Tigger transposable element-derived protein 2

Overview
NameTigger transposable element-derived protein 2
Smed IDSMED30020511
Length (bp)2059
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Tigger transposable element-derived protein 2 (SMED30020511) t-SNE clustered cells

Violin plots show distribution of expression levels for Tigger transposable element-derived protein 2 (SMED30020511) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Tigger transposable element-derived protein 2 (SMED30020511) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Tigger transposable element-derived protein 2 (SMED30020511) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30020511

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30020511SMESG000016577.1 SMESG000004570.1 dd_Smed_v4_6184_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30020511SMESG000016577.1 SMESG000004570.1 dd_Smed_v4_6184_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30020511SMESG000016577.1 SMESG000004570.1 dd_Smed_v4_6184_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30020511SMESG000016577.1 SMESG000004570.1 dd_Smed_v4_6184_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30020511SMESG000016577.1 SMESG000004570.1 dd_Smed_v6_6184_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Category 3 cellSMED30020511SMESG000068262.1 SMESG000053435.1 SMESG000049288.1 dd_Smed_v6_6797_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Human
Match: JRKL (JRK like [Source:HGNC Symbol;Acc:HGNC:6200])

HSP 1 Score: 64.6994 bits (156), Expect = 3.054e-10
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:  547 FMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGE 780
            F  S GW+ +FK+RHSIR + I  E+L+ + + +  F   F+   E   + PEQIYNADETGL +K   S+  V  G+
Sbjct:  119 FNPSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDFIERENLQPEQIYNADETGLFWKCLPSRISVIKGK 196
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Human
Match: JRK (Jrk helix-turn-helix protein [Source:HGNC Symbol;Acc:HGNC:6199])

HSP 1 Score: 60.8474 bits (146), Expect = 6.491e-9
Identity = 58/206 (28.16%), Postives = 82/206 (39.81%), Query Frame = 1 
Query:  229 LSLDEKCKILDALEDNMKSKDLCKRYRVNKSTISKIRTNRKT-----------KEITQRR*YSLQKNQENFRR*SS*S*KGYLSVVFE*--AT*S*DCHRLNPAV--KALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFK---NPNSKTLVSNGEKNAK 792
            L+L EK  I   LE     K L + Y V  ST+  IR ++             K + QRR     K +   R            V++E      S       P +  KA + +  +      + S GW+ +FK RH I+ L    EK S +H     F   F+    E  +  EQ+YNADETGL ++   NP  +     G K  K
Sbjct:   20 LTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNKALEQRRTLHTPKLEHLDR------------VLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGK 213
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Human
Match: JRK (Jrk helix-turn-helix protein [Source:HGNC Symbol;Acc:HGNC:6199])

HSP 1 Score: 60.8474 bits (146), Expect = 6.491e-9
Identity = 58/206 (28.16%), Postives = 82/206 (39.81%), Query Frame = 1 
Query:  229 LSLDEKCKILDALEDNMKSKDLCKRYRVNKSTISKIRTNRKT-----------KEITQRR*YSLQKNQENFRR*SS*S*KGYLSVVFE*--AT*S*DCHRLNPAV--KALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFK---NPNSKTLVSNGEKNAK 792
            L+L EK  I   LE     K L + Y V  ST+  IR ++             K + QRR     K +   R            V++E      S       P +  KA + +  +      + S GW+ +FK RH I+ L    EK S +H     F   F+    E  +  EQ+YNADETGL ++   NP  +     G K  K
Sbjct:   20 LTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNKALEQRRTLHTPKLEHLDR------------VLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGK 213
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Human
Match: JRK (Jrk helix-turn-helix protein [Source:HGNC Symbol;Acc:HGNC:6199])

HSP 1 Score: 60.077 bits (144), Expect = 9.934e-9
Identity = 58/206 (28.16%), Postives = 82/206 (39.81%), Query Frame = 1 
Query:  229 LSLDEKCKILDALEDNMKSKDLCKRYRVNKSTISKIRTNRKT-----------KEITQRR*YSLQKNQENFRR*SS*S*KGYLSVVFE*--AT*S*DCHRLNPAV--KALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFK---NPNSKTLVSNGEKNAK 792
            L+L EK  I   LE     K L + Y V  ST+  IR ++             K + QRR     K +   R            V++E      S       P +  KA + +  +      + S GW+ +FK RH I+ L    EK S +H     F   F+    E  +  EQ+YNADETGL ++   NP  +     G K  K
Sbjct:   20 LTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNKALEQRRTLHTPKLEHLDR------------VLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGK 213
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Human
Match: JRK (Jrk helix-turn-helix protein [Source:HGNC Symbol;Acc:HGNC:6199])

