Protein LKAAEAR1

Overview
NameProtein LKAAEAR1
Smed IDSMED30020711
Length (bp)513
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Protein LKAAEAR1 (SMED30020711) t-SNE clustered cells

Violin plots show distribution of expression levels for Protein LKAAEAR1 (SMED30020711) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Protein LKAAEAR1 (SMED30020711) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Protein LKAAEAR1 (SMED30020711) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30020711

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30020711h1SMcG0020496 SmedASXL_011591SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
pharynxSMED30020711h1SMcG0020496 dd_Smed_v4_8554_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30020711h1SMcG0020496 dd_Smed_v4_8554_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30020711h1SMcG0020496 dd_Smed_v4_8554_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30020711h1SMcG0020496 dd_Smed_v4_8554_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30020711h1SMcG0020496 dd_Smed_v6_8554_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
epidermisSMED30020711h1SMcG0020496 dd_Smed_v4_8554_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Protein LKAAEAR1 vs. Ensembl Human
Match: LKAAEAR1 (LKAAEAR motif containing 1 [Source:HGNC Symbol;Acc:HGNC:33718])

HSP 1 Score: 55.4546 bits (132), Expect = 2.752e-9
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  208 LFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPT--KPQRETHKDALTKSQRERVEMILE---NDSILKR 453
            L G LKAAE+R R+R +RL+Y +    EI  L+  Q SA  A+RL+  LP   KP R    D L + +R RVE ILE   + +I  R
Sbjct:  110 LLGVLKAAEARGRVRALRLRYTRMRAEEIALLIQRQKSARAAIRLELFLPPQLKPAR--IPDPLDRQERRRVETILEENVDGTIFPR 194          
BLAST of Protein LKAAEAR1 vs. Ensembl Mouse
Match: Lkaaear1 (LKAAEAR motif containing 1 (IKAAEAR murine motif) [Source:MGI Symbol;Acc:MGI:2685538])

HSP 1 Score: 53.1434 bits (126), Expect = 1.372e-8
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 1
Query:  208 LFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPTKPQRETHKDALTKSQRERVEMILEND 438
              G +KAAE+R R+  +RL+Y +    EI  L+  Q SA  A+RL+  LP + +     D L + +R RVE ILE +
Sbjct:  114 FLGLIKAAEARGRVHTLRLRYTRMRAEEISLLIQKQSSARAAIRLELFLPPQLKPTKIPDPLDRHERRRVETILEEE 190          
BLAST of Protein LKAAEAR1 vs. UniProt/SwissProt
Match: sp|Q8TD35|LKAM1_HUMAN (Protein LKAAEAR1 OS=Homo sapiens OX=9606 GN=LKAAEAR1 PE=1 SV=3)

