cleavage and polyadenylation specificity factor subunit 3

Overview
Namecleavage and polyadenylation specificity factor subunit 3 (AHY82408.1)
Smed IDSMED30020565
Length (bp)2302
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of cleavage and polyadenylation specificity factor subunit 3 (SMED30020565) t-SNE clustered cells

Violin plots show distribution of expression levels for cleavage and polyadenylation specificity factor subunit 3 (SMED30020565) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of cleavage and polyadenylation specificity factor subunit 3 (SMED30020565) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for cleavage and polyadenylation specificity factor subunit 3 (SMED30020565) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30020565

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30020565SMESG000066903.1 SMESG000066712.1 SmedASXL_019134SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30020565SMESG000066903.1 SMESG000066712.1 SmedASXL_019134SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
gutSMED30020565SMESG000066903.1 SMESG000066712.1 SMESG000002177.1 dd_Smed_v4_2005_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30020565SMESG000066903.1 SMESG000066712.1 SMESG000002177.1 dd_Smed_v4_2005_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30020565SMESG000066903.1 SMESG000066712.1 SMESG000002177.1 dd_Smed_v4_2005_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30020565SMESG000066903.1 SMESG000066712.1 SMESG000002177.1 dd_Smed_v4_2005_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Human
Match: CPSF3 (cleavage and polyadenylation specific factor 3 [Source:HGNC Symbol;Acc:HGNC:2326])

HSP 1 Score: 811.987 bits (2096), Expect = 0.000e+0
Identity = 404/685 (58.98%), Postives = 511/685 (74.60%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLA--KMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQ----DKKLESIVLGTIQRLFHCLMPV 2166
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RKQ   N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +KP  GQR+ GILVK+NF+YHI++P DL  YTDL+ S V+Q  ++ +  P +LL + L  + G++E L ++ +K   +VF  I V  EP +VV+EW  NP NDM+AD VT + ++ +      +G  Q    K+   +Y   +   + D+FG+  ++      D +I+ +  D K   +N    TV+C +    D+ L  +V    QRL+  L PV
Sbjct:    7 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQ-EKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVK----DDSILSVTVDGKTANLNLETRTVECEEGSEDDESLREMVELAAQRLYEALTPV 683
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Human
Match: CPSF3 (cleavage and polyadenylation specific factor 3 [Source:HGNC Symbol;Acc:HGNC:2326])

HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 380/654 (58.10%), Postives = 482/654 (73.70%), Query Frame = 1 
Query:  223 ILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLA--KMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQ----DKKLESIVLGTIQRLFHCLMPV 2166
            +LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RKQ   N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +KP  GQR+ GILVK+NF+YHI++P DL  YTDL+ S V+Q  ++ +  P +LL + L  + G++E L ++ +K   +VF  I V  EP +VV+EW  NP NDM+AD VT + ++ +      +G  Q    K+   +Y   +   + D+FG+  ++      D +I+ +  D K   +N    TV+C +    D+ L  +V    QRL+  L PV
Sbjct:    1 MLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQ-EKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVK----DDSILSVTVDGKTANLNLETRTVECEEGSEDDESLREMVELAAQRLYEALTPV 646
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Human
Match: INTS11 (integrator complex subunit 11 [Source:HGNC Symbol;Acc:HGNC:26052])

HSP 1 Score: 333.569 bits (854), Expect = 4.422e-104
Identity = 178/453 (39.29%), Postives = 267/453 (58.94%), Query Frame = 1 
Query:  142 ELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEING-IKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNL-RAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETV 1482
            E+++TPLGAGQ+VGRSC+L+   GK ++LDCG+H G       P            +  D ++ISHFHLDHCGALP+     G     YMTH T+AI   +L DY +++ +     + +  + I + + K+  +  HQ ++++  ++  AY+AGHVLGAAMF I++    ++YTGD++   DRHL +A I   RP +LITE+TY T I D +  RE  F   VH  V RGG+ LIP FALGRAQEL ++L+ +W +      +PIY+++ L  K    Y+ +I   N+++RK     +N F F+HI    RA    D+  P VV A+PGM+ +G S ++F  W  + +N VI+ GYCV+GT+  +ILS   ++     Q L +K  V+Y+SFSAH D +   + + + +P  V+LVHGE  +M  LK  +++E       R++   P N ETV
Sbjct:    3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFSTGLTEKANHYYKLFIPWTNQKIRK-TFVQRNMFEFKHIKAFDRAF--ADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQE------LRVNCYMPANGETV 444
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Human
Match: INTS11 (integrator complex subunit 11 [Source:HGNC Symbol;Acc:HGNC:26052])

HSP 1 Score: 322.398 bits (825), Expect = 7.104e-100
Identity = 174/446 (39.01%), Postives = 260/446 (58.30%), Query Frame = 1 
Query:  163 GAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEING-IKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNL-RAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETV 1482
            GAGQ+VGRSC+L+   GK ++LDCG+H G       P            +  D ++ISHFHLDHCGALP+     G     YMTH T+AI   +L DY +++ +     + +  + I + + K+  +  HQ ++++  ++  AY+AGHVLGAAMF I++    ++YTGD++   DRHL +A I   RP +LITE+TY T I D +  RE  F   VH  V RGG+ LIP FALGRAQEL ++L+ +W +      +PIY+++ L  K    Y+ +I   N+++RK     +N F F+HI    RA    D+  P VV A+PGM+ +G S ++F  W  + +N VI+ GYCV+GT+  +ILS   ++     Q L +K  V+Y+SFSAH D +   + + + +P  V+LVHGE  +M  LK  +++E       R++   P N ETV
Sbjct:   16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFSTGLTEKANHYYKLFIPWTNQKIRK-TFVQRNMFEFKHIKAFDRAF--ADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQE------LRVNCYMPANGETV 450
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Human
Match: INTS11 (integrator complex subunit 11 [Source:HGNC Symbol;Acc:HGNC:26052])

HSP 1 Score: 298.901 bits (764), Expect = 3.006e-91
Identity = 166/453 (36.64%), Postives = 251/453 (55.41%), Query Frame = 1 
Query:  142 ELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDD--LDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETV 1482
            E+++TPLGAGQ+VGRSC+L+   GK ++LDCG+H G       P            +  D ++ISHFHLDHCGALP+     G     YMTH T+AI   +L DY +++ +     + +  + I + + K+  +  HQ ++I                     ++    ++YTGD++   DRHL +A I   RP +LITE+TY T I D +  RE  F   VH  V RGG+ LIP FALGRAQEL ++L+ +W +      +PIY+++ L  K    Y+ +I   N+++RK     +N F F+HI   +A D    D+  P VV A+PGM+ +G S ++F  W  + +N VI+ GYCV+GT+  +ILS   ++     Q L +K  V+Y+SFSAH D +   + + + +P  V+LVHGE  +M  LK  +++E       R++   P N ETV
Sbjct:    3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQI---------------------KVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFSTGLTEKANHYYKLFIPWTNQKIRK-TFVQRNMFEFKHI---KAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQE------LRVNCYMPANGETV 422
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Celegans
Match: cpsf-3 (Cleavage and Polyadenylation Specificity Factor [Source:UniProtKB/TrEMBL;Acc:Q95PY8])

HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 331/618 (53.56%), Postives = 444/618 (71.84%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSN-NGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDK-----------QIFRVF-GVIDVT--WEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQ 1938
            + SD L  TPLG+GQEVGRSC LL++KGK+++LDCG+HPGL G + LPF+D ++      L++ +HFHLDHCGALP LL KT  + +C+MTHATKAIYR +L DY+R+S   G   + LY E D+  S+ KI+TIDF +Q E+NGI+F  Y AGHVLGA  FMIEIAGV++LYTGDFS  EDRHL +AEIPP  P+VLITE+TYGT  H+ R  RE RFT +VH+IV+RGGRCLIPAFA+G AQELMLILDEYW  H EL  IP+YYAS LA+KC+SVYQT+++ MN R++KQ  A +NPF+F+H+S LR +D  +D  PCVV+A+PGM+QSG SRELFE+WC D +NG IIAGYCVEGTLAK ILS P E+ +++G+ LP++  V Y+SFSAHTDY QTS F++ LKP H++LVHGE +EM +LK  ++R+++DD +  I++  P NTE +Q +FRGEK AK++G+LA + P N + I G+LVK NFSY I+ P +L  YT L  S + Q++S+ +     LL F+L  +  N +  L++  K           Q   VF G ++VT      +VV+ W +NP+ DM+AD+V    + A+   +P + +P  +   Q
Sbjct:    6 DNSDSLCFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDLLLI-THFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDYVRISKYGGPDRNQLYTEDDLEKSMAKIETIDFREQKEVNGIRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCLEDRHLCAAEIPPITPQVLITESTYGTQTHEDRAVREKRFTQMVHDIVTRGGRCLIPAFAIGPAQELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQKQI-AVKNPFIFKHVSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFESWCPDTKNGCIIAGYCVEGTLAKHILSEPEEIVSLSGEKLPMRMQVGYVSFSAHTDYHQTSNFVKALKPPHLVLVHGELHEMSRLKSGIERQFQDD-NIPIEVHNPRNTERLQLQFRGEKTAKVIGKLAQRVPENNETISGVLVKNNFSYSIMVPEELGSYTSLRISSLEQRMSVHYSGSLKLLIFNLQQL--NDDACLIQNIKLKEISKKGSVTQAITVFQGKVNVTVYGNDHVVVVRWDSNPVYDMYADSVVAAILHAQANPVPDKYLPSNSSFPQ 618
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Celegans
Match: F10B5.8 (pep chromosome:WBcel235:II:8141213:8143478:-1 gene:WBGene00008642.1 transcript:F10B5.8.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F10B5.8)

HSP 1 Score: 330.102 bits (845), Expect = 4.291e-103
Identity = 177/453 (39.07%), Postives = 267/453 (58.94%), Query Frame = 1 
Query:  142 ELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEI-NGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEI-PPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETV 1482
            E+KI PLGAGQ+VGRSC+L+   GK I++DCG+H G +     P            +  D ++ISHFHLDHCG+LPH+    G     YMT+ TKAI   +L DY +V  +     + +   DI N + K+     H+ I + N +   A++AGHVLGAAMF I +    +LYTGD++   DRHL +A + P  RP VLI+E+TY T I D +  RE  F   VH  V +GG+ +IP FALGRAQEL ++L+ YW +     ++PIY++  LA +    Y+ +I   NE ++K     +N F F+HI  +    + D   P V+ ++PGM+  G S ++F+ WC D  N +I+ GYCV GT+  ++++   ++  ++ +   ++  V+Y+SFSAH D +   + IR+ +P HVM VHGE ++M  LKG +++E      Y++ +  P N ETV
Sbjct:    7 EIKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDCVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFTSDDIKNCMKKVVGCALHEIIHVDNELSIRAFYAGHVLGAAMFEIRLGDHSVLYTGDYNMTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHECVMKGGKVIIPVFALGRAQELCILLESYWERMA--LNVPIYFSQGLAERANQYYRLFISWTNENIKKTF-VERNMFEFKHIKPMEKGCE-DQPGPQVLFSTPGMLHGGQSLKVFKKWCSDPLNMIIMPGYCVAGTVGARVINGEKKI-EIDQKMHEIRLGVEYMSFSAHADAKGIMQLIRQCEPQHVMFVHGEASKMEFLKGKVEKE------YKVPVHMPANGETV 448
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Celegans
Match: cpsf-2 (Probable cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O17403])

HSP 1 Score: 151.754 bits (382), Expect = 1.050e-37
Identity = 112/373 (30.03%), Postives = 186/373 (49.87%), Query Frame = 1 
Query:  145 LKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHP--GLRGSECL-PFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEI---NGIKFTAYHAGHVLGAAMFMI-EIAGVKILYTGDFSRQEDRHLMSAEIPP-ARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQ-HPELQSIPIYYASQLARKCISVYQTYIHAMNERVRK--QQEANQNPFVFQHISNLRAIDDLDDNR-PCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILS 1227
            +K+      ++ G  C LL+  G  I+LDCG     GL+  E L PF+  I  +        SH    H G LP+L+ K GL +  Y T     + +  + D +  S+        Y   D+  + +K++ + ++Q + +   +G+ FTA  AGH+LG +++ I  + G  I+Y  DF+ +++RHL         RP +LIT A + +    +R++R+ +  T +   V + G C+I     GR  EL  +LD+ WS     L +  +   S +A   +   ++ +  MNE++ K     A  NPF  +H++   +  +L   R P VV+ S   M+SG SRELF +WC D RNGVI+       TLA ++++
Sbjct:    5 IKLKVFSGAKDEGPLCYLLQVDGDYILLDCGWDERFGLQYFEELKPFIPKISAVLI------SHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMV-YSHLDVEEFEHYTLDDVDTAFEKVEQVKYNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKERHLNGCSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEKLFKYDSSSARYNPFTLKHVTLCHSHQELMRVRSPKVVLCSSQDMESGFSRELFLDWCSDPRNGVILTARPASFTLAAKLVN 370
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Celegans
Match: F19F10.12 (pep chromosome:WBcel235:V:7575750:7581532:1 gene:WBGene00017608.1 transcript:F19F10.12.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F19F10.12)

HSP 1 Score: 55.0694 bits (131), Expect = 1.858e-7
Identity = 66/326 (20.25%), Postives = 128/326 (39.26%), Query Frame = 1 
Query:  484 YNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILY-TGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQ-SIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHI---SNLRAIDDL------DDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYE 1428
            Y   D+ + L K+ T+ F+Q I++  IK T   +GH  G+A + I+    +  Y +       D  LM  E  P R    I   +    +    +E        + +++ + G  L+P   +G   E++  + +  +    +    PIY+ S +A+  I++       M+E  +      + P+   ++     ++  D L      +   PCV+ AS   ++ G +  + E    D +N VI+                P E      ++LP+K     I      D+      + + KP +V+        M++ +  +Q  YE
Sbjct:  174 YTTTDMHSCLAKVITLSFNQTIDLFRIKVTPVVSGHTYGSAYWTIKTENEQFAYLSASNPSATDVKLM--ETAPLRAVDHILVTSLSRLVDTTAKEMGYSLIKTITDVLKKHGSVLLPICPVGPIFEMIEAVSDIITTTNGIPLDTPIYFISPVAKSAIAMASISAEWMSESRQNAVYLPEEPYSHSNLIKSGRVKIYDSLYGSFSKEFKTPCVIFASHASLRIGDAAHMVEVLGSDPKNAVIVTD-----------PDLPCEDVREPFRNLPIK--FINIPMDFRMDFASLERLLADAKPKYVLCSSSYTRPMIR-RPDMQINYE 483
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Fly
Match: Cpsf73 (gene:FBgn0261065 transcript:FBtr0083690)

HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0
Identity = 393/679 (57.88%), Postives = 512/679 (75.41%), Query Frame = 1 
Query:  127 EEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLV-AGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCLM 2160
            +EESD L+I PLGAGQEVGRSC++L+FKGKKI+LDCGIHPGL G + LP++D+I+  E   L + SHFHLDHCGALP  L KT  + RC+MTHATKAIYR++L+DYI++SN  S+   LY E D+  S++KI+TI+FH++ ++ G++F AY AGHVLGAAMFMIEIAG+KILYTGDFSRQEDRHLM+AE+PP +P+VLITE+TYGTHIH+KRE+RE RFT+LV  IV +GGRCLIP FALGRAQEL+LILDE+WSQ+P+L  IPIYYAS LA+KC++VYQTYI+AMN+R+R+Q   N NPFVF+HISNL+ ID  +D  PCV+MASPGMMQSGLSRELFE+WC D +NGVIIAGYCVEGTLAK +LS P E+ T++GQ LPL  SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK ALQREYE D S  I    P NT  V   FRGEK AK++G LA +    G ++ G+LVK++F YH++ P+DL  YTD+S S V Q+ S+ + +  S L+  L  + AG +EV  L  ++++ RVFG I++T E +I+V+EW+   +ND++ADAV    M++EL G   +G  +  K   S +++ +I T+ D FG + +     +GD  ++ +    K   IN   L + C +D  L  ++  T+Q+L   L+
Sbjct:   12 DEESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLLFI-SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNI-STEQMLYTEADLEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVN-NPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVKRDFKYHLLAPSDLGKYTDMSMSVVTQRQSIPWGSSLSTLELLLDRIGAGCVEV--LEAERKL-RVFGCIELTVEQKIIVMEWQATHVNDVYADAVLACIMQSELGGTNLKGATKQTKSEDSRFRECLIETLQDTFGDNCVPKM-FEGD--LLPVTVSGKRAEINLETLAISCAEDDVLRQMLNTTVQKLHQTLV 681
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Fly
Match: IntS11 (gene:FBgn0039691 transcript:FBtr0085476)

HSP 1 Score: 329.717 bits (844), Expect = 4.585e-103
Identity = 182/453 (40.18%), Postives = 270/453 (59.60%), Query Frame = 1 
Query:  142 ELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEIN-GIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDD--LDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTET 1479
            ++KITPLGAGQ+VGRSC+LL   GK I+LDCG+H G       P     +         D ++ISHFHLDHCGALP++    G     YMTH TKAI   +L D  +V+       + +  + I + + K+  +  HQ + ++  ++  AY+AGHVLGAAMF I++    ++YTGD++   DRHL +A I   RP++LI+E+TY T I D +  RE  F   VH  V++GG+ LIP FALGRAQEL ++L+ YW +       PIY+A  L  K  + Y+ +I   N+++RK    ++N F F+HI   +  D   +D+    VV A+PGM+ +GLS ++F+ W  +  N VI+ GYCV+GT+  +IL    +V   N Q + +K +V+Y+SFSAH D +   + I+  +P +VMLVHGE  +M  L+  ++ E+ + E+Y      P N ET
Sbjct:    3 DIKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRAQELCILLETYWERMN--LKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF-VHRNMFDFKHI---KPFDKAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGTVGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAGKMKFLRSKIKDEF-NLETY-----MPANGET 443
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Fly
Match: Cpsf100 (gene:FBgn0027873 transcript:FBtr0085357)

HSP 1 Score: 133.65 bits (335), Expect = 6.489e-32
Identity = 101/378 (26.72%), Postives = 184/378 (48.68%), Query Frame = 1 
Query:  145 LKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILAD-YIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEIN----GIKFTAYHAGHVLGAAMF-MIEIAGVKILYTGDFSRQEDRHLMSAEIPP-ARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYW-SQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQE-ANQNPFVFQHISNLRAIDDLDD--NRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILS--APAE 1239
            +K+  +    +    C +L+    +I+LDCG       +      ++   +   D +L+SH    H GALP+L+ K GL    Y T     + +  + D Y+   N G     L++  D+  + +KI  + ++Q + +     GI  T  +AGH++G  ++ ++++    I+Y  DF+ +++RHL   E+    RP +LIT+A    +   +R  R+ +  T +   V   G  LI     GR  EL  +LD+ W ++   L +  +   + ++   I   ++ I  M++++ K  E A  NPF F+HI    ++ D+      P VV+AS   ++SG +R+LF  W  +A N +I+      GTLA +++   AP +
Sbjct:    5 IKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDAN---FIKELKRQVHTLDAVLLSHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGD--FDLFSLDDVDTAFEKITQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPGK 377
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Fly
Match: IntS9 (gene:FBgn0036570 transcript:FBtr0075495)

HSP 1 Score: 67.3958 bits (163), Expect = 3.224e-11
Identity = 79/381 (20.73%), Postives = 150/381 (39.37%), Query Frame = 1 
Query:  349 ALPHLLFKTGLRSRCYMTHATKAIYRYIL---ADYIRVSNNGSSAH-----------------------SLYNERDIINSLDKIDTIDFHQQIEINGIKF-TAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLI-TEATYGTHIHDKREEREARFTTLVHNI---VSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFV---------FQHISNLRAIDDLDDNR-PCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVML 1368
            ALP++   TG + + Y T  T  I R+ L    DYI VS    +A                        ++++ +D+  SL K+  + + ++++I G    T   +G+ LG++ +++  A  KI Y    S          +      +VLI T  T    ++      + +   L  N+   +   G  LIP +  G   +L   L +   ++  L ++P+++ S +A   ++        ++   + +     +PF           +H +++ +     D R PCVV      ++ G +    E W  +  N +I      E       + AP +         PL     Y       +YQQ ++ I+ELKPN +++
Sbjct:  110 ALPYITENTGFKGKVYATEPTLQIGRFFLEELVDYIEVSPKACTARLWKEKLHLLPSPLSEAFRAKKWRTIFSLKDVQGSLSKVTIMGYDEKLDILGAFIATPVSSGYCLGSSNWVLSTAHEKICYVSGSSTLTTHPRPINQSALKHADVLIMTGLTQAPTVNP-----DTKLGELCMNVALTIRNNGSALIPCYPSGVVYDLFECLTQNL-ENAGLNNVPMFFISPVADSSLAYSNILAEWLSSAKQNKVYLPDDPFPHAFYLRNNKLKHYNHVFSEGFSKDFRQPCVVFCGHPSLRFGDAVHFIEMWGNNPNNSIIFT----EPDFPYLQVLAPFQ---------PLAMKAFYCPIDTSLNYQQANKLIKELKPNVLVI 471
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Zebrafish
Match: cpsf3 (cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275])

HSP 1 Score: 815.453 bits (2105), Expect = 0.000e+0
Identity = 403/684 (58.92%), Postives = 512/684 (74.85%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGM-PQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCY----QDKKLESIVLGTIQRLFHCLMPV 2166
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LITE+TYGTHIH+KREEREARF   VH+IV+R GRCLIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RK    N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +K   GQR+ GILVKKNFSYHI++P+DL  YTDL+ S V+Q  ++ F  P  LL   L  + G++E + +  +K   +VF  I V  E  +VV+EW  NP+NDM+ADAVT + ++ +      + + PQ  K++ +++++ ++    DMFG+  +       D N + +  D K  FI+    TV+      +D  L  ++   +QRL+  + PV
Sbjct:   14 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSN-ISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCSQGQRVSGILVKKNFSYHILSPSDLSNYTDLAMSTVKQTQAIPFTGPFPLLLSQLRHLTGDVEEIEM-SEKSTVKVFNSITVIHENNLVVLEWFANPLNDMYADAVTTVVLEVQSNPKAQKALQPQEKKVDVNVFQNRLLKMFQDMFGEECVDFK----DKNCLAVNVDEKTAFIDLETRTVEYEEPNPEDDSLREMLELAVQRLYEAINPV 689
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Zebrafish
Match: ints11 (integrator complex subunit 11 [Source:NCBI gene;Acc:553648])

HSP 1 Score: 329.331 bits (843), Expect = 2.132e-103
Identity = 187/505 (37.03%), Postives = 296/505 (58.61%), Query Frame = 1 
Query:  142 ELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEING-IKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDD--LDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYE-------DDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLA-GQKPVNGQRIQGILVKKNFSYHIVTP 1611
            ++K+TPLGAGQ+VGRSC+L+   GK I+LDCG+H G       P            E  D ++ISHFHLDHCGALP++    G     YMTH TKAI   +L D+ +++ +     + +  + I + + K+  ++ HQ ++++  ++  AY+AGHVLGAAM  I++    ++YTGD++   DRHL +A I   RP++LI+E+TY T I D +  RE  F   VH  V RGG+ LIP FALGRAQEL ++L+ +W +   L++ PIY+++ L  K    Y+ +I   N+++RK     +N F F+HI   +A D    D+  P VV A+PGM+ +G S ++F+ W  + +N VI+ GYCV+GT+  +IL+   ++      +L +K  V+Y+SFSAH D +   + IR  +P +++LVHGE  +M  LK  +++E+        + E+  I ++ P     +       +MA + G L   +KP   + + G L+ K+ S  +V+P
Sbjct:    3 DIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERM-NLKA-PIYFSTGLTEKANHYYKLFITWTNQKIRK-TFVQRNMFEFKHI---KAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQGTVGHKILNGQKKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEAKKMEFLKDKIEQEFSISCFMPANGETTTI-VTNPSVPVDISLNLLKREMA-LGGPLPDAKKP---RTMHGTLIMKDNSLRLVSP 496
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Zebrafish
Match: ints11 (integrator complex subunit 11 [Source:NCBI gene;Acc:553648])

HSP 1 Score: 330.102 bits (845), Expect = 4.102e-103
Identity = 187/505 (37.03%), Postives = 296/505 (58.61%), Query Frame = 1 
Query:  142 ELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEING-IKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDD--LDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYE-------DDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLA-GQKPVNGQRIQGILVKKNFSYHIVTP 1611
            ++K+TPLGAGQ+VGRSC+L+   GK I+LDCG+H G       P            E  D ++ISHFHLDHCGALP++    G     YMTH TKAI   +L D+ +++ +     + +  + I + + K+  ++ HQ ++++  ++  AY+AGHVLGAAM  I++    ++YTGD++   DRHL +A I   RP++LI+E+TY T I D +  RE  F   VH  V RGG+ LIP FALGRAQEL ++L+ +W +   L++ PIY+++ L  K    Y+ +I   N+++RK     +N F F+HI   +A D    D+  P VV A+PGM+ +G S ++F+ W  + +N VI+ GYCV+GT+  +IL+   ++      +L +K  V+Y+SFSAH D +   + IR  +P +++LVHGE  +M  LK  +++E+        + E+  I ++ P     +       +MA + G L   +KP   + + G L+ K+ S  +V+P
Sbjct:    3 DIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERM-NLKA-PIYFSTGLTEKANHYYKLFITWTNQKIRKTF-VQRNMFEFKHI---KAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQGTVGHKILNGQKKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEAKKMEFLKDKIEQEFSISCFMPANGETTTI-VTNPSVPVDISLNLLKREMA-LGGPLPDAKKP---RTMHGTLIMKDNSLRLVSP 496
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Zebrafish
Match: ints11 (integrator complex subunit 11 [Source:NCBI gene;Acc:553648])

HSP 1 Score: 174.096 bits (440), Expect = 2.385e-49
Identity = 89/219 (40.64%), Postives = 134/219 (61.19%), Query Frame = 1 
Query:  142 ELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEING-IKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARF 783
            ++K+TPLGAGQ+VGRSC+L+   GK I+LDCG+H G       P            E  D ++ISHFHLDHCGALP++    G     YMTH TKAI   +L D+ +++ +     + +  + I + + K+  ++ HQ ++++  ++  AY+AGHVLGAAM  I++    ++YTGD++   DRHL +A I   RP++LI+E+TY T I D +  RE  F
Sbjct:    3 DIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDF 221
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Zebrafish
Match: cpsf2 (cleavage and polyadenylation specific factor 2 [Source:ZFIN;Acc:ZDB-GENE-040718-79])

HSP 1 Score: 141.354 bits (355), Expect = 3.322e-34
Identity = 101/374 (27.01%), Postives = 181/374 (48.40%), Query Frame = 1 
Query:  145 LKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEI----NGIKFTAYHAGHVLGAAMFMIEIAGVK-ILYTGDFSRQEDRHLMSAEIPP-ARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYW-SQHPELQSIPIYYASQLARKCISVYQTYIHAMNERV-RKQQEANQNPFVFQHISNLRAIDDLDD-NRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAE 1239
            +K+T L   QE    C LL+    + +LDCG                +  ++   L    H HL   GALP+ + K GL    Y T     + +  + D  +  +N +   +L+   D+ ++ DKI  + + Q + +    +G+  T   AGH++G  ++ I   G + I+Y  DF+ + + HL    +   +RP +LIT++   +++  +R++R+ +  T V   +   G  LI     GR  EL  +LD+ W ++   L    +   + ++   +   ++ +  M++++ R  ++   NPF F+H+S   ++ DL     P VV+ S   ++SG SRELF  WC DA+N VI+      GTLA+ ++  P E
Sbjct:    5 IKLTALSGVQEESALCYLLQVDEFRFLLDCGWDETFSMDIIDSLKRYVHQVDAVLLSHPDHVHL---GALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHN-TEDFTLFTLDDVDSAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYGVDFNHKREIHLNGCSLESLSRPSLLITDSFNASYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHSLSDLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTTPGTLARYLIDNPGE 374
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Xenopus
Match: cpsf3 (cleavage and polyadenylation specific factor 3 [Source:NCBI gene;Acc:448456])