HSP 1 Score: 60.077 bits (144), Expect = 9.934e-9
Identity = 58/206 (28.16%), Postives = 82/206 (39.81%), Query Frame = 1 
Query:  229 LSLDEKCKILDALEDNMKSKDLCKRYRVNKSTISKIRTNRKT-----------KEITQRR*YSLQKNQENFRR*SS*S*KGYLSVVFE*--AT*S*DCHRLNPAV--KALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFK---NPNSKTLVSNGEKNAK 792
            L+L EK  I   LE     K L + Y V  ST+  IR ++             K + QRR     K +   R            V++E      S       P +  KA + +  +      + S GW+ +FK RH I+ L    EK S +H     F   F+    E  +  EQ+YNADETGL ++   NP  +     G K  K
Sbjct:   20 LTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNKALEQRRTLHTPKLEHLDR------------VLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGK 213
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Xenopus
Match: kif6 (kinesin family member 6 [Source:Xenbase;Acc:XB-GENE-1014042])

HSP 1 Score: 50.8322 bits (120), Expect = 7.104e-6
Identity = 53/224 (23.66%), Postives = 93/224 (41.52%), Query Frame = 1 
Query:  196 ISVTISKRKPKLSLDEKCKILDALEDNMKSKDLCKRYRVNKSTISKIR-------------------TNRKTKEITQRR*YSL---------QKNQENFRR*SS*S*KGYLSVVFE*AT*S*DCHRLNPAVKALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGEK 783
            I     +++  LS+ +K  +L  LE+    K LC +Y +  STI  ++                    +RKT  + Q +  S+         Q+ +ENF            S++                 +A + H  LN +     S GW  KFK+R+ + +L I GEK S  ++    F++K  +   +  +  EQ+YNA +  L +++   K LV+  +K
Sbjct:  176 IPPDTKRKRVSLSIKDKVTLLQDLENGASVKSLCDKYGIGTSTIYDLKKQKDKLLTFYSNSDAPDLMADRKT--LHQAKNVSVDKVLMEWIRQRRRENFPL--------SRSLIM---------------AQAKKFHVLLNISTPCEYSSGWYGKFKKRNGLSILSINGEKASEEYNVADNFVKKLNKLVSDEHLSAEQVYNAAKASLFWRHLPQK-LVATAQK 373
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Mouse
Match: Jrkl (Jrk-like [Source:MGI Symbol;Acc:MGI:1924782])

HSP 1 Score: 69.3218 bits (168), Expect = 7.606e-12
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:  547 FMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGEKNAKFKAKQHNVSE 822
            F  S GW+ +FK+RHSIR + I  E+L+ + + +  F   F+   E+  + PEQIYNADETGL +K   S+T V  G    K     HN+ E
Sbjct:  119 FNPSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDFIEQENLQPEQIYNADETGLFWKCLPSRTTVIKG----KCTVPGHNLGE 206
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Mouse
Match: Jrk (jerky [Source:MGI Symbol;Acc:MGI:106214])

HSP 1 Score: 60.8474 bits (146), Expect = 4.171e-9
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:  505 KALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKN-PNS 756
            KA + ++ +      + S GW+ +FK RH I+ L    EK + +H     F   F+    E  + PEQ+Y+ADETGLV++  PNS
Sbjct:  115 KAKDFYKQMRLTEPCVFSGGWLWRFKARHGIKKLDASSEKQAADHQAAEQFCGFFRSLAAEHGLSPEQVYSADETGLVWRCLPNS 199
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Mouse
Match: Tigd2 (tigger transposable element derived 2 [Source:MGI Symbol;Acc:MGI:1915390])

