SMED30020656

Overview
NameSMED30020656
Smed IDSMED30020656
Length (bp)9812
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30020656 (SMED30020656) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30020656 (SMED30020656) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30020656 (SMED30020656) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30020656 (SMED30020656) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30020656

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30020656 SmedASXL_016522SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30020656 SmedASXL_016522SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
epidermisSMED30020656h1SMcG0017306 dd_Smed_v4_3935_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30020656h1SMcG0017306 dd_Smed_v4_3935_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30020656h1SMcG0017306 dd_Smed_v4_3935_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30020656 dd_Smed_v4_13429_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30020656 dd_Smed_v4_13429_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30020656 dd_Smed_v4_13429_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30020656 dd_Smed_v4_13429_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30020656 dd_Smed_v4_13429_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
anterior sideSMED30020656 dd_Smed_v4_17155_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Category 2 cellSMED30020656h1SMcG0017306 dd_Smed_v6_3935_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30020656 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.010142:6534..16554 -47452
Homology
[Close]
BLAST of SMED30020656 vs. Ensembl Xenopus
Match: npffr2 (neuropeptide FF receptor 2 [Source:Xenbase;Acc:XB-GENE-994428])

HSP 1 Score: 75.8702 bits (185), Expect = 2.154e-15
Identity = 80/238 (33.61%), Postives = 115/238 (48.32%), Query Frame = -1 
Query: 2292 KFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYM---PKNLE*SFCWYRTL*ANI**VA*RI*GKTKNDHKI-YMGEFVVLKLAEPYSCRGRNTTTDNLFTSISLAKKLLEIKTTXXXXXXXXXXXLPKLQRDNMIQ--YSTKLYK*DEYVLTIYX----XXXXXXXXXXXXXXKYENKKTQT*P*HSCNLQQNKV*G*YYLPHG*KIYRERGF-RR*PLHMFYNILHLEAINS*IL 2972
            +F +N    + PG ++TIDEQLFP+K R  FTQY+   P      F   R L       A    GK  +  K   + E VV+ L EP+   GRN TTDN FTS+S   +LL+ KTTL+  +   RR LP+L +D   +  +ST + +     LTIY             +       +N+K +  P    +    K  G   L    ++Y  R   RR P+ ++YN+L L A+N+ IL
Sbjct:   74 RFNKNCAESFTPGEHMTIDEQLFPTKVRCPFTQYVATKPDKFGIKFWMARDLETKYVCNASPYLGKDPSRQKGERLAENVVMNLMEPFLDEGRNVTTDNFFTSLS--HRLLQHKTTLLGTVNKVRRELPQLAKDTAQREVFSTSVLRSGSVSLTIYAPKKNLTVCVLNSMHQDVTIGDNRKRK--PNTITDYNHMKC-GVDVLDQMARMYSVRAATRRWPVAVYYNMLDLAAVNAYIL 306

HSP 2 Score: 29.6462 bits (65), Expect = 2.154e-15
Identity = 13/43 (30.23%), Postives = 26/43 (60.47%), Query Frame = -2 
Query: 2987 WRSSFF----SKTITVDKFMEMFRFIRIGNKEERSQRLKTD*F 3103
            W  +F      +T+  D+F+ + + +R  +K+ R++R+KTD F
Sbjct:   23 WSENFLVPVIKETMPRDRFISIMQHLRFDDKDTRAERVKTDKF 65
[Close]
BLAST of SMED30020656 vs. TrEMBL
Match: H9IWL2 (HTH La-type RNA-binding domain-containing protein OS=Bombyx mori OX=7091 PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.085e-52
Identity = 108/269 (40.15%), Postives = 153/269 (56.88%), Query Frame = -1 
Query: 2226 LISAKWGKFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYMPKNLE*SFCWYRTL*ANI**VA*RI*G-------KTKNDHKIYMGEFVVLKLAEPYSCRGRNTTTDNLFTSISLAKKLLEIKTTXXXXXXXXXXXLP---KLQRDNMIQYSTKLYK*DEYVLTIYXXX--XXXXXXXXXXXXKYENKKTQT*P*HSCNLQQNKV*G*YYLPHG*KIYRERGFRR*PLHMFYNILHLEAINS*ILDRDYWTKYIS-EEFSF*IS*RIA 2993
            L+S  W KFIEN++ C+KPGA +T+DEQLFP+KAR RFTQYMP N    F     L +++      + G       +T+N     + EFVV+KL EPY+ +GR  TTDN FTSI LA KL    T+L+  +RAN+R LP   KL++D+M ++ST LY+ +   LT+YKSK   K  +L    K+   +K  +  P       + K           K   + G RR PL +F+NIL L  INS IL ++   + IS ++F F ++  +A
Sbjct:  585 LVSPVWDKFIENSQNCFKPGAYITVDEQLFPTKARCRFTQYMP-NKPHKFGIKFWLASDV-ETKYVVNGFPYLGKDETRN-ASTPLSEFVVMKLLEPYTMKGRTVTTDNFFTSIPLALKLRSKSTSLLGTIRANKRELPKICKLKKDSMARFSTLLYQSNGCTLTVYKSKPNKKVLLLSTKHKNIKIDKAAKKIPETVLFYNKTKFGVDVTDQMARKYTVKSGCRRWPLQVFFNILDLAGINSWILYKNTTGENISRKDFLFRLAEELA 850

HSP 2 Score: 98.2117 bits (243), Expect = 3.085e-52
Identity = 63/138 (45.65%), Postives = 81/138 (58.70%), Query Frame = -3 
Query: 3163 DNINEIEDSNDSGNENYHKRKRTRXXXXXXXXXXXXXXENKENS-IEHCVDGTVWKPLKEGKGCHRMPAYSVFKDVSGLTAYVKRNIMLENVRSAFDLIIDNHKIAHIKICTEIEARK---DN*SITKAQLRVFLAIF 3564
            DNIN+   S+DS  EN    KRTR         E  D  N  N   E   DGT+W  ++EG    R+P +S FKDV G TA+ KRNIM  N+ SAF L+IDNH + HI+ICTE+EA +      +IT+ +L+ FLAI 
Sbjct:  391 DNINQ---SSDSDCENM-PNKRTRRCMRFPSSSEDEDGSNVPNQQTEIAADGTIWTRIEEGGVVGRLPIHSAFKDVHGPTAHAKRNIMKGNLSSAFLLLIDNHILEHIRICTELEASRVLGKTWTITQEKLKAFLAIL 524

