SMED30020537

Overview
NameSMED30020537
Smed IDSMED30020537
Length (bp)2505
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30020537 (SMED30020537) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30020537 (SMED30020537) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30020537 (SMED30020537) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30020537 (SMED30020537) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30020537

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30020537h1SMcG0016487 Contig49607uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30020537h1SMcG0016487 Contig49607newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
pharynxSMED30020537h1SMcG0016487 dd_Smed_v4_1676_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30020537h1SMcG0016487 dd_Smed_v4_1676_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30020537h1SMcG0016487 dd_Smed_v4_1676_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30020537h1SMcG0016487 dd_Smed_v4_1676_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30020537h1SMcG0016487 dd_Smed_v4_1676_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30020537h1SMcG0016487 dd_Smed_v4_1676_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
pharynxSMED30020537h1SMcG0016487 dd_Smed_v4_1676_0_1dd_Smed_v4PMID:30962434
Cote et al., 2019		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30020537 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000656:82089..90337 -12056
Homology
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BLAST of SMED30020537 vs. Planmine SMEST
Match: SMESG000040594.1 (SMESG000040594.1)

HSP 1 Score: 1175.23 bits (3039), Expect = 0.000e+0
Identity = 631/638 (98.90%), Postives = 635/638 (99.53%), Query Frame = 2 
Query:   77 MITKILLFFFAIQTISCQGLLSAMLANPTISKFTNLINGVQELKDYCNNLAMVIFVPSDAVMNAFSLTGINTVNLVKSHMYQSNLPKSSSPIVGTTSNWTNYENVIPRAPPNFYRMVSIGNLNTFFMYVSGSQFYVNEALLISPNNVITNSTQVYHVIDKVLNSSFSGGFMRYLQLNTSLSKTMAYWTLLKDAADKGNLPDSSFFKSVFLQFTAAFPGTMLVPSNAAWDAVGDLTSYSNVTTLASAMSRFYIPDVVIFLNGSSVSFLAGFNAAPQTSPTGLVPGVITADLQVSVQNFTGRIIRSNIPMAYGVIHIIDNAFATPVTLNSYLSNYNKLFVNKINELGLSNYLDGSYTIMAMDDTTVAKLTGNVTQALLNSFIKNPSVLTDKPQQTAGGLTVSLISMYSKYFLAVQNSATDNTWISIVPVLGLNQMVGPTYVTRLNGSLSGNPSQCDVTLQTLNSSVYSXXXXXXXXXXXXGSPYTLLVPNDAAMLPYIANQTVLNTPLIKYVLQRMIIPNRLIFNTRTPGSFYAATMNYAAMLETINMXXXXXGANISFKDFQQTFNFSGGGFYCYSNSMNDSTRFNLIYPXXXXXXXXXXXXXKLCVIPPCVGCQVRFSWXXXXXXXXXXXXQIGNPEL 1990