HSP 1 Score: 58.5362 bits (140), Expect = 1.978e-8
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:  547 FMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGEKN 786
            F  S GW+ +FK+RH I      G KL  + +  S F   F+   E   +LPEQIY AD+TGL +K   ++TL  + +++
Sbjct:  119 FNASSGWLTRFKQRHGIPKAAGKGTKLKGDETAASEFCGNFQEFVERENLLPEQIYGADQTGLFWKCLPTRTLAFDTDQS 198
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. UniProt/SwissProt
Match: sp|B2RRL2|JERKL_MOUSE (Jerky protein homolog-like OS=Mus musculus OX=10090 GN=Jrkl PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.320e-11
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:  547 FMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGEKNAKFKAKQHNVSE 822
            F  S GW+ +FK+RHSIR + I  E+L+ + + +  F   F+   E+  + PEQIYNADETGL +K   S+T V  G    K     HN+ E
Sbjct:  119 FNPSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDFIEQENLQPEQIYNADETGLFWKCLPSRTTVIKG----KCTVPGHNLGE 206
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. UniProt/SwissProt
Match: sp|Q9Y4A0|JERKL_HUMAN (Jerky protein homolog-like OS=Homo sapiens OX=9606 GN=JRKL PE=2 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 1.467e-9
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:  547 FMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGE 780
            F  S GW+ +FK+RHSIR + I  E+L+ + + +  F   F+   E   + PEQIYNADETGL +K   S+  V  G+
Sbjct:  119 FNPSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDFIERENLQPEQIYNADETGLFWKCLPSRISVIKGK 196
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. UniProt/SwissProt
Match: sp|Q60976|JERKY_MOUSE (Jerky protein OS=Mus musculus OX=10090 GN=Jrk PE=2 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 2.918e-8
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:  505 KALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKN-PNS 756
            KA + ++ +      + S GW+ +FK RH I+ L    EK + +H     F   F+    E  + PEQ+Y+ADETGLV++  PNS
Sbjct:  115 KAKDFYKQMRLTEPCVFSGGWLWRFKARHGIKKLDASSEKQAADHQAAEQFCGFFRSLAAEHGLSPEQVYSADETGLVWRCLPNS 199
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. UniProt/SwissProt
Match: sp|O75564|JERKY_HUMAN (Jerky protein homolog OS=Homo sapiens OX=9606 GN=JRK PE=1 SV=3)

HSP 1 Score: 60.077 bits (144), Expect = 4.771e-8
Identity = 58/206 (28.16%), Postives = 82/206 (39.81%), Query Frame = 1 
Query:  229 LSLDEKCKILDALEDNMKSKDLCKRYRVNKSTISKIRTNRKT-----------KEITQRR*YSLQKNQENFRR*SS*S*KGYLSVVFE*--AT*S*DCHRLNPAV--KALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFK---NPNSKTLVSNGEKNAK 792
            L+L EK  I   LE     K L + Y V  ST+  IR ++             K + QRR     K +   R            V++E      S       P +  KA + +  +      + S GW+ +FK RH I+ L    EK S +H     F   F+    E  +  EQ+YNADETGL ++   NP  +     G K  K
Sbjct:   20 LTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNKALEQRRTLHTPKLEHLDR------------VLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGK 213
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. UniProt/SwissProt
Match: sp|Q0VBL1|TIGD2_MOUSE (Tigger transposable element-derived protein 2 OS=Mus musculus OX=10090 GN=Tigd2 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.384e-7
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:  547 FMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGEKN 786
            F  S GW+ +FK+RH I      G KL  + +  S F   F+   E   +LPEQIY AD+TGL +K   ++TL  + +++
Sbjct:  119 FNASSGWLTRFKQRHGIPKAAGKGTKLKGDETAASEFCGNFQEFVERENLLPEQIYGADQTGLFWKCLPTRTLAFDTDQS 198
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. TrEMBL
Match: A0A4C1SSZ4 (Jerky protein homolog-like OS=Eumeta variegata OX=151549 GN=Jrkl PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.246e-20
Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:  505 KALELHRNL-NCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGEKNA 789
            KA+ELH  +   N  F  S GW+QKFK+R+ IRLLKICGEKLS  H  +  + +K KR+ EEL +  +Q+YNADE+GL +KN  +KT VS+ EK A
Sbjct:    5 KAIELHNQMKENNHAFNASDGWLQKFKKRYGIRLLKICGEKLSARHHLVEPYKQKLKRRIEELGLNNDQLYNADESGLCWKNVPNKTYVSSLEKTA 100
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. TrEMBL
Match: H3AB53 (Uncharacterized protein OS=Latimeria chalumnae OX=7897 GN=LOC102353587 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.044e-17
Identity = 45/95 (47.37%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:  505 KALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGEKNA 789
            KAL+ H+ + C   F  SHGW++ FK+RH IR L I GEKLS N     +FIEKFK   +     P+ IYN  ET L +K   SKT  S  EK+A
Sbjct:  103 KALQFHQAMGCRSEFKASHGWLESFKKRHGIRQLSIEGEKLSPNKGAADSFIEKFKNIIQNEGYTPDLIYNCSETSLYWKVLPSKTFASQSEKSA 197