HSP 3 Score: 48.1358 bits (113), Expect = 3.085e-52
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = -2 
Query: 2987 VTSFSSDFYARGVXXXXXXXXXXXLSNKWRSSFFSKTITVDKFMEMFRFIRIGNKEERSQRLKTD*F 3187
            + +F +  YARG Y+   L+  YL + KW  SFFS T++   F ++ R+IR   + +RSQRL+TD F
Sbjct:  517 LKAFLAILYARGAYEGNTLRLQYLWNKKWGPSFFSSTMSRRDFTDILRYIRFDKRNQRSQRLQTDKF 583

HSP 4 Score: 73.1738 bits (178), Expect = 1.406e-8
Identity = 44/87 (50.57%), Postives = 52/87 (59.77%), Query Frame = -2 
Query: 2213 KKPKRDPDTVAIYNKTKCEVDIIYHMAKKYTVKEGSADSPFTCFITFYIWKPSILRYWT---ETTGLNISRKNFLFELAEELPSDYQ 2464
            K  K+ P+TV  YNKTK  VD+   MA+KYTVK G    P   F  F I   + +  W     TTG NISRK+FLF LAEEL S+YQ
Sbjct:  770 KAAKKIPETVLFYNKTKFGVDVTDQMARKYTVKSGCRRWPLQVF--FNILDLAGINSWILYKNTTGENISRKDFLFRLAEELASEYQ 854
[Close]
BLAST of SMED30020656 vs. TrEMBL
Match: A0A1A9US35 (DDE_Tnp_1_7 domain-containing protein OS=Glossina austeni OX=7395 PE=4 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.028e-40
Identity = 104/257 (40.47%), Postives = 141/257 (54.86%), Query Frame = -1 
Query: 2283 WGKFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYMP---KNLE*SFCWYRTL*ANI**VA*RI*GKTKN-DHKIYMGEFVVLKLAEPYSCRGRNTTTDNLFTSISLAKKLLEIKTTXXXXXXXXXXXLPKLQR---DNMIQYSTKLYK*DEYVLTIYXXXXXXXXXXXXXXXKYENKKTQT*P*HSCNLQQNKV*G*YYLPHG*KIYRERGF------------------RR*PLHMFYNILHLEAINS*ILDRD 2978
            W KFIEN++ CYKPGA L IDEQLFP+KAR R +QYMP         F     + +          GK +  +  I +GEFV  KLA+PY+  GRN T DN FTS S+A KLL  +TTLV  +R N+R LPKL R   D+M+++ST LYK ++++LTIYK+K  KK+L+LSS H             S  ++ N +     +P   + Y    F                  +R PL +F+NIL L  IN+ IL ++
Sbjct:  208 WYKFIENSQNCYKPGAYLAIDEQLFPTKARCRLSQYMPNKPDKFSIKFWLASDVSSKYIVNGFPYLGKDEGRESSIPLGEFVTSKLAQPYTGHGRNITVDNFFTSASVASKLLAKRTTLVGTIRRNKRELPKLARQAKDSMVRFSTILYKSEDFILTIYKAKPNKKVLILSSMHS------------SVQIETNDI----RIPETIRFYNSTKFIVDVTDQIARKYSVKSKCQRWPLQVFFNILDLAGINAWILHKE 448

HSP 2 Score: 70.8626 bits (172), Expect = 1.028e-40
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = -3 
Query: 3220 ENSIEHCVDGTVWKPLKEGKGCHRMPAYSVFKDVSGLTAYVKRNIMLENVRSAFDLIIDNHKIA---HIKICTEIEA 3441
            E  IE  +DGTVWK +KEG    +   Y++FK+V G T Y KRNI+   V+SAF LIID HKI    H++  TE EA
Sbjct:   73 EKEIETVMDGTVWKKIKEGSNSGKTLIYNIFKEVLGPTGYAKRNIIKSRVKSAFSLIID-HKIMYNEHVREFTESEA 148

HSP 3 Score: 27.7202 bits (60), Expect = 1.028e-40
Identity = 20/49 (40.82%), Postives = 29/49 (59.18%), Query Frame = -2 
Query: 3035 SFSSDFYARGVXXXXXXXXXXXLSNKWRSSFFSKTITVDKFMEMFRFIR 3181
            +F    YARG Y+AK +   YL + KW  SFFS T++ + F   ++FI 
Sbjct:  165 AFIGLLYARGAYEAKNINLSYLWNTKWGPSFFSTTMSRNDFEVWYKFIE 213
[Close]
BLAST of SMED30020656 vs. TrEMBL
Match: A0A2R7VV36 (DDE_Tnp_1_7 domain-containing protein OS=Oncopeltus fasciatus OX=7536 GN=OFAS_OFAS002403 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.587e-32
Identity = 78/163 (47.85%), Postives = 101/163 (61.96%), Query Frame = -1 
Query: 2523 LISAKWGKFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYMPKN---LE*SFCWYRTL*ANI**VA*RI*GKTKNDHKIYMGEFVVLKLAEPYSCRGRNTTTDNLFTSISLAKKLLEIKTTXXXXXXXXXXXLP---KLQRDNMIQYSTKLYK*DEYVLTIY 2993
            +IS  W +FI N++ CYKP  N++IDEQLFP+KAR +FTQYMPK    L   F     + +          GK +      + EFVVLKLAEPY  +GRN TTDN FTSI LA+KL    T+LV  +RAN+R LP   K+++D M  YS+  YK  + +LTIY
Sbjct:    1 MISEIWNQFIHNSQCCYKPHENISIDEQLFPTKARCKFTQYMPKKPQKLGIKFWLAVDVQSKYVINGFPYLGKDEMRTSTPLAEFVVLKLAEPYLHQGRNITTDNFFTSIPLAEKLAAKSTSLVGTIRANKRELPKPAKIKKDKMKMYSSLHYKSGKSILTIY 163

