RRM domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30020626 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 23Note: Hover over icons to view figure legend
Homology
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: BOLL (boule homolog, RNA binding protein [Source:HGNC Symbol;Acc:HGNC:14273]) HSP 1 Score: 132.494 bits (332), Expect = 1.131e-33 Identity = 83/174 (47.70%), Postives = 108/174 (62.07%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL-FPRQEI---SGTVLYNGPV--PYALQNGLTLFQVPGQDYSV---LASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIP 745 P+ GT+IPNRIFVGGI T E +L+ FFS YG +K+VKI+NDR G+SKG YGFVTFE QE A+KI++ EAE L +K++KLNIG A+RKQ + PR I +GT+ PY NG+ F P + SV S+S + +M+ QP QP Y YQ T +P Sbjct: 25 PRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKG-YGFVTFETQEDAQKILQ-EAEKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTP-EVTSVPPPWPSRSVCSSPVMVAQPIYQ----QPAYHYQATTQYLP 191
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: BOLL (boule homolog, RNA binding protein [Source:HGNC Symbol;Acc:HGNC:14273]) HSP 1 Score: 132.494 bits (332), Expect = 1.131e-33 Identity = 83/174 (47.70%), Postives = 108/174 (62.07%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL-FPRQEI---SGTVLYNGPV--PYALQNGLTLFQVPGQDYSV---LASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIP 745 P+ GT+IPNRIFVGGI T E +L+ FFS YG +K+VKI+NDR G+SKG YGFVTFE QE A+KI++ EAE L +K++KLNIG A+RKQ + PR I +GT+ PY NG+ F P + SV S+S + +M+ QP QP Y YQ T +P Sbjct: 25 PRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKG-YGFVTFETQEDAQKILQ-EAEKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTP-EVTSVPPPWPSRSVCSSPVMVAQPIYQ----QPAYHYQATTQYLP 191
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: BOLL (boule homolog, RNA binding protein [Source:HGNC Symbol;Acc:HGNC:14273]) HSP 1 Score: 132.494 bits (332), Expect = 1.277e-33 Identity = 83/174 (47.70%), Postives = 108/174 (62.07%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL-FPRQEI---SGTVLYNGPV--PYALQNGLTLFQVPGQDYSV---LASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIP 745 P+ GT+IPNRIFVGGI T E +L+ FFS YG +K+VKI+NDR G+SKG YGFVTFE QE A+KI++ EAE L +K++KLNIG A+RKQ + PR I +GT+ PY NG+ F P + SV S+S + +M+ QP QP Y YQ T +P Sbjct: 37 PRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKG-YGFVTFETQEDAQKILQ-EAEKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTP-EVTSVPPPWPSRSVCSSPVMVAQPIYQ----QPAYHYQATTQYLP 203
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: BOLL (boule homolog, RNA binding protein [Source:HGNC Symbol;Acc:HGNC:14273]) HSP 1 Score: 130.183 bits (326), Expect = 2.186e-32 Identity = 81/167 (48.50%), Postives = 105/167 (62.87%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL-FPRQEI---SGTVLYNGPV--PYALQNGLTLFQVPGQDYSV---LASQSPQYATMMLPQPTTAMYLPQPQYAYQ 724 P+ GT+IPNRIFVGGI T E +L+ FFS YG +K+VKI+NDR G+SKG YGFVTFE QE A+KI++ EAE L +K++KLNIG A+RKQ + PR I +GT+ PY NG+ F P + SV S+S + +M+ QP QP Y YQ Sbjct: 25 PRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKG-YGFVTFETQEDAQKILQ-EAEKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTP-EVTSVPPPWPSRSVCSSPVMVAQPIYQ----QPAYHYQ 184
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: DAZL (deleted in azoospermia like [Source:HGNC Symbol;Acc:HGNC:2685]) HSP 1 Score: 92.8189 bits (229), Expect = 7.054e-21 Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGLT 601 G ++PN +FVGGI E E++ FF+ YG +K+VKII DRTG+SKG YGFV+F N +KI++++ F +KL +G A+RKQ+L +++N P P QN T Sbjct: 73 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKG-YGFVSFFNDVDVQKIVESQIN---FHGKKLKLGPAIRKQNLCAYHVQPRPLVFNHPPPPQFQNVWT 182
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: daz-1 (DAZ protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q20870]) HSP 1 Score: 93.2041 bits (230), Expect = 1.313e-19 Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRK 517 P LIPNRIFVGG ++TTE EL+ F + +KDVK++ G SKG YGF+TFE ++ AE+I K + L F+ RKLN+G A+RK Sbjct: 58 PPTYELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKG-YGFITFETEDQAEEIRKLTPKQLEFRSRKLNLGPAIRK 145
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: sup-12 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:O45189]) HSP 1 Score: 55.8398 bits (133), Expect = 2.904e-8 Identity = 33/112 (29.46%), Postives = 57/112 (50.89%), Query Frame = 2 Query: 278 RIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGL-TLFQ 610 +IFVGG+ +T+++ L +F +G I++ +I DR YGFVT +++ +AE+ K+ + ++ +N+ + K PR + L G V L L LFQ Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLAYLGAK----PRTNVQLAALAAGQVQLPLTTQLQALFQ 143
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: sup-12 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:O45189]) HSP 1 Score: 53.5286 bits (127), Expect = 3.407e-8 Identity = 33/112 (29.46%), Postives = 57/112 (50.89%), Query Frame = 2 Query: 278 RIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGL-TLFQ 610 +IFVGG+ +T+++ L +F +G I++ +I DR YGFVT +++ +AE+ K+ + ++ +N+ + K PR + L G V L L LFQ Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLAYLGAK----PRTNVQLAALAAGQVQLPLTTQLQALFQ 143
