Myb_DNA-bind_7 domain-containing protein

Overview
NameMyb_DNA-bind_7 domain-containing protein
Smed IDSMED30020405
Length (bp)1484
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Myb_DNA-bind_7 domain-containing protein (SMED30020405) t-SNE clustered cells

Violin plots show distribution of expression levels for Myb_DNA-bind_7 domain-containing protein (SMED30020405) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Myb_DNA-bind_7 domain-containing protein (SMED30020405) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Myb_DNA-bind_7 domain-containing protein (SMED30020405) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30020405

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
prepharyngeal regionSMED30020405h1SMcG0022314 SmedASXL_073694SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
prepharyngeal regionSMED30020405h1SMcG0022313 SmedASXL_073694SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Human
Match: BDP1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:HGNC Symbol;Acc:HGNC:13652])

HSP 1 Score: 52.373 bits (124), Expect = 1.578e-6
Identity = 34/105 (32.38%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDED-----ETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNS 951
             ++  DG I++D++        T     +E  + I E  +    +Y   RK+  S K W+ +ET  F+LA+  V TDF+ +  +F  R+R ++K KFK EEK N 
Sbjct:  248 VKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGST--TTYSSFRKNYYS-KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNG 349
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Human
Match: BDP1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:HGNC Symbol;Acc:HGNC:13652])

HSP 1 Score: 52.373 bits (124), Expect = 1.578e-6
Identity = 34/105 (32.38%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDED-----ETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNS 951
             ++  DG I++D++        T     +E  + I E  +    +Y   RK+  S K W+ +ET  F+LA+  V TDF+ +  +F  R+R ++K KFK EEK N 
Sbjct:  248 VKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGST--TTYSSFRKNYYS-KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNG 349
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Human
Match: BDP1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:HGNC Symbol;Acc:HGNC:13652])

HSP 1 Score: 52.373 bits (124), Expect = 1.633e-6
Identity = 34/105 (32.38%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDED-----ETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNS 951
             ++  DG I++D++        T     +E  + I E  +    +Y   RK+  S K W+ +ET  F+LA+  V TDF+ +  +F  R+R ++K KFK EEK N 
Sbjct:  248 VKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGST--TTYSSFRKNYYS-KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNG 349
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Human
Match: BDP1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:HGNC Symbol;Acc:HGNC:13652])

HSP 1 Score: 52.7582 bits (125), Expect = 1.667e-6
Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDED-----ETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLN 948
             ++  DG I++D++        T     +E  + I E  +    +Y   RK+  S K W+ +ET  F+LA+  V TDF+ +  +F  R+R ++K KFK EEK N
Sbjct:  248 VKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGST--TTYSSFRKNYYS-KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTN 348
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Human
Match: BDP1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:HGNC Symbol;Acc:HGNC:13652])

HSP 1 Score: 52.7582 bits (125), Expect = 1.710e-6
Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDED-----ETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLN 948
             ++  DG I++D++        T     +E  + I E  +    +Y   RK+  S K W+ +ET  F+LA+  V TDF+ +  +F  R+R ++K KFK EEK N
Sbjct:  248 VKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGST--TTYSSFRKNYYS-KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTN 348
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Fly
Match: Bdp1 (gene:FBgn0032512 transcript:FBtr0080471)

HSP 1 Score: 63.929 bits (154), Expect = 2.170e-10
Identity = 37/123 (30.08%), Postives = 68/123 (55.28%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQ-----RKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNL 1005
             ++D +G+++ID+   E      +EA  +++ N++ + M          ++H+ +   W ++ET  FY +L  + TDF+ M  +F  RSR DLK K+K EE+ N +L+ + L+ P   +I  L
Sbjct:  295 LKLDANGEMIIDEKTLEIETTAEVEA-RKVLANSSLILMDETTGDNGFYKRHKRT-PYWTSDETVRFYRSLQIIGTDFSLMCQMFPTRSRRDLKLKYKKEERTNGQLINKALLYPKAFNIQEL 415
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Fly
Match: Bdp1 (gene:FBgn0032512 transcript:FBtr0342639)

HSP 1 Score: 63.5438 bits (153), Expect = 2.442e-10
Identity = 37/123 (30.08%), Postives = 68/123 (55.28%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQ-----RKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNL 1005
             ++D +G+++ID+   E      +EA  +++ N++ + M          ++H+ +   W ++ET  FY +L  + TDF+ M  +F  RSR DLK K+K EE+ N +L+ + L+ P   +I  L
Sbjct:  295 LKLDANGEMIIDEKTLEIETTAEVEA-RKVLANSSLILMDETTGDNGFYKRHKRT-PYWTSDETVRFYRSLQIIGTDFSLMCQMFPTRSRRDLKLKYKKEERTNGQLINKALLYPKAFNIQEL 415
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000044453.1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:NCBI gene;Acc:100491494])