HSP 2 Score: 58.151 bits (139), Expect = 5.587e-32
Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = -2 
Query: 2156 KRDPDTVAIYNKTKCEVDIIYHMAKKYTVKEGSADSPFTCFITFYIWKPSILRYWT---ETTGLNISRKNFLFELAEELPSDYQDEQNCFN*FPC-----VRRSCKIG 2455
            K  P T+  YN TK  VD++  MA+KYT K  +A   +T  + F I   + +  W    E TG  +SRK+FLF+LA+EL    + E       P       R++C+IG
Sbjct:  188 KHTPQTITYYNDTKFGVDVVDQMARKYTTK--AASFRWTLQVFFNILDLAAINAWILYKECTGSKLSRKDFLFQLAKELADKEKKEHKLDYNQPSPSTSQERKTCQIG 293
[Close]
BLAST of SMED30020656 vs. TrEMBL
Match: A0A3B3SZ47 (DDE_Tnp_1_7 domain-containing protein OS=Paramormyrops kingsleyae OX=1676925 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.578e-30
Identity = 86/254 (33.86%), Postives = 128/254 (50.39%), Query Frame = -1 
Query: 2292 LISAKWGKFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYM---PKNLE*SFCWYRTL*ANI**VA*RI*GKTKNDHKIY------------MGEFVVLKLAEPYSCRGRNTTTDNLFTSISLAKKLLEIKTTXXXXXXXXXXXLPKLQRDNMIQYSTKLYK*DEYVLTIYXXXXXX----XXXXXXXXXKYENKKTQT*P*HSCNLQQNKV*G*YYLPHG*KIYRERG-FRR*PLHMFYNILHLEAINS*IL 2993
            L+S  W +F++N+  CYKPG ++T+DEQLFP+K R  F QY+   P      F W          +A  +  K   +   Y            +G+ VVLK+ EPY  +GRN TTD+ FTS+ LAK L   KT+LV  +  +RR LP   +     ++T+  K +   LT+Y+ KA+K       + +S      +K++  P       + KV G   L    + Y  +   RR P+ +FYN+L L AIN+ IL
Sbjct:  258 LVSEIWERFVQNSIACYKPGVDITVDEQLFPTKTRCSFIQYIASKPDKFGIKF-W----------LAADVGTKYMLNGAPYLGKDETRRPGQRLGDSVVLKMVEPYLGKGRNITTDSFFTSLKLAKALQAKKTSLVGTINKSRRELPPCVKVQRSLFTTQALKSENATLTVYQCKARKNVCILSTVHTSVSITSGQKSK--PETVTYYNRTKV-GVDVLDQMVRKYSVKAPTRRWPVTVFYNMLDLAAINASIL 497

HSP 2 Score: 56.6102 bits (135), Expect = 1.578e-30
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = -3 
Query: 3166 EHCVDGTVWKPLKEGKGCHRMPAYSVFKDVSGLTAYVKRNIMLENVRSAFDLIIDNHKIAHIKICTEIEARKDN----*SITKAQLRVFLAI 3429
            E   DGTVW  ++ G+   R  + +V  +VSG TA+ KRNI  E+  SAF  +ID+  + HI+ CT  EA + N      IT  +L+ F+A+
Sbjct:  107 ETAKDGTVWTIIETGENSGRRQSQNVMTEVSGPTAHAKRNI--EDALSAFLCLIDDVMLKHIRDCTVAEAHRVNEDSSWDITVDELKAFIAL 196

HSP 3 Score: 40.4318 bits (93), Expect = 1.578e-30
Identity = 20/65 (30.77%), Postives = 36/65 (55.38%), Query Frame = -2 
Query: 2987 SFSSDFYARGVXXXXXXXXXXXLSNKWRSSFFSKTITVDKFMEMFRFIRIGNKEERSQRLKTD*F 3181
            +F +  Y RG    K +  +   S+ W  +FF +T++ ++F E+ RF+R   KE R  R++ + F
Sbjct:  192 AFIALVYVRGAQGGKGMDLVSFWSDDWGCAFFKETMSRNRFQEIMRFLRFDKKETRRTRIQDNKF 256
[Close]
BLAST of SMED30020656 vs. TrEMBL
Match: A0A2R7WB04 (DDE_Tnp_1_7 domain-containing protein OS=Oncopeltus fasciatus OX=7536 GN=OFAS_OFAS006958 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.153e-30
Identity = 78/212 (36.79%), Postives = 108/212 (50.94%), Query Frame = -3 
Query: 3070 ELLKRMTNVNED*PGSDSDINELFES-EEFDNINEIED-----SNDSGNENYH----KRKRTRXXXXXXXXXXXXXXENKENSIEHC-----VDGTVWKPLKEGKGCHRMPAYSVFKDVSGLTAYVKRNIMLENVRSAFDLIIDNHKIAHIKICTEIEA---RKDN*SITKAQLRVFLAIFMLEVCIKQRP*KRYIYCQINGDPVFFRKQ*P 3651
            ++LK M +V+E+  GS+ D NE+ ++ +E  N+   E      S+DS  EN      +RKR RI+SD+E E+E T     +NS   C     VDGT+W  LK G    R P + +FKD++G T Y KRN+M  NV SAF LII  + I HIK CTE EA    K + +I   +L  F+ I       +      +        P FF    P
Sbjct:    7 KILKNMVSVSEEFSGSEEDENEMIQNKDEIQNLESDESMQAGKSSDSEKENQQNLGLRRKRMRILSDSESENETTIPILSQNSDAFCETEIAVDGTIWTKLKMGGSSGRSPVHKIFKDIAGPTGYAKRNVMEGNVSSAFHLIITKNMIEHIKFCTEEEACRVLKTDWNILTTKLLSFIGILYARGAYEANSLNAFYLWSKEWGPAFFSNTMP 218