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: msi-1 (MuSashI (Fly neural) family; Neural RNA-binding protein MSI-1 [Source:UniProtKB/TrEMBL;Acc:G5EFS2]) HSP 1 Score: 55.4546 bits (132), Expect = 6.244e-8 Identity = 19/59 (32.20%), Postives = 41/59 (69.49%), Query Frame = 2 Query: 278 RIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIK 454 ++F+GG+++ +T E++K +F +YG ++D ++ D+ +GFVTF++ E A+K+ + Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCE 193 HSP 2 Score: 50.447 bits (119), Expect = 2.698e-6 Identity = 20/75 (26.67%), Postives = 41/75 (54.67%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKE 484 G+ P ++F+GG++ TT E L+ +F +G + + ++ D +GF+TF + + +K++ N L K+ Sbjct: 40 GSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKK 114
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Match: H28G03.1 (pep chromosome:WBcel235:X:5216363:5218418:1 gene:WBGene00019249.1 transcript:H28G03.1c.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H28G03.1) HSP 1 Score: 54.6842 bits (130), Expect = 1.389e-7 Identity = 33/114 (28.95%), Postives = 56/114 (49.12%), Query Frame = 2 Query: 278 RIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTV----LYNGPVPYA--LQNGLT 601 ++F+GG++ +TT+E+L +FS +GP+ D +I D +GFVTF + +AE + + L G V + PR+++S + P P L NG+T Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKL--------GGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCKLLLNGIT 175
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: bol (gene:FBgn0011206 transcript:FBtr0076538) HSP 1 Score: 108.612 bits (270), Expect = 2.130e-26 Identity = 73/174 (41.95%), Postives = 103/174 (59.20%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIPS--PNNGQQ 766 PK GTLIPNRIFVGGI+ +TTE +L FS+YG +K KII DR G+SKG YGFVTFE ++ A++ ++ + E ++ ++RKLNI A++KQ P Q I T NG V Y + +P ++ A+ P A + P +AM QP Y Y + +P+ P N Q+ Sbjct: 25 PKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKG-YGFVTFETEQEAQR-LQADGECVVLRDRKLNIAPAIKKQP-NPLQSIVAT---NGAVYYTTTPPAPISNIPMDQFA--AAVYPPAAGVPAIYPPSAMQY-QPFYQYYSVPMNVPTIWPQNYQE 189
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: bol (gene:FBgn0011206 transcript:FBtr0344979) HSP 1 Score: 108.612 bits (270), Expect = 2.130e-26 Identity = 73/174 (41.95%), Postives = 103/174 (59.20%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIPS--PNNGQQ 766 PK GTLIPNRIFVGGI+ +TTE +L FS+YG +K KII DR G+SKG YGFVTFE ++ A++ ++ + E ++ ++RKLNI A++KQ P Q I T NG V Y + +P ++ A+ P A + P +AM QP Y Y + +P+ P N Q+ Sbjct: 25 PKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKG-YGFVTFETEQEAQR-LQADGECVVLRDRKLNIAPAIKKQP-NPLQSIVAT---NGAVYYTTTPPAPISNIPMDQFA--AAVYPPAAGVPAIYPPSAMQY-QPFYQYYSVPMNVPTIWPQNYQE 189
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: bol (gene:FBgn0011206 transcript:FBtr0076540) HSP 1 Score: 108.612 bits (270), Expect = 2.130e-26 Identity = 73/174 (41.95%), Postives = 103/174 (59.20%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIPS--PNNGQQ 766 PK GTLIPNRIFVGGI+ +TTE +L FS+YG +K KII DR G+SKG YGFVTFE ++ A++ ++ + E ++ ++RKLNI A++KQ P Q I T NG V Y + +P ++ A+ P A + P +AM QP Y Y + +P+ P N Q+ Sbjct: 25 PKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKG-YGFVTFETEQEAQR-LQADGECVVLRDRKLNIAPAIKKQP-NPLQSIVAT---NGAVYYTTTPPAPISNIPMDQFA--AAVYPPAAGVPAIYPPSAMQY-QPFYQYYSVPMNVPTIWPQNYQE 189
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: bol (gene:FBgn0011206 transcript:FBtr0076539) HSP 1 Score: 107.457 bits (267), Expect = 2.477e-26 Identity = 73/173 (42.20%), Postives = 102/173 (58.96%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIPS--PNNGQ 763 PK GTLIPNRIFVGGI+ +TTE +L FS+YG +K KII DR G+SKG YGFVTFE ++ A++ ++ + E ++ ++RKLNI A++KQ P Q I T NG V Y + +P ++ A+ P A + P +AM QP Y Y + +P+ P N Q Sbjct: 25 PKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKG-YGFVTFETEQEAQR-LQADGECVVLRDRKLNIAPAIKKQP-NPLQSIVAT---NGAVYYTTTPPAPISNIPMDQFA--AAVYPPAAGVPAIYPPSAMQY-QPFYQYYSVPMNVPTIWPQNYQ 188
BLAST of RRM domain-containing protein vs. Ensembl Fly
Match: bol (gene:FBgn0011206 transcript:FBtr0076541) HSP 1 Score: 107.457 bits (267), Expect = 2.477e-26 Identity = 73/173 (42.20%), Postives = 102/173 (58.96%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIPS--PNNGQ 763 PK GTLIPNRIFVGGI+ +TTE +L FS+YG +K KII DR G+SKG YGFVTFE ++ A++ ++ + E ++ ++RKLNI A++KQ P Q I T NG V Y + +P ++ A+ P A + P +AM QP Y Y + +P+ P N Q Sbjct: 25 PKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKG-YGFVTFETEQEAQR-LQADGECVVLRDRKLNIAPAIKKQP-NPLQSIVAT---NGAVYYTTTPPAPISNIPMDQFA--AAVYPPAAGVPAIYPPSAMQY-QPFYQYYSVPMNVPTIWPQNYQ 188
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: dazl (deleted in azoospermia-like [Source:NCBI gene;Acc:58039]) HSP 1 Score: 72.7886 bits (177), Expect = 3.635e-14 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQH 523 G + PN +FVGGI E E++ FF+ YG +K+VKII R G+ KG YGFV F + I+ + + FK +KL +G A+ K+ Sbjct: 25 GKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKG-YGFVYFSEDVDIQTIVD---QPISFKGKKLKLGPAIMKER 108
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: dazl (deleted in azoospermia-like [Source:NCBI gene;Acc:58039]) HSP 1 Score: 72.7886 bits (177), Expect = 3.880e-14 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQH 523 G + PN +FVGGI E E++ FF+ YG +K+VKII R G+ KG YGFV F + I+ + + FK +KL +G A+ K+ Sbjct: 25 GKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKG-YGFVYFSEDVDIQTIV----DPISFKGKKLKLGPAIMKER 107
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: dazl (deleted in azoospermia-like [Source:NCBI gene;Acc:58039]) HSP 1 Score: 72.7886 bits (177), Expect = 4.643e-14 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQH 523 G + PN +FVGGI E E++ FF+ YG +K+VKII R G+ KG YGFV F + I+ + + FK +KL +G A+ K+ Sbjct: 25 GKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKG-YGFVYFSEDVDIQTIVD---QPISFKGKKLKLGPAIMKER 108
