SMED30020656
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30020656 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 12
Alignments
SMED30020656 aligns in the following genomic locations:
Homology
BLAST of SMED30020656 vs. Ensembl Xenopus
Match: npffr2 (neuropeptide FF receptor 2 [Source:Xenbase;Acc:XB-GENE-994428]) HSP 1 Score: 75.8702 bits (185), Expect = 2.154e-15 Identity = 80/238 (33.61%), Postives = 115/238 (48.32%), Query Frame = -1 Query: 2292 KFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYM---PKNLE*SFCWYRTL*ANI**VA*RI*GKTKNDHKI-YMGEFVVLKLAEPYSCRGRNTTTDNLFTSISLAKKLLEIKTTXXXXXXXXXXXLPKLQRDNMIQ--YSTKLYK*DEYVLTIYX----XXXXXXXXXXXXXXKYENKKTQT*P*HSCNLQQNKV*G*YYLPHG*KIYRERGF-RR*PLHMFYNILHLEAINS*IL 2972 +F +N + PG ++TIDEQLFP+K R FTQY+ P F R L A GK + K + E VV+ L EP+ GRN TTDN FTS+S +LL+ KTTL+ + RR LP+L +D + +ST + + LTIY + +N+K + P + K G L ++Y R RR P+ ++YN+L L A+N+ IL Sbjct: 74 RFNKNCAESFTPGEHMTIDEQLFPTKVRCPFTQYVATKPDKFGIKFWMARDLETKYVCNASPYLGKDPSRQKGERLAENVVMNLMEPFLDEGRNVTTDNFFTSLS--HRLLQHKTTLLGTVNKVRRELPQLAKDTAQREVFSTSVLRSGSVSLTIYAPKKNLTVCVLNSMHQDVTIGDNRKRK--PNTITDYNHMKC-GVDVLDQMARMYSVRAATRRWPVAVYYNMLDLAAVNAYIL 306 HSP 2 Score: 29.6462 bits (65), Expect = 2.154e-15 Identity = 13/43 (30.23%), Postives = 26/43 (60.47%), Query Frame = -2 Query: 2987 WRSSFF----SKTITVDKFMEMFRFIRIGNKEERSQRLKTD*F 3103 W +F +T+ D+F+ + + +R +K+ R++R+KTD F Sbjct: 23 WSENFLVPVIKETMPRDRFISIMQHLRFDDKDTRAERVKTDKF 65
BLAST of SMED30020656 vs. TrEMBL
Match: H9IWL2 (HTH La-type RNA-binding domain-containing protein OS=Bombyx mori OX=7091 PE=4 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 3.085e-52 Identity = 108/269 (40.15%), Postives = 153/269 (56.88%), Query Frame = -1 Query: 2226 LISAKWGKFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYMPKNLE*SFCWYRTL*ANI**VA*RI*G-------KTKNDHKIYMGEFVVLKLAEPYSCRGRNTTTDNLFTSISLAKKLLEIKTTXXXXXXXXXXXLP---KLQRDNMIQYSTKLYK*DEYVLTIYXXX--XXXXXXXXXXXXKYENKKTQT*P*HSCNLQQNKV*G*YYLPHG*KIYRERGFRR*PLHMFYNILHLEAINS*ILDRDYWTKYIS-EEFSF*IS*RIA 2993 L+S W KFIEN++ C+KPGA +T+DEQLFP+KAR RFTQYMP N F L +++ + G +T+N + EFVV+KL EPY+ +GR TTDN FTSI LA KL T+L+ +RAN+R LP KL++D+M ++ST LY+ + LT+YKSK K +L K+ +K + P + K K + G RR PL +F+NIL L INS IL ++ + IS ++F F ++ +A Sbjct: 585 LVSPVWDKFIENSQNCFKPGAYITVDEQLFPTKARCRFTQYMP-NKPHKFGIKFWLASDV-ETKYVVNGFPYLGKDETRN-ASTPLSEFVVMKLLEPYTMKGRTVTTDNFFTSIPLALKLRSKSTSLLGTIRANKRELPKICKLKKDSMARFSTLLYQSNGCTLTVYKSKPNKKVLLLSTKHKNIKIDKAAKKIPETVLFYNKTKFGVDVTDQMARKYTVKSGCRRWPLQVFFNILDLAGINSWILYKNTTGENISRKDFLFRLAEELA 850 HSP 2 Score: 98.2117 bits (243), Expect = 3.085e-52 Identity = 