HSP 1 Score: 56.6102 bits (135), Expect = 8.741e-8
Identity = 35/105 (33.33%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDEDETNMQIGIEAME-EIVENAADL-----RMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLN 948
             ++  DG I++D    E ++ + +   +  IVEN   +       +Y   RK + S K W+ +ET  F+LA+  V TDF+ +  +F  R R ++K KFK EE+LN
Sbjct:  367 VKVAEDGSIILD----EESLTVEVSRTKGPIVENGDPIFERGSTTTYTSFRKSKYS-KPWSEKETDMFFLAISMVGTDFSMITHLFPHRQRIEIKNKFKREERLN 466
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000044513.1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:NCBI gene;Acc:100491494])

HSP 1 Score: 56.225 bits (134), Expect = 1.185e-7
Identity = 35/105 (33.33%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDEDETNMQIGIEAME-EIVENAADL-----RMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLN 948
             ++  DG I++D    E ++ + +   +  IVEN   +       +Y   RK + S K W+ +ET  F+LA+  V TDF+ +  +F  R R ++K KFK EE+LN
Sbjct:  367 VKVAEDGSIILD----EESLTVEVSRTKGPIVENGDPIFERGSTTTYTSFRKSKYS-KPWSEKETDMFFLAISMVGTDFSMITHLFPHRQRIEIKNKFKREERLN 466
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Mouse
Match: Bdp1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:MGI Symbol;Acc:MGI:1347077])

HSP 1 Score: 53.5286 bits (127), Expect = 5.636e-7
Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDED-----ETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLN 948
             ++  DG I++D++        T     +E  + I E  +    +Y   RK+  S K W+ +ET  F+LA+  V TDF+ +  +F  R+R ++K KFK EEK N
Sbjct:  250 VKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGST--TTYSSFRKNYYS-KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTN 350
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Mouse
Match: Bdp1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:MGI Symbol;Acc:MGI:1347077])

HSP 1 Score: 53.5286 bits (127), Expect = 5.984e-7
Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDED-----ETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLN 948
             ++  DG I++D++        T     +E  + I E  +    +Y   RK+  S K W+ +ET  F+LA+  V TDF+ +  +F  R+R ++K KFK EEK N
Sbjct:  250 VKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGS--TTTYSSFRKNYYS-KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTN 350
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. UniProt/SwissProt
Match: sp|O94481|TFC5_SCHPO (Transcription factor TFIIIB component B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=bdp1 PE=3 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 3.655e-6
Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:  664 LDGQIVIDDDEDETNMQ----IGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEIL 972
            ++GQIV+D+   E +      +  E  E + EN+   R++      +R   ++WNA +T  FY AL    TDF  +A +F  R+R  +K KFK EE+ N   V + L
Sbjct:  329 VNGQIVLDETSLEVDRHERDFVPAEEREYVEENSLSRRVTSATW-GNRQKPEKWNAMDTEKFYKALSQWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQAL 434
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q571C7|BDP1_MOUSE (Transcription factor TFIIIB component B'' homolog OS=Mus musculus OX=10090 GN=Bdp1 PE=2 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 4.186e-6
Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDED-----ETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLN 948
             ++  DG I++D++        T     +E  + I E  +    +Y   RK+  S K W+ +ET  F+LA+  V TDF+ +  +F  R+R ++K KFK EEK N
Sbjct:  250 VKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGS--TTTYSSFRKNYYS-KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTN 350
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. UniProt/SwissProt
Match: sp|A6H8Y1|BDP1_HUMAN (Transcription factor TFIIIB component B'' homolog OS=Homo sapiens OX=9606 GN=BDP1 PE=1 SV=3)