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: dazl (deleted in azoospermia-like [Source:NCBI gene;Acc:58039]) HSP 1 Score: 73.1738 bits (178), Expect = 5.213e-14 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQH 523 G + PN +FVGGI E E++ FF+ YG +K+VKII R G+ KG YGFV F + I+ + + FK +KL +G A+ K+ Sbjct: 42 GKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKG-YGFVYFSEDVDIQTIVD---QPISFKGKKLKLGPAIMKER 125
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: dazl (deleted in azoospermia-like [Source:NCBI gene;Acc:58039]) HSP 1 Score: 73.1738 bits (178), Expect = 5.213e-14 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQH 523 G + PN +FVGGI E E++ FF+ YG +K+VKII R G+ KG YGFV F + I+ + + FK +KL +G A+ K+ Sbjct: 42 GKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKG-YGFVYFSEDVDIQTIVD---QPISFKGKKLKLGPAIMKER 125
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: dazl (deleted in azoospermia-like [Source:NCBI gene;Acc:394676]) HSP 1 Score: 81.2629 bits (199), Expect = 2.934e-16 Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRK 517 G +IPN +FVGGI E + F YG +KD+KII DRTG+SKG YGFV+F ++ +KI+K++ + F +KL +G A+RK Sbjct: 25 GKVIPNTVFVGGIDITMDEMAIGNLFEKYGKVKDLKIITDRTGVSKG-YGFVSFYDEVDVQKIVKSQ---INFHGKKLKLGPAIRK 106
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: deup1 (deuterosome assembly protein 1 [Source:Xenbase;Acc:XB-GENE-5961526]) HSP 1 Score: 61.2326 bits (147), Expect = 3.255e-9 Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 2 Query: 266 LIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETL 472 L +IFVGGI +T E L+ +F SYG I+ ++++ DR K + FVTF++ +T +KI+ + T+ Sbjct: 115 LTVKKIFVGGIKEDTEEYHLRDYFQSYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI 183
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: msi1 (musashi RNA binding protein 1 [Source:NCBI gene;Acc:496961]) HSP 1 Score: 59.3066 bits (142), Expect = 1.058e-8 Identity = 43/165 (26.06%), Postives = 73/165 (44.24%), Query Frame = 2 Query: 275 NRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPY---ALQNGLTLFQVPGQDYSVLASQS-----PQYATMMLPQPTTAMYLPQPQYAYQTPTAVIP 745 +IFVGG++ NTT E++K +F +G + D ++ D+T +GFVTFE ++ EK+ + + + A K+ + P + G + +PY A G+ + PG + AS+S P Y T P A+ + + IP Sbjct: 88 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEGEDIVEKVCDIHFHEI--NNKMVECKKAQPKEVMSPTGSVRGR---SRVMPYGMDAFMLGIGMLGYPGFQAATYASRSYTGIAPGY-TYQFPGKFVALMSICSMFCMHCESCTIP 246
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: psd3 (pleckstrin and Sec7 domain containing 3 [Source:Xenbase;Acc:XB-GENE-6467528]) HSP 1 Score: 58.9214 bits (141), Expect = 1.186e-8 Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 2 Query: 266 LIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIK 454 L +IFVGGI +T E L+ +F YG I+ ++I+ DR K + FVTFE+ ++ +KI++ Sbjct: 102 LTVKKIFVGGIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVR 164
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: msi1 (musashi RNA binding protein 1 [Source:NCBI gene;Acc:496961]) HSP 1 Score: 58.5362 bits (140), Expect = 1.663e-8 Identity = 35/128 (27.34%), Postives = 62/128 (48.44%), Query Frame = 2 Query: 275 NRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQN---GLTLFQVPGQDYSVLASQS 649 +IFVGG++ NTT E++K +F +G + D ++ D+T +GFVTFE ++ EK+ + + + A K+ + P + G +PY + G+ + PG + AS+S Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEGEDIVEKVCDIHFHEI--NNKMVECKKAQPKEVMSPTGSVRGRSRV---MPYGMDAFMLGIGMLGYPGFQAATYASRS 231 HSP 2 Score: 51.9878 bits (123), Expect = 2.232e-6 Identity = 24/83 (28.92%), Postives = 43/83 (51.81%), Query Frame = 2 Query: 272 PNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQ 520 P ++F+GG++ TT+E L+ +FS +G +K+ ++ D +GFVTF +Q +K++ L K + R Q Sbjct: 19 PCKMFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQ 101
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Boll (boule homolog, RNA binding protein [Source:MGI Symbol;Acc:MGI:1922638]) HSP 1 Score: 130.568 bits (327), Expect = 2.942e-33 Identity = 79/173 (45.66%), Postives = 105/173 (60.69%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL-FPRQEI---SGTVLYNGPV--PYALQNGLTLFQVPG--QDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIP 745 P+ GT+IPNRIFVGGI T E +L+ FFS YG +K+VKI+NDR G+SKG YGF+TFE QE A+KI++ EAE L +K++KLNIG A+RKQ + PR + +GT+ PY NG+ F P S+S + +M+ QP QP Y YQ P +P Sbjct: 24 PRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKG-YGFITFETQEDAQKILQ-EAEKLNYKDKKLNIGPAIRKQQVGIPRSSLMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPSWPSRSISSSPVMVAQPVYQ----QPAYHYQAPAQCLP 190
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Boll (boule homolog, RNA binding protein [Source:MGI Symbol;Acc:MGI:1922638]) HSP 1 Score: 130.954 bits (328), Expect = 2.942e-33 Identity = 79/173 (45.66%), Postives = 105/173 (60.69%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL-FPRQEI---SGTVLYNGPV--PYALQNGLTLFQVPG--QDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIP 745 P+ GT+IPNRIFVGGI T E +L+ FFS YG +K+VKI+NDR G+SKG YGF+TFE QE A+KI++ EAE L +K++KLNIG A+RKQ + PR + +GT+ PY NG+ F P S+S + +M+ QP QP Y YQ P +P Sbjct: 37 PRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKG-YGFITFETQEDAQKILQ-EAEKLNYKDKKLNIGPAIRKQQVGIPRSSLMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPSWPSRSISSSPVMVAQPVYQ----QPAYHYQAPAQCLP 203