63/138 (45.65%), Postives = 81/138 (58.70%), Query Frame = -3 Query: 3163 DNINEIEDSNDSGNENYHKRKRTRXXXXXXXXXXXXXXENKENS-IEHCVDGTVWKPLKEGKGCHRMPAYSVFKDVSGLTAYVKRNIMLENVRSAFDLIIDNHKIAHIKICTEIEARK---DN*SITKAQLRVFLAIF 3564 DNIN+ S+DS EN KRTR E D N N E DGT+W ++EG R+P +S FKDV G TA+ KRNIM N+ SAF L+IDNH + HI+ICTE+EA + +IT+ +L+ FLAI Sbjct: 391 DNINQ---SSDSDCENM-PNKRTRRCMRFPSSSEDEDGSNVPNQQTEIAADGTIWTRIEEGGVVGRLPIHSAFKDVHGPTAHAKRNIMKGNLSSAFLLLIDNHILEHIRICTELEASRVLGKTWTITQEKLKAFLAIL 524 HSP 3 Score: 48.1358 bits (113), Expect = 3.085e-52 Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = -2 Query: 2987 VTSFSSDFYARGVXXXXXXXXXXXLSNKWRSSFFSKTITVDKFMEMFRFIRIGNKEERSQRLKTD*F 3187 + +F + YARG Y+ L+ YL + KW SFFS T++ F ++ R+IR + +RSQRL+TD F Sbjct: 517 LKAFLAILYARGAYEGNTLRLQYLWNKKWGPSFFSSTMSRRDFTDILRYIRFDKRNQRSQRLQTDKF 583 HSP 4 Score: 73.1738 bits (178), Expect = 1.406e-8 Identity = 44/87 (50.57%), Postives = 52/87 (59.77%), Query Frame = -2 Query: 2213 KKPKRDPDTVAIYNKTKCEVDIIYHMAKKYTVKEGSADSPFTCFITFYIWKPSILRYWT---ETTGLNISRKNFLFELAEELPSDYQ 2464 K K+ P+TV YNKTK VD+ MA+KYTVK G P F F I + + W TTG NISRK+FLF LAEEL S+YQ Sbjct: 770 KAAKKIPETVLFYNKTKFGVDVTDQMARKYTVKSGCRRWPLQVF--FNILDLAGINSWILYKNTTGENISRKDFLFRLAEELASEYQ 854
BLAST of SMED30020656 vs. TrEMBL
Match: A0A1A9US35 (DDE_Tnp_1_7 domain-containing protein OS=Glossina austeni OX=7395 PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.028e-40 Identity = 104/257 (40.47%), Postives = 141/257 (54.86%), Query Frame = -1 Query: 2283 WGKFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYMP---KNLE*SFCWYRTL*ANI**VA*RI*GKTKN-DHKIYMGEFVVLKLAEPYSCRGRNTTTDNLFTSISLAKKLLEIKTTXXXXXXXXXXXLPKLQR---DNMIQYSTKLYK*DEYVLTIYXXXXXXXXXXXXXXXKYENKKTQT*P*HSCNLQQNKV*G*YYLPHG*KIYRERGF------------------RR*PLHMFYNILHLEAINS*ILDRD 2978 W KFIEN++ CYKPGA L IDEQLFP+KAR R +QYMP F + + GK + + I +GEFV KLA+PY+ GRN T DN FTS S+A KLL +TTLV +R N+R LPKL R D+M+++ST LYK ++++LTIYK+K KK+L+LSS H S ++ N + +P + Y F +R PL +F+NIL L IN+ IL ++ Sbjct: 208 WYKFIENSQNCYKPGAYLAIDEQLFPTKARCRLSQYMPNKPDKFSIKFWLASDVSSKYIVNGFPYLGKDEGRESSIPLGEFVTSKLAQPYTGHGRNITVDNFFTSASVASKLLAKRTTLVGTIRRNKRELPKLARQAKDSMVRFSTILYKSEDFILTIYKAKPNKKVLILSSMHS------------SVQIETNDI----RIPETIRFYNSTKFIVDVTDQIARKYSVKSKCQRWPLQVFFNILDLAGINAWILHKE 448 HSP 2 Score: 70.8626 bits (172), Expect = 1.028e-40 Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = -3 Query: 3220 ENSIEHCVDGTVWKPLKEGKGCHRMPAYSVFKDVSGLTAYVKRNIMLENVRSAFDLIIDNHKIA---HIKICTEIEA 3441 E IE +DGTVWK +KEG + Y++FK+V G T Y KRNI+ V+SAF LIID HKI H++ TE EA Sbjct: 73 EKEIETVMDGTVWKKIKEGSNSGKTLIYNIFKEVLGPTGYAKRNIIKSRVKSAFSLIID-HKIMYNEHVREFTESEA 148 HSP 3 Score: 27.7202 bits (60), Expect = 1.028e-40 Identity = 20/49 (40.82%), Postives = 29/49 (59.18%), Query Frame = -2 Query: 3035 SFSSDFYARGVXXXXXXXXXXXLSNKWRSSFFSKTITVDKFMEMFRFIR 3181 +F YARG Y+AK + YL + KW SFFS T++ + F ++FI Sbjct: 165 AFIGLLYARGAYEAKNINLSYLWNTKWGPSFFSTTMSRNDFEVWYKFIE 213