            MITKILLFFFAIQTISCQGLLSAMLANPTISKFTNLINGVQELKDYCNNLAMVIFVPSD VMNAFSLTGINTVNLVKSHMYQSNLPKSSSPIVGTTSNWTNYENVIPRAPPNFYRMVSIGNLNTFFMYVSGSQFYVNEALLISPNNVITNSTQVYHVIDKVLNSSFSG F+RYLQ NTSLSKTMAYWTLLKDAADKGNLPDSSFFKSVFLQFTAAFPGTMLVPSNAAWDAVGDLTSY+NVTTLASAMSRFYIPDVVIFLNGSSVSFLAGFNAAPQTSPTGLVPGVITADLQVSVQNFTGRII+SNIPMAYGVIHIIDNAFATPVTLNSYLSNYNKLFVNKINELGLS+YLDGSYTIMAMDDTTVAKLTGNVTQALLNSFIKNPSVLTDKPQQTAGGLTVSLISMYSKYFLAVQNSATDNTWISIVPVLGLNQMVGPTYVTRLNGSLSGNPSQCDVTLQTLNSSVYSNLLTVNNITINIGSPYTLLVPNDAAMLPYIANQTVLNTPLIKYVLQRMIIPNRLIFNTRTPGSFYAATMNYAAMLETINMTTTTTGANISFKDFQQTFNFSGGGFYCYSNSMNDSTRFNLIYPVSFVVSSVSDSPVKLCVIPPCVGCQVRFSWLLLVAICLLVCCQIGNPEL
Sbjct:    1 MITKILLFFFAIQTISCQGLLSAMLANPTISKFTNLINGVQELKDYCNNLAMVIFVPSDVVMNAFSLTGINTVNLVKSHMYQSNLPKSSSPIVGTTSNWTNYENVIPRAPPNFYRMVSIGNLNTFFMYVSGSQFYVNEALLISPNNVITNSTQVYHVIDKVLNSSFSGSFIRYLQSNTSLSKTMAYWTLLKDAADKGNLPDSSFFKSVFLQFTAAFPGTMLVPSNAAWDAVGDLTSYNNVTTLASAMSRFYIPDVVIFLNGSSVSFLAGFNAAPQTSPTGLVPGVITADLQVSVQNFTGRIIQSNIPMAYGVIHIIDNAFATPVTLNSYLSNYNKLFVNKINELGLSSYLDGSYTIMAMDDTTVAKLTGNVTQALLNSFIKNPSVLTDKPQQTAGGLTVSLISMYSKYFLAVQNSATDNTWISIVPVLGLNQMVGPTYVTRLNGSLSGNPSQCDVTLQTLNSSVYSNLLTVNNITINIGSPYTLLVPNDAAMLPYIANQTVLNTPLIKYVLQRMIIPNRLIFNTRTPGSFYAATMNYAAMLETINMTTTTTGANISFKDFQQTFNFSGGGFYCYSNSMNDSTRFNLIYPVSFVVSSVSDSPVKLCVIPPCVGCQVRFSWLLLVAICLLVCCQIGNPEL 638
[Close]
BLAST of SMED30020537 vs. Planmine SMEST
Match: SMESG000040594.1 (SMESG000040594.1)

HSP 1 Score: 1129.78 bits (2921), Expect = 0.000e+0
Identity = 608/615 (98.86%), Postives = 612/615 (99.51%), Query Frame = 2 
Query:  146 MLANPTISKFTNLINGVQELKDYCNNLAMVIFVPSDAVMNAFSLTGINTVNLVKSHMYQSNLPKSSSPIVGTTSNWTNYENVIPRAPPNFYRMVSIGNLNTFFMYVSGSQFYVNEALLISPNNVITNSTQVYHVIDKVLNSSFSGGFMRYLQLNTSLSKTMAYWTLLKDAADKGNLPDSSFFKSVFLQFTAAFPGTMLVPSNAAWDAVGDLTSYSNVTTLASAMSRFYIPDVVIFLNGSSVSFLAGFNAAPQTSPTGLVPGVITADLQVSVQNFTGRIIRSNIPMAYGVIHIIDNAFATPVTLNSYLSNYNKLFVNKINELGLSNYLDGSYTIMAMDDTTVAKLTGNVTQALLNSFIKNPSVLTDKPQQTAGGLTVSLISMYSKYFLAVQNSATDNTWISIVPVLGLNQMVGPTYVTRLNGSLSGNPSQCDVTLQTLNSSVYSXXXXXXXXXXXXGSPYTLLVPNDAAMLPYIANQTVLNTPLIKYVLQRMIIPNRLIFNTRTPGSFYAATMNYAAMLETINMXXXXXGANISFKDFQQTFNFSGGGFYCYSNSMNDSTRFNLIYPXXXXXXXXXXXXXKLCVIPPCVGCQVRFSWXXXXXXXXXXXXQIGNPEL 1990
            MLANPTISKFTNLINGVQELKDYCNNLAMVIFVPSD VMNAFSLTGINTVNLVKSHMYQSNLPKSSSPIVGTTSNWTNYENVIPRAPPNFYRMVSIGNLNTFFMYVSGSQFYVNEALLISPNNVITNSTQVYHVIDKVLNSSFSG F+RYLQ NTSLSKTMAYWTLLKDAADKGNLPDSSFFKSVFLQFTAAFPGTMLVPSNAAWDAVGDLTSY+NVTTLASAMSRFYIPDVVIFLNGSSVSFLAGFNAAPQTSPTGLVPGVITADLQVSVQNFTGRII+SNIPMAYGVIHIIDNAFATPVTLNSYLSNYNKLFVNKINELGLS+YLDGSYTIMAMDDTTVAKLTGNVTQALLNSFIKNPSVLTDKPQQTAGGLTVSLISMYSKYFLAVQNSATDNTWISIVPVLGLNQMVGPTYVTRLNGSLSGNPSQCDVTLQTLNSSVYSNLLTVNNITINIGSPYTLLVPNDAAMLPYIANQTVLNTPLIKYVLQRMIIPNRLIFNTRTPGSFYAATMNYAAMLETINMTTTTTGANISFKDFQQTFNFSGGGFYCYSNSMNDSTRFNLIYPVSFVVSSVSDSPVKLCVIPPCVGCQVRFSWLLLVAICLLVCCQIGNPEL
