SMED30020723

Overview
NameSMED30020723
Smed IDSMED30020723
Length (bp)4162
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30020723 (SMED30020723) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30020723 (SMED30020723) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30020723 (SMED30020723) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30020723 (SMED30020723) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30020723

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X2 cellSMED30020723 SmedASXL_073510SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
cilated neuronSMED30020723SMESG000072318.1 dd_Smed_v4_31545_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30020723SMESG000072318.1 dd_Smed_v6_22505_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30020723 vs. Planmine SMEST
Match: SMESG000072318.1 (SMESG000072318.1)

HSP 1 Score: 532.332 bits (1370), Expect = 1.130e-168
Identity = 292/294 (99.32%), Postives = 294/294 (100.00%), Query Frame = 2 
Query: 2822 EKDISLFLNHKIFLRGYSISCMSNSIDGMYIFQWICQINNKNIELKQNLTEYDAKXXXXXXXXXXXXXXXDPQTIRFDYALEVLTYKCDCRISMISKXXXXXXXXXXAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKDKIYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTMIFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEINNILLRSKSLSEMFRTTRLNSKE 3703
            +KDISLFLNHKIFLRGYSISCMSNSIDGMYIFQWICQINNKNIELKQNLTEYDAKLYYENYNFLNNFLLEDPQTIRFDYALEVLTYKCDCRISMISKVVSFNFSNFFAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKD+IYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTMIFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEINNILLRSKSLSEMFRTTRLNSKE
Sbjct:  673 QKDISLFLNHKIFLRGYSISCMSNSIDGMYIFQWICQINNKNIELKQNLTEYDAKLYYENYNFLNNFLLEDPQTIRFDYALEVLTYKCDCRISMISKVVSFNFSNFFAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKDEIYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTMIFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEINNILLRSKSLSEMFRTTRLNSKE 966

HSP 2 Score: 90.8929 bits (224), Expect = 5.102e-18
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 3 
Query: 2055 KFFKYAVHKVISKIVIEIILGSTMVNAKFVFNQISDKKITISEFSENAXXXXXXXXXXXXXXXXNGDKYGFR 2270
            K   +  HKVISKIVIEIILGSTMVNAKFVFNQISDKKITISEFSENAEESLLKEEYFEET+NENGDKYGF+
Sbjct:  602 KILVFQFHKVISKIVIEIILGSTMVNAKFVFNQISDKKITISEFSENAEESLLKEEYFEETDNENGDKYGFQ 673
[Close]
BLAST of SMED30020723 vs. Planmine SMEST
Match: SMESG000072318.1 (SMESG000072318.1)

HSP 1 Score: 531.176 bits (1367), Expect = 1.234e-166
Identity = 292/294 (99.32%), Postives = 294/294 (100.00%), Query Frame = 2 
Query: 2822 EKDISLFLNHKIFLRGYSISCMSNSIDGMYIFQWICQINNKNIELKQNLTEYDAKXXXXXXXXXXXXXXXDPQTIRFDYALEVLTYKCDCRISMISKXXXXXXXXXXAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKDKIYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTMIFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEINNILLRSKSLSEMFRTTRLNSKE 3703
            +KDISLFLNHKIFLRGYSISCMSNSIDGMYIFQWICQINNKNIELKQNLTEYDAKLYYENYNFLNNFLLEDPQTIRFDYALEVLTYKCDCRISMISKVVSFNFSNFFAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKD+IYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTMIFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEINNILLRSKSLSEMFRTTRLNSKE
Sbjct:  825 QKDISLFLNHKIFLRGYSISCMSNSIDGMYIFQWICQINNKNIELKQNLTEYDAKLYYENYNFLNNFLLEDPQTIRFDYALEVLTYKCDCRISMISKVVSFNFSNFFAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKDEIYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTMIFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEINNILLRSKSLSEMFRTTRLNSKE 1118

HSP 2 Score: 92.4337 bits (228), Expect = 1.783e-18
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 3 
Query: 2073 VHKVISKIVIEIILGSTMVNAKFVFNQISDKKITISEFSENAXXXXXXXXXXXXXXXXNGDKYGFR 2270
            VHKVISKIVIEIILGSTMVNAKFVFNQISDKKITISEFSENAEESLLKEEYFEET+NENGDKYGF+
Sbjct:  760 VHKVISKIVIEIILGSTMVNAKFVFNQISDKKITISEFSENAEESLLKEEYFEETDNENGDKYGFQ 825
[Close]
BLAST of SMED30020723 vs. Planmine SMEST
Match: SMESG000072318.1 (SMESG000072318.1)