BLAST of SMED30020656 vs. TrEMBL
Match: A0A2R7VV36 (DDE_Tnp_1_7 domain-containing protein OS=Oncopeltus fasciatus OX=7536 GN=OFAS_OFAS002403 PE=4 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 5.587e-32 Identity = 78/163 (47.85%), Postives = 101/163 (61.96%), Query Frame = -1 Query: 2523 LISAKWGKFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYMPKN---LE*SFCWYRTL*ANI**VA*RI*GKTKNDHKIYMGEFVVLKLAEPYSCRGRNTTTDNLFTSISLAKKLLEIKTTXXXXXXXXXXXLP---KLQRDNMIQYSTKLYK*DEYVLTIY 2993 +IS W +FI N++ CYKP N++IDEQLFP+KAR +FTQYMPK L F + + GK + + EFVVLKLAEPY +GRN TTDN FTSI LA+KL T+LV +RAN+R LP K+++D M YS+ YK + +LTIY Sbjct: 1 MISEIWNQFIHNSQCCYKPHENISIDEQLFPTKARCKFTQYMPKKPQKLGIKFWLAVDVQSKYVINGFPYLGKDEMRTSTPLAEFVVLKLAEPYLHQGRNITTDNFFTSIPLAEKLAAKSTSLVGTIRANKRELPKPAKIKKDKMKMYSSLHYKSGKSILTIY 163 HSP 2 Score: 58.151 bits (139), Expect = 5.587e-32 Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = -2 Query: 2156 KRDPDTVAIYNKTKCEVDIIYHMAKKYTVKEGSADSPFTCFITFYIWKPSILRYWT---ETTGLNISRKNFLFELAEELPSDYQDEQNCFN*FPC-----VRRSCKIG 2455 K P T+ YN TK VD++ MA+KYT K +A +T + F I + + W E TG +SRK+FLF+LA+EL + E P R++C+IG Sbjct: 188 KHTPQTITYYNDTKFGVDVVDQMARKYTTK--AASFRWTLQVFFNILDLAAINAWILYKECTGSKLSRKDFLFQLAKELADKEKKEHKLDYNQPSPSTSQERKTCQIG 293
BLAST of SMED30020656 vs. TrEMBL
Match: A0A3B3SZ47 (DDE_Tnp_1_7 domain-containing protein OS=Paramormyrops kingsleyae OX=1676925 PE=4 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.578e-30 Identity = 86/254 (33.86%), Postives = 128/254 (50.39%), Query Frame = -1 Query: 2292 LISAKWGKFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYM---PKNLE*SFCWYRTL*ANI**VA*RI*GKTKNDHKIY------------MGEFVVLKLAEPYSCRGRNTTTDNLFTSISLAKKLLEIKTTXXXXXXXXXXXLPKLQRDNMIQYSTKLYK*DEYVLTIYXXXXXX----XXXXXXXXXKYENKKTQT*P*HSCNLQQNKV*G*YYLPHG*KIYRERG-FRR*PLHMFYNILHLEAINS*IL 2993 L+S W +F++N+ CYKPG ++T+DEQLFP+K R F QY+ P F W +A + K + Y +G+ VVLK+ EPY +GRN TTD+ FTS+ LAK L KT+LV + +RR LP + ++T+ K + LT+Y+ KA+K + +S +K++ P + KV G L + Y + RR P+ +FYN+L L AIN+ IL Sbjct: 258 LVSEIWERFVQNSIACYKPGVDITVDEQLFPTKTRCSFIQYIASKPDKFGIKF-W----------LAADVGTKYMLNGAPYLGKDETRRPGQRLGDSVVLKMVEPYLGKGRNITTDSFFTSLKLAKALQAKKTSLVGTINKSRRELPPCVKVQRSLFTTQALKSENATLTVYQCKARKNVCILSTVHTSVSITSGQKSK--PETVTYYNRTKV-GVDVLDQMVRKYSVKAPTRRWPVTVFYNMLDLAAINASIL 