HSP 1 Score: 55.4546 bits (132), Expect = 1.322e-8
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  208 LFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPT--KPQRETHKDALTKSQRERVEMILE---NDSILKR 453
            L G LKAAE+R R+R +RL+Y +    EI  L+  Q SA  A+RL+  LP   KP R    D L + +R RVE ILE   + +I  R
Sbjct:  110 LLGVLKAAEARGRVRALRLRYTRMRAEEIALLIQRQKSARAAIRLELFLPPQLKPAR--IPDPLDRQERRRVETILEENVDGTIFPR 194          
BLAST of Protein LKAAEAR1 vs. UniProt/SwissProt
Match: sp|Q8BIG2|LKAM1_MOUSE (Protein LKAAEAR1 OS=Mus musculus OX=10090 GN=Lkaaear1 PE=2 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 9.598e-8
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 1
Query:  208 LFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPTKPQRETHKDALTKSQRERVEMILEND 438
              G +KAAE+R R+  +RL+Y +    EI  L+  Q SA  A+RL+  LP + +     D L + +R RVE ILE +
Sbjct:  114 FLGLIKAAEARGRVHTLRLRYTRMRAEEISLLIQKQSSARAAIRLELFLPPQLKPTKIPDPLDRHERRRVETILEEE 190          
BLAST of Protein LKAAEAR1 vs. TrEMBL
Match: K1S606 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10010069 PE=4 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.194e-31
Identity = 61/122 (50.00%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   70 YTNPSKEVLEAQQNSKKRILDQIKAQKKFRIVEDENSRNEKLKHDVLFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPTKPQRETHKDALTKSQRERVEMILEN 435
            Y +P KE+ +A   +KKR+L++ +   +      E   +E+ KH  L GQLKAAE+RNR+RIMRL+YQ N   EI HL++CQP+AL+AVRLQAL+P+ P+RE  +D L K +R RVE +LE+
Sbjct:   12 YEDPPKEISDAMGATKKRLLEKRRVMTRINQDLPEEEIDERDKHAKLIGQLKAAEARNRLRIMRLRYQANRAQEISHLIACQPTALKAVRLQALVPSYPEREDRRDKLDKLERVRVERLLED 133          
BLAST of Protein LKAAEAR1 vs. TrEMBL
Match: A0A210PR04 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT23666 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.153e-30
Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 1
Query:   70 YTNPSKEVLEAQQNSKKRILDQIKAQKKFRIVEDENSRNEKLKHDVLFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPTKPQRETHKDALTKSQRERVEMILENDSIL 447
            Y +P+KE+ EAQ  + KR+LD+ + + +      +    E+ KH  L GQLKAAESRNR+RIMRL+YQ N   EI HL++CQP+A  AVRLQAL+P+  +R   KD L K  RER E +LE+   L
Sbjct:   43 YEDPAKEITEAQSVTNKRLLDRKRNEIRLNAPLPDEEYEEREKHAKLIGQLKAAESRNRLRIMRLRYQSNRSQEISHLIACQPTAARAVRLQALVPSYAERRQRKDTLDKLSRERCERLLEDSQGL 168          
BLAST of Protein LKAAEAR1 vs. TrEMBL
Match: A0A2G8K9T4 (Uncharacterized protein OS=Stichopus japonicus OX=307972 GN=BSL78_18397 PE=4 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.497e-29
Identity = 65/132 (49.24%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   70 YTNPSKEVLEAQQNSKKRILDQIKA---QKKFRIVEDENSRNEKLKHDVLFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPTKPQRETHKDALTKSQRERVEMILENDSILKRN 456
            Y  P K    A  NSKKR+ +++KA   +KK     DE    EK K+  L GQLKAAE+RNR+RIMRL YQ N   EI HL+SCQP+A++AVRLQA++P  P++ +  D+L K +R R+E ILE+++ L  N
Sbjct:   42 YEEPPKSAALAMANSKKRVQEKMKADQERKKKETSVDE----EKEKYSQLIGQLKAAEARNRLRIMRLHYQNNRAEEIRHLISCQPTAIKAVRLQAMVPPVPEKGSPADSLDKLERSRIESILEDENGLTIN 169          
BLAST of Protein LKAAEAR1 vs. TrEMBL
Match: V3YYI6 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_236793 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.030e-28
Identity = 63/129 (48.84%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   70 YTNPSKEVLEAQQNSKKRILDQIKAQKKFRIVEDENSRNEKLKHDVLFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPTKPQRETHKDALTKSQRERVEMILENDSILKRN 456
            Y  PSK + E Q   KKR+++  K Q+       E+   EK KH  L GQLKAAE+RNR+RIMRL+YQ N   E+ HL++CQPSAL+AVRLQAL+P  P  ++ K+ + K   ERVE++LE+   L  N
Sbjct:   31 YEEPSKTIQETQLQCKKRLIELRKEQELKNAPPKEDELMEKEKHAKLIGQLKAAEARNRLRIMRLRYQANRAQEVSHLIACQPSALKAVRLQALVPPYPDTKSRKNKMDKLDMERVEILLEDTKGLITN 159          
BLAST of Protein LKAAEAR1 vs. TrEMBL
Match: R7T5S6 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_220213 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.059e-28
Identity = 63/127 (49.61%), Postives = 85/127 (66.93%), Query Frame = 1
Query:   70 YTNPSKEVLEAQQNSKKRILDQIKAQKKFRIVEDENSRNE-----KLKHDVLFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPTKPQRETHKDALTKSQRERVEMILEN 435
            Y  P K + EAQ +S+KR++D      K R V +    +E     + KH+ L GQLKAAE+RNRIRIMRL+Y+ N+  EI+HL +CQP+A +AVR+QALLPT+P R    D+L K  R RVE +LE+
Sbjct:   78 YEEPPKAIAEAQLSSRKRLVDL-----KNRYVRENKPPSELEIDDRDKHEKLIGQLKAAEARNRIRIMRLRYETNMGQEINHLTACQPTAGKAVRMQALLPTRPDRRPQGDSLDKISRGRVECLLED 199          
BLAST of Protein LKAAEAR1 vs. Ensembl Cavefish
Match: ENSAMXT00000043437.1 (LKAAEAR motif containing 1 [Source:NCBI gene;Acc:103031616])

