDIYGYRNLIVLPNTEPSTFFSDVYENANLNGATVFTNDSSIMGARSGYYDIFVPDEETIAVSNIRTGSRVRSPLSKVQKID-KSPSSPVRRGDVIKRQQGIKSKSPLLSTSVNLRQHLHRAYRPVFFVIYERPSVIDHLTECESFAAFCKRQNICPVMFLNQETDLFEGRVCTSLFQNFDIFCLTT-NGYMSKALPDE 409
BLAST of SMED30020747 vs. TrEMBL
Match: A0A068Y6K4 (Uncharacterized protein OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000799200 PE=4 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 8.037e-44 Identity = 107/340 (31.47%), Postives = 172/340 (50.59%), Query Frame = 1 Query: 1093 DVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQL-GPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSE-------YVCENS----------------------------DETIK-------------LYQLSKLDLDTLENPPDNGSLVGR-----------DLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNN 1932 D++ +R+L I T+ES+R I +FAQH+ ++YEYQIG L+ + V +V +++I++I+ I+ L+ +L + + P S +K +KT + G G + SWR+ ++++R GLRHN VGG++C NL I THF A + RPDIYGYRN+I + N+E V ENS +ETI L ++ K+D + +P G ++ R H H+ Y+ +FF+I +R +IDHL C+SF FC R+ +CPVM ++ + F + ++L Q FD+ ++TN Sbjct: 63 DIEQSRILSILRSTTESDRKISIYRFAQHLCIVYEYQIGFLQGLKAVHCAADYVAEVLIRSIQSGRISSLSPNELTLQLLHDSGCRPSSQTKCIKTSPMTGTGEQLSWRLGEIWTRPGLRHNEVGGENCHNLNIVTHFLAPCSTKLEIKRPDIYGYRNLIVLPNTEPSTFFSDNVYENSNLNGATVLTNDSSIMRARSGYYDIFVPDEETIAVSNIRTGSRVRSPLSKVQKID-KSPSSPVRRGDIIKRQQGLKSKSPLLSTSVNLRQHLHRAYRPVFFVIYERPSVIDHLTECESFAAFCKRQNVCPVMFLNQETDLFEGRVCTSLFQNFDIFCLTTNG 401
BLAST of SMED30020747 vs. TrEMBL
Match: A0A4S2L5X1 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009699 PE=4 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 4.483e-42 Identity = 145/539 (26.90%), Postives = 221/539 (41.00%), Query Frame = 1 Query: 778 NRHQILRNIKWFVKQLCSIFEETLQSKLYKSKLS-------------PANLNIKIDV-------NCLP-----------QNYKLSPA------------------KQLTTIHKPNWCRSLTNSPIMRRFT------------PMRSSRGSTPVKKFSIPPHHLKCEDVQLTRLLL------------------------------IYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQLGPGTE-FSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAI-------------ENSEYVCENSDETIKLYQLSKLDLDTL-----------ENPPDNGSLVGRDLEEQCM---------------------------------DHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGD 1947 NR +IL N+KWFV + FE L L + S P N ++++D N LP Q K+SPA KQ + + + RSLTNSP+ RR + P + GS+ V+ + HL T LL Y QT+ES+R I FAQ + +IYEYQ+ ML+ ++ + +VVD+++KAI++ I +L P + F P S K VKT+ L E +WR+ ++++ +GLRHN VGG++C NL+I THF + S +A R DIYGYRN+I +S+ + + + Y ++ D T+ E P NG D +E + H H+ Y+ +FF+I +R +I+HL CDSF FC R+ + PVM ++ F + + Q FD+ +V+ + V D Sbjct: 6 NREKILLNLKWFVHRTVKSFEGKLTHALSRQASSGNISSTRSSPVRAPVN-HLRVDAPPLLSENNELPLLRQLLEDQFHQQSKMSPAVESCHQSDLLTKKRNAASKQKSPLMR---IRSLTNSPLFRRLSFTSSSQSHDLVSPEKFQDGSSEVQDEA----HLDGYSNSTTEKLLQWPCSSNPQSPTDLAILRRFPIQASCQLYSFYEQTNESQRCKWISTFAQQLCIIYEYQLSMLRGLTAIHAAADYVVDVVLKAIKLGKIKATTGERLTPMLLFDEDCRPSSYCKCVKTIPLAITNEQLTWRLGEIWTLAGLRHNEVGGENCHNLSIVTHFLSASSAAEGYSRSDIYGYRNLILFFRGSQEIEDNMNGSDSKQKTSSHNSSQSYYDIASNDFLTISSSKVKTGIAGETPKKNGYSGISDSQESPIPSNVSNYPKASPELSSFQHGRKQTHMSGASTIRQHLHRAYRPVFFVIYNRPSVIEHLTECDSFAAFCKRQSLSPVMFLNQPTSIFDEKPYPCVYQYFDLFNVTVSGYVGAD 536
BLAST of SMED30020747 vs. TrEMBL