HSP 1 Score: 52.7582 bits (125), Expect = 8.214e-6
Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDED-----ETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLN 948
             ++  DG I++D++        T     +E  + I E  +    +Y   RK+  S K W+ +ET  F+LA+  V TDF+ +  +F  R+R ++K KFK EEK N
Sbjct:  248 VKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGST--TTYSSFRKNYYS-KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTN 348
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. TrEMBL
Match: A0A165A5Q3 (SANT domain-containing protein OS=Daphnia magna OX=35525 GN=APZ42_016807 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.763e-12
Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDD-----DEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNLV 1008
             R+  DG+I++D+     D  ET       A   I+   +   ++Y   RK   +G RW+ +ET+ FY AL  + T+F+ M  +F GR R DLK+KFK EEK N  LV +I+ + +  DIS  +
Sbjct:  340 VRLGPDGEIILDERSLVIDTSETKRNKSQLANAPIIIENSSTTVNYGSWRKRPRAG-RWSVKETARFYRALNMLGTNFSLMVKLFPGRDRIDLKRKFKSEEKTNPSLVDKIIATQIPFDISQFM 462
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. TrEMBL
Match: A0A1I8GWI4 (Myb_DNA-bind_7 domain-containing protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.225e-11
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  730 MEEIVENAADLRMSYRD-----QRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEIL 972
            +EE+ E+ A+LR +YR       R     G++W+ +ET  FY A+  + TDF+ MA++FKGRSR +LK+K+K EEK N  L+ ++L
Sbjct:  172 VEEVREDCAELRATYRSFRNVGGRGAATRGRQWSCKETLRFYKAVSTIGTDFSYMASLFKGRSREELKRKYKREEKANPHLIDQML 257
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. TrEMBL
Match: A0A1I8GU79 (Myb_DNA-bind_7 domain-containing protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.130e-11
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  730 MEEIVENAADLRMSYR-----DQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEIL 972
            +EE+ E+ A+LR +YR       R     G++W+ +ET  FY A+  + TDF+ MA++FKGRSR +LK+K+K EEK N  L+ ++L
Sbjct:   90 VEEVREDCAELRATYRSFRNVGGRGAATRGRQWSCKETLRFYKAVSTIGTDFSYMASLFKGRSREELKRKYKREEKANPHLIDQML 175
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. TrEMBL
Match: A0A0P5E6P1 (Transcription factor TFIIIB component B OS=Daphnia magna OX=35525 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.848e-11
Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDD-----DEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNLV 1008
             R+  DG+I++D+     D  ET       A   I+   +   ++Y   RK   +G RW+ +ET+ FY AL  + T+F+ M  +F GR R DLK+KFK EEK N  LV +I+ + +  DIS  +
Sbjct:  340 VRLGPDGEIILDERSLVIDTSETKRNKSQLANAPIIIENSSTTVNYGSWRKRPRAG-RWSVKETARFYRALNMLGTNFSLMVKLFPGRDRIDLKRKFKSEEKTNPSLVDKIIATQIPFDISQFM 462
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. TrEMBL
Match: A0A1I8G7M9 (Myb_DNA-bind_7 domain-containing protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.107e-11
Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:  658 IDLDGQIVIDDDE---DETNMQIGIEAMEEIVENAADLRMSYRD-----QRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEIL 972
            +D  G IV++++     E+   I    +EE+ E+ A+LR +YR       R     G++W+ +ET  FY A+  + TDF+ MA++FKGRSR +LK+K+K EEK N  L+ ++L
Sbjct:   74 LDSRGNIVLNEESLYIRESAPAI----VEEVREDCAELRATYRSFRNVGGRGAATRGRQWSCKETLRFYKAVSTIGTDFSYMASLFKGRSREELKRKYKREEKANPHLIDQML 182
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Cavefish
Match: si:ch211-204c21.1 (si:ch211-204c21.1 [Source:ZFIN;Acc:ZDB-GENE-030429-35])

HSP 1 Score: 53.9138 bits (128), Expect = 3.542e-7
Identity = 35/105 (33.33%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAA-----DLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNS 951
             R+  DG IV+D  E+   +++   +  + VEN++         +YR  R +    K W+  ET  F+LA+  V TDF+ +  +   RSR ++K KFK EE+ NS
Sbjct:  367 VRVAEDGSIVLD--EESLTVRVQRTSTTKAVENSSAQFEQGFTTTYRSFR-NWTHVKSWSVRETDMFFLAISMVGTDFSLIGMLLPHRSRTEIKNKFKKEERANS 468
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000053151.1 (transcription factor TFIIIB component B'' homolog [Source:NCBI gene;Acc:103025922])

HSP 1 Score: 53.5286 bits (127), Expect = 4.607e-7
Identity = 33/109 (30.28%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLR---------MSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNS 951
             ++  DG ++ID++       + +E +     N A+ R          +Y   RK   + K W+ +ET  F+LA+  V TDF+ +  +F  R+R ++K KFK EE+ NS
Sbjct:  415 VKVAEDGSLIIDEE------SLTVEVLRVKGPNPAEDRDPIFERGSTTTYSSFRKGTYT-KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKKEERANS 516
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000046411.1 (transcription factor TFIIIB component B'' homolog [Source:NCBI gene;Acc:103025922])