HSP 1 Score: 493.812 bits (1270), Expect = 1.645e-163
Identity = 272/273 (99.63%), Postives = 273/273 (100.00%), Query Frame = 2 
Query: 2885 MSNSIDGMYIFQWICQINNKNIELKQNLTEYDAKXXXXXXXXXXXXXXXDPQTIRFDYALEVLTYKCDCRISMISKXXXXXXXXXXAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKDKIYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTMIFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEINNILLRSKSLSEMFRTTRLNSKE 3703
            MSNSIDGMYIFQWICQINNKNIELKQNLTEYDAKLYYENYNFLNNFLLEDPQTIRFDYALEVLTYKCDCRISMISKVVSFNFSNFFAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKD+IYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTMIFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEINNILLRSKSLSEMFRTTRLNSKE
Sbjct:    1 MSNSIDGMYIFQWICQINNKNIELKQNLTEYDAKLYYENYNFLNNFLLEDPQTIRFDYALEVLTYKCDCRISMISKVVSFNFSNFFAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKDEIYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTMIFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEINNILLRSKSLSEMFRTTRLNSKE 273
[Close]
BLAST of SMED30020723 vs. Planmine SMEST
Match: SMESG000072318.1 (SMESG000072318.1)

HSP 1 Score: 478.789 bits (1231), Expect = 5.001e-158
Identity = 265/266 (99.62%), Postives = 266/266 (100.00%), Query Frame = 2 
Query: 2906 MYIFQWICQINNKNIELKQNLTEYDAKXXXXXXXXXXXXXXXDPQTIRFDYALEVLTYKCDCRISMISKXXXXXXXXXXAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKDKIYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTMIFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEINNILLRSKSLSEMFRTTRLNSKE 3703
            MYIFQWICQINNKNIELKQNLTEYDAKLYYENYNFLNNFLLEDPQTIRFDYALEVLTYKCDCRISMISKVVSFNFSNFFAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKD+IYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTMIFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEINNILLRSKSLSEMFRTTRLNSKE
Sbjct:    1 MYIFQWICQINNKNIELKQNLTEYDAKLYYENYNFLNNFLLEDPQTIRFDYALEVLTYKCDCRISMISKVVSFNFSNFFAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKDEIYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTMIFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEINNILLRSKSLSEMFRTTRLNSKE 266
[Close]
BLAST of SMED30020723 vs. Planmine SMEST
Match: SMESG000072295.1 (SMESG000072295.1)