HSP 2 Score: 26.9498 bits (58), Expect = 1.044e-17
Identity = 13/44 (29.55%), Postives = 26/44 (59.09%), Query Frame = 1 
Query:  214 KRKPKLSLDEKCKILDALEDNMKSKDLCKRYRVNKSTISKIRTN 345
            +++  L L++K  I++ LE+      L K Y + +ST+S ++ N
Sbjct:    3 RKRTVLPLEKKVVIVNRLENGESVTKLAKEYGLGQSTVSDLKRN 46

HSP 3 Score: 25.409 bits (54), Expect = 1.044e-17
Identity = 17/50 (34.00%), Postives = 29/50 (58.00%), Query Frame = 2 
Query:  359 KLHKGDDTVCKKIKRISAVKVPEVEKAIYLWFLNERLNHKIVTD*ILQLK 508
            K+  G   + +KI R   V+V ++++A+Y WFL +R   + V+  IL  K
Sbjct:   56 KMETGAGLLARKIMR-QPVEV-KLDEALYNWFLQKRAKGEPVSGPILSEK 103
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. TrEMBL
Match: A0A1B6FF49 (Uncharacterized protein OS=Cuerna arida OX=1464854 GN=g.11907 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.553e-16
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:  502 VKALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGEKNAK-FKAKQHNVSEFI 828
             KA+E+++ L+ ++ F  S GW+ KFK RH IR L I GEKLS N S ++ F  KF+ K  EL ++ EQ+YN DETGL +K    KTL S  EK A  FK ++  ++  +
Sbjct:  105 AKAVEMNKKLDGDLSFKASIGWLDKFKFRHGIRQLDISGEKLSANSSVIAEFKVKFEEKIAELDLVREQVYNCDETGLNWKALPQKTLASLSEKAAPGFKVQKDRITAMV 214

HSP 2 Score: 25.7942 bits (55), Expect = 2.553e-16
Identity = 12/39 (30.77%), Postives = 21/39 (53.85%), Query Frame = 2 
Query:  350 KLKKLHKGDDTVCKKIKRISAVKVPEVEKAIYLWFLNER 466
            ++ K+H  D  V  + K +   K  E++ A+Y WF+  R
Sbjct:   55 RVSKMHSTDGDVQTR-KTMKPAKYDELDTAMYRWFIQAR 92
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. TrEMBL
Match: A0A2A4K1H2 (Uncharacterized protein OS=Heliothis virescens OX=7102 GN=B5V51_5256 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.885e-16
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:  502 VKALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFK 744
             KA+E ++ +     F  S GW+ KFK+R  IRLL I GEK+S++ S +  FI+ FK K EEL +LP+QIYNADE+GL ++
Sbjct:  102 AKAIEFYQKITHKDDFRASDGWLDKFKKRFGIRLLTISGEKVSSDESAVQPFIQHFKNKVEELGLLPDQIYNADESGLFWR 182