HSP 1 Score: 798.119 bits (2060), Expect = 0.000e+0
Identity = 398/686 (58.02%), Postives = 504/686 (73.47%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSL----YKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQ----CYQDKKLESIVLGTIQRLFHCLMP 2163
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RKQ   N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEF+R LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +KP  GQRI GILVK+NF+YHI+ P+DL  YTDL+ S V QK ++ +  P +LL   L  + G++E + +  +K   RVF  + V  +  +V +EW  NP NDM+AD  T IT+  EL+  P        + ++ +    Y+  +   + D+FG   +       D++ + +  D K   ++    TV+      +D+ L  +V    QRL+  L P
Sbjct:   14 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRALIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFVRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVEIEVHNPRNTEAVTLNFRGEKLAKVMGLLADKKPEQGQRISGILVKRNFNYHILCPSDLSSYTDLAMSTVTQKQAIPYTGPFNLLSCQLQQLTGDVEEIEV-NEKDALRVFKAVTVVRDAGMVYLEWVANPANDMYAD--TVITVILELQSNPKANKAVATRASKEVDMDAYRKRLEMMLQDIFGDDCVNCE----DASSITVTVDGKSAILSMETRTVEYEEGIDEDETLREMVQQAAQRLYDALCP 689
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Xenopus
Match: cpsf3 (cleavage and polyadenylation specific factor 3 [Source:NCBI gene;Acc:448456])

HSP 1 Score: 786.563 bits (2030), Expect = 0.000e+0
Identity = 401/682 (58.80%), Postives = 506/682 (74.19%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQ----CYQDKKLESIVLGTIQRLFHCLMP 2163
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RKQ   N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEF+R LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +KP  GQRI GILVK+NF+YHI+ P+DL  YTDL+ S V QK ++ +  P +LL   L+L++G++E + +  +K   RVF  + V  +  +V +EW  NP NDM+AD  T IT+  EL+  P        K N+ L    ++  + D+FG   +       D++ + +  D K   ++    TV+      +D+ L  +V    QRL+  L P
Sbjct:   14 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRALIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFVRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVEIEVHNPRNTEAVTLNFRGEKLAKVMGLLADKKPEQGQRISGILVKRNFNYHILCPSDLSSYTDLAMSTVTQKQAIPYTGPFNLLSSFLSLLSGDVEEIEV-NEKDALRVFKAVTVVRDAGMVYLEWVANPANDMYAD--TVITVILELQSNP--------KANKGLC--CIMICLVDIFGDDCVNCE----DASSITVTVDGKSAILSMETRTVEYEEGIDEDETLREMVQQAAQRLYDALCP 675
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Xenopus
Match: cpsf3 (cleavage and polyadenylation specific factor 3 [Source:NCBI gene;Acc:448456])

HSP 1 Score: 783.097 bits (2021), Expect = 0.000e+0
Identity = 390/676 (57.69%), Postives = 496/676 (73.37%), Query Frame = 1 
Query:  160 LGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSL----YKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQ----CYQDKKLESIVLGTIQRLFHCLMP 2163
            +GAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RKQ   N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEF+R LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +KP  GQRI GILVK+NF+YHI+ P+DL  YTDL+ S V QK ++ +  P +LL   L  + G++E + +  +K   RVF  + V  +  +V +EW  NP NDM+AD  T IT+  EL+  P        + ++ +    Y+  +   + D+FG   +       D++ + +  D K   ++    TV+      +D+ L  +V    QRL+  L P
Sbjct:    1 IGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRALIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFVRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVEIEVHNPRNTEAVTLNFRGEKLAKVMGLLADKKPEQGQRISGILVKRNFNYHILCPSDLSSYTDLAMSTVTQKQAIPYTGPFNLLSCQLQQLTGDVEEIEV-NEKDALRVFKAVTVVRDAGMVYLEWVANPANDMYAD--TVITVILELQSNPKANKAVATRASKEVDMDAYRKRLEMMLQDIFGDDCVNCE----DASSITVTVDGKSAILSMETRTVEYEEGIDEDETLREMVQQAAQRLYDALCP 666
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Xenopus
Match: cpsf3 (cleavage and polyadenylation specific factor 3 [Source:NCBI gene;Acc:448456])

HSP 1 Score: 779.63 bits (2012), Expect = 0.000e+0
Identity = 387/681 (56.83%), Postives = 498/681 (73.13%), Query Frame = 1 
Query:  142 ELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLA---KMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQ----CYQDKKLESIVLGTIQRLFHCLMP 2163
            +L +   GAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RKQ   N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEF+R LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +KP  GQRI GILVK+NF+YHI+ P+DL  YTDL+ S V QK ++ +  P +LL   L  + G++E + +  +K   RVF  + V  +  +V +EW  NP NDM+AD V  + ++ +      +G+  +    +++   Y+  +   + D+FG   +       D++ + +  D K   ++    TV+      +D+ L  +V    QRL+  L P
Sbjct:    7 DLVLIHAGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRALIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFVRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVEIEVHNPRNTEAVTLNFRGEKLAKVMGLLADKKPEQGQRISGILVKRNFNYHILCPSDLSSYTDLAMSTVTQKQAIPYTGPFNLLSCQLQQLTGDVEEIEV-NEKDALRVFKAVTVVRDAGMVYLEWVANPANDMYADTVITVILELQSNPKANKGLCCIMICLEVDMDAYRKRLEMMLQDIFGDDCVNCE----DASSITVTVDGKSAILSMETRTVEYEEGIDEDETLREMVQQAAQRLYDALCP 679
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Xenopus
Match: cpsf3 (cleavage and polyadenylation specific factor 3 [Source:NCBI gene;Acc:448456])

HSP 1 Score: 745.732 bits (1924), Expect = 0.000e+0
Identity = 374/655 (57.10%), Postives = 475/655 (72.52%), Query Frame = 1 
Query:  223 ILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSL----YKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQ----CYQDKKLESIVLGTIQRLFHCLMP 2163
            +LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RKQ   N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEF+R LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +KP  GQRI GILVK+NF+YHI+ P+DL  YTDL+ S V QK ++ +  P +LL   L  + G++E + +  +K   RVF  + V  +  +V +EW  NP NDM+AD  T IT+  EL+  P        + ++ +    Y+  +   + D+FG   +       D++ + +  D K   ++    TV+      +D+ L  +V    QRL+  L P
Sbjct:    1 MLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRALIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFVRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVEIEVHNPRNTEAVTLNFRGEKLAKVMGLLADKKPEQGQRISGILVKRNFNYHILCPSDLSSYTDLAMSTVTQKQAIPYTGPFNLLSCQLQQLTGDVEEIEV-NEKDALRVFKAVTVVRDAGMVYLEWVANPANDMYAD--TVITVILELQSNPKANKAVATRASKEVDMDAYRKRLEMMLQDIFGDDCVNCE----DASSITVTVDGKSAILSMETRTVEYEEGIDEDETLREMVQQAAQRLYDALCP 645
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Mouse
Match: Cpsf3 (cleavage and polyadenylation specificity factor 3 [Source:MGI Symbol;Acc:MGI:1859328])

HSP 1 Score: 808.135 bits (2086), Expect = 0.000e+0
Identity = 401/685 (58.54%), Postives = 509/685 (74.31%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLA--KMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQ----DKKLESIVLGTIQRLFHCLMPV 2166
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RKQ   N NPFVF+HISNL+++D  DD  P VVMASPGM+Q+GLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +KP  GQR+ GILVK+NF+YHI++P DL  YTDL+ S V+Q  ++ +  P  LL + L  + G++E L ++ +K   +VF  I V  EP +VV+EW  NP NDM+AD VT + ++ +      +G  Q    K+   +Y   +   + D+FG+  ++      D +++ +  D K   IN     V+C +    D+ L  +V    QRL+  L PV
Sbjct:    7 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEELEIQ-EKPALKVFKSITVVQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEVMLQDIFGEDCVSVK----DDSVLSVTVDGKTANINLETRAVECEEGSEDDESLREMVELAAQRLYEALTPV 683
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Mouse
Match: Cpsf3 (cleavage and polyadenylation specificity factor 3 [Source:MGI Symbol;Acc:MGI:1859328])

HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 333/511 (65.17%), Postives = 406/511 (79.45%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVG--QLAGQKPVNGQRIQG---ILVKKNFSYHIVTPNDLPIYTDLSTS 1647
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RKQ   N NPFVF+HISNL+++D  DD  P VVMASPGM+Q+GLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK+ G    A  +  N  R  G    L+K+     ++T   LP+ + ++ +
Sbjct:    7 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVQGSRSWAFWQTRNQNRASGSLEFLLKET----LITTYSLPVTSPITLT 510
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Mouse
Match: Cpsf3 (cleavage and polyadenylation specificity factor 3 [Source:MGI Symbol;Acc:MGI:1859328])

HSP 1 Score: 332.028 bits (850), Expect = 1.480e-108
Identity = 165/238 (69.33%), Postives = 200/238 (84.03%), Query Frame = 1 
Query:  163 GAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLIL 876
            GAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LIL
Sbjct:   12 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLIL 247
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Mouse
Match: Ints11 (integrator complex subunit 11 [Source:MGI Symbol;Acc:MGI:1919207])

HSP 1 Score: 333.569 bits (854), Expect = 3.036e-104
Identity = 177/454 (38.99%), Postives = 268/454 (59.03%), Query Frame = 1 
Query:  142 ELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEING-IKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDL--DDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETV 1482
            E+++TPLGAGQ+VGRSC+L+   GK ++LDCG+H G       P            +  D ++ISHFHLDHCGALP+     G     YMTH T+AI   +L DY +++ +     + +  + I + + K+  +  HQ ++++  ++  AY+AGHVLGAAMF I++    ++YTGD++   DRHL +A I   RP +LITE+TY T I D +  RE  F   VH  V RGG+ LIP FALGRAQEL ++L+ +W +      +PIY+++ L  K    Y+ +I   N+++RK     +N F F+HI   +A D    D+  P VV A+PGM+ +G S ++F  W  + +N VI+ GYCV+GT+  +ILS   ++     Q L +K  V+Y+SFSAH D +   + + + +P  V+LVHGE  +M  L+  +++E      +R+    P N ETV
Sbjct:    3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFSTGLTEKANHYYKLFITWTNQKIRK-TFVQRNMFEFKHI---KAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLRQKIEQE------FRVSCYMPANGETV 444
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Mouse
Match: Cpsf3 (cleavage and polyadenylation specificity factor 3 [Source:MGI Symbol;Acc:MGI:1859328])

HSP 1 Score: 315.079 bits (806), Expect = 4.556e-102
Identity = 149/207 (71.98%), Postives = 173/207 (83.57%), Query Frame = 1 
Query:  322 SHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLA 942
            SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA
Sbjct:   21 SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLA 226
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. UniProt/SwissProt
Match: sp|P79101|CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus OX=9913 GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 813.527 bits (2100), Expect = 0.000e+0
Identity = 405/685 (59.12%), Postives = 511/685 (74.60%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLA--KMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQ----DKKLESIVLGTIQRLFHCLMPV 2166
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RKQ   N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +KP  GQR+ GILVK+NF+YHI++P DL  YTDL+ S V+Q  ++ +  P +LL + L  + G++E L ++ +K   +VF  I V  EP +VV+EW  NP NDM+AD VT + ++ +      +G  Q    K+   +Y   +   + D+FG+  ++      D +I+ +  D K   IN    TV+C +    D+ L  +V    QRL+  L PV
Sbjct:    7 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEELEIQ-EKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVK----DGSILSVTVDGKTANINLETRTVECEEGSEDDESLREMVELAAQRLYEALTPV 683
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. UniProt/SwissProt
Match: sp|Q9UKF6|CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens OX=9606 GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 811.987 bits (2096), Expect = 0.000e+0
Identity = 404/685 (58.98%), Postives = 511/685 (74.60%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLA--KMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQ----DKKLESIVLGTIQRLFHCLMPV 2166
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RKQ   N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +KP  GQR+ GILVK+NF+YHI++P DL  YTDL+ S V+Q  ++ +  P +LL + L  + G++E L ++ +K   +VF  I V  EP +VV+EW  NP NDM+AD VT + ++ +      +G  Q    K+   +Y   +   + D+FG+  ++      D +I+ +  D K   +N    TV+C +    D+ L  +V    QRL+  L PV
Sbjct:    7 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQ-EKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVK----DDSILSVTVDGKTANLNLETRTVECEEGSEDDESLREMVELAAQRLYEALTPV 683
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. UniProt/SwissProt
Match: sp|Q9QXK7|CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus OX=10090 GN=Cpsf3 PE=1 SV=2)

HSP 1 Score: 808.135 bits (2086), Expect = 0.000e+0
Identity = 401/685 (58.54%), Postives = 509/685 (74.31%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLA--KMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQ----DKKLESIVLGTIQRLFHCLMPV 2166
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   VH+IV+RGGR LIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RKQ   N NPFVF+HISNL+++D  DD  P VVMASPGM+Q+GLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +KP  GQR+ GILVK+NF+YHI++P DL  YTDL+ S V+Q  ++ +  P  LL + L  + G++E L ++ +K   +VF  I V  EP +VV+EW  NP NDM+AD VT + ++ +      +G  Q    K+   +Y   +   + D+FG+  ++      D +++ +  D K   IN     V+C +    D+ L  +V    QRL+  L PV
Sbjct:    7 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEELEIQ-EKPALKVFKSITVVQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEVMLQDIFGEDCVSVK----DDSVLSVTVDGKTANINLETRAVECEEGSEDDESLREMVELAAQRLYEALTPV 683
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. UniProt/SwissProt
Match: sp|Q9VE51|CPSF3_DROME (Cleavage and polyadenylation specificity factor 73 OS=Drosophila melanogaster OX=7227 GN=Cpsf73 PE=1 SV=2)

HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0
Identity = 393/679 (57.88%), Postives = 512/679 (75.41%), Query Frame = 1 
Query:  127 EEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLV-AGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCLM 2160
            +EESD L+I PLGAGQEVGRSC++L+FKGKKI+LDCGIHPGL G + LP++D+I+  E   L + SHFHLDHCGALP  L KT  + RC+MTHATKAIYR++L+DYI++SN  S+   LY E D+  S++KI+TI+FH++ ++ G++F AY AGHVLGAAMFMIEIAG+KILYTGDFSRQEDRHLM+AE+PP +P+VLITE+TYGTHIH+KRE+RE RFT+LV  IV +GGRCLIP FALGRAQEL+LILDE+WSQ+P+L  IPIYYAS LA+KC++VYQTYI+AMN+R+R+Q   N NPFVF+HISNL+ ID  +D  PCV+MASPGMMQSGLSRELFE+WC D +NGVIIAGYCVEGTLAK +LS P E+ T++GQ LPL  SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK ALQREYE D S  I    P NT  V   FRGEK AK++G LA +    G ++ G+LVK++F YH++ P+DL  YTD+S S V Q+ S+ + +  S L+  L  + AG +EV  L  ++++ RVFG I++T E +I+V+EW+   +ND++ADAV    M++EL G   +G  +  K   S +++ +I T+ D FG + +     +GD  ++ +    K   IN   L + C +D  L  ++  T+Q+L   L+
Sbjct:   12 DEESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLLFI-SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNI-STEQMLYTEADLEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVN-NPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVKRDFKYHLLAPSDLGKYTDMSMSVVTQRQSIPWGSSLSTLELLLDRIGAGCVEV--LEAERKL-RVFGCIELTVEQKIIVMEWQATHVNDVYADAVLACIMQSELGGTNLKGATKQTKSEDSRFRECLIETLQDTFGDNCVPKM-FEGD--LLPVTVSGKRAEINLETLAISCAEDDVLRQMLNTTVQKLHQTLV 681
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. UniProt/SwissProt
Match: sp|Q86A79|CPSF3_DICDI (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum OX=44689 GN=cpsf3 PE=3 SV=1)

HSP 1 Score: 619.002 bits (1595), Expect = 0.000e+0
Identity = 300/597 (50.25%), Postives = 420/597 (70.35%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXX-XXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNP-----PSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRI-VVIEWKTNPINDMFADAVTCITMKAELEGL 1899
            E+ D L+ITP+G+G EVGRSCVLLK+KGKK++ DCG+HP   G   LPF D I+    + DL+L+SHFHLDH  A+P+ + KT  + R +MTH TKAIY  +L+DY++VSN       L+++ D+  SL+KI+ + + Q++E NGIK T ++AGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLM AE PP + +VLI E+TYG  +H+ R ERE RFT+ VH +V R G+CLIP FALGRAQEL+LILDEYW  +P+L  +PIYYAS LA+KC+ VY+TYI+ MN+RVR Q + + NPF F+HI N++ I+  DD  PCV MASPGM+QSGLSR+LFE WC D RNG++I GY VEGTLAK I+S PAE+  ++  ++PL  +V Y+SFSAH+D+ QTSEFI+E++P HV+LVHG+ NEM +L+ +L  +++      I++ TP N  +V  +FR EK+AK +G +    P     IQGILV K+F++HI++ +D+  YT+L T+ ++QKL++ F         +L Q +  ++           +K    ++  I + +   + +++EW +N +NDM  D++  +  + EL  L
Sbjct:   31 EDDDILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNGKCLIPVFALGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTYINMMNDRVRAQFDVS-NPFEFKHIKNIKGIESFDDRGPCVFMASPGMLQSGLSRQLFERWCSDKRNGIVIPGYSVEGTLAKHIMSEPAEITRLDNVNVPLNLTVSYVSFSAHSDFLQTSEFIQEIQPPHVVLVHGDANEMSRLRQSLVAKFK-----TINVLTPKNAMSVALEFRPEKVAKTLGSIITNPPKQNDIIQGILVTKDFTHHILSASDIHNYTNLKTNIIKQKLTLPFAQTYHILISTLEQIYEQIIESTESTGGGGNEKPTITIYNEIKLIYNIGVSIILEWNSNTVNDMICDSIIALISQIELNPL 621
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. TrEMBL
Match: A0A023ZSQ4 (Cleavage and polyadenylation specificity factor subunit 3 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 955.666 bits (2469), Expect = 0.000e+0
Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 1 
Query:  397 MTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQI 1764
            MTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQI
Sbjct:    1 MTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQI 456
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. TrEMBL
Match: A0A4Z2DSF3 (Cleavage and polyadenylation specificity factor subunit 3 OS=Schistosoma japonicum OX=6182 GN=EWB00_008867 PE=4 SV=1)

HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 453/677 (66.91%), Postives = 555/677 (81.98%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGS-SAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCL 2157
            EESD+L I PLGAGQEVGRSC+LL FKGKKIILDCGIHPGLR  E LPF+D I DI+ TDL+LISHFHLDHCG LPHLL KTG + +CYMTHATKAIYRY+LAD++RVSN+G     +LY++RDI+ SLD I+TIDFHQ++E+NGIKF+A+HAGHVLGAAMF+IEIAGVKILYTGDFSRQEDRHLM AE+PP RP+VLITEATYG HIHDKREEREARFT+LVH+IV+RGGRCLIPAFALGRAQELMLILDEYW  HPEL  IPIYYASQLARKC++VYQTYI+AMNER+R Q  AN NPF F+HISNL++I+  DD+ PCVVMASPGMMQSGLSRELFENWC D RNGVIIAGYCVEGTLAKQILS PAEVPTM+GQ LPLKCSVDYISFSAHTDYQQTS FIRELKP++V+LVHGE+NEML+L GALQREYEDDE+ R++I TP N   V  +FRGEK+AKI+G LA   P  GQ I G+LVKKNF+YHI+TP +LP YT+L+T+ V Q +S+ F    +LL+FHL L+AG++E++  + D   +RVF  I++TW P+ + +EW++NP +DM+ADAV  + ++A ++G+P +G+P L + N+  ++ ++  T+ D FG   +   +++ D+N V +  DS    IN   L+V C  ++KLE I+   + RL HC+
Sbjct:    9 EESDKLTIMPLGAGQEVGRSCILLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDIQSTDLVLISHFHLDHCGGLPHLLLKTGAKLKCYMTHATKAIYRYLLADFVRVSNSGGLPDQALYSDRDIVASLDHIETIDFHQELEVNGIKFSAFHAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMCAEVPPIRPDVLITEATYGIHIHDKREEREARFTSLVHDIVTRGGRCLIPAFALGRAQELMLILDEYWENHPELHDIPIYYASQLARKCMAVYQTYIYAMNERIRNQL-ANNNPFCFRHISNLKSIEHFDDSGPCVVMASPGMMQSGLSRELFENWCTDKRNGVIIAGYCVEGTLAKQILSLPAEVPTMSGQMLPLKCSVDYISFSAHTDYQQTSAFIRELKPSYVVLVHGEQNEMLRLCGALQREYEDDETCRMEIFTPKNCVPVNLRFRGEKVAKILGSLAHSAPKEGQTISGVLVKKNFAYHILTPGELPTYTELATTVVNQVISIPFTGSANLLKFHLALLAGSVELISQKSDNVQYRVFDAINITWRPQQITMEWQSNPTSDMYADAVQNVILRAAMQGMPPRGLPHLIEPNKEQFRSALEVTLQDAFGIDCLEEEKIEPDANHVIVHIDSHVAEINLCDLSVTCKTNQKLEHILQVMVNRLNHCI 684
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. TrEMBL
Match: A0A3Q0KIM9 (Cleavage and polyadenylation specificity factor-related OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 943.34 bits (2437), Expect = 0.000e+0
Identity = 454/677 (67.06%), Postives = 549/677 (81.09%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSL-YNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCL 2157
            EESD+L I PLGAGQEVGRSC+LL FKGKKIILDCGIHPGLR  E LPF+D I DI+ TDLILISHFHLDHCG LPHLL KTG +S+CYMTHATKAIYRY+LAD++RVSN+G     L Y++RDI+ SLD IDTIDFHQ++E+NGIKF+AYHAGHVLGAAMF+IEIAGVKILYTGDFSRQEDRHLM AEIPP RP+VLITEATYG HIHDKREEREARFT+LVH+IV+RGGRCLIPAFALGRAQELMLILDEYW  HPEL  IPIYYASQLARKC++VYQTYI+AMNER+R Q  AN NPF F+HISNL++I+  DD+ PCVVMASPGMMQSGLSRELFENWC D RNGVIIAGYCVEGTLAKQILS P EVPTM+GQ LPLKCSVDYISFSAHTDYQQTS FIRELKP++V+LVHGE+NEML+L GALQREYEDDE+ R++I TP N   V  +FRGEK+AKI+G LA   P  GQ I G+LVKKNF+YHI+TP +LP YT+L+T+ V Q +S+ F    +LL+FHL L+AG++E +  + D   +RVF  I++TW P+ + +EW++NP +DM+ADAV  + ++A ++G+P +G+P L + N+  ++ ++   + D FG   +    +  D+N V +  DS    +N   L+V C  + +LE I+   + RL HC+
Sbjct:    8 EESDKLTIMPLGAGQEVGRSCILLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDIQTTDLILISHFHLDHCGGLPHLLLKTGAKSKCYMTHATKAIYRYLLADFVRVSNSGGLPDQLLYSDRDIVASLDHIDTIDFHQELEVNGIKFSAYHAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMCAEIPPIRPDVLITEATYGIHIHDKREEREARFTSLVHDIVTRGGRCLIPAFALGRAQELMLILDEYWDNHPELHDIPIYYASQLARKCMAVYQTYIYAMNERIRNQL-ANNNPFCFRHISNLKSIEHFDDSGPCVVMASPGMMQSGLSRELFENWCTDKRNGVIIAGYCVEGTLAKQILSLPTEVPTMSGQMLPLKCSVDYISFSAHTDYQQTSAFIRELKPSYVVLVHGEQNEMLRLCGALQREYEDDETCRLEIFTPKNCVPVNLRFRGEKVAKILGSLAHSAPKEGQTISGVLVKKNFAYHILTPGELPTYTELATTVVNQVISIPFTGSANLLKFHLALLAGSVETVSQKSDNVQYRVFDAINITWRPQQITMEWQSNPTSDMYADAVQNVILRAAMQGMPPRGLPHLIEPNKEQFRSALEVALQDAFGIDCLEEEIIKPDANHVIVHVDSHVAEVNLCDLSVSCKTNPRLEHILQVMVSRLNHCI 683
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. TrEMBL
Match: A0A4S2LLZ4 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007609 PE=4 SV=1)

HSP 1 Score: 942.184 bits (2434), Expect = 0.000e+0
Identity = 450/685 (65.69%), Postives = 554/685 (80.88%), Query Frame = 1 
Query:  121 FDE--EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNN-GSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCLMPV 2166
            F+E  ++SD L + PLGAGQEVGRSC+LL FKGKKI+LDCGIHPGLR  E LPF+D I D+   DLILISHFHLDHCG LP+LL KTG+R++CYMTHATKAIYRY+LAD++RVSN+ G    SLY +RDII SLD+IDT+DFHQ++E+NGIKFTA+HAGHVLGAAMF+IEIAGVK+LYTGDFSRQEDRHLM AEIP  RP+VLITEATYG HIHDKRE+REARFT LVH+IV RGGRCLIPAFALGRAQELMLILDEYW+ HPEL  IPIYYASQLARKC++VYQTYIHAMNE++R Q  AN NPF F+HISNL++I+  DD+ PCVVMASPGMMQSG+SRELFENWC D RNGVIIAGYCVEGTLAKQILS PAE+PTM+GQ+LPLKCSVDYISFSAHTDYQQTS FIRELKPN+V+LVHGE+NEML+L GALQREYEDD++  +++ TP N   V  +FRGEK+AK++G LA   P N Q I G+LVKKNF+YHI+TP +LP YT+L+T+ V Q +S+ F    +LL+FHL+L+AG +EV+L + +   FRVF  I+VTW P+ V +EWK+NP NDM+ADAV  + ++A ++G+P +G+P L + ++     ++  T+ D FG   +   EV+ D+  + +  DS    ++   L+V C  + KLE I+   +QR+ HC+  V
Sbjct:   20 FNENFDDSDRLTVMPLGAGQEVGRSCILLTFKGKKILLDCGIHPGLRNKESLPFIDAIPDLHTADLILISHFHLDHCGGLPYLLLKTGVRAKCYMTHATKAIYRYLLADFVRVSNSSGVPDQSLYTDRDIIASLDRIDTLDFHQELEVNGIKFTAFHAGHVLGAAMFLIEIAGVKVLYTGDFSRQEDRHLMCAEIPHVRPDVLITEATYGIHIHDKREDREARFTRLVHDIVGRGGRCLIPAFALGRAQELMLILDEYWANHPELHDIPIYYASQLARKCMAVYQTYIHAMNEKIRNQL-ANNNPFCFRHISNLKSIEHFDDSGPCVVMASPGMMQSGMSRELFENWCTDRRNGVIIAGYCVEGTLAKQILSLPAEIPTMSGQTLPLKCSVDYISFSAHTDYQQTSAFIRELKPNYVILVHGEQNEMLRLAGALQREYEDDDTCCLELFTPKNCVPVNLRFRGEKVAKVLGSLARNPPKNNQSISGVLVKKNFAYHILTPEELPTYTELATTTVNQLISIPFTGSATLLRFHLSLLAGTVEVVLHKSEIVQFRVFDSINVTWRPQQVNLEWKSNPTNDMYADAVQNVVLRAAMQGMPPRGLPHLTEPSKKQLHMALEVTLQDAFGMDCLEVEEVEPDAKSILVRVDSHVAEVDLTDLSVSCPTNSKLEHIIRVMVQRVSHCISAV 703
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. TrEMBL
Match: A0A267EYG9 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig013905g1 PE=4 SV=1)