HSP 2 Score: 68.1662 bits (165), Expect = 2.153e-30
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = -1 
Query: 2862 LISAKWGKFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYMPK 2993
            +IS  W ++I N++ CYKP  N++IDEQLFP+KAR +FTQYMPK
Sbjct:  248 MISEIWNQYIHNSQCCYKPHENISIDEQLFPTKARCKFTQYMPK 291
[Close]
BLAST of SMED30020656 vs. Ensembl Cavefish
Match: ENSAMXT00000039501.1 (pep primary_assembly:Astyanax_mexicanus-2.0:19:21564630:21575712:1 gene:ENSAMXG00000031759.1 transcript:ENSAMXT00000039501.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 78.1814 bits (191), Expect = 4.347e-17
Identity = 78/240 (32.50%), Postives = 125/240 (52.08%), Query Frame = -1 
Query: 2292 LISAKWGKFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYMPKNLE*SFCWYRTL*ANI**VA*RI*GKTKNDHKIY---MGEFVVLKLAEPYSCRGRNTTTDNLFTSISLAKKLLEIKTTXXXXXXXXXXXLPKLQRDNMIQYSTKLYK*DEYVLTIYXXXXXXX--XXXXXXXXKYENKKTQT*P*HSCNLQQNKV*G*YYLPHG*KIYR-ERGFRR*PLHMFYNILHLEAINS*IL 2993
            +IS  + KF++N+   Y PG N+T+ EQLFP+KAR RF QY+    +    ++    A+   V        K++ K+    + + VV +L EP+  +GRN TT   F S++LA  LL  KTT+V  +R +++  P+  +     ++TK+ +     LTIY++K K+   +L    +    +   Q  P +S +   N       L     +Y  + G RR P+ +FYNIL L AIN+ IL
Sbjct:  673 MISELFYKFVQNSIASYVPGENITVGEQLFPTKARCRFAQYVLNKDKFGLKFWVAADADTKYVLNIFPYLGKDEGKLSGQRVKDSVVTRLVEPFLDKGRNITTSGFFPSLALASHLLVNKTTVVGTIRKSKQETPQCTQTQSEIFNTKVLRTGNTTLTIYQAKPKENVCVLSTMHQTVSVDNSEQKLP-NSISHYYNTKFTVDVLDRMAHLYTVKNGTRRWPVAVFYNILDLAAINAHIL 911

HSP 2 Score: 32.3426 bits (72), Expect = 4.347e-17
Identity = 20/65 (30.77%), Postives = 34/65 (52.31%), Query Frame = -2 
Query: 2987 SFSSDFYARGVXXXXXXXXXXXLSNKWRSSFFSKTITVDKFMEMFRFIRIGNKEERSQRLKTD*F 3181
            +F +  Y RG+   K +K     S+   +  F KT+T  +F ++ R +R  +K  R+ R +TD F
Sbjct:  607 AFVALTYMRGITGGKTMKLDDYWSSDLGNPIFLKTLTRQRFRDIMRHLRFDDKNTRAARHETDKF 671
[Close]
BLAST of SMED30020656 vs. Planmine SMEST
Match: SMESG000006821.1 (SMESG000006821.1)

HSP 1 Score: 114.005 bits (284), Expect = 7.324e-28
Identity = 66/112 (58.93%), Postives = 77/112 (68.75%), Query Frame = 1 
Query: 9286 LKNYHN--NYENIAAYENLHSGTIYSIIDTFKKTGRTAAIPRGGLRHSKVNEE----VKDIVKKSCRQRL---*SRVLDILGINISNPTILKGLKDFHYS*KLFKEIPQRRN 9594
            ++ Y+N  +  +IAAY NL S  IYSIIDT KKTGRTAAI RGG RHSKVNEE    V+++V   C   L    + VLD LGINISNPTI   +KD HYS KL K+IPQR N
Sbjct:   92 IQAYNNGQSVSSIAAYGNLQSSNIYSIIDTLKKTGRTAAISRGGSRHSKVNEEVNEFVRNLVDNDCTLSLRCVGAAVLDSLGINISNPTIHNYVKDLHYSLKLIKQIPQRNN 203
[Close]
BLAST of SMED30020656 vs. Planmine SMEST
Match: SMESG000046694.1 (SMESG000046694.1)

HSP 1 Score: 103.99 bits (258), Expect = 3.709e-23
Identity = 78/136 (57.35%), Postives = 92/136 (67.65%), Query Frame = -3 
Query: 3259 SSKDMELLKRMTNVNED*PGSDSDINELFESEEFDNINEIEDSNDSGNENYHKRKRTRXXXXXXXXXXXXXXENKENSIEHCVDGTVWKPLKEGKGCHRMPAYSVFKDVSGLTAYVKRNIMLENVRSAFDLIIDNH 3666
            S K MELLKR+TNVN+D  GSDSDINEL  +E + N              Y KRK+  IIS+TE EHEIT+ E++ENSIE   +GT+ KPLK+   C R+PAYSV KDV G     KRNIM  NVRSAFDLIID+H
Sbjct:  202 SLKVMELLKRITNVNQDQSGSDSDINELCGNENYRN-------------TYLKRKKMCIISETESEHEITEAEDEENSIERYGNGTLSKPLKKDGDCGRIPAYSVLKDVFG----PKRNIMHANVRSAFDLIIDDH 320
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BLAST of SMED30020656 vs. Planmine SMEST
Match: SMESG000046694.1 (SMESG000046694.1)