HSP 1 Score: 80.8777 bits (198), Expect = 1.841e-19
Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   70 YTNPSKEVLEAQQNSKKRI---LDQIKAQKKFRIVEDENSRNEKLKHDVLFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPT---KPQRETHKDALTKSQRERVEMILENDSIL 447
            Y  PSKE       S++R+   L Q KA++  + V D      KL  D L GQLKA E+RNRIR MR QY      EI+ ++SCQPSA  AVRL+ LL     K ++    D L + QR+RVE ILE++  L
Sbjct:   34 YAEPSKEAKGWMAASRQRVHARLAQQKAERNPQRVLDS-----KLHQDELIGQLKATEARNRIRQMRQQYHNLKAQEINLMISCQPSAQSAVRLELLLQAQEKKNKKTNISDGLDQLQRQRVEEILEDEKGL 160          
BLAST of Protein LKAAEAR1 vs. Ensembl Nematostella
Match: EDO42816 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S0D6])

HSP 1 Score: 103.219 bits (256), Expect = 2.754e-28
Identity = 58/126 (46.03%), Postives = 86/126 (68.25%), Query Frame = 1
Query:   70 YTNPSKEVLEAQQNSKKRIL---DQIKAQKKFRIVEDENSRNEKLKHDVLFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPTKPQRETHKDALTKSQRERVEMILEND 438
            Y +P+KEV E+   ++KR+    +QIK + K   +E   +  E+ KH  L GQLKAAE+RNRIR+MRL+Y+ N   E++HL+SCQP+AL+AVRLQ+L+P +      +D L K +R RV  +LE++
Sbjct:   52 YESPAKEVAESMAAARKRLKELKNQIKKETKPPALE---TVTEQDKHVKLIGQLKAAEARNRIRLMRLRYEHNRASEVNHLISCQPTALKAVRLQSLVPPETDPIKIRDLLGKGERYRVNALLEDE 174          
BLAST of Protein LKAAEAR1 vs. Planmine SMEST
Match: SMESG000010224.1 (SMESG000010224.1)