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Boll (boule homolog, RNA binding protein [Source:MGI Symbol;Acc:MGI:1922638]) HSP 1 Score: 120.168 bits (300), Expect = 2.119e-31 Identity = 59/96 (61.46%), Postives = 76/96 (79.17%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL-FPR 535 P+ GT+IPNRIFVGGI T E +L+ FFS YG +K+VKI+NDR G+SKG YGF+TFE QE A+KI++ EAE L +K++KLNIG A+RKQ + PR Sbjct: 37 PRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKG-YGFITFETQEDAQKILQ-EAEKLNYKDKKLNIGPAIRKQQVGIPR 130
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Dazl (deleted in azoospermia-like [Source:MGI Symbol;Acc:MGI:1342328]) HSP 1 Score: 90.1225 bits (222), Expect = 2.676e-19 Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL 526 G ++PN +FVGGI E E++ FF+ YG +K+VKII DRTG+SKG YGFV+F N +KI++++ + F +KL +G A+RKQ+L Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKG-YGFVSFYNDVDVQKIVESQ---INFHGKKLKLGPAIRKQNL 119
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Dazl (deleted in azoospermia-like [Source:MGI Symbol;Acc:MGI:1342328]) HSP 1 Score: 87.0409 bits (214), Expect = 1.871e-18 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 2 Query: 269 IPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL 526 +PN +FVGGI E E++ FF+ YG +K+VKII DRTG+SKG YGFV+F N +KI++++ + F +KL +G A+RKQ+L Sbjct: 1 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKG-YGFVSFYNDVDVQKIVESQ---INFHGKKLKLGPAIRKQNL 82
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8N9W6|BOLL_HUMAN (Protein boule-like OS=Homo sapiens OX=9606 GN=BOLL PE=1 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 5.433e-33 Identity = 83/174 (47.70%), Postives = 108/174 (62.07%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL-FPRQEI---SGTVLYNGPV--PYALQNGLTLFQVPGQDYSV---LASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIP 745 P+ GT+IPNRIFVGGI T E +L+ FFS YG +K+VKI+NDR G+SKG YGFVTFE QE A+KI++ EAE L +K++KLNIG A+RKQ + PR I +GT+ PY NG+ F P + SV S+S + +M+ QP QP Y YQ T +P Sbjct: 25 PRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKG-YGFVTFETQEDAQKILQ-EAEKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTP-EVTSVPPPWPSRSVCSSPVMVAQPIYQ----QPAYHYQATTQYLP 191
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8WP23|BOLL_MACFA (Protein boule-like OS=Macaca fascicularis OX=9541 GN=BOLL PE=2 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 2.411e-32 Identity = 82/174 (47.13%), Postives = 107/174 (61.49%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL-FPRQEI---SGTVLYNGPV--PYALQNGLTLFQVPGQDYSV---LASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIP 745 P+ GT+IPNRIFVGGI T E +L+ FFS YG +K+VKI+NDR G+SKG YGFVTFE QE A+KI++ EAE L +K++KLNIG A+RKQ + PR I +GT+ PY NG+ F P + SV S+S + +M+ QP QP Y YQ +P Sbjct: 25 PRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKG-YGFVTFETQEDAQKILQ-EAEKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTP-EVTSVPPPWPSRSVCSSPVMVAQPIYQ----QPAYHYQATAQYLP 191
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q924M5|BOLL_MOUSE (Protein boule-like OS=Mus musculus OX=10090 GN=Boll PE=1 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 2.412e-32 Identity = 79/173 (45.66%), Postives = 105/173 (60.69%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL-FPRQEI---SGTVLYNGPV--PYALQNGLTLFQVPG--QDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIP 745 P+ GT+IPNRIFVGGI T E +L+ FFS YG +K+VKI+NDR G+SKG YGF+TFE QE A+KI++ EAE L +K++KLNIG A+RKQ + PR + +GT+ PY NG+ F P S+S + +M+ QP QP Y YQ P +P Sbjct: 25 PRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKG-YGFITFETQEDAQKILQ-EAEKLNYKDKKLNIGPAIRKQQVGIPRSSLMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPSWPSRSISSSPVMVAQPVYQ----QPAYHYQAPAQCLP 191
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q24207|BOULE_DROME (Protein boule OS=Drosophila melanogaster OX=7227 GN=bol PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.135e-25 Identity = 73/174 (41.95%), Postives = 103/174 (59.20%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIPS--PNNGQQ 766 PK GTLIPNRIFVGGI+ +TTE +L FS+YG +K KII DR G+SKG YGFVTFE ++ A++ ++ + E ++ ++RKLNI A++KQ P Q I T NG V Y + +P ++ A+ P A + P +AM QP Y Y + +P+ P N Q+ Sbjct: 25 PKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKG-YGFVTFETEQEAQR-LQADGECVVLRDRKLNIAPAIKKQP-NPLQSIVAT---NGAVYYTTTPPAPISNIPMDQFA--AAVYPPAAGVPAIYPPSAMQY-QPFYQYYSVPMNVPTIWPQNYQE 189
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q92904|DAZL_HUMAN (Deleted in azoospermia-like OS=Homo sapiens OX=9606 GN=DAZL PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.822e-20 Identity = 62/158 (39.24%), Postives = 86/158 (54.43%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPT 733 G ++PN +FVGGI E E++ FF+ YG +K+VKII DRTG+SKG YGFV+F N +KI++++ + F +KL +G A+RKQ+L +++N P P QN T +P T M QPTT M P QY PT Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKG-YGFVSFFNDVDVQKIVESQ---INFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNHPPPPQFQNVWT---------------NPNTETYM--QPTTTMN-PITQYVQAYPT 170
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A172RVQ0 (Boule 1 RNA-binding protein OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 2.737e-66 Identity = 124/129 (96.12%), Postives = 125/129 (96.90%), Query Frame = 2 Query: 149 STDSQLTPKVDTLAQEFQVSLXXXXXXXXXXXXXPKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPR 535 STDSQLTPKVDTLAQEFQVSLAAVNQATMTAAANPKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQ + Sbjct: 12 STDSQLTPKVDTLAQEFQVSLAAVNQATMTAAANPKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQKFLEQ 140