HSP 1 Score: 103.219 bits (256), Expect = 1.250e-22
Identity = 79/141 (56.03%), Postives = 94/141 (66.67%), Query Frame = -3 
Query: 3259 SIID*SSKDMELLKRMTNVNED*PGSDSDINELFESEEFDNINEIEDSNDSGNENYHKRKRTRXXXXXXXXXXXXXXENKENSIEHCVDGTVWKPLKEGKGCHRMPAYSVFKDVSGLTAYVKRNIMLENVRSAFDLIIDNH 3681
             I+  S K MELLKR+TNVN+D  GSDSDINEL  +E + N              Y KRK+  IIS+TE EHEIT+ E++ENSIE   +GT+ KPLK+   C R+PAYSV KDV G     KRNIM  NVRSAFDLIID+H
Sbjct:  197 GIMGKSLKVMELLKRITNVNQDQSGSDSDINELCGNENYRN-------------TYLKRKKMCIISETESEHEITEAEDEENSIERYGNGTLSKPLKKDGDCGRIPAYSVLKDVFG----PKRNIMHANVRSAFDLIIDDH 320
[Close]
BLAST of SMED30020656 vs. Planmine SMEST
Match: SMESG000035129.1 (SMESG000035129.1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.120e-13
Identity = 51/114 (44.74%), Postives = 62/114 (54.39%), Query Frame = -2 
Query: 2156 KKPKRDPDTVAIYNKTKCEVDIIYHMAKKYTVKEGSADSPFTCFITFYIWKPSILRYWT---ETTGLNISRKNFLFELAEELPSDYQ------DEQN--CFN*FPCVRRSCKIG 2464
            K  K+ P+TV+ YN TK  VD+   MA KYTVK GS   P   F  F I   + +  W     TTG NI RK+FLF+LAEEL S+YQ       E N    N    VR+ C+IG
Sbjct:  196 KAAKKLPETVSFYNNTKFGVDVTDQMALKYTVKSGSRRWPLQVF--FNILDLAAINSWVLYKNTTGENILRKDFLFQLAEELASEYQTSRKKPHETNIPTINATVLVRKWCQIG 307
[Close]
BLAST of SMED30020656 vs. Planmine SMEST
Match: SMESG000031831.1 (SMESG000031831.1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.477e-13
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = -2 
Query: 2159 PDTVAIYNKTKCEVDIIYHMAKKYTVKEGSADSPFTCFITFYIWKPSILRYWT---ETTGLNISRKNFLFELAEELPSDYQDEQNCFN*FPCV------RRSCKI 2446
            P+TVA YNKTKC V ++  MA+KY+VK GS   P   F  + I     +  W    E TG+NISRKNF+F+LAEEL +D +D  +     P        R+SC+I
Sbjct:  165 PETVAFYNKTKCGVYVLDQMARKYSVKTGSRRWPLKVF--YNILDLEAINAWILYKEVTGVNISRKNFIFQLAEELANDNKDAPSTSFKLPSYILNIRNRKSCQI 267
The following BLAST results are available for this feature:
BLAST of SMED30020656 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020656 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020656 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020656 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020656 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
npffr22.154e-1533.61neuropeptide FF receptor 2 [Source:Xenbase;Acc:XB-... [more]
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BLAST of SMED30020656 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020656 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020656 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
H9IWL23.085e-5240.15HTH La-type RNA-binding domain-containing protein ... [more]
A0A1A9US351.028e-4040.47DDE_Tnp_1_7 domain-containing protein OS=Glossina ... [more]
A0A2R7VV365.587e-3247.85DDE_Tnp_1_7 domain-containing protein OS=Oncopeltu... [more]
A0A3B3SZ471.578e-3033.86DDE_Tnp_1_7 domain-containing protein OS=Paramormy... [more]
A0A2R7WB042.153e-3036.79DDE_Tnp_1_7 domain-containing protein OS=Oncopeltu... [more]
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BLAST of SMED30020656 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSAMXT00000039501.14.347e-1732.50pep primary_assembly:Astyanax_mexicanus-2.0:19:215... [more]
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BLAST of SMED30020656 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020656 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020656 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020656 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020656 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000006821.17.324e-2858.93SMESG000006821.1[more]
SMESG000046694.13.709e-2357.35SMESG000046694.1[more]