HSP 1 Score: 53.5286 bits (127), Expect = 4.607e-7
Identity = 33/109 (30.28%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLR---------MSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNS 951
             ++  DG ++ID++       + +E +     N A+ R          +Y   RK   + K W+ +ET  F+LA+  V TDF+ +  +F  R+R ++K KFK EE+ NS
Sbjct:  415 VKVAEDGSLIIDEE------SLTVEVLRVKGPNPAEDRDPIFERGSTTTYSSFRKGTYT-KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKKEERANS 516
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000017002.2 (transcription factor TFIIIB component B'' homolog [Source:NCBI gene;Acc:103025922])

HSP 1 Score: 53.1434 bits (126), Expect = 5.381e-7
Identity = 33/109 (30.28%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLR---------MSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNS 951
             ++  DG ++ID++       + +E +     N A+ R          +Y   RK   + K W+ +ET  F+LA+  V TDF+ +  +F  R+R ++K KFK EE+ NS
Sbjct:  415 VKVAEDGSLIIDEE------SLTVEVLRVKGPNPAEDRDPIFERGSTTTYSSFRKGTYT-KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKKEERANS 516
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007128.1 (pep scaffold:Pmarinus_7.0:GL483022:16807:23004:-1 gene:ENSPMAG00000006446.1 transcript:ENSPMAT00000007128.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 46.595 bits (109), Expect = 3.494e-6
Identity = 20/46 (43.48%), Postives = 28/46 (60.87%), Query Frame = 1 
Query:  817 AEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSK 954
              ET  F+LA+  V  DF+ +  +F  RSR D+K KFK EE+ N +
Sbjct:  127 CAETELFFLAISMVGMDFSMIGQLFPNRSRVDIKNKFKREERCNPR 172
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000003629.2 (transcription factor TFIIIB component B'' homolog [Source:NCBI gene;Acc:101173800])

HSP 1 Score: 55.8398 bits (133), Expect = 1.089e-7
Identity = 35/107 (32.71%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDEDETNMQI-------GIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNS 951
             ++  DG ++ID  E+   +++        I+  + I E  +    +Y   RK   + K W+ EET  FYLA+  V TDF+ +  +F  R+R+++K KFK EE+ NS
Sbjct:  373 VKVAEDGSLIID--EESLTVEVLRSKGPNTIQDRDPIFERGST--TTYSSFRKGTYT-KPWSIEETDMFYLAISMVGTDFSMICQLFTHRARSEIKNKFKREERENS 474
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000042388.1 (transcription factor TFIIIB component B'' homolog [Source:NCBI gene;Acc:101173800])

HSP 1 Score: 55.4546 bits (132), Expect = 1.143e-7
Identity = 35/107 (32.71%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDEDETNMQI-------GIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNS 951
             ++  DG ++ID  E+   +++        I+  + I E  +    +Y   RK   + K W+ EET  FYLA+  V TDF+ +  +F  R+R+++K KFK EE+ NS
Sbjct:  373 VKVAEDGSLIID--EESLTVEVLRSKGPNTIQDRDPIFERGST--TTYSSFRKGTYT-KPWSIEETDMFYLAISMVGTDFSMICQLFTHRARSEIKNKFKREERENS 474
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000045898.1 (transcription factor TFIIIB component B'' homolog [Source:NCBI gene;Acc:101173800])

HSP 1 Score: 55.4546 bits (132), Expect = 1.181e-7
Identity = 35/107 (32.71%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:  652 FRIDLDGQIVIDDDEDETNMQI-------GIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNS 951
             ++  DG ++ID  E+   +++        I+  + I E  +    +Y   RK   + K W+ EET  FYLA+  V TDF+ +  +F  R+R+++K KFK EE+ NS
Sbjct:  373 VKVAEDGSLIID--EESLTVEVLRSKGPNTIQDRDPIFERGST--TTYSSFRKGTYT-KPWSIEETDMFYLAISMVGTDFSMICQLFTHRARSEIKNKFKREERENS 474
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Planmine SMEST
Match: SMESG000023131.1 (SMESG000023131.1)

HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0
Identity = 351/418 (83.97%), Postives = 363/418 (86.84%), Query Frame = 1 
Query:    1 MKLKFNLNTAIKKNNSKIYDKVIKENLNNVCSTEHHFESEQCNLKFEIENLNECSLNIKLFKSETMINQLDENNIHEIPAVIDTGIVANEKQGGNLSKHQDYKRTSGNVTEQNQSAAGCETVQLLHEKNQLSTINYAPSRVNKSHTNPIRIEDEDERDPSKXXXXXXXXXXXXXXHTQPRLKKSNKRSGNNSDRNMELEQISGXXXXXXXXXXXXXXFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNLVIDSHLNPPTKHKKPRKDAVKRNLRGSTQSDSDVESVKPKPKRRYRKFDIKQAKLDPTATDLPDYLKAYEK--IMK*FTNKMS 1248
            MKLKFNLNTAIKKNN  +         NNVCSTEHHFESEQCNLKFEIENLNECSLNIKLFKSET INQLDENNIHEIPAVIDTGIVANEKQGGNLSKHQDYKRTSGNVTEQNQSAAGCETVQLLHEK QLSTINYAPSRVNKSHTNPIRI DEDERDPSKLTLLELINI+LPLPHT PRLKKSNKRSGNNSDRNMELEQISGS QQKS+DKQKSKKFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEK N + V +IL + + CDISNLVIDSHLNPPTK KKP             QS  D ES   KPKRRYRKFDIK+A LDP+A DLPDY K ++   + K F   MS
Sbjct:    1 MKLKFNLNTAIKKNNKNL---------NNVCSTEHHFESEQCNLKFEIENLNECSLNIKLFKSETTINQLDENNIHEIPAVIDTGIVANEKQGGNLSKHQDYKRTSGNVTEQNQSAAGCETVQLLHEKTQLSTINYAPSRVNKSHTNPIRIADEDERDPSKLTLLELINIDLPLPHTPPRLKKSNKRSGNNSDRNMELEQISGSSQQKSIDKQKSKKFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKANLEFVDKILEAQLDCDISNLVIDSHLNPPTKRKKPGY---------YFQSSRDEES--DKPKRRYRKFDIKKANLDPSAGDLPDYFKPFKNKLVSKSFNPNMS 398
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Planmine SMEST
Match: SMESG000023131.1 (SMESG000023131.1)

HSP 1 Score: 615.92 bits (1587), Expect = 0.000e+0
Identity = 348/404 (86.14%), Postives = 357/404 (88.37%), Query Frame = 1 
Query:    1 MKLKFNLNTAIKKNNSKIYDKVIKENLNNVCSTEHHFESEQCNLKFEIENLNECSLNIKLFKSETMINQLDENNIHEIPAVIDTGIVANEKQGGNLSKHQDYKRTSGNVTEQNQSAAGCETVQLLHEKNQLSTINYAPSRVNKSHTNPIRIEDEDERDPSKXXXXXXXXXXXXXXHTQPRLKKSNKRSGNNSDRNMELEQISGXXXXXXXXXXXXXXFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNLVIDSHLNPPTKHKKPRKDAVKRNLRGSTQSDSDVESVKPKPKRRYRKFDIKQAKLDPTATDLPDYLKAY 1212
            MKLKFNLNTAIKKNN           LNNVCSTEHHFESEQCNLKFEIENLNECSLNIKLFKSET INQLDENNIHEIPAVIDTGIVANEKQGGNLSKHQDYKRTSGNVTEQNQSAAGCETVQLLHEK QLSTINYAPSRVNKSHTNPIRI DEDERDPSKLTLLELINI+LPLPHT PRLKKSNKRSGNNSDRNMELEQISGS QQKS+DKQKSKKFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEK N + V +IL + + CDISNLVIDSHLNPPTK KKP             QS  D ES   KPKRRYRKFDIK+A LDP+A DLPDY K +
Sbjct:    1 MKLKFNLNTAIKKNNKN---------LNNVCSTEHHFESEQCNLKFEIENLNECSLNIKLFKSETTINQLDENNIHEIPAVIDTGIVANEKQGGNLSKHQDYKRTSGNVTEQNQSAAGCETVQLLHEKTQLSTINYAPSRVNKSHTNPIRIADEDERDPSKLTLLELINIDLPLPHTPPRLKKSNKRSGNNSDRNMELEQISGSSQQKSIDKQKSKKFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKANLEFVDKILEAQLDCDISNLVIDSHLNPPTKRKKPGY---------YFQSSRDEES--DKPKRRYRKFDIKKANLDPSAGDLPDYFKPF 384
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Planmine SMEST
Match: SMESG000023131.1 (SMESG000023131.1)

HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 348/404 (86.14%), Postives = 357/404 (88.37%), Query Frame = 1 
Query:    1 MKLKFNLNTAIKKNNSKIYDKVIKENLNNVCSTEHHFESEQCNLKFEIENLNECSLNIKLFKSETMINQLDENNIHEIPAVIDTGIVANEKQGGNLSKHQDYKRTSGNVTEQNQSAAGCETVQLLHEKNQLSTINYAPSRVNKSHTNPIRIEDEDERDPSKXXXXXXXXXXXXXXHTQPRLKKSNKRSGNNSDRNMELEQISGXXXXXXXXXXXXXXFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNLVIDSHLNPPTKHKKPRKDAVKRNLRGSTQSDSDVESVKPKPKRRYRKFDIKQAKLDPTATDLPDYLKAY 1212
            MKLKFNLNTAIKKNN           LNNVCSTEHHFESEQCNLKFEIENLNECSLNIKLFKSET INQLDENNIHEIPAVIDTGIVANEKQGGNLSKHQDYKRTSGNVTEQNQSAAGCETVQLLHEK QLSTINYAPSRVNKSHTNPIRI DEDERDPSKLTLLELINI+LPLPHT PRLKKSNKRSGNNSDRNMELEQISGS QQKS+DKQKSKKFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEK N + V +IL + + CDISNLVIDSHLNPPTK KKP             QS  D ES   KPKRRYRKFDIK+A LDP+A DLPDY K +
Sbjct:    1 MKLKFNLNTAIKKNNKN---------LNNVCSTEHHFESEQCNLKFEIENLNECSLNIKLFKSETTINQLDENNIHEIPAVIDTGIVANEKQGGNLSKHQDYKRTSGNVTEQNQSAAGCETVQLLHEKTQLSTINYAPSRVNKSHTNPIRIADEDERDPSKLTLLELINIDLPLPHTPPRLKKSNKRSGNNSDRNMELEQISGSSQQKSIDKQKSKKFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKANLEFVDKILEAQLDCDISNLVIDSHLNPPTKRKKPGY---------YFQSSRDEES--DKPKRRYRKFDIKKANLDPSAGDLPDYFKPF 384
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Planmine SMEST
Match: SMESG000016335.1 (SMESG000016335.1)

HSP 1 Score: 398.667 bits (1023), Expect = 1.533e-128
Identity = 223/256 (87.11%), Postives = 232/256 (90.62%), Query Frame = 1 
Query:  460 EDERDPSKXXXXXXXXXXXXXXHTQPRLKKSNKRSGNNSDRNMELEQISGXXXXXXXXXXXXXXFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNLVIDSHLNPPTKHKKPRKDAVKRNLRGSTQSDSDVESVKPKPKRRYRKFDIKQAKLDPTATDLPDYLKAYEKIMK 1227
            EDERD SKLTLLELINIE  LP  Q RL KSNKR+G++SD+N+ELE+IS S QQKS +K KSKKFRIDLDGQIVIDD+EDETNMQI  E MEEIVENAADLR SYR   K RLSGKRW AEET NFY ALL VKTDFTRMAT+FKGRSRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNLVIDSHLN PTKHKKPRKDAVKRNLRGSTQSDSDVESVKPKPKRRYRKFDIKQAKLDPTATDLPDYLKAYEKIMK
Sbjct:  765 EDERDLSKLTLLELINIEPRLPPPQSRLNKSNKRAGDSSDQNLELERISSSSQQKSANKSKSKKFRIDLDGQIVIDDEEDETNMQISTEGMEEIVENAADLRSSYRSYMKRRLSGKRWKAEETRNFYKALLAVKTDFTRMATIFKGRSRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNLVIDSHLNQPTKHKKPRKDAVKRNLRGSTQSDSDVESVKPKPKRRYRKFDIKQAKLDPTATDLPDYLKAYEKIMK 1020

HSP 2 Score: 81.2629 bits (199), Expect = 6.391e-16
Identity = 45/80 (56.25%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 MKLKFNLNTAIKKNNSKIYDKVIKENLNNVCSTEHHFESEQC--------------NLKFEIENLNECSLNIKLFKSETM 198
            MKLKFNLN AIKKNNSK  +KV++ENL+NVC+TE   ESEQC              N    I NLNEC L+IKL +SET 
Sbjct:    1 MKLKFNLNAAIKKNNSKTSEKVVEENLDNVCATEPLLESEQCILNQFSETAKKDNLNKNAAIGNLNECLLDIKLSQSETF 80
[Close]
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Planmine SMEST
Match: SMESG000016334.1 (SMESG000016334.1)

