PHD finger-like domain-containing protein 5A
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30020375 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 11
Homology
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Human
Match: PHF5A (PHD finger protein 5A [Source:HGNC Symbol;Acc:HGNC:18000]) HSP 1 Score: 176.792 bits (447), Expect = 3.246e-58 Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Celegans
Match: phf-5 (PHF-5; PHd Finger family [Source:UniProtKB/TrEMBL;Acc:G5EBY6]) HSP 1 Score: 174.866 bits (442), Expect = 5.506e-58 Identity = 95/109 (87.16%), Postives = 104/109 (95.41%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK PG+AIGRLCEKCDG+CVICDS+VRPCTLVRIC+ECNYGS+ GRCVICGG GVSDAYYC+ECTILEKDRDGCPKIVNLG+A+TDLFYERKK+G KK Sbjct: 1 MAKHHPDLIFCRKQPGIAIGRLCEKCDGRCVICDSHVRPCTLVRICEECNYGSYQGRCVICGGAGVSDAYYCKECTILEKDRDGCPKIVNLGSAKTDLFYERKKFGSKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Fly
Match: Phf5a (gene:FBgn0031822 transcript:FBtr0079264) HSP 1 Score: 173.711 bits (439), Expect = 2.089e-57 Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK*Y 354 MAKHH DLIFCRK PGVAIGRLCEK DGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ CTI EKDRDGCPKIVNLG+++TDLFYERKKYGFK+ Y Sbjct: 1 MAKHHPDLIFCRKQPGVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKSCTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKQNY 111
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Zebrafish
Match: phf5a (PHD finger protein 5A [Source:ZFIN;Acc:ZDB-GENE-021219-3]) HSP 1 Score: 176.792 bits (447), Expect = 2.065e-58 Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Zebrafish
Match: phf5a (PHD finger protein 5A [Source:ZFIN;Acc:ZDB-GENE-021219-3]) HSP 1 Score: 176.792 bits (447), Expect = 2.065e-58 Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Zebrafish
Match: phf5a (PHD finger protein 5A [Source:ZFIN;Acc:ZDB-GENE-021219-3]) HSP 1 Score: 152.91 bits (385), Expect = 4.001e-49 Identity = 89/109 (81.65%), Postives = 94/109 (86.24%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GV DGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVG--------DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 101
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Zebrafish
Match: phf5a (PHD finger protein 5A [Source:ZFIN;Acc:ZDB-GENE-021219-3]) HSP 1 Score: 152.91 bits (385), Expect = 4.001e-49 Identity = 89/109 (81.65%), Postives = 94/109 (86.24%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GV DGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVG--------DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 101
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Xenopus
Match: phf5a (PHD finger protein 5A [Source:NCBI gene;Acc:100170460]) HSP 1 Score: 176.792 bits (447), Expect = 2.943e-58 Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Xenopus
Match: phf5a (PHD finger protein 5A [Source:NCBI gene;Acc:100170460]) HSP 1 Score: 152.91 bits (385), Expect = 5.701e-49 Identity = 89/109 (81.65%), Postives = 94/109 (86.24%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GV DGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVG--------DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 101
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Mouse
Match: Phf5a (PHD finger protein 5A [Source:MGI Symbol;Acc:MGI:2156864]) HSP 1 Score: 176.792 bits (447), Expect = 2.229e-58 Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. UniProt/SwissProt
Match: sp|P83871|PHF5A_RAT (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Phf5a PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.559e-57 Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. UniProt/SwissProt
Match: sp|P83870|PHF5A_MOUSE (PHD finger-like domain-containing protein 5A OS=Mus musculus OX=10090 GN=Phf5a PE=1 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.559e-57 Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. UniProt/SwissProt
Match: sp|Q7RTV0|PHF5A_HUMAN (PHD finger-like domain-containing protein 5A OS=Homo sapiens OX=9606 GN=PHF5A PE=1 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.559e-57 Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. UniProt/SwissProt
Match: sp|Q0WMV8|PHF5B_ARATH (PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana OX=3702 GN=At1g07170 PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 5.209e-57 Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLI CRK PG+AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS GRCVICGGVG+SDAYYC+ECT EKDRDGCPKIVNLG+A+TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. UniProt/SwissProt
Match: sp|P0DI19|PHF5A_ARATH (PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana OX=3702 GN=At2g30000 PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 5.209e-57 Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLI CRK PG+AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS GRCVICGGVG+SDAYYC+ECT EKDRDGCPKIVNLG+A+TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. TrEMBL
Match: A0A336MUY0 (CSON001654 protein OS=Culicoides sonorensis OX=179676 GN=CSON001654 PE=4 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 5.275e-59 Identity = 98/111 (88.29%), Postives = 105/111 (94.59%), Query Frame = 1 Query: 16 F*MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 F MAKHH DLIFCRK PGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECT+ EKDRDGCPKIVNLG+++TDLFYERKKYGFK+ Sbjct: 336 FLMAKHHPDLIFCRKQPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTVQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKQ 446
BLAST of PHD finger-like domain-containing protein 5A vs. TrEMBL
Match: A0A1I7Y232 (Uncharacterized protein OS=Steinernema glaseri OX=37863 PE=4 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 9.193e-58 Identity = 98/113 (86.73%), Postives = 107/113 (94.69%), Query Frame = 1 Query: 10 SKF*MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 S F MAKHH DLIFCRK PGVAIGRLC+KCDG+CV+CDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECT++EKDRDGCPKIVNLG+A+TDLFYERKKYGFKK Sbjct: 62 SSFQMAKHHPDLIFCRKQPGVAIGRLCDKCDGRCVVCDSYVRPCTLVRICDECNYGSYQGRCVICGGQGVSDAYYCKECTLMEKDRDGCPKIVNLGSAKTDLFYERKKYGFKK 174