497 HSP 2 Score: 56.6102 bits (135), Expect = 1.578e-30 Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = -3 Query: 3166 EHCVDGTVWKPLKEGKGCHRMPAYSVFKDVSGLTAYVKRNIMLENVRSAFDLIIDNHKIAHIKICTEIEARKDN----*SITKAQLRVFLAI 3429 E DGTVW ++ G+ R + +V +VSG TA+ KRNI E+ SAF +ID+ + HI+ CT EA + N IT +L+ F+A+ Sbjct: 107 ETAKDGTVWTIIETGENSGRRQSQNVMTEVSGPTAHAKRNI--EDALSAFLCLIDDVMLKHIRDCTVAEAHRVNEDSSWDITVDELKAFIAL 196 HSP 3 Score: 40.4318 bits (93), Expect = 1.578e-30 Identity = 20/65 (30.77%), Postives = 36/65 (55.38%), Query Frame = -2 Query: 2987 SFSSDFYARGVXXXXXXXXXXXLSNKWRSSFFSKTITVDKFMEMFRFIRIGNKEERSQRLKTD*F 3181 +F + Y RG K + + S+ W +FF +T++ ++F E+ RF+R KE R R++ + F Sbjct: 192 AFIALVYVRGAQGGKGMDLVSFWSDDWGCAFFKETMSRNRFQEIMRFLRFDKKETRRTRIQDNKF 256
BLAST of SMED30020656 vs. TrEMBL
Match: A0A2R7WB04 (DDE_Tnp_1_7 domain-containing protein OS=Oncopeltus fasciatus OX=7536 GN=OFAS_OFAS006958 PE=4 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.153e-30 Identity = 78/212 (36.79%), Postives = 108/212 (50.94%), Query Frame = -3 Query: 3070 ELLKRMTNVNED*PGSDSDINELFES-EEFDNINEIED-----SNDSGNENYH----KRKRTRXXXXXXXXXXXXXXENKENSIEHC-----VDGTVWKPLKEGKGCHRMPAYSVFKDVSGLTAYVKRNIMLENVRSAFDLIIDNHKIAHIKICTEIEA---RKDN*SITKAQLRVFLAIFMLEVCIKQRP*KRYIYCQINGDPVFFRKQ*P 3651 ++LK M +V+E+ GS+ D NE+ ++ +E N+ E S+DS EN +RKR RI+SD+E E+E T +NS C VDGT+W LK G R P + +FKD++G T Y KRN+M NV SAF LII + I HIK CTE EA K + +I +L F+ I + + P FF P Sbjct: 7 KILKNMVSVSEEFSGSEEDENEMIQNKDEIQNLESDESMQAGKSSDSEKENQQNLGLRRKRMRILSDSESENETTIPILSQNSDAFCETEIAVDGTIWTKLKMGGSSGRSPVHKIFKDIAGPTGYAKRNVMEGNVSSAFHLIITKNMIEHIKFCTEEEACRVLKTDWNILTTKLLSFIGILYARGAYEANSLNAFYLWSKEWGPAFFSNTMP 218 HSP 2 Score: 68.1662 bits (165), Expect = 2.153e-30 Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = -1 Query: 2862 LISAKWGKFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYMPK 2993 +IS W ++I N++ CYKP N++IDEQLFP+KAR +FTQYMPK Sbjct: 248 MISEIWNQYIHNSQCCYKPHENISIDEQLFPTKARCKFTQYMPK 291
BLAST of SMED30020656 vs. Ensembl Cavefish
Match: ENSAMXT00000039501.1 (pep primary_assembly:Astyanax_mexicanus-2.0:19:21564630:21575712:1 gene:ENSAMXG00000031759.1 transcript:ENSAMXT00000039501.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 78.1814 bits (191), Expect = 4.347e-17 Identity = 78/240 (32.50%), Postives = 125/240 (52.08%), Query Frame = -1 Query: 2292 LISAKWGKFIENNKVCYKPGANLTIDEQLFPSKARSRFTQYMPKNLE*SFCWYRTL*ANI**VA*RI*GKTKNDHKIY---MGEFVVLKLAEPYSCRGRNTTTDNLFTSISLAKKLLEIKTTXXXXXXXXXXXLPKLQRDNMIQYSTKLYK*DEYVLTIYXXXXXXX--XXXXXXXXKYENKKTQT*P*HSCNLQQNKV*G*YYLPHG*KIYR-ERGFRR*PLHMFYNILHLEAINS*IL 