HSP 1 Score: 115.546 bits (288), Expect = 3.014e-28
Identity = 64/123 (52.03%), Postives = 79/123 (64.23%), Query Frame = 1 
Query:  655 RIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNLVIDSHL 1023
            R++  G+I   D E E+  ++G E  EEIV N+  ++ S R  RK +L  KRWN EE  NFY ALL   TDFTRMAT+  GRSR DLKKKFK EEK NS L+ +IL+  V CD S +  D HL
Sbjct:  212 RLNASGEI---DIECESINELGFE-QEEIVWNSFGIKSSSRSFRKKKLPSKRWNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCDPSTVRFDYHL 330
The following BLAST results are available for this feature:
BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
BDP11.578e-632.38B double prime 1, subunit of RNA polymerase III tr... [more]
BDP11.578e-632.38B double prime 1, subunit of RNA polymerase III tr... [more]
BDP11.633e-632.38B double prime 1, subunit of RNA polymerase III tr... [more]
BDP11.667e-632.69B double prime 1, subunit of RNA polymerase III tr... [more]
BDP11.710e-632.69B double prime 1, subunit of RNA polymerase III tr... [more]
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Bdp12.170e-1030.08gene:FBgn0032512 transcript:FBtr0080471[more]
Bdp12.442e-1030.08gene:FBgn0032512 transcript:FBtr0342639[more]
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSXETT00000044453.18.741e-833.33B double prime 1, subunit of RNA polymerase III tr... [more]
ENSXETT00000044513.11.185e-733.33B double prime 1, subunit of RNA polymerase III tr... [more]
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Bdp15.636e-732.69B double prime 1, subunit of RNA polymerase III tr... [more]
Bdp15.984e-732.69B double prime 1, subunit of RNA polymerase III tr... [more]
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 3
Match NameE-valueIdentityDescription
sp|O94481|TFC5_SCHPO3.655e-633.64Transcription factor TFIIIB component B'' OS=Schiz... [more]
sp|Q571C7|BDP1_MOUSE4.186e-632.69Transcription factor TFIIIB component B'' homolog ... [more]
sp|A6H8Y1|BDP1_HUMAN8.214e-632.69Transcription factor TFIIIB component B'' homolog ... [more]
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A165A5Q39.763e-1236.29SANT domain-containing protein OS=Daphnia magna OX... [more]
A0A1I8GWI41.225e-1143.02Myb_DNA-bind_7 domain-containing protein OS=Macros... [more]
A0A1I8GU792.130e-1143.02Myb_DNA-bind_7 domain-containing protein OS=Macros... [more]
A0A0P5E6P12.848e-1136.29Transcription factor TFIIIB component B OS=Daphnia... [more]
A0A1I8G7M93.107e-1138.05Myb_DNA-bind_7 domain-containing protein OS=Macros... [more]
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
si:ch211-204c21.13.542e-733.33si:ch211-204c21.1 [Source:ZFIN;Acc:ZDB-GENE-030429... [more]
ENSAMXT00000053151.14.607e-730.28transcription factor TFIIIB component B'' homolog ... [more]
ENSAMXT00000046411.14.607e-730.28transcription factor TFIIIB component B'' homolog ... [more]
ENSAMXT00000017002.25.381e-730.28transcription factor TFIIIB component B'' homolog ... [more]
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000007128.13.494e-643.48pep scaffold:Pmarinus_7.0:GL483022:16807:23004:-1 ... [more]
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ENSORLT00000003629.21.089e-732.71transcription factor TFIIIB component B'' homolog ... [more]
ENSORLT00000042388.11.143e-732.71transcription factor TFIIIB component B'' homolog ... [more]
ENSORLT00000045898.11.181e-732.71transcription factor TFIIIB component B'' homolog ... [more]
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BLAST of Myb_DNA-bind_7 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000023131.10.000e+083.97SMESG000023131.1[more]
SMESG000023131.10.000e+086.14SMESG000023131.1[more]
SMESG000023131.10.000e+086.14SMESG000023131.1[more]
SMESG000016335.11.533e-12887.11SMESG000016335.1[more]
SMESG000016334.13.014e-2852.03SMESG000016334.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30020405 ID=SMED30020405|Name=Myb_DNA-bind_7 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1484bp
ATGAAACTAAAATTTAATTTGAATACAGCGATTAAGAAAAATAATAGTAA
AATTTATGACAAGGTAATTAAAGAAAATTTAAATAATGTTTGCTCAACTG
AACACCACTTTGAATCCGAGCAGTGTAATTTAAAATTTGAAATAGAAAAT
TTGAATGAATGTTCATTAAATATCAAACTATTTAAATCTGAAACAATGAT
AAACCAATTGGATGAGAACAATATTCACGAAATTCCAGCGGTTATTGACA
CCGGAATAGTGGCGAATGAGAAACAAGGTGGGAATCTCTCGAAGCACCAG
GATTATAAAAGAACATCAGGAAATGTCACAGAACAAAATCAATCAGCAGC
AGGTTGTGAAACTGTCCAGCTGCTACATGAGAAAAACCAGCTCAGTACAA
TCAATTACGCGCCGAGTAGAGTCAATAAATCACACACAAATCCCATCAGA
ATTGAAGATGAAGACGAGCGAGATCCGAGCAAACTGACGCTGCTAGAGCT
GATCAATATCGAGCTCCCACTGCCTCACACGCAGCCGCGATTGAAGAAGT
CCAACAAACGGTCTGGAAATAATTCTGATCGGAATATGGAACTCGAGCAA
ATCTCTGGCAGCCGCCAACAGAAATCTGTCGACAAACAAAAATCAAAGAA
ATTCCGAATCGATCTGGACGGGCAAATTGTAATTGACGATGACGAGGACG
AGACAAACATGCAAATCGGCATTGAGGCAATGGAGGAAATTGTCGAGAAT
GCTGCTGACCTCAGAATGAGTTATCGCGACCAAAGGAAACATCGCCTTTC
AGGCAAGCGCTGGAATGCCGAGGAGACGAGCAATTTCTATCTAGCTCTTT
TGTATGTGAAAACCGATTTCACTCGCATGGCGACCGTTTTCAAAGGCAGA
AGCCGCGCTGACTTGAAGAAAAAGTTCAAAGTTGAAGAGAAACTCAATTC
GAAACTTGTCTACGAAATATTAGTGAGTCCGGTCGTGTGCGACATATCAA
ATCTAGTCATTGACTCTCACCTGAATCCGCCAACGAAACATAAAAAACCT
AGAAAGGATGCTGTTAAGAGAAATTTGCGAGGTTCCACTCAGTCGGACAG
TGATGTAGAATCCGTCAAACCAAAACCGAAGAGGCGATATAGGAAATTTG
ATATAAAACAAGCAAAGCTCGACCCGACTGCAACAGATTTGCCAGATTAT
TTAAAGGCCTATGAGAAGATAATGAAATAATTTACTAATAAAATGTCTAT
TTTTTCTCTAATTTGTTTGAAACTGATTGGTGGAATTTGCAAATTTTTTG
ACTAATCATCTGCCTGTATTTTGATTGGCTGATATGTTAAGATGTAATAG
TTGTCCAATGATGTAATAATTATCTAATAATGAAAACGTTTTTTTCAAAT
GAAATTTATCAGGCCAATCAAGTTCTTTTCTTTCGTGATATGCTTGTTTA
TTTATGCTCTACCGTGGTTGTCAATAGAAACGGC
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protein sequence of SMED30020405-orf-1