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4S2M8S9 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001898 PE=4 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 2.515e-61 Identity = 110/177 (62.15%), Postives = 137/177 (77.40%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLY-NGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQP--TTAMYLPQPQYAYQTPTAVIPSPNNGQQVT 772 PK GTLIPNRIFVGGI SNTTE+ELK FFSS+G +KDVKII+DR G+SKGSYGFVTFE+QE AEKIIKNE+ETLIFK+RKLNIGHA+RKQ +FPR ++ + + G +PY++QNG+ +F +PGQ+Y +L + YATMMLPQP T +YLP A +P A + + QQVT Sbjct: 37 PKFGTLIPNRIFVGGIPSNTTEQELKSFFSSFGQVKDVKIISDRLGVSKGSYGFVTFESQEMAEKIIKNESETLIFKDRKLNIGHAIRKQQMFPRADLPAALFFAGGAMPYSIQNGMAVFSLPGQEYPMLTQATAPYATMMLPQPGGGTTLYLPSAASATASPYAQL----SQQQVT 209
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A419QF17 (Protein boule-like OS=Clonorchis sinensis OX=79923 GN=BOLL PE=4 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 8.505e-61 Identity = 110/177 (62.15%), Postives = 137/177 (77.40%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLY-NGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQP--TTAMYLPQPQYAYQTPTAVIPSPNNGQQVT 772 PK GTLIPNRIFVGGI SNTTE+ELK FFSS+G +KDVKII+DR G+SKGSYGFVTFE+QE AEKIIKNE+ETLIFK+RKLNIGHA+RKQ +FPR ++ + + G +PY++QNG+ +F +PGQ+Y +L + YATMMLPQP T +YLP A +P A + + QQVT Sbjct: 37 PKFGTLIPNRIFVGGIPSNTTEQELKSFFSSFGQVKDVKIISDRLGVSKGSYGFVTFESQEMAEKIIKNESETLIFKDRKLNIGHAIRKQQMFPRADLPAALFFAGGAMPYSIQNGMAVFSLPGQEYPMLTQATAPYATMMLPQPGGGTTLYLPSAASATASPYAQL----SQQQVT 209
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A075AGA8 (RRM domain-containing protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=T265_13550 PE=4 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 9.672e-61 Identity = 110/177 (62.15%), Postives = 137/177 (77.40%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLY-NGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQP--TTAMYLPQPQYAYQTPTAVIPSPNNGQQVT 772 PK GTLIPNRIFVGGI SNTTE+ELK FFSS+G +KDVKII+DR G+SKGSYGFVTFE+QE AEKIIKNE+ETLIFK+RKLNIGHA+RKQ +FPR ++ + + G +PY++QNG+ +F +PGQ+Y +L + YATMMLPQP T +YLP A +P A + + QQVT Sbjct: 9 PKFGTLIPNRIFVGGIPSNTTEQELKSFFSSFGQVKDVKIISDRLGVSKGSYGFVTFESQEMAEKIIKNESETLIFKDRKLNIGHAIRKQQMFPRADLPAALFFAGGAMPYSIQNGMAVFSLPGQEYPMLTQATAPYATMMLPQPGGGTTLYLPSAASATASPYAQL----SQQQVT 181
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4S2MEX8 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001898 PE=4 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 1.319e-60 Identity = 110/177 (62.15%), Postives = 137/177 (77.40%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLY-NGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQP--TTAMYLPQPQYAYQTPTAVIPSPNNGQQVT 772 PK GTLIPNRIFVGGI SNTTE+ELK FFSS+G +KDVKII+DR G+SKGSYGFVTFE+QE AEKIIKNE+ETLIFK+RKLNIGHA+RKQ +FPR ++ + + G +PY++QNG+ +F +PGQ+Y +L + YATMMLPQP T +YLP A +P A + + QQVT Sbjct: 37 PKFGTLIPNRIFVGGIPSNTTEQELKSFFSSFGQVKDVKIISDRLGVSKGSYGFVTFESQEMAEKIIKNESETLIFKDRKLNIGHAIRKQQMFPRADLPAALFFAGGAMPYSIQNGMAVFSLPGQEYPMLTQATAPYATMMLPQPGGGTTLYLPSAASATASPYAQL----SQQQVT 209
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000005184.2 (pep primary_assembly:Astyanax_mexicanus-2.0:10:7750630:7761219:-1 gene:ENSAMXG00000005058.2 transcript:ENSAMXT00000005184.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 115.161 bits (287), Expect = 2.569e-28 Identity = 67/187 (35.83%), Postives = 103/187 (55.08%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQ---HLFPRQEISGTVL-YNGPV-----------PYALQNGLTLFQVPGQDYSVLASQSPQY----------ATMMLPQPTTAMYLPQPQYAYQTPTAVIP 745 GT+IPNRIFVGGI E +L+ FFS YG I++V I+ DR G+SKG YGFVTFE QE A+KI+ ++A+ L F+++++N+G A RKQ H + G+ + Y P PY NG+ F P + + SP + +++M+ +++ +PQP + Q + +P Sbjct: 32 GTVIPNRIFVGGIGGKAKENDLRCFFSEYGVIREVNIVTDRDGISKG-YGFVTFETQEDAQKIL-HDADRLSFRDKRINVGQAFRKQLKGHYSYTADTQGSSMAYQAPFGTTYLTTPTGYPYTYHNGVAYFHTPEPN-----TLSPSHWHAPPHTMSGSSVMVTHSASSICIPQPYHNSQASSQYVP 211
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: dazl (deleted in azoospermia like [Source:NCBI gene;Acc:103038434]) HSP 1 Score: 74.7146 bits (182), Expect = 9.738e-15 Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQH 523 G L PN +FVGGI E E++ FF+ YG +K+VKII R G+ KG YGFV F + I++ + + FK +KL +G A+ K+ Sbjct: 26 GKLTPNTLFVGGIDMKVEENEIRDFFARYGAVKEVKIITYRGGICKG-YGFVYFSEDVDIQTIVEQQ---ISFKGKKLKLGPAIMKER 109
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: msi2b (RNA-binding protein Musashi homolog 2 [Source:NCBI gene;Acc:103023867]) HSP 1 Score: 60.4622 bits (145), Expect = 2.764e-9 Identity = 30/94 (31.91%), Postives = 54/94 (57.45%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFP 532 PK+ T +IFVGG+++NT E++K +F +G ++D ++ D+T +GFVTFEN++ EK+ + + + + A K+ +FP Sbjct: 103 PKMVTRT-KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEI--NNKMVECKKAQPKEVMFP 193 HSP 2 Score: 51.2174 bits (121), Expect = 2.626e-6 Identity = 22/83 (26.51%), Postives = 43/83 (51.81%), Query Frame = 2 Query: 272 PNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQ 520 P ++F+GG++ T+ + L+ +FS +G I++ ++ D T +GFVTF + + +K++ L K + R Q Sbjct: 20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLGQPHHELDSKTIDPKVAFPRRAQ 102