2993 +IS + KF++N+ Y PG N+T+ EQLFP+KAR RF QY+ + ++ A+ V K++ K+ + + VV +L EP+ +GRN TT F S++LA LL KTT+V +R +++ P+ + ++TK+ + LTIY++K K+ +L + + Q P +S + N L +Y + G RR P+ +FYNIL L AIN+ IL Sbjct: 673 MISELFYKFVQNSIASYVPGENITVGEQLFPTKARCRFAQYVLNKDKFGLKFWVAADADTKYVLNIFPYLGKDEGKLSGQRVKDSVVTRLVEPFLDKGRNITTSGFFPSLALASHLLVNKTTVVGTIRKSKQETPQCTQTQSEIFNTKVLRTGNTTLTIYQAKPKENVCVLSTMHQTVSVDNSEQKLP-NSISHYYNTKFTVDVLDRMAHLYTVKNGTRRWPVAVFYNILDLAAINAHIL 911 HSP 2 Score: 32.3426 bits (72), Expect = 4.347e-17 Identity = 20/65 (30.77%), Postives = 34/65 (52.31%), Query Frame = -2 Query: 2987 SFSSDFYARGVXXXXXXXXXXXLSNKWRSSFFSKTITVDKFMEMFRFIRIGNKEERSQRLKTD*F 3181 +F + Y RG+ K +K S+ + F KT+T +F ++ R +R +K R+ R +TD F Sbjct: 607 AFVALTYMRGITGGKTMKLDDYWSSDLGNPIFLKTLTRQRFRDIMRHLRFDDKNTRAARHETDKF 671
BLAST of SMED30020656 vs. Planmine SMEST
Match: SMESG000006821.1 (SMESG000006821.1) HSP 1 Score: 114.005 bits (284), Expect = 7.324e-28 Identity = 66/112 (58.93%), Postives = 77/112 (68.75%), Query Frame = 1 Query: 9286 LKNYHN--NYENIAAYENLHSGTIYSIIDTFKKTGRTAAIPRGGLRHSKVNEE----VKDIVKKSCRQRL---*SRVLDILGINISNPTILKGLKDFHYS*KLFKEIPQRRN 9594 ++ Y+N + +IAAY NL S IYSIIDT KKTGRTAAI RGG RHSKVNEE V+++V C L + VLD LGINISNPTI +KD HYS KL K+IPQR N Sbjct: 92 IQAYNNGQSVSSIAAYGNLQSSNIYSIIDTLKKTGRTAAISRGGSRHSKVNEEVNEFVRNLVDNDCTLSLRCVGAAVLDSLGINISNPTIHNYVKDLHYSLKLIKQIPQRNN 203
BLAST of SMED30020656 vs. Planmine SMEST
Match: SMESG000046694.1 (SMESG000046694.1) HSP 1 Score: 103.99 bits (258), Expect = 3.709e-23 Identity = 78/136 (57.35%), Postives = 92/136 (67.65%), Query Frame = -3 Query: 3259 SSKDMELLKRMTNVNED*PGSDSDINELFESEEFDNINEIEDSNDSGNENYHKRKRTRXXXXXXXXXXXXXXENKENSIEHCVDGTVWKPLKEGKGCHRMPAYSVFKDVSGLTAYVKRNIMLENVRSAFDLIIDNH 3666 S K MELLKR+TNVN+D GSDSDINEL +E + N Y KRK+ IIS+TE EHEIT+ E++ENSIE +GT+ KPLK+ C R+PAYSV KDV G KRNIM NVRSAFDLIID+H Sbjct: 202 SLKVMELLKRITNVNQDQSGSDSDINELCGNENYRN-------------TYLKRKKMCIISETESEHEITEAEDEENSIERYGNGTLSKPLKKDGDCGRIPAYSVLKDVFG----PKRNIMHANVRSAFDLIIDDH 320
BLAST of SMED30020656 vs. Planmine SMEST
Match: SMESG000046694.1 (SMESG000046694.1) HSP 1 Score: 103.219 bits (256), Expect = 1.250e-22 Identity = 79/141 (56.03%), Postives = 94/141 (66.67%), Query Frame = -3 Query: 3259 SIID*SSKDMELLKRMTNVNED*PGSDSDINELFESEEFDNINEIEDSNDSGNENYHKRKRTRXXXXXXXXXXXXXXENKENSIEHCVDGTVWKPLKEGKGCHRMPAYSVFKDVSGLTAYVKRNIMLENVRSAFDLIIDNH 3681 I+ S K MELLKR+TNVN+D GSDSDINEL +E + N Y KRK+ IIS+TE EHEIT+ E++ENSIE +GT+ KPLK+ C R+PAYSV KDV G KRNIM NVRSAFDLIID+H Sbjct: 197 GIMGKSLKVMELLKRITNVNQDQSGSDSDINELCGNENYRN-------------TYLKRKKMCIISETESEHEITEAEDEENSIERYGNGTLSKPLKKDGDCGRIPAYSVLKDVFG----PKRNIMHANVRSAFDLIIDDH 320