>SMED30020405-orf-1 ID=SMED30020405-orf-1|Name=SMED30020405-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=410bp
MKLKFNLNTAIKKNNSKIYDKVIKENLNNVCSTEHHFESEQCNLKFEIEN
LNECSLNIKLFKSETMINQLDENNIHEIPAVIDTGIVANEKQGGNLSKHQ
DYKRTSGNVTEQNQSAAGCETVQLLHEKNQLSTINYAPSRVNKSHTNPIR
IEDEDERDPSKLTLLELINIELPLPHTQPRLKKSNKRSGNNSDRNMELEQ
ISGSRQQKSVDKQKSKKFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVEN
AADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGR
SRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNLVIDSHLNPPTKHKKP
RKDAVKRNLRGSTQSDSDVESVKPKPKRRYRKFDIKQAKLDPTATDLPDY
LKAYEKIMK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR039467TFIIIB_B''_Myb
IPR009057Homeobox-like_sf
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0001026TFIIIB-type transcription factor activity
Vocabulary: cellular component
TermDefinition
GO:0000126transcription factor TFIIIB complex
Vocabulary: biological process
TermDefinition
GO:0006359regulation of transcription from RNA polymerase III promoter
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 241..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 352..367
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 348..367
NoneNo IPR availablePANTHERPTHR22929RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR Bcoord: 111..344
IPR039467Transcription factor TFIIIB component B'', Myb domainPFAMPF15963Myb_DNA-bind_7coord: 267..334
e-value: 1.2E-17
score: 63.6
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 255..311