HSP 2 Score: 28.8758 bits (63), Expect = 2.885e-16
Identity = 13/39 (33.33%), Postives = 21/39 (53.85%), Query Frame = 2 
Query:  392 KIKRISAVKVPEVEKAIYLWFLNERLNHKIVTD*ILQLK 508
            K K +     P++E A+Y+WF   R N   ++  IL+ K
Sbjct:   65 KRKTLKVGNCPKMENALYMWFTQRRYNCTPISGEILKAK 103
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. TrEMBL
Match: W8CBP7 (Jerky protein (Fragment) OS=Ceratitis capitata OX=7213 GN=JERKL PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.978e-16
Identity = 39/97 (40.21%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:  499 AVKALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGEKNA 789
            A+KA   ++ +     F+ S GW+++FK RH IRL+ I GEKLS + + +  F  +F +K  +L + P Q+YNADE+GL ++   +KT VS  EK+ 
Sbjct:   28 AMKAKFFYKEITKKDDFVASKGWLERFKSRHGIRLMTITGEKLSNDATCIEPFKLRFLQKVNDLNLDPSQVYNADESGLFWRVMPNKTFVSCNEKDV 124

HSP 2 Score: 36.5798 bits (83), Expect = 4.978e-16
Identity = 14/29 (48.28%), Postives = 21/29 (72.41%), Query Frame = 2 
Query:  422 PEVEKAIYLWFLNERLNHKIVTD*ILQLK 508
            PEVE+A+Y+WFL ER  H  ++  +L +K
Sbjct:    2 PEVEEALYMWFLQERNRHAPISGPMLAMK 30
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004617.1 (pep scaffold:Pmarinus_7.0:GL477874:26927:28564:-1 gene:ENSPMAG00000004208.1 transcript:ENSPMAT00000004617.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 76.6406 bits (187), Expect = 7.018e-15
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:  547 FMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGEKNA 789
            FM S GW++ FK RH IR L + GE+  ++   +  +I +F+   ++  +   QIYNADETGL +K+  SKTL S+ E NA
Sbjct:  127 FMASQGWLRSFKERHGIRRLSVVGERHGSDVDAVREYIARFQAMVDDKGLCASQIYNADETGLFWKSLPSKTLASSSEVNA 207
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Sea Lamprey
Match: JRKL (JRK like [Source:HGNC Symbol;Acc:HGNC:6200])

HSP 1 Score: 53.5286 bits (127), Expect = 1.170e-9
Identity = 30/90 (33.33%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:  505 KALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSN 774
            +A   H +L     F  S GW++ FKRR+ I   ++  EK+S + +      E F +  EE  + P+Q+Y A ETGL +K+  ++T   N
Sbjct:  103 QARHFHEHLGLTEPFAASAGWLRNFKRRYCIG--EVVVEKVSDDAAEALAARESFMKFLEEQGLSPQQVYAATETGLYWKSLPARTAAGN 190

HSP 2 Score: 26.9498 bits (58), Expect = 1.170e-9
Identity = 13/41 (31.71%), Postives = 21/41 (51.22%), Query Frame = 2 
Query:  377 DTVCKKIKRISAVKVPEVEKAIYLWFLNERLNHKIVTD*IL 499
            DT    +K I   + P++E+A+Y WF   R     +T  +L
Sbjct:   60 DTGLSYMKVIRESRFPQLEEAVYKWFRQHRAMGLPITSSML 100
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005656.1 (pep scaffold:Pmarinus_7.0:GL476578:539135:542172:1 gene:ENSPMAG00000005132.1 transcript:ENSPMAT00000005656.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 56.9954 bits (136), Expect = 8.345e-9
Identity = 34/99 (34.34%), Postives = 49/99 (49.49%), Query Frame = 1 
Query:  535 CNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGEKNAK-FKAKQHNVSEFI 828
             N  F  S GW  KFK R+++R LK+ GE    +      F    K   E     PEQ++N +ETGL +K   + T +S  EK A  FKA +  ++  +
Sbjct:  126 ANETFGASTGWYAKFKGRYNLRHLKMTGETAGADVEAAEAFKSTLKEIIEGGGYSPEQVFNVNETGLFWKRMPASTFLSREEKTAPGFKASKDRLALLV 224
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Sea Lamprey
Match: JRKL (JRK like [Source:HGNC Symbol;Acc:HGNC:6200])