HSP 1 Score: 261.151 bits (666), Expect = 9.259e-91
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 1
Query:   67 IYTNPSKEVLEAQQNSKKRILDQIKAQKKFRIVEDENSRNEKLKHDVLFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPTKPQRETHKDALTKSQRERVEMILENDSILKRNF 459
            IYTNPSKEVLEAQQNSKKRILDQIKAQKKF+IVEDE SRNEKLKHDVLFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPTKPQRETHKDALTKSQRERVEMILENDSILKRNF
Sbjct:   13 IYTNPSKEVLEAQQNSKKRILDQIKAQKKFQIVEDEKSRNEKLKHDVLFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALEAVRLQALLPTKPQRETHKDALTKSQRERVEMILENDSILKRNF 143          
The following BLAST results are available for this feature:
BLAST of Protein LKAAEAR1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
LKAAEAR12.752e-943.68LKAAEAR motif containing 1 [Source:HGNC Symbol;Acc... [more]
back to top
BLAST of Protein LKAAEAR1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Protein LKAAEAR1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Protein LKAAEAR1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Protein LKAAEAR1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Protein LKAAEAR1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Lkaaear11.372e-838.96LKAAEAR motif containing 1 (IKAAEAR murine motif) ... [more]
back to top
BLAST of Protein LKAAEAR1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 2
Match NameE-valueIdentityDescription
sp|Q8TD35|LKAM1_HUMAN1.322e-843.68Protein LKAAEAR1 OS=Homo sapiens OX=9606 GN=LKAAEA... [more]
sp|Q8BIG2|LKAM1_MOUSE9.598e-838.96Protein LKAAEAR1 OS=Mus musculus OX=10090 GN=Lkaae... [more]
back to top
BLAST of Protein LKAAEAR1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
K1S6067.194e-3150.00Uncharacterized protein OS=Crassostrea gigas OX=29... [more]
A0A210PR047.153e-3049.21Uncharacterized protein OS=Mizuhopecten yessoensis... [more]
A0A2G8K9T45.497e-2949.24Uncharacterized protein OS=Stichopus japonicus OX=... [more]
V3YYI61.030e-2848.84Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
R7T5S61.059e-2849.61Uncharacterized protein OS=Capitella teleta OX=283... [more]
back to top
BLAST of Protein LKAAEAR1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSAMXT00000043437.11.841e-1943.94LKAAEAR motif containing 1 [Source:NCBI gene;Acc:1... [more]
back to top
BLAST of Protein LKAAEAR1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Protein LKAAEAR1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Protein LKAAEAR1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO428162.754e-2846.03Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Protein LKAAEAR1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Protein LKAAEAR1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000010224.19.259e-9198.47SMESG000010224.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30020711 ID=SMED30020711|Name=Protein LKAAEAR1|organism=Schmidtea mediterranea sexual|type=transcript|length=513bp
TCTATATAAATCTTATATGAATCGATTTCAATGAAAGAAGAAAAACCTAA
GAAGAATCCAAATAAAATTTATACAAATCCTTCTAAAGAGGTTCTTGAAG
CTCAACAAAATTCGAAAAAACGAATTTTGGATCAAATAAAAGCACAAAAA
AAATTTCGAATTGTGGAAGATGAAAATTCTCGAAACGAAAAGCTTAAACA
TGATGTTCTTTTCGGCCAGTTGAAAGCAGCCGAATCGAGAAATCGGATCA
GAATAATGCGGCTGCAATATCAAAAAAATATTATCGGTGAAATCGATCAT
CTCGTGTCATGCCAGCCGTCAGCACTCGAAGCGGTCCGTTTGCAAGCATT
GTTGCCCACAAAACCCCAAAGGGAAACCCATAAAGACGCACTGACAAAAT
CTCAACGTGAAAGAGTTGAAATGATTCTTGAAAATGATTCGATTTTGAAA
AGAAATTTCTAATAAAAGCTTTTGTTAAAATAAAATGTCATTGATTTTTG
TTAAATAAAAATT
back to top

protein sequence of SMED30020711-orf-1

>SMED30020711-orf-1 ID=SMED30020711-orf-1|Name=SMED30020711-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=144bp
MKEEKPKKNPNKIYTNPSKEVLEAQQNSKKRILDQIKAQKKFRIVEDENS
RNEKLKHDVLFGQLKAAESRNRIRIMRLQYQKNIIGEIDHLVSCQPSALE
AVRLQALLPTKPQRETHKDALTKSQRERVEMILENDSILKRNF*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR029152LKAAEAR1
Vocabulary: molecular function
TermDefinition
GO:0003674molecular_function
Vocabulary: cellular component
TermDefinition
GO:0005575cellular_component
Vocabulary: biological process
TermDefinition
GO:0008150biological_process
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 23..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
IPR029152Protein LKAAEAR1PFAMPF15478LKAAEARcoord: 12..129
e-value: 3.3E-31
score: 108.4
IPR029152Protein LKAAEAR1PANTHERPTHR35665FAMILY NOT NAMEDcoord: 15..141