SMESG000046694.11.250e-2256.03SMESG000046694.1[more]
SMESG000035129.11.120e-1344.74SMESG000035129.1[more]
SMESG000031831.11.477e-1343.81SMESG000031831.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30020656 ID=SMED30020656|Name=SMED30020656|organism=Schmidtea mediterranea sexual|type=transcript|length=9812bp
CTCGAATCTAGTATAATAATTATTATTTCCCTATCTTGTTTATGCGTTTA
TTTATCTAACAAATTCATTGTAATATTTGAAATAAAATTCAATTTGTCAA
AAGTTCTAATTGTTGAAGCTGAAAAATGAATGATAATCGATTTACTATTA
TAATGGAGCATTCATAGTTGATGTCCCATGCATATGGATGAAGGTAGAGT
TTATCAGAAAATATCTCCAAATTTCTATTAAAACATTAATTCGATTGTTC
CTTTTATGTTGCATGAGCAATATCATATGGGCAATCTGGGCAGACTTGAA
GTTTAACGGTCCCACTGAAATGATATGTAGTGAGAACAAATTGCGTAAAA
AATCAAACTATCACTGAATGATCAGACAAGTCGAGCTACTCAGATGCAGA
AAAAGACATCAGGTTATGGGACCAAAAGCAACATGAATAAATGAATTGTG
AAAGATTAAAATGTCTGTTTTCAATAAATGAAGCTTTTCGTATAGATACT
CGTGTTTCTCTAAGTGTTGGACACCTCCGCACAATCCCATATTTCAGATC
ATTTCGTTTCACTTGGGTCATGGCAGAATGAAATGATGCTATGATAGGCC
TAATACGCAGAAATTGAATGATAGTTGTATTATCATTTACTCATTGTAGA
AATGAGTAATCTACATGTCTACTATGATTTGCTGTGGATTATGAAATACA
AAACGTCTCACTATTCAAAGCGGTGTTATATAAATGTTCACACTGGCATA
AAAATTACTTGAGGGGCCGTTAGATTTCATGTCTACCGGCAATCTGCTTA
GTTTTGCTATACTACTGTAACATTGTTACTCTCTGGAACTAAACAGTTAT
AACCCATTTCCTCACGAGTATATTTTATATCCTTCAATCATCAAGGGAGA
CTGATTGTCAAAATAGGGGAAAATGTTAAAACATTCGGTTTTGGGTCTTG
ATTTTTAGAGAAATTCAGGAAGAAGCTTCTCTTGTGAAATTCTGATTAGA
AAAAAACTGAAAACTATGAAAAAGCAAATAAAATAATATTTCACTAAAAA
CAAAGAAATCGTTTTTTCAAAAATGCTTCGAAAAGCTTAGGCCATCAACT
GATCGACATAATAGATGTAGTTCTTTCTTCGGACCAAAAATGCTGTTGCT
TGCAACAACGCAAAGTTTGAAATAGGTTCATCATTGAATGAAAATACATA
AATTTGTCTTTCTAAGATCTGAGAAGAATTGTTGCTTTAACAAATAGAAT
TTTTCATCTACTTCATAAAAATAAGTAGAATGAAGTGAAAAATGAATTTA
TTCTAAGAGACTTCTTGAATTTATGCTCATTTCACTGTCATTAAGCATCA
CAAAATTTCAAACTTAAAAGTTATTCAATTGCTCATTTTGACAAAAGTTT
TATAAATCCAAATCATTTAATGTCAATAACACTTAGCAAAGACAAACTCG
AAGAATAATTTTTTCTTAAAAAGATATGATCAATTGTTTTTATGGTTCTA
AACGAAATAGTACGGACAAAATGGTATAAGTTTTGAATAAAATATTGGAT
AAATATTTACTCATTCACCAAAGTATTATAATATGGTGATGTAAATGTTT
GGATAAATATTATATTAATAAAAAATTTCTATAATTTAAATAAATACAAA
TAAGTTAGTGATTTGCAAGCATACCATTTTGACTGGACCCCGTTTTAATA
TGTCATGAGATTCATTTACCGACATTGGCTGAAATCCGTCAATTTGACGG
GTGTGTTAAAATGCAATTTTTTTGTAAATTATTTATTAAAAAGCTATAGA
TTTTTATTCATTGTTATCTTCAATACATTTTTACCTGTAATCTCTATTCA
ATGTACACTTTTCGCATAATACGAATCAAAAGAAATGAAAAAGAAAATGA
TTGAAAAAGCTATCTATAGGTCTAGATAAACATGACCACCGCAGAAATTT
CAACAACGGTTAGAAACAAAAGAAATGCAAAAAAAACGATGAATTGTAGA
CTCATCTAAAGTGACCAACTAAGCCCACCTGAAGGAAATTGTAAGGCATC
TAATAGAGTCAAAACTCACTATAAATATCATCTGATATTTATAAGTGACT
AAAGGAAAAACTAGTAGTAAAAACAAATTAATACAAATAATGTTAGACAT
ATTTTTCCAATTTTGCAAGATCTTCGTACACAAGGGAACTAATTGAAGCA
ATTTTGTTCATCTTGATAATCGCTAGGCAATTCTTCAGCTAATTCAAAAA
GAAAATTCTTCCGAGATATATTTAGTCCAGTAGTCTCTGTCCAATATCTA
AGAATTGATGGCTTCCAAATGTAAAATGTTATAAAACATGTGAAGGGGCT
ATCTGCGGAACCCTCTTTCACGGTATATTTTTTAGCCATGTGGTAGATAA
TATCAACCTCACACTTTGTTTTGTTGTAAATTGCAACTGTGTCAGGGTCA
CGTTTGGGTTTTTTTGTTTTCATATTTATGTTTAGAACTGAGCAATAATA
TCTTTTTCTTTGCTTTTGATTTGTAAATTGTGAGTACATATTCATCTTAT
TTATAAAGTTTTGTAGAATATTGGATCATATTATCCCTTTGCAATTTTGG
CAAATTCCTTCTATTTGCTCGTAAATTTCTCACAAGAGTTGTTTTTATTT
CAAGCAACTTTTTTGCAAGGGAAATACTTGTGAATAAGTTGTCGGTAGTC
GTATTTCGACCACGGCATGAATATGGTTCAGCAAGCTTGAGCACAACAAA
TTCGCCCATGTATATCTTATGATCGTTTTTCGTCTTTCCCTAAATACGCT
ACGCCACTTATTAGATATTTGCTTATAAGGTCCGATACCAGCAAAAACTT
TATTCCAAATTTTTTGGCATATACTGTGTAAAACGGCTCCTCGCTTTGCT
TGGGAACAATTGTTCATCAATTGTAAGATTCGCGCCAGGCTTGTAACAAA
CCTTATTATTTTCGATAAATTTACCCCATTTTGCAGAAATTAATCTGTTT
TTAATCTCTGACTTCGTTCTTCCTTATTGCCAATGCGTATGAATCGAAAC
ATTTCCATGAACTTGTCTACGGTTATTGTTTTCGAAAAAAAACTGGATCG
CCATTTATTTGACAATAAATATAACGCTTTCAAGGCCTTTGCTTTATACA
CACCTCGAGCATAAAAATCGCTAGAAAAACTCGTAACTGTGCCTTTGTAA
TCGATCAATTATCTTTACGTGCCTCTATTTCAGTACATATTTTTATATGA