HSP 1 Score: 933.71 bits (2412), Expect = 0.000e+0
Identity = 438/679 (64.51%), Postives = 550/679 (81.00%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIV-KIAFDSKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCLMP 2163
            +ES+EL ITPLG+GQEVGRSC++LKFKGK ++LDCGIHPGLR +E LPF+D I+  +   L++ SHFHLDHCG LP+LL KT  R R +MTHATKAIYR++L D+++VSNN S A +LY ++DI +S+++I+TIDFHQ++E+NGIKFTAYHAGHVLGAAMF+IEIAGV+ILYTGDFSRQEDRHLMSAE+PP RP+VLITE+TYGTHIHD+REEREARF  LVH+IV+RGGRCLIPAFALGRAQELMLILDEYWS HPEL  IPIYYASQLA+KC++VYQTYIHAMNE VR +   N NPFVF+HISNLR +D   D+ PCV+MASPGMMQ+GLSRELFENWC D RNGVIIAGYCVEGTLAKQILS P EV TM+GQ+LPLKCSVDY+SFSAHTDYQQTSEFIR+L+P H++LVHGE+NEML+L+ AL R+YED+  YR+DI TP N E+V   FRGEK AK+VG LA   P  GQ + GIL+KKNFSYH+V   DLP YTDL+TS+V Q++++ F  PPSLL FHL +VAG++E +  +GD  ++RVF  + VTWEPR V+IEW++NP++DMFADAV  + +KAELEG+P Q +P  A+ + + ++ +++ T+S+MFG  S+        S +  ++   ++++ ++   LT  C +D  L+ +V   I RL   LMP
Sbjct:    5 DESNELVITPLGSGQEVGRSCIMLKFKGKLVVLDCGIHPGLRSNESLPFIDNIEHEKVDVLLV-SHFHLDHCGGLPYLLSKTPFRGRVFMTHATKAIYRWLLCDFVKVSNNSSEA-ALYADQDIQSSMERIETIDFHQELEVNGIKFTAYHAGHVLGAAMFLIEIAGVRILYTGDFSRQEDRHLMSAELPPCRPDVLITESTYGTHIHDRREEREARFVGLVHDIVARGGRCLIPAFALGRAQELMLILDEYWSLHPELHRIPIYYASQLAKKCMAVYQTYIHAMNESVRNKI-VNNNPFVFKHISNLRNVDIYVDSGPCVIMASPGMMQNGLSRELFENWCTDKRNGVIIAGYCVEGTLAKQILSHPQEVTTMSGQTLPLKCSVDYVSFSAHTDYQQTSEFIRDLRPAHIVLVHGEQNEMLRLRSALLRQYEDEPDYRLDIFTPKNCESVSLHFRGEKTAKVVGSLAKSAPTEGQPLSGILMKKNFSYHLVHETDLPTYTDLATSEVTQRMAVHFSMPPSLLYFHLAVVAGSVETVRQKGDCHVYRVFQCVTVTWEPRQVLIEWQSNPVSDMFADAVQTVILKAELEGMPWQSVPAPARQDSTAFRTALLETLSEMFGPDSVQGRPDPRKSGLTFQLVVRNRQVEVDTGRLTATCEEDAPLQQLVRTVINRLRQVLMP 680
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Cavefish
Match: cpsf3 (cleavage and polyadenylation specific factor 3 [Source:NCBI gene;Acc:103041693])

HSP 1 Score: 809.29 bits (2089), Expect = 0.000e+0
Identity = 401/684 (58.63%), Postives = 510/684 (74.56%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQL-AKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQ----DKKLESIVLGTIQRLFHCLMPV 2166
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LITE+TYGTHIH+KREEREARF   VH+IV+R GRCLIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RK    N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ L LK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +K   GQR+ GILVK+NFSYHI+TP+DL  YTDL+ S V+Q  ++ F  P +LL   L  +AGN+E  +   +K   R+F  I +  +  +V++EW +NP+NDM+ADAVT + ++ +      + +     K++  ++ + +     DMFG+  +       D N V +  D K   IN    TV+  +    D+ L+ +V  ++QRL+  + PV
Sbjct:   14 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCAQGQRVSGILVKRNFSYHILTPSDLSNYTDLAMSTVKQSQAIPFSGPFNLLHNQLCYLAGNVEE-VDTAEKTTLRIFDSITLVHDGNMVLLEWVSNPLNDMYADAVTTVVLEVQSNPKAQKAIKHSEKKVDPDVFHNRLQIMFQDMFGEECVDFK----DKNTVTVTVDGKTANINLETRTVEYEEGSADDESLKEMVELSVQRLYDAINPV 689
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Cavefish
Match: cpsf3 (cleavage and polyadenylation specific factor 3 [Source:NCBI gene;Acc:103041693])

HSP 1 Score: 769.229 bits (1985), Expect = 0.000e+0
Identity = 387/684 (56.58%), Postives = 491/684 (71.78%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQL-AKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQ----DKKLESIVLGTIQRLFHCLMPV 2166
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LITE+TYGTHIH+KREEREARF   VH+IV+R GRCLIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RK    N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ L LK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +K   GQR+ GILVK+NFSYHI+TP+DL                                 + N+E  +   +K   R+F  I +  +  +V++EW +NP+NDM+ADAVT + ++ +      + +     K++  ++ + +     DMFG+  +       D N V +  D K   IN    TV+  +    D+ L+ +V  ++QRL+  + PV
Sbjct:   14 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCAQGQRVSGILVKRNFSYHILTPSDL---------------------------------SRNVEE-VDTAEKTTLRIFDSITLVHDGNMVLLEWVSNPLNDMYADAVTTVVLEVQSNPKAQKAIKHSEKKVDPDVFHNRLQIMFQDMFGEECVDFK----DKNTVTVTVDGKTANINLETRTVEYEEGSADDESLKEMVELSVQRLYDAINPV 656
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Cavefish
Match: cpsf3 (cleavage and polyadenylation specific factor 3 [Source:NCBI gene;Acc:103041693])

HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 361/617 (58.51%), Postives = 452/617 (73.26%), Query Frame = 1 
Query:  328 FHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQ----DKKLESIVLGTIQRLFHCLMPV 2166
            FHLDHCGALP  L KT  + R +MTHATKAIYR++L+DY++VSN  S+   LY E D+  S+DKI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LITE+TYGTHIH+KREEREARF   VH+IV+R GRCLIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LA+KC++VYQTY++AMN+++RK    N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+GQ L LK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA +K   GQR+ GILVK+NFSYHI+TP+DL  YTDL+ S V+Q  ++ F  P +LL   L  +AGN+E  +   +K   R+F  I +  +  +V++EW +NP+NDM+ADAVT +        L  Q  P+  K+  + + +       DMFG+  +       D N V +  D K   IN    TV+  +    D+ L+ +V  ++QRL+  + PV
Sbjct:   25 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSN-ISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAININ-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCAQGQRVSGILVKRNFSYHILTPSDLSNYTDLAMSTVKQSQAIPFSGPFNLLHNQLCYLAGNVEE-VDTAEKTTLRIFDSITLVHDGNMVLLEWVSNPLNDMYADAVTTVV-------LEVQSNPKAQKVKCNEWIN------IDMFGEECVDFK----DKNTVTVTVDGKTANINLETRTVEYEEGSADDESLKEMVELSVQRLYDAINPV 621
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Cavefish
Match: ints11 (integrator complex subunit 11 [Source:NCBI gene;Acc:103024185])

HSP 1 Score: 331.643 bits (849), Expect = 1.013e-103
Identity = 192/536 (35.82%), Postives = 302/536 (56.34%), Query Frame = 1 
Query:  142 ELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEING-IKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDD--LDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTET------------VQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPS 1692
            ++K+TPLGAGQ+VGRSC+L+   GK I+LDCG+H G       P            E  D ++ISHFHLDHCGALP++    G     YMTH TKAI   +L D+ +++ +     + +  + I + + K+  ++ HQ ++++  ++  AY+AGHVLGAAM +I++    ++YTGD++   DRHL +A I   RP++LI+E+TY T I D +  RE  F   VH  + RGG+ LIP FALGRAQEL ++L+ +W +   L++ PIY+++ L  K    Y+ +I   N+++RK     +N F F+HI   +A D    D+  P VV A+PGM+ +G S ++F+ W  + +N VI+ GYCV+GT+  +IL+   ++      +L +K  V+Y+SFSAH D +   + IR  +P +++LVHGE  +M  LK  +++E+       I    P N ET            +       +MA + G L    P   + + G L+ K+ S  +V+P        LS   +R    +  ++P S
Sbjct:    3 DIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYITQNGRLTEFLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVLIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHETIERGGKVLIPVFALGRAQELCILLETFWERM-NLKA-PIYFSTGLTEKANHYYKLFITWTNQKIRKTF-VQRNMFEFKHI---KAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQGTVGHKILNGQKKLEMEGRATLEVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEAKKMEFLKDKIEQEFS------ISCYMPANGETTTVTTNPSVPVDISLPLLKREMA-LGGPLP--DPKKPRTMHGTLIMKDNSLKLVSPEQALKELGLSEHQLRFTCRVHLQDPHS 523
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Cavefish
Match: cpsf2 (cleavage and polyadenylation specific factor 2 [Source:NCBI gene;Acc:103042426])

HSP 1 Score: 139.043 bits (349), Expect = 1.304e-33
Identity = 100/374 (26.74%), Postives = 183/374 (48.93%), Query Frame = 1 
Query:  145 LKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEI----NGIKFTAYHAGHVLGAAMFMIEIAG-VKILYTGDFSRQEDRHLMSAEIPP-ARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYW-SQHPELQSIPIYYASQLARKCISVYQTYIHAMNERV-RKQQEANQNPFVFQHISNLRAIDDLDD-NRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAE 1239
            +K+T +   QE    C LL+    + +LDCG               +   + + D +L+SH    H GALP+ + K GL    Y T     + +  + D  +  +N +   SL+   D+ ++ DKI  + + Q + +    +G+  T   AGH++G  ++ I   G  +I+Y  DF+ + + HL    +   +RP +LIT++   T++  +R++R+ +  T +   +   G  LI     GR  EL  +LD+ W ++   L    +   + ++   +   ++ +  M++++ R  ++   NPF F+H+S    + DL     P VV+ S   ++SG SRELF  WC D++N +I+      GTLA+ ++  P E
Sbjct:    5 IKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMD---IIDAMKRYVHQVDAVLLSHPDPLHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHN-TEDFSLFTLDDVDSAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYAVDFNHKREIHLNGCSLESISRPSLLITDSFNATYVQPRRKQRDEQLLTNIMETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLTLLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLCSQPDLESGFSRELFIQWCQDSKNSIILTYRTTPGTLARYLIDNPGE 374
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Sea Lamprey
Match: cpsf3 (cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275])

HSP 1 Score: 730.709 bits (1885), Expect = 0.000e+0
Identity = 355/535 (66.36%), Postives = 434/535 (81.12%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLIL---DEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAG 1725
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++DIID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+D+++VSN  S+   LY E+D+ +S+DKI+TI+FH+  E+ G+KF  Y+AGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LI E+TYGTHIH+KREEREARF   V +IV+RGGRCLIP FALGRAQEL+LIL   DEYW  HPEL  IPIYYAS LA+KC++VYQTY+HAMN+++RKQ   + NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I+S P E+ TM+G  LPLK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK A+ REYED++   +++  P NTE V   FRGEK+AK++G LA +K   GQRI GILVK+NF+YHI+ PNDL  YT+L+ S V Q  ++ +  P +LL  HL  +AG
Sbjct:   13 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLDGMDALPYIDIIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDFVKVSNI-SADDMLYTEQDLEDSMDKIETINFHEVKEVAGVKFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVQDIVNRGGRCLIPVFALGRAQELLLILVHADEYWGNHPELHDIPIYYASSLAKKCMAVYQTYVHAMNDKIRKQISIS-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIMTMSGLKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVVLVHGEQNEMGRLKAAIIREYEDNKEVSMEVHNPRNTEAVALHFRGEKLAKVMGMLAVRKAEQGQRISGILVKRNFNYHILAPNDLSNYTELTMSHVTQCQAVPYTGPLTLLAHHLQTLAG 544
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006433.1 (pep scaffold:Pmarinus_7.0:GL482897:11374:16985:1 gene:ENSPMAG00000005816.1 transcript:ENSPMAT00000006433.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 137.117 bits (344), Expect = 1.492e-37
Identity = 70/174 (40.23%), Postives = 106/174 (60.92%), Query Frame = 1 
Query:  142 ELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEI-NGIKFTAYHAGHVLGAAMFMIEIAGVKILYT 648
            E+K+TPLGAGQ+VGRSC+L+  +GK I+LDCG+H G       P            +  D ++ISHFHLDHCGALP++    G     YMTH TKAI   +L DY +++ +     + +  + I + + K+  ++ HQ +++ N ++  AY+AGHVLGAAMF + +    ++YT
Sbjct:    3 EIKVTPLGAGQDVGRSCILVSIRGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKDCMKKVVAVNLHQSVQVDNELEIKAYYAGHVLGAAMFEMRVGPESVVYT 176
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006932.1 (pep scaffold:Pmarinus_7.0:GL476370:652825:673040:-1 gene:ENSPMAG00000006205.1 transcript:ENSPMAT00000006932.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 135.191 bits (339), Expect = 4.796e-33
Identity = 101/375 (26.93%), Postives = 183/375 (48.80%), Query Frame = 1 
Query:  145 LKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGS--ECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEI----NGIKFTAYHAGHVLGAAMFMIEIAGVK-ILYTGDFSRQEDRHLMSAEIPP-ARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYW-SQHPELQSIPIYYASQLARKCISVYQTYIHAMNERV-RKQQEANQNPFVFQHISNLRAIDDLDD-NRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPA 1236
            +K+T L   Q+ G  C LL+    + +LDCG     +    E L        I + D +L+SH    H GALP  + K GL    Y T     + +  + D  +  +N S   +L+   D+  + DKI  + ++Q + +    +G+  T   AGH++G  ++ I   G + I+Y  D++ + + HL    +    RP +LIT++   T++  +R++R+ +  T +   +   G  L+     GR  EL  +LD+ W ++   L +  +   + ++   +   ++ +  M++++ R  ++   NPF F+H+S   ++ DL     P VV+ S   ++ G SRELF  WC D R+ VI     + GTLA+ ++  P 
Sbjct:    5 IKLTALSGVQDEGALCYLLQVDEFRFLLDCGWDENFKADFVEIL-----KRHIHQIDAVLLSHPDTPHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHN-SEDFNLFTLDDVDAAFDKIQQLKYNQIVYLKGKGHGLSITPLPAGHMIGGTVWKIVKDGEEEIIYAVDYNHKREIHLNGCALETVTRPSLLITDSLNATYVQARRKQRDEQLLTNILETLRGDGNVLLAVDTAGRVLELAQLLDQIWRTKDAGLGAYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHSLADLAKVPSPKVVLCSQPDLECGFSRELFIQWCSDPRHCVIFTARTMPGTLARTLIEKPG 373
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Sea Lamprey
Match: ints9 (integrator complex subunit 9 [Source:ZFIN;Acc:ZDB-GENE-061013-129])