HSP 1 Score: 51.9878 bits (123), Expect = 3.309e-7
Identity = 27/80 (33.75%), Postives = 40/80 (50.00%), Query Frame = 1 
Query:  505 KALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFK 744
            KA +LHR+L  +       GW+ +F  RH I  L    E+ ST     S F  +F R  +   ++P+Q+Y A E  L +K
Sbjct:  105 KAQQLHRDLGISEPLNVGCGWLHRFMHRHGIHGLNPQPERFSTEDCATSAFCRRFLRLVDAHALVPDQLYGATELELHWK 184
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001313.1 (pep scaffold:Pmarinus_7.0:GL487606:277:3092:-1 gene:ENSPMAG00000001181.1 transcript:ENSPMAT00000001313.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.0618 bits (118), Expect = 1.104e-6
Identity = 34/110 (30.91%), Postives = 51/110 (46.36%), Query Frame = 1 
Query:  502 VKALELHRNLNCNVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSNGEKNAK-FKAKQHNVSEFI 828
             KAL L  +      F  S GW  KFK R+++  LK+ GE    +      F    K   E     PEQ++N +ET L +K   + T +S  +K A  FKA +  ++  +
Sbjct:  114 AKALRLEESRQAET-FGASTGWYAKFKGRYNLHHLKMTGETAGADVEAAEAFKSTLKEIIEGGGYSPEQVFNVNETRLFWKRMPASTFLSREKKTAPGFKASKDRLALLV 222
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Planmine SMEST
Match: SMESG000032276.1 (SMESG000032276.1)

HSP 1 Score: 58.9214 bits (141), Expect = 8.110e-10
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:  547 FMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLVSN---GEKNAK 792
            F   +GW+QKFK+RHS +L+K+ GE   T     S F+  F+ K +      E +YN DETG+ +K   SKT+  N   G KN K
Sbjct:    4 FKCLYGWLQKFKKRHSFQLIKLHGETFMTEPFDTSDFLTDFQSKLKGYD--KECVYNMDETGIFYKLIPSKTVCQNARSGFKNLK 86
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Planmine SMEST
Match: SMESG000027161.1 (SMESG000027161.1)

HSP 1 Score: 50.447 bits (119), Expect = 2.367e-6
Identity = 23/66 (34.85%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:  547 FMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFK 744
            F  S+GW+ +FK+RH+I  + + GE  S +    +++    K+  EE     +Q+YN DET L +K
Sbjct:  313 FKASNGWLDRFKKRHAISQVLVLGEIRSADKDAANSYPFWLKKFLEEGCYTADQVYNCDETDLCYK 378

HSP 2 Score: 20.4014 bits (41), Expect = 2.367e-6
Identity = 8/32 (25.00%), Postives = 16/32 (50.00%), Query Frame = 2 
Query:  371 GDDTVCKKIKRISAVKVPEVEKAIYLWFLNER 466
            G D +  + KR+ +     ++  +Y WF+  R
Sbjct:  253 GQDELGLQRKRVKSASDNVLDSDLYQWFVQAR 284
[Close]
BLAST of Tigger transposable element-derived protein 2 vs. Planmine SMEST
Match: SMESG000013943.1 (SMESG000013943.1)