Sbjct:    1 MLANPTISKFTNLINGVQELKDYCNNLAMVIFVPSDVVMNAFSLTGINTVNLVKSHMYQSNLPKSSSPIVGTTSNWTNYENVIPRAPPNFYRMVSIGNLNTFFMYVSGSQFYVNEALLISPNNVITNSTQVYHVIDKVLNSSFSGSFIRYLQSNTSLSKTMAYWTLLKDAADKGNLPDSSFFKSVFLQFTAAFPGTMLVPSNAAWDAVGDLTSYNNVTTLASAMSRFYIPDVVIFLNGSSVSFLAGFNAAPQTSPTGLVPGVITADLQVSVQNFTGRIIQSNIPMAYGVIHIIDNAFATPVTLNSYLSNYNKLFVNKINELGLSSYLDGSYTIMAMDDTTVAKLTGNVTQALLNSFIKNPSVLTDKPQQTAGGLTVSLISMYSKYFLAVQNSATDNTWISIVPVLGLNQMVGPTYVTRLNGSLSGNPSQCDVTLQTLNSSVYSNLLTVNNITINIGSPYTLLVPNDAAMLPYIANQTVLNTPLIKYVLQRMIIPNRLIFNTRTPGSFYAATMNYAAMLETINMTTTTTGANISFKDFQQTFNFSGGGFYCYSNSMNDSTRFNLIYPVSFVVSSVSDSPVKLCVIPPCVGCQVRFSWLLLVAICLLVCCQIGNPEL 615
The following BLAST results are available for this feature:
BLAST of SMED30020537 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30020537 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000040594.10.000e+098.90SMESG000040594.1[more]
SMESG000040594.10.000e+098.86SMESG000040594.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30020537 ID=SMED30020537|Name=SMED30020537|organism=Schmidtea mediterranea sexual|type=transcript|length=2505bp
CGGAAAACAACTTGAATTTATTATTTCCTGATTCAAAATATAATTTATTA
CAAGATTATTAATTTATATTATGTTTATGATCACTAAGATATTATTATTT
TTCTTTGCTATCCAGACGATCAGTTGCCAGGGTTTACTATCGGCAATGCT
GGCAAACCCTACTATTTCTAAATTTACCAATCTAATAAATGGTGTACAAG
AATTAAAAGATTATTGTAATAATCTCGCAATGGTCATATTTGTTCCGTCA
GATGCGGTGATGAACGCCTTTAGTTTAACGGGAATAAATACTGTGAATCT
AGTGAAAAGTCACATGTATCAATCCAACTTACCTAAAAGTTCTTCACCGA
TTGTTGGGACGACATCTAATTGGACAAACTATGAGAATGTGATTCCAAGA
GCTCCACCCAATTTTTATCGAATGGTTTCCATCGGTAATCTAAATACCTT
CTTTATGTATGTCAGTGGATCACAATTCTATGTCAATGAAGCTCTGTTGA
TATCGCCTAATAACGTTATCACCAACAGCACCCAGGTTTATCACGTCATT
GACAAGGTGCTCAATAGCTCTTTCAGTGGAGGTTTCATGAGATATCTCCA
ATTAAATACTTCTCTTTCGAAGACCATGGCATATTGGACCTTACTTAAGG
ATGCTGCTGACAAGGGCAATTTGCCCGATTCAAGCTTTTTCAAATCAGTT
TTTCTACAATTTACTGCCGCCTTTCCGGGCACAATGCTCGTTCCTAGCAA
TGCAGCTTGGGATGCGGTTGGTGATTTGACCTCGTATAGTAATGTCACCA
CGCTGGCCTCAGCCATGTCGAGATTCTACATCCCGGATGTTGTGATTTTC
CTTAATGGCAGCAGCGTCAGTTTCCTAGCGGGATTTAATGCCGCCCCGCA
GACTTCTCCTACCGGTCTAGTTCCGGGTGTTATAACGGCGGATTTGCAAG
TGAGCGTGCAGAATTTCACCGGCCGAATCATCCGATCAAATATTCCCATG
GCATACGGAGTCATCCATATAATTGATAACGCATTTGCCACTCCGGTAAC
GCTGAATTCCTATCTGAGCAATTACAACAAATTATTCGTCAATAAAATAA
ACGAGCTGGGCCTATCGAACTATCTGGACGGCAGCTATACAATAATGGCA
ATGGATGACACGACAGTGGCCAAACTGACAGGAAATGTCACACAAGCCCT
ATTGAACTCCTTCATTAAAAACCCCTCGGTTCTCACTGACAAGCCGCAGC
AAACTGCAGGAGGCCTCACTGTCAGCTTAATCTCGATGTACTCCAAATAC
TTCTTGGCGGTCCAGAATTCAGCAACCGACAATACCTGGATAAGTATCGT
TCCGGTTCTCGGCTTGAACCAGATGGTGGGGCCGACCTATGTCACCAGAC
TCAATGGCTCATTGAGCGGCAATCCTAGCCAGTGTGACGTCACCTTGCAG
ACATTGAATAGCAGCGTCTACTCAAACTTGCTGACCGTCAATAACATCAC
AATCAATATTGGCAGCCCTTACACTCTCCTTGTGCCAAATGACGCGGCTA
TGCTCCCTTATATTGCTAATCAAACGGTACTCAATACTCCTCTCATCAAA