BLAST of PHD finger-like domain-containing protein 5A vs. TrEMBL
Match: W6V5Z6 (PHD finger-like domain-containing protein 5A OS=Echinococcus granulosus OX=6210 GN=EGR_03345 PE=4 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.734e-57 Identity = 100/109 (91.74%), Postives = 105/109 (96.33%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK PGV+IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYCRECTI+EKDRDGCPKIVNLG+A+TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQPGVSIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGTGVSDAYYCRECTIMEKDRDGCPKIVNLGSAKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. TrEMBL
Match: A0A0R3T868 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS3255 PE=4 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 2.413e-57 Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK*Y 354 MAKHH DLIFCRK PGV+IGRLCEKCDG+CVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYCRECTI+EKDRDGCPKIVNLG+A+TDLFYERKKYGFKK Y Sbjct: 1 MAKHHPDLIFCRKQPGVSIGRLCEKCDGRCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGTGVSDAYYCRECTIMEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKTY 111
BLAST of PHD finger-like domain-containing protein 5A vs. TrEMBL
Match: A0A0R3SS10 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS8025 PE=4 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 2.413e-57 Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK*Y 354 MAKHH DLIFCRK PGV+IGRLCEKCDG+CVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYCRECTI+EKDRDGCPKIVNLG+A+TDLFYERKKYGFKK Y Sbjct: 1 MAKHHPDLIFCRKQPGVSIGRLCEKCDGRCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGTGVSDAYYCRECTIMEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKTY 111
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Cavefish
Match: phf5a (PHD finger protein 5A [Source:NCBI gene;Acc:103029494]) HSP 1 Score: 176.792 bits (447), Expect = 1.750e-58 Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Cavefish
Match: phf5a (PHD finger protein 5A [Source:NCBI gene;Acc:103029494]) HSP 1 Score: 152.91 bits (385), Expect = 3.390e-49 Identity = 89/109 (81.65%), Postives = 94/109 (86.24%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GV DGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVG--------DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 101
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Cavefish
Match: phf5a (PHD finger protein 5A [Source:NCBI gene;Acc:103029494]) HSP 1 Score: 123.25 bits (308), Expect = 2.306e-37 Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKD 264 MAKHH DLIFCRK GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKD Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKD 81
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Sea Lamprey
Match: phf5a (PHD finger protein 5A [Source:ZFIN;Acc:ZDB-GENE-021219-3]) HSP 1 Score: 176.792 bits (447), Expect = 3.550e-59 Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Yeast
Match: RDS3 (Component of the SF3b subcomplex of the U2 snRNP; zinc cluster protein involved in pre-mRNA splicing and cycloheximide resistance [Source:SGD;Acc:S000006298]) HSP 1 Score: 110.153 bits (274), Expect = 3.389e-33 Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXX-XXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKK 333 M++H DLI C K PGV G LCEKCDGKC ICDSYVRP VR+C+ C++G + VGV+DA+YC EC L KD+DGCP+I+NLG+ R D +E+KK Sbjct: 1 MSRHQFDLIMCLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRLGKDKDGCPRILNLGSNRLDRHFEKKK 105
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Nematostella
Match: EDO31922 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SWK0]) HSP 1 Score: 177.178 bits (448), Expect = 4.166e-59 Identity = 97/109 (88.99%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLI CRK PGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECT+ EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIMCRKQPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTVQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Medaka
Match: phf5a (PHD finger protein 5A [Source:NCBI gene;Acc:101164511]) HSP 1 Score: 176.792 bits (447), Expect = 1.739e-58 Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHH DLIFCRK GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+ GRCVICGG GVSDAYYC+ECTI EKDRDGCPKIVNLG+++TDLFYERKKYGFKK Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKK 109
BLAST of PHD finger-like domain-containing protein 5A vs. Planmine SMEST
Match: SMESG000029843.1 (SMESG000029843.1) HSP 1 Score: 192.586 bits (488), Expect = 5.867e-65 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 Query: 22 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHXXXXXXXXXXXXSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 348 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHVGRCVICGGVGVSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK Sbjct: 1 MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSHVGRCVICGGVGVSDAYYCRECTILEKDRDGCPKIVNLGTARTDLFYERKKYGFKK 109 The following BLAST results are available for this feature:
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 4
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of PHD finger-like domain-containing protein 5A vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of PHD finger-like domain-containing protein 5A vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of PHD finger-like domain-containing protein 5A vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of PHD finger-like domain-containing protein 5A vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30020375 ID=SMED30020375|Name=PHD finger-like domain-containing protein 5A|organism=Schmidtea mediterranea sexual|type=transcript|length=365bpback to top protein sequence of SMED30020375-orf-1 >SMED30020375-orf-1 ID=SMED30020375-orf-1|Name=SMED30020375-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=110bp MAKHHADLIFCRKLPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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