HSP 1 Score: 111.309 bits (277), Expect = 2.135e-24
Identity = 74/218 (33.94%), Postives = 121/218 (55.50%), Query Frame = 2 
Query: 2825 KDISLFLNHKIFLRGYSISCMSNSIDGMYIFQWICQINNKNIELKQNLTEYDAKXXXXXXXXXXXXXXXDPQTIRFDYALEVLTYKCDCRISMISKXXXXXXXXXXAMPITRFDFNVNFKIFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKDKIYLMFGVYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRK 3478
            +DI L LN  I  +GYS+SC+SNSID ++I+ W+C ++N NI L  N++EY  K+  +  NF +NF LED QT+RF+Y LE   Y C C I+      SFN S  F   I R +F++  K FPG+   Y+ I+   W+ ++   F +++  Q YF  +  L+++I    G + +K +    IL  + +  + +   +++++   D      Q+   RK
Sbjct:  581 EDIFLILNPNIIKKGYSVSCVSNSIDTLFIYNWVCNVDNYNISLLSNVSEYGLKILKDYLNFADNFKLEDSQTVRFEYLLEAGFYHCRCLINSYGPEGSFNLSRMFTFKIERLEFSITGKNFPGVLRMYVFIIISLWVAVIMLTFSIMSITQTYFFSMAILENQIKFFIGKHRHKILNSKNILGDYYMIYDPNSMMQIIKSFSIDLRGIEMQKAAIRK 798
The following BLAST results are available for this feature:
BLAST of SMED30020723 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020723 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000072318.11.130e-16899.32SMESG000072318.1[more]
SMESG000072318.11.234e-16699.32SMESG000072318.1[more]
SMESG000072318.11.645e-16399.63SMESG000072318.1[more]
SMESG000072318.15.001e-15899.62SMESG000072318.1[more]
SMESG000072295.12.135e-2433.94SMESG000072295.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30020723 ID=SMED30020723|Name=SMED30020723|organism=Schmidtea mediterranea sexual|type=transcript|length=4162bp
ATTCACTGACATTAATCAATTCTTTCAGTCGACAGTTATCAAGAACTTGA
GAACAGATCTTGATTAAACGGTTAAAACATGAGTGTCCAACCCAAATAAT
GATCTTGTGGGCCACTTTGGAAATCCTCATATTAGATTTAGATACACTAT
TTACATTTTTAGGAACTAAAAATTGAAACATAAATGGTCAAGATAGACGA
CTGCATGCGTCCCGCGGGCCGCAGGTTGGACATTCCTGGGTTTTAGATAT
GTACATTAATTAAAAATCATAAAAATATTTTCAACTAATGGGAAACTTAC
ATAAATCATTGATAACAAAAATATTAAAACTTATCTACATTTAATTTGAG
CTTGCGGCACCTTGGTTGAGAATCACTGTTCTAGAGATTCGTATTCTTGC
ACCACAATGCTCCAAAATAAGCGTTTTACTTTTTTTTACGTGCAAATGAT
GTCATTGTCCAATAAAGTAGCAAGTAACGGTTTGATATAGGGCTATAATT
TTATTCTGTTTTTATTTAATACTAAATATTCAACTGAAATACCAAAAATG
ATGCCAATTTATGGATGGCAAATGAAATTAAGCATTGCCAAATTTCAGTA
CTAACCCTTTTAACCAGTGCTTCTCAATTATTTTCAGCCCATGTTTTACG
TCCAAACGTTTTCTGTCCATGACGCCGGGTCACTTAAGTGACAGGCAAAA
GGAAATAAGTGCCGCCTTATTGGATATTAATGTAAGTGGTATCATATTCC
TGAGAAAGTGTAACTGAATTCATATATAAGTAGTATTTACATGTTATTAA
ACCAATTTTTTCCTCATTTGTATAAAATAGTTATATTATTCAAATATTAT
TTATTTTATATTAATATTGATTTAATTTATTATATATTGATGTTGTTTAA
AAGTAATATATTTATGAATTTATATTTTTGTTATTGTTTATATATTTTTT
AATGACTACTCAACATTGCTGAATTCAAAGATTGAAAGATAAATTTATCA
GTTAAAATCGTTTACAAAGCACTGATTTAGAATACGCAGTTTCCGAGTCA
TAAGCCACTGGCTTAAAAGATTTTTAAAATATTTTAGGAGGAAAGAGAAA
GGAAGATGATTTTGATGAATTAATTTTATTTGAGCATTCGCTAAGTCACT
CTTTACCAAGCCTTTTCCGATTAAAAAAAATATATAAAATTGTTTTAAAT
CAAAGGATCATAACACGAAAACATTTCGTATGTGTGTAGTTATTACATCT
GTGAACCTTGTGTAAGTCATATTTTATTTAACATAATAATTGTTAGATAT
TTTATTAATTATTAATATTTCGTAATTATTATAAATCATCCAATAGAACT
TTATGTATAAGCAATATAGAAATTAATAATAGTGATGATAGTGACAATTT
ATAAACTTTCTAAAAGATTCAAAATTTCATTCGGCACTACATTTTCGTAA
ATTAGGTGGCTAATAATGATATAATTTCAATGTATAGTGGTAGTCAAAAT
AGTAGTGAATTACCATATTCTATTGATAAACAGTATGGATCAGGATAGTT
ACGAACAATTAGAAAATTCAGTATTCTTATTCTTAAACGTATCGAAAGTT
TGGTATGACAACTGTAAAAGATGTGATTATGAACTATCAGATAATATTAA