GCAATCTTATGGTTATCAATTATGAGATCAAAAGCACTTCTTACATTCTC
AAGCATAATGTTTCGCTTTACATACGCAGTTAGTCCAGACACATCTTTGA
ATACACTATAAGCTGGCATTCTATGACACCCTTTACCTTCTTTTAGTGGT
TTCCATACGGTTCCATCAACGCAATGTTCAATCGAATTTTCTTTATTCTC
AGTATCCGTTATTTCATGTTCGATTTCAGTATCTGAAATAATACGCGTTC
TTTTTCTTTTATGATAATTTTCATTCCCACTGTCGTTAGAATCTTCGATT
TCGTTGATATTATCAAACTCCTCACTTTCAAATAATTCATTTATATCTGA
ATCCGATCCAGGCTAGTCTTCATTTACGTTGGTCATTCTTTTAAGCAATT
CCATATCCTTTGAAGACTAGTCTATAATACTGCAGTTTTAACCAAAGAAG
ATCAAGTATCATTATGCATAAAGAAAGAATTATCTTACTTAGCTTCAAGT
ATAAGCGGTAAAAAGTTAACCCTAAAGTTAAGAAAATCCGCAAACCTATA
ATGTTTAAAAAAACGTTTCATTAATGTTATTGGACAATGTTCCCCTTCAT
CTATTCAAATTAGAATTGTCTAATATTCAGTTGTTTTATTTTCCTCCGAA
TGTGAAGGCTCTAATCCAGTTGGATCAAGGAATTCAAACCTTAAAACATT
TTTTTAAAAAAATAATTAACGAAGTTTTAGTAATTTTAATAGGCTTACCT
CAATAAGGCGCGTACAGAAAGGTTTGAATATAAAATTCAACACTCTTTCA
TAAAATATTACTAGCTAATTCATATATTCATTTACAAATATATGATTTTT
AGACACCTAGTTCAAATTACGCCATTCACAATTCGGTATATATTACTCGA
TTTTTATCCGCACTTTTATTAGTGGATACCATTTTAATTAAGGACTGGGA
ATGTGTTACTGAACTAATAATCACAAATTACTTTTAACATACATTGAAAA
ATCGACTACTCAAAAAAATCAAACAAGGATATTTTGATAAAAGGATGGAT
TTTTTTTACCTGAATTTGATACAAATTTGGATAATGACACGCGGAAATTT
TATGTTGTAATGAATTGCTGAGAAAAATAATTCGATCGATAAGTCGAGTT
TGTGTAAACGCGAAGGAAGTTCTAACCGTGACGAATAAATGACTAATTCT
GCAGAAGCTTGAGAAATTTAAATACTTTTTTCCTGAATAATATCCCTGAT
CAATTTAATGACATTCAAATGCTCAAGAATGAAATAATGCGAAAAAAAGA
AGGCTAAGATTACGGATTATTTTTTTAAATGTAGAATAAAGTTTTTTGTG
AGTGTTCATTCCCTATATAGGAACGTCGTATATTAAAAAAAATGCTGGTG
TTCAAGTTAGACAACTTTTACTGTATTTAAAATTATGTAATATTTGTGTT
ATTTTCATCAATATAGAATGAGGTTAGAGTCCTCAGGCAAAATTGGTAAC
TGTAAGTCAAAAGTTATAGGTTCTATTAATTTATATATTTCTGTATTATA
AACAAAAAATTATGTAAAAGACTCAATAAAAGGTTAAAATGATACTCATT
AAATAAACACAGGAAGATGTTTAAAGTCAAAAGCCTAAAATAATATTCTT
AGAATGGCTAAAAATAATACAAGAAAAAGTCAACAGAACTTAGAATTTAC
TCAGTTGTTCCTTGACAATTATTTTTGGGATGGAATCACAGCGCTATAGT
ATTTAATGGCCTGGAGAAACTAGTAACGTGGCGTCTTTAAATATATTCCA
TCTCAAGTGAATTCGTGTTAAAAAATAAAACAAAGTTCATAGTTTGAAAA
TGGTGGAAAATAATGTTTTTTGAGAAAAAAAATAAAATATGAAAATGAAA
ATAGGTATGTTAAAAAAATAAGGTTTTGCGTATAAATTAGGAATCACAAA
AGAATGTATAGTTTTCCAATTTTGGTATTAATGAAATTTTATTTGGAATT
TTTCAATTATTTCCATTTTATAATTTTGCAAAGAAAACAGAAAAGTTGAA
ATGAAATTCAATTTTTTAGGTTCGTTGGTTCAAAAAATGCTCAATCAATT
TTCCATTTATGTTAGTGAAATTTTTAATTTAATAAGTTCATGTATTTTCC
GTGTTCAAAGAAACACGGAAATAATAGCGATACCGGAAGCTGGTTTAAAT
ATAGGCAATGAGGAAGAACATTTGGTAATTCCTATACAAGAAGGTTTAAA
TGAATTTATTGAATCCATGGACTTGTCAAGTCAAGTTTTCTTTCATATCA
TTGAACATCAAATGGTTTAATTATCAAAAAAGAAACTGTACAATAAATTA
AAAGTAGAAAAACACAAAAAAATGCTTATTAAGAAAGTTATCAAAATTAT
TTCGAAAAAAATAAAGCTATTATGAATTTCTCACATAACTGTAAATATTG
TACTTATTTTGATGATGAATGCGTGTAATTGCTCCCTGCCTATTGGCCGC
TGTAGATTTGTTTCGTGGAATTGATTTCTTTGTCTAAAACTGAACATTAT
GTTGGGCTTAAAGAAATGTGGCCGTGAAGTATGTCGAATGGATTTAGGAA
GAGAAGAACCGATAAACTCCCGAAGAATCAAAAGGTTGTAGAAATGAATC
AAAACCATTCGCAAAATCGAAGCCAAATTTCTAGAAGCCAAAGAAAAAAT
TCATGAAATAGCACACATGAAATCTTGCATCCAATGGAGCCCAATGAGCA
TTATAGTACACCACAATAATAACAAAAACAAATTGCAGAAATCGTACCTG
TTATGTATAGAACTATGTCAATGAACTATTTATCAACAATTTCTATAAGT
AAATTTGTAATTTACAGACTACAATAAATCATTCGACTCTCTTTATTGTG
CAATGGAACCTGTTCAATTTTAGTCAATATATATTCAGTTTATGGTTTTC
GTTTCTATAATTTAATACTAAATTTATGACGGTGGGTCAAATGGCCATTT
TTAAACTTTCTTAAATGCAATATATATTTCAATTTCTCGTTAATTTTAGC
AGTTATGCGACTGGACCTACCTAGTGCAATAGGTTATTTGACCCGTCGTT
ATAAATTCTGAAAATCAGGTTTGCTACTACATAATTTGATTGCATTGTAT
CTTACTTATTGATAACAATTAACTGTTAGATTTCATTTTTACTGAAATGA
TTTCAATCTATACTGTTAATACTCGAGTCAAAAATTCTTATTTTATTGCT
GTCCTGATAATTTTCATCTTTCGAATATTGAGAAATTCAAGATATTCCAA
ATTATTACTAAAAAGTAAGTTTTAGAAGAGCATTTGGATCCAGTCAAGAG
GGAAAGTGAAGTGGATAACAGAATAGTACAAATTCAGAGAAAATATCAAG
CATTGTTACAAGCCTGGTTATGATATTACTATTAATGGACGAATGGCCGA
TTCACTGAATTTATGACAAACAAGTCTGATAAATTGAGAATAAAATTCTG
ACTACAGTCTTCTCTCGAATACGAGTATCAGTTTTATTCAATTACAACGA