Match: W6VD49 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EGR_00143 PE=4 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 4.698e-42 Identity = 103/325 (31.69%), Postives = 168/325 (51.69%), Query Frame = 1 Query: 1093 DVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQL-GPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSEY------VCENS----------------------------DETIKLYQLSKLDLDTLENPPDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGDGKPDE 1962 D++ +R+L I T+ES+R I +FAQH+ ++YEYQIG L+ + V +V +++I++I+ I+ + +L + + P S +K +KT + G G + SWR+ ++++R GLRHN VGG++C NL I THF A + RPDIYGYRN+I + N+E V EN+ +ETI + ++ K + +P G ++ R ++ F+I +R +IDHL C+SF FC R+ ICPVM ++ + F + ++L Q FD+ ++T N + PDE Sbjct: 62 DIEQSRILSILRSTTESDRKISIHRFAQHLCIVYEYQIGFLQGLKAVHSAADYVAEVLIRSIQSGRISSFSPNELTLQLLHDSGCRPSSQTKCIKTSPMTGTGEQLSWRLGEIWTRPGLRHNEVGGENCHNLNIVTHFLAPCSTELEIKRPDIYGYRNLIVLPNTEPSTFFSDVYENANLNGATVFTNDSSIMGARSGYYDIFVPDEETIAVQKIDK----SPSSPVRRGDVIKRQQGSTSIEP----IDPFSFVIYERPSVIDHLTECESFAAFCKRQNICPVMFLNQETDLFEGRVCTSLFQNFDIFCLTT-NGYMSKALPDE 377
BLAST of SMED30020747 vs. Planmine SMEST
Match: SMESG000037087.1 (SMESG000037087.1) HSP 1 Score: 919.457 bits (2375), Expect = 0.000e+0 Identity = 442/443 (99.77%), Postives = 442/443 (99.77%), Query Frame = 1 Query: 745 MSSDVTNIKCANRHQILRNIKWFVKQLCSIFEETLQSKLYKSKLSPANLNIKIDVNCLPQNYKLSPAKQLTTIHKPNWCRSLTNSPIMRRFTPMRSSRGSTPVKKFSIPPHHLKCEDVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQLGPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSEYVCENSDETIKLYQLSKLDLDTLENPPDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGDGKPDELCISRNHSRPDNKGDDFTDVETKGLLTKVYDNPAFVC 2073 MSSDVTNIKCANRHQILRNIKWFVKQLCSIFEETLQSKLYKSKLSPANLNIKIDVNCLPQNYKLSPAKQLTTIHKPNWCRSLTNSPIMRRFTPMRSSRGSTPVKKFSIPPHHLKCEDVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQLGPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSEYVCENSDETIKLYQLSKLDLDTLENPPDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGDGKPDELCISRNHSRPDNKGDDFTD ETKGLLTKVYDNPAFVC Sbjct: 1 MSSDVTNIKCANRHQILRNIKWFVKQLCSIFEETLQSKLYKSKLSPANLNIKIDVNCLPQNYKLSPAKQLTTIHKPNWCRSLTNSPIMRRFTPMRSSRGSTPVKKFSIPPHHLKCEDVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQLGPGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIENSEYVCENSDETIKLYQLSKLDLDTLENPPDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGDGKPDELCISRNHSRPDNKGDDFTDDETKGLLTKVYDNPAFVC 443
BLAST of SMED30020747 vs. Planmine SMEST
Match: SMESG000069112.1 (SMESG000069112.1) HSP 1 Score: 256.144 bits (653), Expect = 3.468e-77 Identity = 165/434 (38.02%), Postives = 244/434 (56.22%), Query Frame = 1 Query: 787 QILRNIKWFVKQLCSIFEETLQSKLYKSKLS-PANLNIKIDVNCLPQNYKLSPAKQLTTIHKPNWCRSLTNSPIMRRFTPMRSSRGSTPVKKFSIPPHHLKCEDVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKSGSKVVKTLQLG-PGTEFSWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIAIEN---SEYVCENSDETIKLYQLSKLDLDTLENP-PDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVS-TNNNVIGDGKPDELCISRNHSRPDNKGDDF-TDVETKGLLTKVYDNPA 2064 +IL N+KWFVKQ C +FEE L+ K +L +L + N P LS + Q T H +W SLTNSP+++R + ++ GS PVKK + + + ++RL L+ TS+SER +++F +HV V+YEYQIGML S+ V VV +VVDL++KAI+ + L+S QLNPTI F + +PKSGSK+VKT+ + +WR+S++F+ GLRHN+VGG+DCSNL+I TH S RPDIYGYRN+I + S+ + ++ Y++S D T+ + ++ +DH HKCYKS+FF+I DR +I+HL C SFRVFC +E I P+M ++ E +L FD+ ++ T N +P + +S +H DN D +D + + T P Sbjct: 10 KILLNLKWFVKQFCRLFEEKLERHCTKHQLKMTQSLLVGEPANGEPCISPLSSSTQSTPKH-ASWTHSLTNSPLVKRLSALQRHSGS-PVKK----SNSFRSSAINISRLTLLKESTSQSEREKHLKRFGEHVSVVYEYQIGMLSSLQSVSVVVIYVVDLLLKAIKKGVLMGLDSAQLNPTILFDSTVMPKSGSKLVKTVGIRIHSNSLTWRVSNIFTHPGLRHNQVGGEDCSNLSIVTHLLTGFCPFGESRRPDIYGYRNLIVVPKRRISKKTEKGTNCNQTAYEISLYDSATISHARTNSTESTPTTSTNSLLDHIHKCYKSIFFVIFDRPTVIEHLMTCQSFRVFCTKELITPIMFLNAFNEITVKSCHKSLFHNFDLFNICVTANPKPTKNRPVSIALS-DHQTDDNADPDICSDSDRNSMSTVALSEPT 436