CATATCTAAAAACATGCTTTGACAAAAATAGGAAGTTTTACCAAGTGTTG
CGGGTTTGTTTCAACAGGATAAACTTCATTTCTTTGTTCTACTCCTACAA
AATCGCAAAAACATCGGTTATCTTATAAAAAAAAACAAAAAGGACATGAA
ACTTTATTTTCAAAATGACTCGTATTGTATATTTAACTGACAATCACCTC
AAGCAGTTATTGAATATGGAACATTTCAAGAAGTTTTTCCAGTTAATTCT
ATTATAAATAGTATAAATAAGATGAGATTTTATATTAATGGTTTTCATCG
CTGATGATTTTGCATTTACACGTTCAAATCAAAGTTGTTTATTAAAATAA
AAAAAGTGTTTGGCTGTAATAGATGCTATGAAACTGAACCATTTCATGTT
TTATAAGTTTTTTAAATATGCAGTTCATAAAGTGATATCAAAAATAGTCA
TTGAGATTATTTTGGGATCTACGATGGTAAATGCGAAATTTGTATTTAAT
CAAATTTCAGACAAAAAAATCACGATTTCTGAGTTCAGTGAGAATGCTGA
GGAAAGTTTATTGAAGGAAGAATATTTTGAAGAAACTGAAAATGAAAATG
GAGATAAATATGGATTCCGTATGAAAGCCTTTATAATCGATTGACGGGAG
AAATATGGAAAAGCTAAAGACACACGCCATCACTAATAAGACAACTATAA
AAGAAAACGGAGAAAAAAAGTAAACCGAAACATGGTAAAGAAGGTATCAA
CATTCTGCATCGACTGCGTTGGTTGTCCTCGTGTGTTTGGATTGTTTTAA
AAGGAGAATCATAAATAAATTGTATTTTCAGACTTTGTTTATATTATTGC
AAGAATGATAAAGTGGAATATGTTGAGTACCATATTCAGCACTGTAACCC
CAATTTACGGGATCAGAGAGGGTATCCTACAACGGAAAATATATTGAAAC
AGCGACCCCAACAAAGCAAACAGTACACCAAATCATGAATACACGGACGG
TCATAATGAATTGGATACAATGTTCCTGGTGTTCATTATGACTGCCATTG
CGCTTAACCTGTTAAATCAAAATTAATAATATTTCTGTTTTTACAAAGAA
AAATTTTGAATCAAATAGTGAAATCTTTGGCATTAATAATTTTTTATTCA
ATTTTATCTTGTTCAAATATAGAAAAAGACATATCATTATTTTTAAATCA
TAAAATATTTCTAAGAGGTTATTCTATCAGCTGTATGTCTAATTCCATAG
ACGGTATGTATATTTTTCAATGGATTTGCCAGATAAATAATAAAAACATT
GAGTTAAAACAAAACTTGACGGAATATGATGCAAAATTATATTATGAAAA
TTACAATTTTCTGAATAATTTCTTACTCGAAGACCCTCAAACTATACGAT
TCGACTACGCATTGGAAGTTTTAACGTATAAATGTGATTGTAGAATTAGC
ATGATATCAAAAGTTGTATCGTTCAATTTCTCAAATTTTTTTGCCATGCC
AATTACAAGATTCGATTTTAACGTCAATTTCAAAATATTTCCCGGAATAA
CTTATACTTACCTGTCGATAGTTTGTTTAACCTGGCTATTTATTCTAAAT
GCTGCATTTTTCGTCTTGGCATTTATTCAAAATTATTTTATGATGATTGA
TAAGTTAAAAGATAAAATTTATCTCATGTTTGGCGTTTACGCTTATAAAT
ATATTCCAATTGACAAAATTCTTCGAAAATTTGTTATTAAGGGAAATAAT
GATTTCTTCAACGAATTGGTTCAAAATCTGAAAAAGGATTCCGAGGAATA
TAGAGACCAACAAAGAGAAAAAAGAAAAACTATGATATTCTCGGATTTTC
TGAATTTTCGTTTGCAAAGACGCAAAATTTCCAGTGAAAAAATGTTTTTT
GTTCCCTTTATCGATTACGTTGAAGCCGCTTCAGTCCTGGTTGAAAGCAA
AGAAAGTGAAAAAATCGATTCAATGGAAGAAATTAATAATATACTTCTTA
GAAGTAAAAGCCTTTCCGAAATGTTTAGAACCACCAGATTGAACTCCAAA
GAGGTATCGAAATTATTGTTTATATTTATTCTTAGTTATGTTAGACTTAG
TTTATTATTACAGCAGTTTGCAAATATATGACAGTAGAGACAACTATTGA
TATTATTAAACACTTATTTTTACCACTTGCATTGGTTGCAAATTGCGATT
TTTGATTGGTTCGACATAATTACGTTGAAAAGGCAGTGCCGAAGATTCGT
GTTAAATAGAAAACAACACACTGATAGTTTCTTCAAGACAAGAATTTACT
GAATAATTTTAATTATTGTTGGAATTGAAAAACAGTAAACACAAAAAGAA
GTTCAAAGATAAATTTCAGAGATACTATTTATTTTCTTGTTCAACAGATT
CTGTCCGAAACTGATAATATTCTGGAATATTTTTGAGATCAATTTTTCGA
AATGCATATTTGAGGGTCTGAATATGTAATTATTGAAATACCTGTAGTTT
TTAACAATGGAC
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protein sequence of SMED30020723-orf-1

>SMED30020723-orf-1 ID=SMED30020723-orf-1|Name=SMED30020723-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=299bp
MSNSIDGMYIFQWICQINNKNIELKQNLTEYDAKLYYENYNFLNNFLLED
PQTIRFDYALEVLTYKCDCRISMISKVVSFNFSNFFAMPITRFDFNVNFK
IFPGITYTYLSIVCLTWLFILNAAFFVLAFIQNYFMMIDKLKDKIYLMFG
VYAYKYIPIDKILRKFVIKGNNDFFNELVQNLKKDSEEYRDQQREKRKTM
IFSDFLNFRLQRRKISSEKMFFVPFIDYVEAASVLVESKESEKIDSMEEI
NNILLRSKSLSEMFRTTRLNSKEVSKLLFIFILSYVRLSLLLQQFANI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
PLANA:0002111X2 cell