HSP 1 Score: 48.521 bits (114), Expect = 4.143e-6
Identity = 54/286 (18.88%), Postives = 106/286 (37.06%), Query Frame = 1 
Query:  559 GIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFS--------------RQEDRHLMSA--EIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDN------RPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELK 1350
             +  T   +G+ LG+  ++I+    K+ Y    S              R  D  +++   +IP A P+ ++ +                 F + +   +  GG  L+P F  G   +L+  L +Y      L S+P+Y+ S +A   +   Q +   + +  + +    + PF+   ++ L+    +  +      +PCVV A    ++ G      E W  +  N VI      E         AP +         PL     Y       ++ Q S+ +++L+
Sbjct:    5 AVSVTPLSSGYCLGSCNWLIQSQHEKVAYVSGSSLLTTHPQPMEHAPLRGSDAMILTGLTQIPLANPDNMVGD-----------------FCSNLAVTIRSGGNVLVPCFPSGVIYDLLECLYQYMDSA-NLSSVPLYFISPVASSSLEFSQIFAEWLCQSKQSKVYLPEPPFLHAEMNRLKHYPSIHGDFSSEFRQPCVVFAGHPSLRCGDVVHFLELWGKNNLNTVIFT----EPDFPYMEALAPYQ---------PLAMKAVYCPIDTRLNFMQVSKLLKDLQ 259
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Yeast
Match: YSH1 (Endoribonuclease; subunit of the mRNA cleavage and polyadenylation specificity complex; required for 3' processing, splicing, and transcriptional termination of mRNAs and snoRNAs; protein abundance increases in response to DNA replication stress; YSH1 has a paralog, SYC1, that arose from the whole genome duplication [Source:SGD;Acc:S000004267])

HSP 1 Score: 510.375 bits (1313), Expect = 4.001e-171
Identity = 272/661 (41.15%), Postives = 403/661 (60.97%), Query Frame = 1 
Query:  145 LKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSN-------NGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHP-ELQS--IPIYYASQLARKCISVYQTYIHAMNERVRKQ-QEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQ--SLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYE-----DDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQ-----------------KPVNGQR----------------------IQGILVK--KNFSYHIVTPNDL-PIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVL--------------------LLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAE 1887
             K   LG   EVGRSC +L++KGK ++LD GIHP  +G   LPF D  D  +   L++ SHFHLDH  +LP+++ +T  + R +MTH TKAIYR++L D++RV++        G+    L+++ D+++S DKI+T+D+H  +++NGIKFTA+HAGHVLGAAMF IEIAG+++L+TGD+SR+ DRHL SAE+PP    VLI E+T+GT  H+ R  RE + T L+H+ V RGGR L+P FALGRAQE+MLILDEYWSQH  EL    +PI+YAS LA+KC+SV+QTY++ MN+ +RK+ +++  NPF+F++IS LR ++D  D  P V++ASPGM+QSGLSR+L E WC + +N V+I GY +EGT+AK I+  P  +P++N    ++P +C V+ ISF+AH D+Q+  EFI ++   +++LVHGE N M +LK AL   +      D+E   + +  P N   V  +F+G K+AK VG +  +                 +P+  +                       + GILV   KNF    ++ +DL   + DLST+ +R++ S+       L+ +H+  + G  EVL                    L    K I ++ G I +T    + V+EW  + +ND  AD++  I M  +
Sbjct:    9 FKFFSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLI-SHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKGTDNE---VHVFNPRNCVEVDLEFQGVKVAKAVGNIVNEIYKEENVEIKEEIAAKIEPIKEENEDNLDSQAEKGLVDEEEHKDIVVSGILVSDDKNFELDFLSLSDLREHHPDLSTTILRERQSVRVNCKKELIYWHILQMFGEAEVLQDDDRVTNQEPKVKEESKDNLTNTGKLILQIMGDIKLTIVNTLAVVEWTQDLMNDTVADSIIAILMNVD 665
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Nematostella
Match: EDO39587 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S9J6])

HSP 1 Score: 800.045 bits (2065), Expect = 0.000e+0
Identity = 393/679 (57.88%), Postives = 507/679 (74.67%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCLMPV 2166
            EESD L+ITPLG+GQEVGRSC +L+FKGKK++LDCGIHPG+ G E LPFLD ID  E   L++ SHFHLDHCG+LP LL KT  + R +MTHATKAIYR++L+DY++VSN  +    L+ E D+  S+DKI+T+ FHQ+ E+ GIKF  YHAGHVLGA MFM+EIAGVKILYTGDFSRQEDRHLM+AEIP   P+VLI E+TYGTHIH+KREEREARFT  VH+IV+RGGRCLIP FALGRAQEL+LILDEYW  HPEL  IPIYYASQLA+KC+SV+QTY++AMN++++KQ  A  NPFVF+HISNL++ID  DD  P VVMASPGMMQSGLSRELFE WC D RNGVIIAGYCVEGTLAK ++S P EV TM+GQ +P KCSVDYISFSAHTD++QTSEFIR LKP H++LVHGE+NEM +LK AL REYED     + +  P N ++V+  FRGEKMAK++GQ+A +KP +G+ + GIL+K+ F+YH++ P+DL  YT+L+TS + QK S+ F    S+L+  L  +AG ++ + ++G K   RVFG I V  E   V+IEW  N +NDM+ADAV  + ++ E      Q    L K++   + D +++ +   +G   ++ + + GD   + + +D  +  IN   L V+C +D+ L+  V   ++RL     P+
Sbjct:   16 EESDLLRITPLGSGQEVGRSCHILEFKGKKVMLDCGIHPGMTGVESLPFLDEIDTAEIDLLLV-SHFHLDHCGSLPWLLEKTTFKGRVFMTHATKAIYRWLLSDYVKVSNIAAE-DMLFTESDLEKSMDKIETLHFHQEKEVGGIKFWCYHAGHVLGACMFMLEIAGVKILYTGDFSRQEDRHLMAAEIPSISPDVLIIESTYGTHIHEKREEREARFTGTVHDIVNRGGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASQLAKKCMSVFQTYVNAMNDKIKKQI-AISNPFVFKHISNLKSIDQFDDIGPSVVMASPGMMQSGLSRELFEQWCTDRRNGVIIAGYCVEGTLAKNLMSEPEEVQTMSGQKIPRKCSVDYISFSAHTDFEQTSEFIRILKPPHIVLVHGEQNEMGRLKAALIREYEDKSEVSLVVHNPPNCQSVELYFRGEKMAKVMGQMAREKPEHGKPLSGILIKRGFNYHLIAPDDLQNYTELATSVLTQKQSVAFHGAFSVLKQCLENLAGRLDEVTIQG-KSAVRVFGAITVMHEKSSVLIEWVANSVNDMYADAVLAVVLQVESNPTAAQAAANLKKIDVHTFTDKLMALLQATYGSKQVSLSAL-GDE--ITVEYDGNKALINLDTLDVEC-EDESLDHHVSCAVKRLHSAFTPI 686
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Nematostella
Match: EDO29004 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T4V8])

HSP 1 Score: 383.645 bits (984), Expect = 6.382e-127
Identity = 181/239 (75.73%), Postives = 206/239 (86.19%), Query Frame = 1 
Query:  511 LDKIDT--IDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQI 1221
            LD+IDT  ID   + E+ GIKF  YHAGHVLGA MFM+EIAGVKILYTGDFSRQEDRHLM+AEIP   P+VLI E+TYGTHIH+KREEREARFT  VH+IV+RGGRCLIP FALGRAQEL+LILDEYW  HPEL  IPIYYASQLA+KC+SV+QTY++AMN++++KQ  A  NPFVF+HISNL++ID  DD  P VVMASPGMMQSGLSRELFE WC D RNGVIIAGYCVEGTLAK++
Sbjct:   65 LDEIDTAEIDLLLEKEVGGIKFWCYHAGHVLGACMFMLEIAGVKILYTGDFSRQEDRHLMAAEIPSISPDVLIIESTYGTHIHEKREEREARFTGTVHDIVNRGGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASQLAKKCMSVFQTYVNAMNDKIKKQI-AISNPFVFKHISNLKSIDQFDDIGPSVVMASPGMMQSGLSRELFEQWCTDRRNGVIIAGYCVEGTLAKEV 302

HSP 2 Score: 85.1149 bits (209), Expect = 1.161e-17
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPF 276
            EESD L+ITPLG+GQEVGRSC +L+FKGKK++LDCGIHPG+ G E LPF
Sbjct:   16 EESDLLRITPLGSGQEVGRSCHILEFKGKKVMLDCGIHPGMTGVESLPF 64

HSP 3 Score: 70.4774 bits (171), Expect = 8.216e-13
Identity = 27/56 (48.21%), Postives = 44/56 (78.57%), Query Frame = 1 
Query: 1453 ISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDL 1620
            +  P N ++V+  FRGEKMAK++GQ+A +KP +G+ + GIL+K+ F+YH++ P+DL
Sbjct:  306 VHNPPNCQSVELYFRGEKMAKVMGQMAREKPEHGKPLSGILIKRGFNYHLIAPDDL 361
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Nematostella
Match: EDO47866 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RL47])

HSP 1 Score: 291.582 bits (745), Expect = 1.016e-89
Identity = 164/425 (38.59%), Postives = 242/425 (56.94%), Query Frame = 1 
Query:  223 ILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEING-IKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETV 1482
            +LDCG+H G       P            E  D +LISHFHLDHCGALP+     G     YMTH TKAI   +L DY +++       + +  + I + + K+  I+ HQ I+++  ++  AY+AGHVLGA MF + +    ++YTGD++   DRHL SA I   RP++LITE+TY T I D +  RE  F   VH  + +GG+ LIP FALGRAQEL ++L+ YW +   L++ PIY+++ L  K    Y+ +I   N+++ K     +N F F+HI        +D+  P VV A+PGM+ +GLS ++F+ W  +  N V+I GYCV GT+  ++L+   ++       + +K SV Y+SFSAH D     + IR  +P +V+LVHGE  +M  LK  +++E      +RI    P N ETV
Sbjct:    1 MLDCGMHMGYNDERRFPDFDYITRSGKLTEHLDCVLISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVERKGETNFFTSQMIKDCMKKVVPINLHQSIKVDDELEIKAYYAGHVLGAVMFHMRVGTESVVYTGDYNMTPDRHLGSAWIDKCRPDILITESTYATTIRDSKRCRERDFLKKVHETMEKGGKVLIPVFALGRAQELCILLETYWERM-NLKA-PIYFSTGLTEKANHYYKLFITWTNQKI-KNTFVQRNMFEFEHIKPFDR-SYIDNPGPMVVFATPGMLHAGLSLQIFKKWASNENNMVVIPGYCVAGTVGHKVLAGQKKIELDKKNVIDVKLSVQYMSFSAHADAAGIMQLIRTAEPRNVILVHGEGGKMEFLKQKIEQE------FRIPCYKPANGETV 415
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Nematostella
Match: EDO46395 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RPX1])

HSP 1 Score: 124.79 bits (312), Expect = 1.716e-29
Identity = 97/369 (26.29%), Postives = 177/369 (47.97%), Query Frame = 1 
Query:  145 LKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEI----NGIKFTAYHAGHVLGAAMFMIEIAGVK-ILYTGDFSRQEDRHLMSAEIPP-ARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQ-HPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQE-ANQNPFVFQHISNLRAIDDLDD-NRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQIL 1224
            +K+  L    +    C LL+    + +LDCG +  L   +      I   +++ D +L+S   + H G LP+L+ K GL    Y T     + +  + D+ +   N S    +++  D+    DKI  + + Q + +    +GI  T Y AGH++G  M+ I   G + I+Y  D++ +++RHL  A +   +RP +LIT++    +I  +R ER+ +    +   + R G  +I     GR  EL  +LD+ W      L +  +   + ++   I   ++ +  M++++ K  E    NP+ F++     ++ DL     P VV+AS   + +G SR+LF  W  + +N VI       GTLA+ ++
Sbjct:    5 IKLNVLSGAHDEAPLCYLLQVDEFRFLLDCGWNETL---DMEIMESIKRHVQQVDAVLVSFPDIYHMGGLPYLVGKCGLHCPIYTTIPVYKMGQMFMYDWYQCHQN-SEEFDVFSLDDVDAVFDKIIQLKYSQTVSLKGKGHGITITPYAAGHMIGGTMWKIVKDGEEDIIYAVDYNHKKERHLNGAVLETLSRPSLLITDSFNALNIQTRRRERDTQLMGEILKTMRRHGNVMIAIDTAGRVLELSQLLDQLWRNLDSGLSAYSLAMLNNVSYNVIEFAKSQVEWMSDKIMKAFEIGRNNPYQFRYCHLCHSLADLARVPEPKVVLASMMDLTAGFSRDLFVEWADNPKNTVIFTARSSPGTLARTLI 369
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Nematostella
Match: INTS9 (Integrator complex subunit 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:A7SBF0])

HSP 1 Score: 70.0922 bits (170), Expect = 1.777e-12
Identity = 79/387 (20.41%), Postives = 148/387 (38.24%), Query Frame = 1 
Query:  322 SHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSN----------------------------NGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGI-KFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHI---SNLRAIDDLDDN------RPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVML 1368
            S++H  H  ALP +   +G   + Y T  T  I R ++ + +  +                             N  S   LY++ D+   + KI  + + +++++ GI + +A+ +G  LG++ +M+E    KI Y    S      L   +      +VLI        I D  +     F T + + +  GG  L+P +  G   +L   L  Y   + +L  +PIY+ S +A   ++    Y   + +  + +    + PF    +   + L+   +L +        PCVV      ++ G +    E W     N VI      E         AP +         PL     Y       ++ Q ++ ++EL+P H+++
Sbjct:  106 SNYH--HMLALPFITEYSGFNGKIYATEPTIQIGRDLMLELVTFAERVPKRRNGNMWKNDNVIRCLPAPLNELANVKSWRVLYSKHDVKACISKIQAVSYSEKLDLCGILQLSAHSSGFCLGSSNWMLESEYEKISYLSPSSSFTTHPLPLNQTVLKNSDVLIITGVTEAPI-DNPDAMLGEFCTHLASTLRAGGNVLVPCYPSGVLYDLFECLYTYL-DNAKLGMVPIYFISPVADSSLAYSNIYGEWLCQSKQTKVYLPEPPFPHAELLKEARLKVFSNLHNGFSSSFKTPCVVFTGHPSLRYGDAVHFMEIWGKSGNNTVIFT----EPDFPYLEALAPYQ---------PLAMKTCYCPIDPRLNFAQANKLLKELQPRHLVM 475
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Medaka
Match: cpsf3 (cleavage and polyadenylation specific factor 3 [Source:NCBI gene;Acc:101164375])

HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 396/681 (58.15%), Postives = 504/681 (74.01%), Query Frame = 1 
Query:  130 EESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLP-TQGMPQLAK--MNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCLMP 2163
            EESD+L I PLGAGQEVGRSC++L+FKG+KI+LDCGIHPGL G + LP++D+ID  E   L++ SHFHLDHCGALP  L KT  + R +MTHATKAIYR++L+DYI+VSN  S+   LY E D+ +S++KI+TI+FH+  E+ GIKF  YHAGHVLGAAMFMIEIAGVK+LYTGDFSRQEDRHLM+AEIP  +P++LITE+TYGTHIH+KREEREARF   VH+IV+R GRCLIP FALGRAQEL+LILDEYW  HPEL  IPIYYAS LARKC++VYQTYI+AMN+++RK    N NPFVF+HISNL+++D  DD  P VVMASPGMMQSGLSRELFE+WC D RNGVIIAGYCVEGTLAK I++ P E+ TM+GQ LPLK SVDYISFSAHTDYQQTSEFIR LKP HV+LVHGE+NEM +LK AL REYED++   I++  P NTE V   FRGEK+AK++G LA QK   GQR+ GILVK+NF+YHI+ P+DL  YTDLS   V Q  ++ F  P SLL   L  +AG+++  +   +K   ++F  I +  E  +V +EW ++P+NDM+AD V  + +  E++  P TQ   +  +   ++ ++ + +   + DMFG+  +  +    +S    +  D     IN     V C +D+ L  ++   + RL+  L P
Sbjct:   14 EESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI-SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYIKVSNI-SADEMLYTETDLEDSMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKIRKAINVN-NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMTEPDEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADQKCAQGQRVSGILVKRNFNYHILMPSDLCKYTDLSVGTVTQSQAIPFTGPISLLVSQLRNLAGDVQ-QVEGAEKITVKIFKSISLVHEAGMVQLEWNSSPLNDMYADVVATVVL--EVQSNPNTQKFLEGRRETFDEEVFVERLELMLHDMFGEDCVNFS----NSESFSVMVDGATATINPVTRVVTCAEDEPLREMIEVAVHRLYDALSP 684
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Medaka
Match: ints11 (integrator complex subunit 11 [Source:NCBI gene;Acc:101158609])

HSP 1 Score: 334.724 bits (857), Expect = 6.420e-105
Identity = 179/457 (39.17%), Postives = 276/457 (60.39%), Query Frame = 1 
Query:  142 ELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEING-IKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDD--LDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFK 1491
            E+K+TPLGAGQ+VGRSC+L+   GK I+LDCG+H G       P            +  D ++ISHFHLDHCGALP++    G     YMTH TKAI   +L D+ +++ +     + +  + I + + K+  ++ HQ ++++  ++  AY+AGHVLGAAM  I++    ++YTGD++   DRHL +A I   RP++LI+E+TY T I D +  RE  F   VH  + RGG+ LIP FALGRAQEL ++L+ +W +   L++ PIY+++ +  K    Y+ +I   N+++RK     +N F F+HI   +A D    D+  P VV A+PGM+ +G S ++F+ W  + +N VI+ GYCV+GT+  +IL+   ++      +L +K  V+Y+SFSAH D +   + IR  +P +++LVHGE  +M  LKG +++E+       ID   P N ETV  K
Sbjct:    3 EIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVYIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLIPVFALGRAQELCILLETFWERM-NLKA-PIYFSTGMTEKANHYYKLFITWTNQKIRKTF-VQRNMFEFKHI---KAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQGTIGHKILNGQRKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEAAKMEFLKGKIEQEFS------IDCYMPANGETVTVK 447
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Medaka
Match: ints11 (integrator complex subunit 11 [Source:NCBI gene;Acc:101158609])

HSP 1 Score: 322.783 bits (826), Expect = 2.819e-100
Identity = 174/450 (38.67%), Postives = 269/450 (59.78%), Query Frame = 1 
Query:  163 GAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEING-IKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDD--LDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFK 1491
            GAGQ+VGRSC+L+   GK I+LDCG+H G       P            +  D ++ISHFHLDHCGALP++    G     YMTH TKAI   +L D+ +++ +     + +  + I + + K+  ++ HQ ++++  ++  AY+AGHVLGAAM  I++    ++YTGD++   DRHL +A I   RP++LI+E+TY T I D +  RE  F   VH  + RGG+ LIP FALGRAQEL ++L+ +W +   L++ PIY+++ +  K    Y+ +I   N+++RK     +N F F+HI   +A D    D+  P VV A+PGM+ +G S ++F+ W  + +N VI+ GYCV+GT+  +IL+   ++      +L +K  V+Y+SFSAH D +   + IR  +P +++LVHGE  +M  LKG +++E+       ID   P N ETV  K
Sbjct:   16 GAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVYIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLIPVFALGRAQELCILLETFWERM-NLKA-PIYFSTGMTEKANHYYKLFITWTNQKIRKTF-VQRNMFEFKHI---KAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQGTIGHKILNGQRKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEAAKMEFLKGKIEQEFS------IDCYMPANGETVTVK 453
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Medaka
Match: cpsf2 (cleavage and polyadenylation specific factor 2 [Source:NCBI gene;Acc:101164198])

HSP 1 Score: 120.939 bits (302), Expect = 8.285e-28
Identity = 74/271 (27.31%), Postives = 141/271 (52.03%), Query Frame = 1 
Query:  454 SNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEI----NGIKFTAYHAGHVLGAAMFMIEIAGVK-ILYTGDFSRQEDRHLMSAEIPPA-RPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYW-SQHPELQSIPIYYASQLARKCISVYQTYIHAMNERV-RKQQEANQNPFVFQHISNLRAIDDLDD-NRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAE 1239
            S N S   +L+   D+ ++ DKI  + + Q + +    +G+  T   AGH++G  ++ I   G + I+Y  DF+ + + HL    +    RP +LIT++   T++  +R++R+ +  T V   +   G  LI     GR  EL  +LD+ W ++   L + P+   + ++   +   ++ +  M++++ R  ++   NPF F+H++   ++ DL     P VV+ S   ++SG SRELF  WC +++N +I+      GTL + ++  P E
Sbjct:   58 SRNNSEDFTLFTLDDVDSAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCTLESINRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGTYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLNLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQNSKNSIILTYRTTPGTLGRYLIDHPGE 328
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Planmine SMEST
Match: SMESG000066903.1 (SMESG000066903.1)

HSP 1 Score: 1403.27 bits (3631), Expect = 0.000e+0
Identity = 691/695 (99.42%), Postives = 691/695 (99.42%), Query Frame = 1 
Query:  100 MDNDNLIFDEEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIE----WKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCLMPVKA 2172
            MDNDNLIFDEEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFLDIIDDIEETDLILISHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIE    WKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCLMPVKA
Sbjct:    1 MDNDNLIFDEEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFLDIIDDIEETDLILISHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEVGIHWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCLMPVKA 695
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Planmine SMEST
Match: SMESG000066903.1 (SMESG000066903.1)

HSP 1 Score: 1167.14 bits (3018), Expect = 0.000e+0
Identity = 574/574 (100.00%), Postives = 574/574 (100.00%), Query Frame = 1 
Query:  100 MDNDNLIFDEEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIE 1821
            MDNDNLIFDEEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFLDIIDDIEETDLILISHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIE
Sbjct:    1 MDNDNLIFDEEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFLDIIDDIEETDLILISHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIE 574
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Planmine SMEST
Match: SMESG000002177.1 (SMESG000002177.1)

HSP 1 Score: 1165.21 bits (3013), Expect = 0.000e+0
Identity = 558/691 (80.75%), Postives = 623/691 (90.16%), Query Frame = 1 
Query:  100 MDNDNLIFDEEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYHIVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLRGDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGLPTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFDSKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCLMPVKA 2172
            M+ DN+   EEESDE+KI PLGAGQEVGRSC+LLKFKGKKIILDCGIHPG+RG  CLPFLD ID+IE TDLILISHFHLDHCG LPHLL +TG ++RC+MTHATKAIYRYIL+DYIRV+NNG+S HS+YNERDI+ SLDKI+ +DFHQQ+EINGIKFTAYHAGHVLGAAMFMIEIAGV+ILYTGDFSRQEDRHL SAEIPP +PE+LITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMN+RV+KQQ ANQNPFVF+HI NLRAIDDLDDN+PCVVMASPGMMQSGLSRELFENWC D+RNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNH+MLVHGEKNEML+LK ALQREYEDDESYRIDI+TP N E VQ++FRGEKMAKIVGQ+A +KP N Q I GILVK NFSY +V PNDL +YTDLST+D+R K+S +FKNPPSLLQFHL+LVAG +E  L +G  Q+FRVFGVI+VTW+P  V +EWK++ INDMFAD+V CI MKAE++G+P QG+  L K N   +K+ V+STM DMFG ++IA  EV G+S  V+IAFD KEI I+C LLTVQC QD+KLE++VLGT+QRL HCLMPVKA
Sbjct:    1 MEIDNITC-EEESDEMKIIPLGAGQEVGRSCILLKFKGKKIILDCGIHPGIRGDNCLPFLDFIDEIETTDLILISHFHLDHCGGLPHLLQRTGSKARCFMTHATKAIYRYILSDYIRVTNNGTSLHSIYNERDIVQSLDKIENVDFHQQMEINGIKFTAYHAGHVLGAAMFMIEIAGVRILYTGDFSRQEDRHLRSAEIPPEKPEILITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNDRVQKQQAANQNPFVFKHIMNLRAIDDLDDNQPCVVMASPGMMQSGLSRELFENWCCDSRNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHLMLVHGEKNEMLRLKAALQREYEDDESYRIDITTPANVEEVQYRFRGEKMAKIVGQIALKKPENNQHITGILVKNNFSYIVVAPNDLRLYTDLSTTDIRNKVSTSFKNPPSLLQFHLSLVAGTVEPRLEKGHIQVFRVFGVIEVTWQPGFVTVEWKSSHINDMFADSVMCIIMKAEMQGVPDQGLSPLVKPNPKHFKECVVSTMEDMFGAATIADREVQGNSGTVRIAFDEKEIIIDCHLLTVQCPQDRKLEAVVLGTVQRLHHCLMPVKA 690
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Planmine SMEST
Match: SMESG000066903.1 (SMESG000066903.1)

HSP 1 Score: 848.966 bits (2192), Expect = 0.000e+0
Identity = 421/422 (99.76%), Postives = 422/422 (100.00%), Query Frame = 1 
Query:  100 MDNDNLIFDEEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVM 1365
            MDNDNLIFDEEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFLDIIDDIEETDLILISHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHV+
Sbjct:    1 MDNDNLIFDEEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLPFLDIIDDIEETDLILISHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVV 422
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Planmine SMEST
Match: SMESG000067453.1 (SMESG000067453.1)