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: msi2a (RNA-binding protein Musashi homolog 2-like [Source:NCBI gene;Acc:103045937]) HSP 1 Score: 60.4622 bits (145), Expect = 2.799e-9 Identity = 30/94 (31.91%), Postives = 54/94 (57.45%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFP 532 PK+ T +IFVGG+++NT E++K +F +G ++D ++ D+T +GFVTFEN++ EK+ + + + + A K+ +FP Sbjct: 103 PKMVTRT-KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEI--NNKMVECKKAQPKEVMFP 193 HSP 2 Score: 51.2174 bits (121), Expect = 2.455e-6 Identity = 22/83 (26.51%), Postives = 43/83 (51.81%), Query Frame = 2 Query: 272 PNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQ 520 P ++F+GG++ T+ + L+ +FS +G I++ ++ D T +GFVTF + + +K++ L K + R Q Sbjct: 20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQPHHELDSKTIDPKVAFPRRAQ 102
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: msi1 (musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]) HSP 1 Score: 60.8474 bits (146), Expect = 2.868e-9 Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIK 454 PK+ T +IFVGG++ NTT E++K +F +G + D ++ D+T +GFVTFEN++ EK+ + Sbjct: 174 PKLVTRT-KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 240
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: BOLL (boule homolog, RNA binding protein [Source:HGNC Symbol;Acc:HGNC:14273]) HSP 1 Score: 139.813 bits (351), Expect = 4.663e-37 Identity = 78/170 (45.88%), Postives = 107/170 (62.94%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL----FPRQEISGTVLYNGPV--PYALQNGLTLFQVPGQDYSVLASQSPQ----YATMMLPQPTTAMYLPQPQYAYQTP 730 P+ GT+IPNRIFVGGI E ELK +F+ +G +KDVKIINDR G+SKG YGFVTFE+QE A+K I+ EAE +++K++KLNIG A+RKQ + FP SG+++ P+ NG+ FQ P ++ PQ + M++P P + QP Y+YQ P Sbjct: 34 PRYGTVIPNRIFVGGIDFKVNEAELKKYFTQFGVVKDVKIINDRAGVSKG-YGFVTFESQEDAQK-IQQEAEKIMYKDKKLNIGPAIRKQQVGFPQFPLTPASGSMVLTTSTGQPFLFHNGVAYFQQPD---AMPVQMPPQTYYSHQPMLIPSPQASPVFQQPAYSYQAP 198
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030]) HSP 1 Score: 63.1586 bits (152), Expect = 7.686e-11 Identity = 30/87 (34.48%), Postives = 49/87 (56.32%), Query Frame = 2 Query: 266 LIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHL 526 L +IFVGGI NT E+ L+ +FS YG ++ V ++ DR K +GFVTF + + +K++ + T+ K + A+ KQ + Sbjct: 121 LKVKKIFVGGIKDNTDEDHLRDYFSEYGMVESVDVMEDRQSGKKRGFGFVTFSDHDAVDKVVVQKYHTI--NGHKAEVRKALSKQEM 205
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030]) HSP 1 Score: 60.077 bits (144), Expect = 2.113e-10 Identity = 25/69 (36.23%), Postives = 43/69 (62.32%), Query Frame = 2 Query: 266 LIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETL 472 L +IFVGGI +T E+ L+ +F YG ++ +++ DR+ K +GFVTF + +T +K+I + T+ Sbjct: 97 LKVKKIFVGGIRDDTDEQHLREYFQVYGDVEAAEVMEDRSTGKKRGFGFVTFSDHDTVDKVIVQKYHTI 165
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: rbm24a (RNA binding motif protein 24a [Source:NCBI gene;Acc:405801]) HSP 1 Score: 59.6918 bits (143), Expect = 4.108e-10 Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 2 Query: 278 RIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDR-TGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNI 499 +IFVGG+ +TT+ L+ FF ++G I + +I DR +G S+G YGFVT ++ +AE+ K+ I RK N+ Sbjct: 13 KIFVGGLPYHTTDASLRAFFEAFGEIDEAVVITDRQSGKSRG-YGFVTMADRASAERACKD--PNPIIDGRKANV 84
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Match: rbmx (RNA binding motif protein X-linked [Source:NCBI gene;Acc:321860]) HSP 1 Score: 60.8474 bits (146), Expect = 5.143e-10 Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 2 Query: 257 IGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDR-TGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVR 514 +G P ++FVGG+ +TTE+ L+ FS YG + DV ++ DR T LS+G + FVTF N E A K + +A + + R + + A + Sbjct: 1 MGEADPGKLFVGGLNIDTTEKALEATFSKYGRVADVLLMKDRETNLSRG-FAFVTFANPEDA-KEAERDANGKVLEGRAMRVDQATK 85
BLAST of RRM domain-containing protein vs. Ensembl Yeast
Match: HRP1 (Subunit of cleavage factor I; cleavage factor I is a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences; required for genome stability [Source:SGD;Acc:S000005483]) HSP 1 Score: 57.3806 bits (137), Expect = 5.111e-9 Identity = 29/78 (37.18%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 278 RIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDR-TGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHA 508 +IFVGGI + +E + FFS +G I D +++ D+ TG S+G +GFVT+++ + +++ +N+ + FK+RK+ I A Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRG-FGFVTYDSADAVDRVCQNKF--IDFKDRKIEIKRA 318 HSP 2 Score: 55.0694 bits (131), Expect = 2.438e-8 Identity = 23/60 (38.33%), Postives = 43/60 (71.67%), Query Frame = 2 Query: 278 RIFVGGITSNTTEEELKIFFSSYGPIKDVKIIND-RTGLSKGSYGFVTFENQETAEKIIK 454 ++F+GG+ +TTE+ L+ +F YG + D+KI+ D TG S+G +GF++FE + ++++K Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRG-FGFLSFEKPSSVDEVVK 218
BLAST of RRM domain-containing protein vs. Ensembl Yeast
Match: NAM8 (RNA binding protein, component of the U1 snRNP protein; mutants are defective in meiotic recombination and in formation of viable spores, involved in the formation of DSBs through meiosis-specific splicing of REC107 pre-mRNA; Nam8p regulon embraces the meiotic pre-mRNAs of REC107, HFM1, AMA1 SPO22 and PCH2; the putative RNA binding domains RRM2 and RRM3 are required for Nam8p meiotic function [Source:SGD;Acc:S000001128]) HSP 1 Score: 50.447 bits (119), Expect = 6.892e-7 Identity = 33/97 (34.02%), Postives = 53/97 (54.64%), Query Frame = 2 Query: 281 IFVGGITSNTTEEEL-KIFFSSYGPIKDVKIINDR-TGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYN 565 IFVG + N TE +L ++F + Y KI++D+ TG+SKG YGFV F N + +++ +E + + R + +G +Q Q +SG YN Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKG-YGFVKFTNSD-EQQLALSEMQGVFLNGRAIKVGPTSGQQ-----QHVSGNNDYN 254