HSP 1 Score: 50.0618 bits (118), Expect = 4.912e-6
Identity = 32/109 (29.36%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:  502 VKALELHRNLNC-NVLFMTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQILPEQIYNADETGLVFKNPNSKTLV--SNGEKNAKFKAKQHNVS 819
             KA + +R +N  +  F  S+ W+ +FK+RH+I  + + GE  S +    +++    K+  EE     +Q+YN DETGL +K   ++TL   ++  K   FK ++  ++
Sbjct:  104 AKAEKFNRRINGEDSKFKASNIWLDRFKKRHTISQVLVSGEIHSADKEDANSYPFLLKKFLEEGCYTADQVYNCDETGLCYKMLPNRTLATKTDNHKREGFKKRKDRLT 212
The following BLAST results are available for this feature:
BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
JRKL3.054e-1042.31JRK like [Source:HGNC Symbol;Acc:HGNC:6200][more]
JRK6.491e-928.16Jrk helix-turn-helix protein [Source:HGNC Symbol;A... [more]
JRK6.491e-928.16Jrk helix-turn-helix protein [Source:HGNC Symbol;A... [more]
JRK9.934e-928.16Jrk helix-turn-helix protein [Source:HGNC Symbol;A... [more]
JRK9.934e-928.16Jrk helix-turn-helix protein [Source:HGNC Symbol;A... [more]
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BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
kif67.104e-623.66kinesin family member 6 [Source:Xenbase;Acc:XB-GEN... [more]
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BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Jrkl7.606e-1241.30Jrk-like [Source:MGI Symbol;Acc:MGI:1924782][more]
Jrk4.171e-936.47jerky [Source:MGI Symbol;Acc:MGI:106214][more]
Tigd21.978e-837.50tigger transposable element derived 2 [Source:MGI ... [more]
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BLAST of Tigger transposable element-derived protein 2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|B2RRL2|JERKL_MOUSE5.320e-1141.30Jerky protein homolog-like OS=Mus musculus OX=1009... [more]
sp|Q9Y4A0|JERKL_HUMAN1.467e-942.31Jerky protein homolog-like OS=Homo sapiens OX=9606... [more]
sp|Q60976|JERKY_MOUSE2.918e-836.47Jerky protein OS=Mus musculus OX=10090 GN=Jrk PE=2... [more]
sp|O75564|JERKY_HUMAN4.771e-828.16Jerky protein homolog OS=Homo sapiens OX=9606 GN=J... [more]
sp|Q0VBL1|TIGD2_MOUSE1.384e-737.50Tigger transposable element-derived protein 2 OS=M... [more]
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BLAST of Tigger transposable element-derived protein 2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4C1SSZ44.246e-2053.13Jerky protein homolog-like OS=Eumeta variegata OX=... [more]
H3AB531.044e-1747.37Uncharacterized protein OS=Latimeria chalumnae OX=... [more]
A0A1B6FF492.553e-1644.55Uncharacterized protein OS=Cuerna arida OX=1464854... [more]
A0A2A4K1H22.885e-1649.38Uncharacterized protein OS=Heliothis virescens OX=... [more]
W8CBP74.978e-1640.21Jerky protein (Fragment) OS=Ceratitis capitata OX=... [more]
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BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000004617.17.018e-1543.21pep scaffold:Pmarinus_7.0:GL477874:26927:28564:-1 ... [more]
JRKL1.170e-933.33JRK like [Source:HGNC Symbol;Acc:HGNC:6200][more]
ENSPMAT00000005656.18.345e-934.34pep scaffold:Pmarinus_7.0:GL476578:539135:542172:1... [more]
JRKL3.309e-733.75JRK like [Source:HGNC Symbol;Acc:HGNC:6200][more]
ENSPMAT00000001313.11.104e-630.91pep scaffold:Pmarinus_7.0:GL487606:277:3092:-1 gen... [more]
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BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000032276.18.110e-1041.18SMESG000032276.1[more]