BLAST of SMED30020656 vs. Planmine SMEST
Match: SMESG000035129.1 (SMESG000035129.1) HSP 1 Score: 75.8702 bits (185), Expect = 1.120e-13 Identity = 51/114 (44.74%), Postives = 62/114 (54.39%), Query Frame = -2 Query: 2156 KKPKRDPDTVAIYNKTKCEVDIIYHMAKKYTVKEGSADSPFTCFITFYIWKPSILRYWT---ETTGLNISRKNFLFELAEELPSDYQ------DEQN--CFN*FPCVRRSCKIG 2464 K K+ P+TV+ YN TK VD+ MA KYTVK GS P F F I + + W TTG NI RK+FLF+LAEEL S+YQ E N N VR+ C+IG Sbjct: 196 KAAKKLPETVSFYNNTKFGVDVTDQMALKYTVKSGSRRWPLQVF--FNILDLAAINSWVLYKNTTGENILRKDFLFQLAEELASEYQTSRKKPHETNIPTINATVLVRKWCQIG 307
BLAST of SMED30020656 vs. Planmine SMEST
Match: SMESG000031831.1 (SMESG000031831.1) HSP 1 Score: 77.0258 bits (188), Expect = 1.477e-13 Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = -2 Query: 2159 PDTVAIYNKTKCEVDIIYHMAKKYTVKEGSADSPFTCFITFYIWKPSILRYWT---ETTGLNISRKNFLFELAEELPSDYQDEQNCFN*FPCV------RRSCKI 2446 P+TVA YNKTKC V ++ MA+KY+VK GS P F + I + W E TG+NISRKNF+F+LAEEL +D +D + P R+SC+I Sbjct: 165 PETVAFYNKTKCGVYVLDQMARKYSVKTGSRRWPLKVF--YNILDLEAINAWILYKEVTGVNISRKNFIFQLAEELANDNKDAPSTSFKLPSYILNIRNRKSCQI 267 The following BLAST results are available for this feature:
BLAST of SMED30020656 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30020656 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30020656 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30020656 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30020656 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of SMED30020656 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30020656 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30020656 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30020656 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED30020656 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30020656 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30020656 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30020656 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30020656 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30020656 ID=SMED30020656|Name=SMED30020656|organism=Schmidtea mediterranea sexual|type=transcript|length=9812bpback to top protein sequence of SMED30020656-orf-1 >SMED30020656-orf-1 ID=SMED30020656-orf-1|Name=SMED30020656-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=119bp MNMYSQFTNQKQRKRYYCSVLNINMKTKKPKRDPDTVAIYNKTKCEVDIIback to top Annotated Terms
The following terms have been associated with this transcript:
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