BLAST of RRM domain-containing protein vs. Ensembl Yeast
Match: PAB1 (Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex [Source:SGD;Acc:S000000967]) HSP 1 Score: 47.7506 bits (112), Expect = 6.016e-6 Identity = 30/91 (32.97%), Postives = 48/91 (52.75%), Query Frame = 2 Query: 281 IFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIK--NEAETLIFKERKLNIGHAVRKQ---HLFPRQ 538 ++V I S TT+E+ + F+ +GPI + D G KG +GFV +E E A K ++ N++E KL +G A +K H+ +Q Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG-FGFVNYEKHEDAVKAVEALNDSE---LNGEKLYVGRAQKKNERMHVLKKQ 307
BLAST of RRM domain-containing protein vs. Ensembl Yeast
Match: RIE1 (Putative RNA binding protein; localizes to stress granules induced by glucose deprivation; interacts with Rbg1p in a two-hybrid assay; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000003482]) HSP 1 Score: 47.3654 bits (111), Expect = 7.704e-6 Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 2 Query: 272 PNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTF 421 P IFVGGI + + EL FS YGPI +K+I D+T YGF+++ Sbjct: 194 PGNIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISY 243
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO40536 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S6X1]) HSP 1 Score: 83.5741 bits (205), Expect = 1.088e-18 Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 2 Query: 263 TLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIIND-RTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQ 520 + P R+FVGG+ TTE EL+ FFS++GP+ DV+I+ D RTGL+KG +GF+TF +E A+K+I E + FK R L + A+RK+ Sbjct: 13 VIYPTRVFVGGLARGTTELELETFFSNFGPVADVRIVCDRRTGLNKG-FGFITFSLEEPAKKLI--EQNNIDFKGRSLRLRQAIRKK 96
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO45185 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RTC5]) HSP 1 Score: 82.0333 bits (201), Expect = 8.379e-18 Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 2 Query: 272 PNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQN 592 PNRIFVGG+ TT EL+ F SYG ++DVKI D G+S+G YGFVTF + A+K+ K T+ +K ++L IG A RK Y+ VP AL+ Sbjct: 9 PNRIFVGGVAFQTTAIELRELFESYGAVRDVKIARDGEGVSRG-YGFVTFFRDDDAKKVFK--LGTVFYKGKRLVIGEAYRKLQF----------TYHSHVPRALRG 102
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO43157 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZJ6]) HSP 1 Score: 77.0258 bits (188), Expect = 2.975e-16 Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 2 Query: 257 IGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQ 520 +G PN+IFVGG+ TT EEL FF+++G + + K+I D G+SKG YGFV+F +QE + TL + +KLN+G AV+K+ Sbjct: 7 LGKRYPNKIFVGGLPPLTTAEELANFFANFGHVVESKVIFDHDGISKG-YGFVSFRSQEDVSCV--KAMGTLFLRNKKLNLGPAVKKE 91
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO31802 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SWW5]) HSP 1 Score: 67.781 bits (164), Expect = 2.380e-14 Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 2 Query: 269 IPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAE 442 I RIFV G TTE EL+ FF YG +K+ KI+ D+ G+SKG Y F+TFE+QE A+ Sbjct: 6 ISKRIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKG-YAFITFESQEVAD 62
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Match: EDO49349 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG33]) HSP 1 Score: 57.3806 bits (137), Expect = 1.314e-9 Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 2 Query: 278 RIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKE 484 +IF+GG+ NTTEE LK +FS +G I D +I R G S+G +GFVT+E+ ++ +++K + L +E Sbjct: 1 KIFIGGLNWNTTEEGLKDYFSQWGTIVDC-VIMKRDGRSRG-FGFVTYESSDSVNEVLKKKDHVLDDRE 67 HSP 2 Score: 46.9802 bits (110), Expect = 4.816e-6 Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 2 Query: 278 RIFVGGITSNTTEEELKIFFSS------YGPIKDVKIINDRTGLSK-GSYGFVTFENQETAEKII 451 +IFVGG+ S T EE++K +F+S G + DV + DR + + FVTF+N E EK+ Sbjct: 90 KIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVC 154
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: boll (boule homolog, RNA binding protein [Source:NCBI gene;Acc:100302724]) HSP 1 Score: 93.2041 bits (230), Expect = 8.715e-20 Identity = 59/176 (33.52%), Postives = 91/176 (51.70%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRK-QHLFPRQEISGTVLYNGPV------------PYALQNGLTLFQVPGQDYSVLASQSP-------QYATMMLPQPTTA-MYLPQPQYAYQ 724 GT+IPNRIFVGG+ TE L FS YG + +VKI+ +R+G+SKG YGFVTFE E I+ ++A + ++++K +I AV+K Q P + +++ P PY NG+ F P + + P Q+ + + P+TA +Y Q ++ YQ Sbjct: 35 GTIIPNRIFVGGVDYKVTENHLHHIFSHYGTVTEVKIVTNRSGMSKG-YGFVTFEAPEDVVNIL-SKANRICYRDKKFSISQAVQKSQAPGPGSIVHKPFIHHDPTCDTVYLTTPAGFPYTFHNGVAYFNCPAMNQAARQWSPPQSFPQHLQWNAVQVQAPSTAVLYSQQAEFLYQ 208
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: dazl (deleted in azoospermia like [Source:NCBI gene;Acc:100049418]) HSP 1 Score: 67.0106 bits (162), Expect = 4.005e-12 Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQ 520 G L PN +FVGGI E E+K FF+ YG +++VKII R GL KG YGFV F N++ I + +IF RKL +G A+ K+ Sbjct: 27 GKLTPNSLFVGGIDMKVDENEIKEFFARYGSVREVKIIRYRGGLCKG-YGFVYF-NEDV--DIQSIIEQQIIFMGRKLKLGPAILKE 109
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: dazl (deleted in azoospermia like [Source:NCBI gene;Acc:100049418]) HSP 1 Score: 67.0106 bits (162), Expect = 4.005e-12 Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQ 520 G L PN +FVGGI E E+K FF+ YG +++VKII R GL KG YGFV F N++ I + +IF RKL +G A+ K+ Sbjct: 27 GKLTPNSLFVGGIDMKVDENEIKEFFARYGSVREVKIIRYRGGLCKG-YGFVYF-NEDV--DIQSIIEQQIIFMGRKLKLGPAILKE 109