BLAST of SMED30020747 vs. Planmine SMEST
Match: SMESG000015266.1 (SMESG000015266.1) HSP 1 Score: 238.424 bits (607), Expect = 4.309e-71 Identity = 151/436 (34.63%), Postives = 236/436 (54.13%), Query Frame = 1 Query: 784 HQILRNIKWFVKQLCSIFEETLQSKLYKSKLSPANLNIKIDVNCLPQNYKLSPAKQLTTIHKPNWCRSLTNSPIMRRFTPMRSSR---GSTPVKKFSIPPHHLKCEDVQLTRLLLIYTQTSESERIDQIQQFAQHVGVIYEYQIGMLKSVSLVMEVVRFVVDLIIKAIRMNFITELNSRQLNPTIFFLNIPLPKS-GSKVVKTLQLGPGTEF-SWRISDMFSRSGLRHNRVGGQDCSNLTISTHFYATSGSASYSYRPDIYGYRNIIA-IENSEYVCENSDETIKLYQLSKLDLDTLENPPDNGSLVGRDLEEQCMDHWHKCYKSMFFLICDRWEIIDHLENCDSFRVFCAREKICPVMQISLIPENFTYQQISALLQIFDVLSVSTNNNVIGDGKPDELCISRNHSRPDNKGDDFTDVETKGLLTKVYDNPAFVC 2073 ++L N+KWFVK LC +FEE LQ ++ K +L P ++ + N L + +I+K W RSLTNSP+++R + + S+ G TP +K + +L D + RL+L+ T+ESER ++QF + + V+YEYQIGML+S+S + V FV L+IK I+ I L+ +LN +I + P+S +K VKT+ +G + SW + +F+ GLR+N VGG++CSNLTI T + RPDI+GYRN+I +N + E SD +LS + T + L+ + E +DH HKCYKS+FF++ DR IIDHL C SF+ FC RE I P++ ++ + + L F++ +S + + + L ++ + + +L+KVYDN AF+C Sbjct: 9 QKVLLNLKWFVKHLCKVFEEKLQRRICKYRL-PDSIKTDSETNSLVGSN--------NSINKVKWNRSLTNSPLLKRLSLTKISKIQLGGTPNRKVA----NLNSADPRTARLILLSATTTESEREIYVKQFGESLCVVYEYQIGMLESLSSINLVASFVASLLIKVIKNGVIDSLSFEKLNLSILLNSELYPRSYVNKSVKTIAIGVANNYLSWNLRQLFTHPGLRYNHVGGENCSNLTIVTQLLCGKTTTGECRRPDIFGYRNLICHRKNDHFTIEESD------RLSIEEGHTTD-------LMIKSSTETLLDHLHKCYKSIFFVVLDRTVIIDHLLTCQSFKTFCLRELITPILFANVSDPDLSKNADKRLFPNFNLFHISVTSKPLENNVKSSLTVADDDDSSSFCSE-------CRILSKVYDNHAFMC 411 The following BLAST results are available for this feature:
BLAST of SMED30020747 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30020747 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30020747 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30020747 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30020747 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30020747 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30020747 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30020747 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30020747 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30020747 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30020747 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30020747 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30020747 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30020747 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30020747 ID=SMED30020747|Name=SMED30020747|organism=Schmidtea mediterranea sexual|type=transcript|length=2206bpback to top protein sequence of SMED30020747-orf-1 >SMED30020747-orf-1 ID=SMED30020747-orf-1|Name=SMED30020747-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=497bp MSADSFYHVRISFPLSPLHFTKISGTFSKSLWQLRYAICVSKSLVEIVWNback to top Annotated Terms
The following terms have been associated with this transcript:
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