SMESG000027161.12.367e-634.85SMESG000027161.1[more]
SMESG000013943.14.912e-629.36SMESG000013943.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30020511 ID=SMED30020511|Name=Tigger transposable element-derived protein 2|organism=Schmidtea mediterranea sexual|type=transcript|length=2059bp
ATTATTATTATTATTATTATTACAGTAAAGATTCAAAAACTGAAACCCCA
TAGAAGAAACTTTTCACAAAAAGCATCTCTCGGATAAAGAAATATAATTA
TATTCAATTTCAAAATTTTATTCAGTAAAAGCAACCTTCGCAAACTGCGT
TTTTTTAAAAATAATGTGTCAAATATATTATTTAAAATTTAGTATATCTC
AGTCACTATTAGTAAAAGAAAACCAAAATTATCGCTGGATGAAAAATGTA
AAATTTTGGATGCATTAGAAGATAATATGAAATCCAAAGATCTTTGCAAA
CGTTATAGGGTAAACAAAAGTACTATTTCGAAGATACGAACCAATAGGAA
AACTAAAGAAATTACACAAAGGAGATGATACAGTCTGCAAAAAAATCAAG
AGAATTTCCGCCGTTAAAGTTCCTGAAGTTGAAAAGGCTATTTATCTGTG
GTTTTTGAATGAGCGACTTAATCATAAGATTGTCACCGATTAAATCCTGC
AGTTAAAGCTCTAGAACTACATAGAAATTTGAATTGTAATGTTTTATTTA
TGACCAGTCATGGATGGATTCAAAAATTTAAAAGAAGGCACTCAATTCGA
CTTCTTAAAATTTGTGGTGAAAAATTATCAACAAATCATTCTGGTATGTC
TACATTTATTGAAAAGTTCAAAAGAAAACCAGAAGAGCTGCAAATTCTGC
CCGAACAGATTTATAATGCTGATGAAACTGGGCTAGTATTTAAAAACCCT
AATTCAAAAACGTTAGTTTCAAATGGAGAAAAGAACGCGAAATTTAAAGC
AAAACAACATAATGTTTCTGAATTTATTTCAAAATTTACGAAAAGTATAT
AAAAAACCTTCTTTTTACAAAGAAAAAGCCTTCCAATAACCTTCCATAAA
CAACTTGATACATAAACACAATTTTACTCTGGTTTTATTCTTAAAAGCTT
TTTTTTTTAAATAAAATTATCTCTGTCTATTTTTTTCTATATTTTTCTTA
TTTAACTTTTTTCGAACTATAAATTTTTCCTTGTTTATTTTTTAAAAAAC
TGTTAATATCTGTTAATCAAAGTATCAAAGTCAACAACAGATCAGACTGT
CGATTTCACTGATATTTTCTTTAGTGTTGATTGTTGGATGTTTATCTAAG
ATAAAAATTGCCTTTTTGAATTTATAATTTCAACATAGGAATATCCCAAA
ATATTTAAAAGACATATTTTGAAATTAAAAATAAATTTTATTTATATTGC
AGGTGAACCCAGAACTATATAAACAAGTCATATGTCAGTTAAATAAATTA
TCGAAATTGCAATTCTACACAATAATTCATAATAAATTCTTGAGAATTAT
TTCATTAATAATTTTTTGGTCTCTACTCATTGCAATGGGAATTATATTTT
GTTGGAAAGTTGAAGGACAATTAAATGCGGATGTAATTATCACAGTAATA
TTATTAGCAGGATGTTTCGTACCGATTTTTCTCATTTATGGCTGGATGAT
TATTTCGAAAAAGATAAATCATGATACCTACCGAGTTTTAACAAAAATAA
ACGAAGAATTCACTAAATCGAACATTCTCTGCGGTATTGAAGATCCAGAA
ACATGTTCAAAAAACGAAATGAAAATTGCAAGAATGAATTATCTTTCCAA
TTACAGTTCACGAATTTGATCAAAAGAAATTTTTCAAAAACCTGTAAAAT
TATGAATTATTCACCGAATATGACTAGCATCGGTCCAAATAAGGATTTTG
TTGTACAAGGAAATAGTACAGTTTCATATGAAAATAGCCAGATACTCTCT
AAAATGCTATTGTTGTACCATTCGGCGAAATACGTAAGCATGTTCATAAA
AAATGAGCTTCCAATCCCAAATATTCAACTGCACTCTCAAATCAATGTCC
CATGCTTGTGTCAATTTGTGTCCATGATGCACTTCAATTTTGAAACTGGA
TATCTATTAGATTAGAGTTTTTAGCAATAGTTTAGCTTCATAAGTCACTC
CAACTCAAAATTTTTTATCATTTGATTTTTATAAAAACAAAATATAATTT
CATTTTTAT
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protein sequence of SMED30020511-orf-1

>SMED30020511-orf-1 ID=SMED30020511-orf-1|Name=SMED30020511-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=101bp
MTSHGWIQKFKRRHSIRLLKICGEKLSTNHSGMSTFIEKFKRKPEELQIL
PEQIYNADETGLVFKNPNSKTLVSNGEKNAKFKAKQHNVSEFISKFTKSI
*
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protein sequence of SMED30020511-orf-2

>SMED30020511-orf-2 ID=SMED30020511-orf-2|Name=SMED30020511-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=121bp
MFKKRNENCKNELSFQLQFTNLIKRNFSKTCKIMNYSPNMTSIGPNKDFV
VQGNSTVSYENSQILSKMLLLYHSAKYVSMFIKNELPIPNIQLHSQINVP
CLCQFVSMMHFNFETGYLLD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000035Category 3 cell
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR007889HTH_Psq
IPR028054DUF4481
IPR006600HTH_CenpB_DNA-bd_dom
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028054Protein of unknown function DUF4481PFAMPF14800DUF4481coord: 54..106
e-value: 5.6E-7
score: 29.3