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: dazl (deleted in azoospermia like [Source:NCBI gene;Acc:100049418]) HSP 1 Score: 67.0106 bits (162), Expect = 4.131e-12 Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 2 Query: 260 GTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQ 520 G L PN +FVGGI E E+K FF+ YG +++VKII R GL KG YGFV F N++ I + +IF RKL +G A+ K+ Sbjct: 27 GKLTPNSLFVGGIDMKVDENEIKEFFARYGSVREVKIIRYRGGLCKG-YGFVYF-NEDV--DIQSIIEQQIIFMGRKLKLGPAILKE 109
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: msi1 (musashi RNA binding protein 1 [Source:NCBI gene;Acc:101173434]) HSP 1 Score: 60.4622 bits (145), Expect = 2.934e-9 Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 2 Query: 251 PKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIK 454 PK+ T +IFVGG++ NTT E++K +F +G + D ++ D+T +GFVTFEN++ EK+ + Sbjct: 102 PKLVTRT-KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 168 HSP 2 Score: 53.5286 bits (127), Expect = 4.903e-7 Identity = 25/83 (30.12%), Postives = 42/83 (50.60%), Query Frame = 2 Query: 272 PNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQ 520 P ++F+GG++ TT+E LK +F YG +K+ ++ D +GFVTF +Q +K++ L K + R Q Sbjct: 19 PCKMFIGGLSWQTTQEGLKEYFCKYGEVKECMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQ 101
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000018666.1 (SMESG000018666.1) HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0 Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 2 Query: 146 MSTDSQLTPKVDTLAQEFQVSLXXXXXXXXXXXXXPKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIPSPNNGQQVTFTQNXXXXXXXXXXXXWYTLAGLTAAPXXXXXXXXXXXXXXXAQTLRWAATTGSQSPPHNNVAPAATYLLSPMASASGHEVLYIPHTGACTPXXXXXXXXXXXXXXILDSNEHNENTLVRGSLQYATFNGSDRIIPIGHAAPGSAHRLFTGPNSGLQSGTQFNPXXXXXXXXXXXXXXXXXXCGQIARMIPACSVLTASNLSRPLSRGAPGDNMQMCNNHQ 1435 MSTDSQLTPKVDTLAQEFQVSLAAVNQATMTAAANPKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIPSPNNGQQVTFTQNGPGSAGSAAAAPWYTLAGLTAAPQSSSQISSNNSSNSIAQTLRWAATTGSQSPPHNNVAPAATYLLSPMASASGHEVLYIPHTGACTPNSNNDFSSDNVNANILDSNEHNENTLVRGSLQYATFNGSDRIIPIGHAAPGSAHRLFTGPNSGLQSGTQFNPQAFNNSQSQLSQAALAAQCGQIARMIPACSVLTASNLSRPLSRGAPGDNMQMCNNHQ Sbjct: 1 MSTDSQLTPKVDTLAQEFQVSLAAVNQATMTAAANPKIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNGPVPYALQNGLTLFQVPGQDYSVLASQSPQYATMMLPQPTTAMYLPQPQYAYQTPTAVIPSPNNGQQVTFTQNGPGSAGSAAAAPWYTLAGLTAAPQSSSQISSNNSSNSIAQTLRWAATTGSQSPPHNNVAPAATYLLSPMASASGHEVLYIPHTGACTPNSNNDFSSDNVNANILDSNEHNENTLVRGSLQYATFNGSDRIIPIGHAAPGSAHRLFTGPNSGLQSGTQFNPQAFNNSQSQLSQAALAAQCGQIARMIPACSVLTASNLSRPLSRGAPGDNMQMCNNHQ 430
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000061507.1 (SMESG000061507.1) HSP 1 Score: 147.132 bits (370), Expect = 8.524e-39 Identity = 77/132 (58.33%), Postives = 95/132 (71.97%), Query Frame = 2 Query: 254 KIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVLYNG-PVPYALQNGLTLFQVPGQDYSVLASQ 646 KI TLIPNRIFVGG NTTEEELK FF YG IKDVKII D+ G +KGSYGFVTF +QE AE+II +AETL+F++RKLNIG AV+KQ L + E+ T++ N P+ Y +++ P QDYS L +Q Sbjct: 24 KISTLIPNRIFVGGFPQNTTEEELKSFFCKYGEIKDVKIIPDKAGQAKGSYGFVTFASQEVAERIITEQAETLVFRDRKLNIGRAVKKQPLTGKSELQNTLILNTLPLSYG-----SVY--PYQDYSYLFNQ 148
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000061507.1 (SMESG000061507.1) HSP 1 Score: 100.523 bits (249), Expect = 3.362e-25 Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 2 Query: 254 KIGTLIPNRIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDRTGLSKGSYGFVTFENQETAEKIIKNE 460 KI TLIPNRIFVGG NTTEEELK FF YG IKDVKII D+ G +KGSYGFVTF +QE AE+II + Sbjct: 24 KISTLIPNRIFVGGFPQNTTEEELKSFFCKYGEIKDVKIIPDKAGQAKGSYGFVTFASQEVAERIITEQ 92
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000006741.1 (SMESG000006741.1) HSP 1 Score: 67.781 bits (164), Expect = 5.646e-12 Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 2 Query: 278 RIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDR-TGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVL 559 +IFVGG+ +TT+E L++FF +GPI++ +I DR +G S+G YGFVT N E A + I N + ++ +N+ K + P ++ L Sbjct: 35 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRG-YGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMAL 128
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000006741.1 (SMESG000006741.1) HSP 1 Score: 63.5438 bits (153), Expect = 1.064e-11 Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 2 Query: 278 RIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDR-TGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVL 559 +IFVGG+ +TT+E L++FF +GPI++ +I DR +G S+G YGFVT N E A + I N + ++ +N+ K + P ++ L Sbjct: 35 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRG-YGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMAL 128 The following BLAST results are available for this feature:
BLAST of RRM domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RRM domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 4
BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of RRM domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30020626 ID=SMED30020626|Name=RRM domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2287bpback to top protein sequence of SMED30020626-orf-1 >SMED30020626-orf-1 ID=SMED30020626-orf-1|Name=SMED30020626-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=431bp MSTDSQLTPKVDTLAQEFQVSLAAVNQATMTAAANPKIGTLIPNRIFVGGback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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