GCGCCCGCTTTGTTAGGACTAATTTTTACTTTAAGTTTAAAAAAATTAAC
TAAAACAAACCAAAAGTATGTTATATTTCGATTTTCCTATTTAAATGATT
TTAATTTTTTCTCCACAAGAAAGATTTTTTCACAAAAGAAAGAATTTATC
CTCCATAATATTCACGAGATGAGATTTTGGGTGTGGCAAAGTATATTGAG
ACTACACAAAGAAATACTTGAGAACATGTTTAGAATATAATATCCATAAA
TACAAAGAACTAATAGTGTTAAGGGTGTCGATTAAAATGGTTTGAATTTT
GCCAAAAAAAATCATATACTCTTCAATATAAACTTGGAGTGTTAAATGAA
TTTAAACTGAATGTGACGAAAGTTGATATTTTTCTCAGCAAAAACAATAT
TTCAACTTTTATAATAGACGATTGGGCAAAGCTAAAGTATTCACTTTTAC
AAATGGTAAATTATCTAAAAATCATCTGTTGCATTATCTCGCCGATTAGG
TCCCGGGAAAAAACCATTTTATCCATAACTAGATAGAAAATTAGAAAATT
GAATGAAAAAATGATAAAGGTTTGCGAGTGACTAATAAACATATTTAATG
GCAAAGGAATTTGCTACTGAACTAAAAATTATGGAATATCAAACTAATTC
ATAATTTTAAGGAAATATAACATTTGGGGGAAAATATTTTACAAGAAAAT
GCAAATTATTTAGCGTTCGAGTTTATATTACATGACAAAATATAATATAA
AAATTTGTAATATTTTGAATATGTATCAAGGACCTCATTACTATAAATTT
GATCACAAATGCGAATTCATAAAAATTTATGAAAAAACTAGAAATTGATT
AAAACAAGAACTAATGATACAGAAAGATAATTAATCCCAGTTACGACTAA
TAGAATGGTAAAGTGACGTCAAATCTGTCGGGTATTCAAGGATTTGTATG
TGAAAATACATTGAAGCTATATTAAAAATGAATTCTACCTGCCCATTGGT
TTTCAGCCGCATTATACTGTTTCGGCGTGGTTGCAATAACACATCCATTA
GTAAGAAAGCAAGATTATTAAGTTTTTCGAGATCAATGTTGAATCTCTGA
AACCGAAAACAAATTTCAATCACGAAACAAACAATATAAACTGTCGATAA
TCATAAAATAACAGCTTTTATATATATTGTTGGATTTTATTGCCTATGGT
TACTACTTTAAAGGGTGCTTGAAATTAAAAAAAAAGATAAATGAAATTGG
TAAATAATGCTTATGTAAATGGTTTAATAGCGCCGATAAAAATGTACAAT
CTTTTATATTTGTTTATATTGTTATTTCTGTATATTTTTAATCAAAATGT
TAATATTTAACGAAACGCAGATTCTTATTCATGTTTTAAAGAGAAGATAG
ACTACTAAAGAAAACTGCATAAAAATCGTTCAGATAATCGTTCAGGTGGA
CAAATAACCTCTTATTTGATCAAACATTTCAATCAAATTTTTTAAACAGA
AATTGGTCTTTCATAGGCGAAATTCATCAATCCTATCAGTTTGATTTCTT
TTGTAGAAGGTTTTAGTTTTGGATAACAGCTTTCTAGGGAAGCTACATTA
ACCGCGTCTTTTTGTTAAAATCTTAGAGGGTAGAAAATTAGGAAACGTTT
CAGCCGTATCTTGGCTGCAAGCGATCGCGTAAATTTTTGGCACTCCTCGT
CTTGATTATTCACCTTTCAGTGAAGCTGTATATAAATTAAAATCCAGCTA
GTCACTTAGAGATATCTTAGAACGGTTGGACATAACTGATATCGATACTC
AAGAAAAAAACAATTTTTGCGGTGTATCAGTTTTGACATTCCTATTATTA
TTCAAAACATTGTATATTTATTTATTTAATAAACTTTGTTGTCTTATTTA
ATTTGTTATACCCTGAAGGTTATAAATTCGAAGAAATTTGTGTTAGTTTT
TTTCTAAACCTGTAATGAGTCAAATATAATTCACAAGCAACCCATGTTTC
CTTACTGGGATAATAGAGAATTTCAAATCATTTTTCATTGATGTTAGCAC
AGTTTTCATGTGAGAAGCTTTTGACCAAATAATCTGAATTGTCGAAAACC
TAATCACAAAAGAGAATTCATGTAGAAATCAAAGAATAAACATCCACACA
GATTGAATTTACAATAAAATACCAAGGAAATCATCAATGTATGCCGTGGA
AAGCTGCCAGTGATGATAATGAAAGAATGGACGGAGCTAAAAGTGGAGTC
AGAACCAATAAACTGAACCAAAGGTATACTAAAAAGAAAATTTGTAATTA
ACAAAACATAAAGCAGTATTGATTTGGGAGTTTTAATAGGACAAACATGA
TAAATTCTTTAACCGATGTTGAGCAAAATCATTAATTAAAAAATTCCGTT
AATTAATATATACATACAAGGTTTTTTGGGCTTTTAAAGTTCAATTTCGT
ATATAATTTGAATAACATTTTCCCCTGTTATGTAACTTAAAAACTATCAC
AACAACTATGAAAATATAGCAGCATATGAAAATTTACATAGTGGCACTAT
ATATAGTATCATTGATACTTTTAAAAAGACCGGAAGAACTGCTGCAATTC
CAAGAGGTGGGTTGAGGCACAGTAAAGTAAATGAGGAAGTAAAAGACATT
GTAAAAAAATCTTGTAGACAACGACTGTAGTCTCGTGTTTTAGATATCCT
TGGCATTAACATATCTAATCCCACAATTCTAAAGGGCCTTAAAGATTTTC
ATTATTCATAGAAGCTTTTTAAGGAAATTCCTCAAAGAAGGAATCTTATT
GTTAACTGTGAGATTTGATATGTTAATGTCAAGGATTGAGTACAGTCAAT
GTCTACAAGATTTGAATATATTTTCACATCGAGAATATTTTGTGCCGATA
ATTTTTGAACCCCGAAAAAACCTTTCCATCGGATAAATTTGTTTTTCTTG
GTGAAGTAGGATTCAACATAAATTTTTGAAAAAAACACGGATAAGCTCCA
GTAGGATCAATA
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protein sequence of SMED30020656-orf-1

>SMED30020656-orf-1 ID=SMED30020656-orf-1|Name=SMED30020656-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=119bp
MNMYSQFTNQKQRKRYYCSVLNINMKTKKPKRDPDTVAIYNKTKCEVDII
YHMAKKYTVKEGSADSPFTCFITFYIWKPSILRYWTETTGLNISRKNFLF
ELAEELPSDYQDEQNCFN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000028Category 2 cell
PLANA:0000101muscle cell
PLANA:0000140anterior region of the whole animal
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR029526PGBD