TATGTCCTGCAAAGGATGATCATTCCAAACCGGCTCATTTTCAACACGAG
AACTCCTGGCAGCTTTTATGCGGCAACGATGAATTACGCCGCAATGTTGG
AGACTATCAACATGACCACTACTACTACAGGCGCCAATATCTCTTTCAAG
GACTTCCAGCAAACGTTCAATTTCTCTGGAGGTGGATTCTATTGCTACTC
GAATTCGATGAATGATTCGACAAGATTCAATCTCATTTACCCAGTTTCAT
TTGTTGTCTCGAGCGTCTCTGATTCCCCTGTAAAGTTGTGTGTGATCCCT
CCTTGTGTAGGGTGCCAAGTCAGGTTCAGTTGGCTGCTGCTTGTCGCCAT
CTGCCTGCTGGTGTGCTGCCAGATTGGGAATCCAGAACTCTGAGCCTGTG
ACATGCCAATGGGAAATATCACATCAGTAATTACCGACAATTTCAATAAC
TTTCTTTTTTACCATTTACTTGTTGTTTACTATTTATCATTGACTTTTTA
ACCTCTTCAGGCTTTGCAAGCTGATTTATGATGGCTGTGAGATTTTTGGC
GTTCTTTCTCATTTGAGGCTGTGACAACCATTTGCCCATAATATCACCCT
GTTGTGAGTATCTGTCTCACTGTGTGTATGTGTGTGTGTATGTGTGTGTG
ATATAATCTACGGAGAATTTTTATTTATGTTTTTTGATAAAAAATATATT
TGTATGCTAACTTTATTTGGCGGTTGATTTCATGGATAAAACTTCGGTTG
CCATGGTGATAATTGGCAGCTGAAATGGTATTATATAATTATATAATTAT
TTTCTCATTTAAAAATTTCGGTTTACCAATATTGAATAATCAATCACAAA
TATTATTATTGTTCATTGATCACTATTGATTATTATTTAATATTTGTTAT
TATTG
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protein sequence of SMED30020537-orf-1

>SMED30020537-orf-1 ID=SMED30020537-orf-1|Name=SMED30020537-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=641bp
MFMITKILLFFFAIQTISCQGLLSAMLANPTISKFTNLINGVQELKDYCN
NLAMVIFVPSDAVMNAFSLTGINTVNLVKSHMYQSNLPKSSSPIVGTTSN
WTNYENVIPRAPPNFYRMVSIGNLNTFFMYVSGSQFYVNEALLISPNNVI
TNSTQVYHVIDKVLNSSFSGGFMRYLQLNTSLSKTMAYWTLLKDAADKGN
LPDSSFFKSVFLQFTAAFPGTMLVPSNAAWDAVGDLTSYSNVTTLASAMS
RFYIPDVVIFLNGSSVSFLAGFNAAPQTSPTGLVPGVITADLQVSVQNFT
GRIIRSNIPMAYGVIHIIDNAFATPVTLNSYLSNYNKLFVNKINELGLSN
YLDGSYTIMAMDDTTVAKLTGNVTQALLNSFIKNPSVLTDKPQQTAGGLT
VSLISMYSKYFLAVQNSATDNTWISIVPVLGLNQMVGPTYVTRLNGSLSG
NPSQCDVTLQTLNSSVYSNLLTVNNITINIGSPYTLLVPNDAAMLPYIAN
QTVLNTPLIKYVLQRMIIPNRLIFNTRTPGSFYAATMNYAAMLETINMTT
TTTGANISFKDFQQTFNFSGGGFYCYSNSMNDSTRFNLIYPVSFVVSSVS
DSPVKLCVIPPCVGCQVRFSWLLLVAICLLVCCQIGNPEL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR036378FAS1_dom_sf
IPR000782FAS1_domain
IPR006588Peptide_N_glycanase_PAW_dom
Vocabulary: biological process
TermDefinition
GO:0006516glycoprotein catabolic process
Vocabulary: cellular component
TermDefinition
GO:0005737cytoplasm
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036378FAS1 domain superfamilyGENE3DG3DSA:2.30.180.10coord: 204..325
e-value: 1.5E-7
score: 33.6
IPR036378FAS1 domain superfamilySUPERFAMILYSSF82153FAS1 domaincoord: 478..537
IPR036378FAS1 domain superfamilySUPERFAMILYSSF82153FAS1 domaincoord: 219..322
NoneNo IPR availablePANTHERPTHR10900PERIOSTIN-RELATEDcoord: 55..325
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.891
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
IPR000782FAS1 domainPROSITEPS50213FAS1coord: 19..164
score: 9.028