HSP 1 Score: 322.013 bits (824), Expect = 1.659e-99
Identity = 170/456 (37.28%), Postives = 263/456 (57.68%), Query Frame = 1 
Query:  139 DELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPGLRGSECLP----FXXXXXXXXXXXXXXXSHFHLDHCGALPHLLFKTGLRSRCYMTHATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQIEING-IKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIPPARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALGRAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVRKQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFENWCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISFSAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRIDISTPCNTETVQFK 1491
            +E+K+ PLGAGQ+VGRSC+L+   GK I+ DCG+H G    +  P            E  + ++ISHFHLDHCGALP+     G     YMTH TKAI   +L DY +++ +     + + +  I   + K+  +  HQ I+++  ++   ++AGHVLGAAMF++++  + +LYTGD++   DRHL +A I    P +LITE TY T I D +  RE  F   +   ++ GG+ LIP FALGRAQEL ++L+ YW +     S PIY ++ +  K    Y+ ++   NE++ K+    +N F F+H+  L   D+ + + P VV ASPGM+  G S  +F+ W  + +N VII GYCV GT+  +I S   ++   + Q++ ++  V+Y+SFSAH D +   + I + +P +V+LVHGE  +M  LK  ++ E      +++    P N E V  K
Sbjct:    2 NEIKVVPLGAGQDVGRSCILVSLGGKNIMFDCGMHMGYNNEKRFPDFSYITRSQSVDEYLNCVIISHFHLDHCGALPYFTEMVGYNGPIYMTHPTKAICPILLEDYRKLTVDKRGDQNFFTQEMIFKCMKKVKCVYLHQMIKVDDELEIQPFYAGHVLGAAMFLVKVGKLSVLYTGDYNMTPDRHLGAANISRCEPNLLITETTYATTIRDSKRVREREFIDKILATLANGGKVLIPVFALGRAQELCILLESYWDRMN--LSYPIYLSTGMGEKANEYYKLFVSWTNEKI-KETFVERNMFDFKHVKPLLQGDE-NKSMPMVVFASPGMLDGGHSLNIFKKWANNEKNMVIIPGYCVAGTVGHKIQSNVKKIE-FDKQTIDVRIKVEYLSFSAHADAKGIMQLIDQCRPRNVLLVHGESTKMDFLKSRIEHE------FKLKCLKPANGEMVTIK 446
The following BLAST results are available for this feature:
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
CPSF30.000e+058.98cleavage and polyadenylation specific factor 3 [So... [more]
CPSF30.000e+058.10cleavage and polyadenylation specific factor 3 [So... [more]
INTS114.422e-10439.29integrator complex subunit 11 [Source:HGNC Symbol;... [more]
INTS117.104e-10039.01integrator complex subunit 11 [Source:HGNC Symbol;... [more]
INTS113.006e-9136.64integrator complex subunit 11 [Source:HGNC Symbol;... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4
Match NameE-valueIdentityDescription
cpsf-30.000e+053.56Cleavage and Polyadenylation Specificity Factor [... [more]
F10B5.84.291e-10339.07pep chromosome:WBcel235:II:8141213:8143478:-1 gene... [more]
cpsf-21.050e-3730.03Probable cleavage and polyadenylation specificity ... [more]
F19F10.121.858e-720.25pep chromosome:WBcel235:V:7575750:7581532:1 gene:W... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Cpsf730.000e+057.88gene:FBgn0261065 transcript:FBtr0083690[more]
IntS114.585e-10340.18gene:FBgn0039691 transcript:FBtr0085476[more]
Cpsf1006.489e-3226.72gene:FBgn0027873 transcript:FBtr0085357[more]
IntS93.224e-1120.73gene:FBgn0036570 transcript:FBtr0075495[more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cpsf30.000e+058.92cleavage and polyadenylation specific factor 3 [So... [more]
ints112.132e-10337.03integrator complex subunit 11 [Source:NCBI gene;Ac... [more]
ints114.102e-10337.03integrator complex subunit 11 [Source:NCBI gene;Ac... [more]
ints112.385e-4940.64integrator complex subunit 11 [Source:NCBI gene;Ac... [more]
cpsf23.322e-3427.01cleavage and polyadenylation specific factor 2 [So... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cpsf30.000e+058.02cleavage and polyadenylation specific factor 3 [So... [more]
cpsf30.000e+058.80cleavage and polyadenylation specific factor 3 [So... [more]
cpsf30.000e+057.69cleavage and polyadenylation specific factor 3 [So... [more]
cpsf30.000e+056.83cleavage and polyadenylation specific factor 3 [So... [more]
cpsf30.000e+057.10cleavage and polyadenylation specific factor 3 [So... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Cpsf30.000e+058.54cleavage and polyadenylation specificity factor 3 ... [more]
Cpsf30.000e+065.17cleavage and polyadenylation specificity factor 3 ... [more]
Cpsf31.480e-10869.33cleavage and polyadenylation specificity factor 3 ... [more]
Ints113.036e-10438.99integrator complex subunit 11 [Source:MGI Symbol;A... [more]
Cpsf34.556e-10271.98cleavage and polyadenylation specificity factor 3 ... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P79101|CPSF3_BOVIN0.000e+059.12Cleavage and polyadenylation specificity factor su... [more]
sp|Q9UKF6|CPSF3_HUMAN0.000e+058.98Cleavage and polyadenylation specificity factor su... [more]
sp|Q9QXK7|CPSF3_MOUSE0.000e+058.54Cleavage and polyadenylation specificity factor su... [more]
sp|Q9VE51|CPSF3_DROME0.000e+057.88Cleavage and polyadenylation specificity factor 73... [more]
sp|Q86A79|CPSF3_DICDI0.000e+050.25Cleavage and polyadenylation specificity factor su... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A023ZSQ40.000e+0100.00Cleavage and polyadenylation specificity factor su... [more]
A0A4Z2DSF30.000e+066.91Cleavage and polyadenylation specificity factor su... [more]
A0A3Q0KIM90.000e+067.06Cleavage and polyadenylation specificity factor-re... [more]
A0A4S2LLZ40.000e+065.69Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A267EYG90.000e+064.51Uncharacterized protein OS=Macrostomum lignano OX=... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cpsf30.000e+058.63cleavage and polyadenylation specific factor 3 [So... [more]
cpsf30.000e+056.58cleavage and polyadenylation specific factor 3 [So... [more]
cpsf30.000e+058.51cleavage and polyadenylation specific factor 3 [So... [more]
ints111.013e-10335.82integrator complex subunit 11 [Source:NCBI gene;Ac... [more]
cpsf21.304e-3326.74cleavage and polyadenylation specific factor 2 [So... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 4
Match NameE-valueIdentityDescription
cpsf30.000e+066.36cleavage and polyadenylation specific factor 3 [So... [more]
ENSPMAT00000006433.11.492e-3740.23pep scaffold:Pmarinus_7.0:GL482897:11374:16985:1 g... [more]
ENSPMAT00000006932.14.796e-3326.93pep scaffold:Pmarinus_7.0:GL476370:652825:673040:-... [more]
ints94.143e-618.88integrator complex subunit 9 [Source:ZFIN;Acc:ZDB-... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
YSH14.001e-17141.15Endoribonuclease; subunit of the mRNA cleavage and... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO395870.000e+057.88Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO290046.382e-12775.73Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO478661.016e-8938.59Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO463951.716e-2926.29Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
INTS91.777e-1220.41Integrator complex subunit 9 homolog [Source:UniP... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
cpsf30.000e+058.15cleavage and polyadenylation specific factor 3 [So... [more]
ints116.420e-10539.17integrator complex subunit 11 [Source:NCBI gene;Ac... [more]
ints112.819e-10038.67integrator complex subunit 11 [Source:NCBI gene;Ac... [more]
cpsf28.285e-2827.31cleavage and polyadenylation specific factor 2 [So... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000066903.10.000e+099.42SMESG000066903.1[more]
SMESG000066903.10.000e+0100.00SMESG000066903.1[more]
SMESG000002177.10.000e+080.75SMESG000002177.1[more]
SMESG000066903.10.000e+099.76SMESG000066903.1[more]
SMESG000067453.11.659e-9937.28SMESG000067453.1[more]
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Cross References
External references for this transcript
DatabaseAccession
SmedGD GBrowseSMED30020565
GenBankAHY82408.1
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30020565 ID=SMED30020565|Name=cleavage and polyadenylation specificity factor subunit 3|organism=Schmidtea mediterranea sexual|type=transcript|length=2302bp
TTTACATCATATGTGATAACATATTTTAATTTTTAATAAAAATTTATCGA
AATAGCTTTGTTTTAATATTATTTTTAATTATGGCTATTTTCGACAATTA
TGGATAACGATAATTTAATTTTTGACGAAGAAGAAAGTGATGAATTAAAG
ATTACTCCACTAGGAGCAGGCCAAGAAGTCGGTAGATCATGCGTCTTGTT
GAAATTCAAAGGAAAAAAAATTATTTTGGATTGTGGTATTCACCCTGGGT
TAAGAGGAAGTGAATGCCTACCATTTCTGGACATAATCGACGATATAGAA
GAAACAGACCTTATATTAATTAGCCATTTTCATCTTGATCATTGTGGTGC
ACTGCCTCATTTGTTATTTAAAACTGGACTGAGATCTCGATGTTACATGA
CCCATGCGACAAAGGCGATTTATCGATATATTCTAGCTGATTATATTCGA
GTGAGTAATAACGGATCAAGTGCCCATTCACTTTATAATGAGCGCGATAT
AATAAACAGTCTGGATAAGATAGATACAATAGATTTTCATCAACAAATCG
AGATAAATGGTATTAAATTTACAGCTTACCATGCTGGTCATGTGTTAGGC
GCAGCTATGTTTATGATCGAAATAGCTGGAGTTAAGATTCTATATACTGG
GGATTTTAGTCGCCAAGAAGATCGGCATTTGATGAGTGCAGAGATTCCCC
CAGCGAGACCGGAAGTTCTCATAACCGAAGCAACATATGGTACTCATATT
CACGATAAACGTGAAGAACGAGAGGCAAGGTTTACAACTCTCGTTCATAA
TATTGTTAGCCGTGGCGGCCGTTGTCTTATTCCGGCATTTGCACTAGGTC
GAGCACAAGAGCTGATGCTGATCCTGGATGAATATTGGTCCCAACATCCA
GAATTGCAATCGATCCCGATCTATTATGCCAGCCAATTGGCCCGCAAATG
CATCAGTGTCTATCAGACATATATCCATGCAATGAATGAAAGGGTTCGTA
AACAACAGGAGGCCAATCAAAACCCGTTTGTGTTCCAACATATTAGCAAT
TTGCGTGCAATTGATGATCTGGATGACAATCGACCGTGCGTGGTGATGGC
ATCGCCTGGAATGATGCAGTCCGGCCTGAGCAGGGAGCTTTTTGAGAATT
GGTGCTATGATGCTCGGAATGGAGTTATTATCGCTGGATATTGTGTTGAA
GGAACTCTGGCTAAGCAGATATTGTCCGCACCCGCAGAAGTTCCGACAAT
GAATGGACAATCACTCCCGTTGAAATGCTCAGTGGATTACATCAGTTTCT
CTGCTCACACTGATTACCAGCAGACGAGCGAGTTCATTCGGGAATTGAAA
CCCAATCACGTAATGTTAGTGCACGGTGAGAAAAATGAAATGCTGAAGTT
GAAAGGCGCTCTTCAGAGAGAATATGAAGATGATGAATCCTATCGTATCG
ACATCAGCACTCCGTGTAACACCGAAACTGTCCAGTTTAAATTCCGCGGA
GAAAAGATGGCAAAAATTGTCGGCCAGCTTGCAGGGCAAAAACCGGTCAA
TGGGCAGCGCATTCAAGGCATCCTAGTGAAAAAAAATTTCTCCTATCACA
TCGTTACCCCTAATGATTTGCCGATTTACACCGACCTGTCCACCAGTGAT
GTGAGACAGAAACTGTCAATGACATTCAAGAATCCTCCATCACTTCTCCA
GTTCCACTTGACCCTTGTTGCTGGTAACATAGAGGTTCTGTTGCTACGTG
GTGACAAGCAGATATTTCGCGTGTTTGGGGTGATCGATGTCACCTGGGAG
CCCCGCATAGTTGTCATTGAGTGGAAAACCAACCCGATCAATGACATGTT
TGCCGATGCAGTCACCTGCATCACAATGAAGGCGGAACTTGAGGGATTGC
CCACACAAGGAATGCCGCAGTTAGCTAAAATGAATCAATCCCTGTATAAG
GATAGTGTCATTTCGACAATGTCGGATATGTTCGGCCAAAGCTCTATCGC
TGCTACCGAGGTGGACGGGGATTCTAATATCGTGAAAATTGCTTTCGACT
CCAAGGAAATATTTATCAATTGTCGTCTCTTGACAGTCCAGTGTTACCAG
GACAAAAAGTTGGAGAGTATCGTCCTTGGAACTATTCAAAGGCTTTTCCA
TTGTCTAATGCCAGTGAAGGCCTAGATTCAATTGATTTGGTTTTTGATTG
GCGGAATTTGTGTAAATACATTCTGTGTGTCGTTTTGATTTGTTCTGGTG
GATTGTGTACACCACCAATAAGCATAATACTTAATACTCATTTGATAGAT
CA
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protein sequence of SMED30020565-orf-1

>SMED30020565-orf-1 ID=SMED30020565-orf-1|Name=SMED30020565-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=692bp
MDNDNLIFDEEESDELKITPLGAGQEVGRSCVLLKFKGKKIILDCGIHPG
LRGSECLPFLDIIDDIEETDLILISHFHLDHCGALPHLLFKTGLRSRCYM
THATKAIYRYILADYIRVSNNGSSAHSLYNERDIINSLDKIDTIDFHQQI
EINGIKFTAYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMSAEIP
PARPEVLITEATYGTHIHDKREEREARFTTLVHNIVSRGGRCLIPAFALG
RAQELMLILDEYWSQHPELQSIPIYYASQLARKCISVYQTYIHAMNERVR
KQQEANQNPFVFQHISNLRAIDDLDDNRPCVVMASPGMMQSGLSRELFEN
WCYDARNGVIIAGYCVEGTLAKQILSAPAEVPTMNGQSLPLKCSVDYISF
SAHTDYQQTSEFIRELKPNHVMLVHGEKNEMLKLKGALQREYEDDESYRI
DISTPCNTETVQFKFRGEKMAKIVGQLAGQKPVNGQRIQGILVKKNFSYH
IVTPNDLPIYTDLSTSDVRQKLSMTFKNPPSLLQFHLTLVAGNIEVLLLR
GDKQIFRVFGVIDVTWEPRIVVIEWKTNPINDMFADAVTCITMKAELEGL
PTQGMPQLAKMNQSLYKDSVISTMSDMFGQSSIAATEVDGDSNIVKIAFD
SKEIFINCRLLTVQCYQDKKLESIVLGTIQRLFHCLMPVKA*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR036866RibonucZ/Hydroxyglut_hydro
IPR001279Metallo-B-lactamas
IPR021718CPSF73-100_C
IPR022712Beta_Casp
IPR011108RMMBL
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0004518nuclease activity
GO:0004519endonuclease activity
GO:0004521endoribonuclease activity
GO:0005515protein binding
GO:00084095'-3' exonuclease activity
GO:0016787hydrolase activity
GO:0046872metal ion binding
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005847mRNA cleavage and polyadenylation specificity factor complex
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: biological process
TermDefinition
GO:0006397mRNA processing
GO:0006398mRNA 3'-end processing by stem-loop binding and cleavage
GO:0090305nucleic acid phosphodiester bond hydrolysis
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022712Beta-Casp domainSMARTSM01027Beta_Casp_2coord: 252..374
e-value: 3.0E-42
score: 156.3
IPR022712Beta-Casp domainPFAMPF10996Beta-Caspcoord: 252..374
e-value: 5.8E-34
score: 116.7
IPR001279Metallo-beta-lactamaseSMARTSM00849Lactamase_B_5acoord: 28..240
e-value: 6.8E-14
score: 62.2
IPR001279Metallo-beta-lactamasePFAMPF16661Lactamase_B_6coord: 33..199
e-value: 2.1E-24
score: 86.1
IPR021718Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-termSMARTSM01098CPSF73_100_C_2coord: 484..689
e-value: 5.0E-28
score: 109.1
IPR021718Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-termPFAMPF11718CPSF73-100_Ccoord: 486..688
e-value: 5.5E-39
score: 134.0
NoneNo IPR availableGENE3DG3DSA:3.40.50.10890coord: 220..400
e-value: 3.0E-164
score: 548.2
NoneNo IPR availablePANTHERPTHR11203:SF11CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 3coord: 9..689
NoneNo IPR availablePANTHERPTHR11203CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBERcoord: 9..689
NoneNo IPR availableCDDcd16292CPSF3-like_MBL-foldcoord: 16..211
e-value: 6.48066E-129
score: 377.311
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeGENE3DG3DSA:3.60.15.10coord: 21..435
e-value: 3.0E-164
score: 548.2
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeSUPERFAMILYSSF56281Metallo-hydrolase/oxidoreductasecoord: 13..466
IPR011108Zn-dependent metallo-hydrolase, RNA specificity domainPFAMPF07521RMMBLcoord: 389..451
e-value: 2.6E-18
score: 65.7