U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30020180 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Human
Match: SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27 [Source:HGNC Symbol;Acc:HGNC:30240]) HSP 1 Score: 88.9669 bits (219), Expect = 3.468e-22 Identity = 40/65 (61.54%), Postives = 55/65 (84.62%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLD 510 + E+ LEGK+ EEIEM+K+MGF SF++TKGK V+G+ + Y ++ ++RKYRQYMNR+GGFNRPLD Sbjct: 88 ITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPLD 152
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Human
Match: SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27 [Source:HGNC Symbol;Acc:HGNC:30240]) HSP 1 Score: 88.9669 bits (219), Expect = 3.468e-22 Identity = 40/65 (61.54%), Postives = 55/65 (84.62%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLD 510 + E+ LEGK+ EEIEM+K+MGF SF++TKGK V+G+ + Y ++ ++RKYRQYMNR+GGFNRPLD Sbjct: 88 ITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPLD 152
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Celegans
Match: snrp-27 (Small Nuclear RibonucleoProtein homolog [Source:UniProtKB/TrEMBL;Acc:Q21739]) HSP 1 Score: 66.2402 bits (160), Expect = 5.261e-14 Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 Query: 331 SLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGNDIYVADIQKRRKYRQYMNRRGGFNRPLD 510 SL+ + +E M+ MGFG F+TTK K V N +I+K R+YRQYMNR+GGFNRPLD Sbjct: 94 SLQSGADDEA-MMAAMGFGGFDTTKNKQVNDNVDGCVNIKKPRRYRQYMNRKGGFNRPLD 152
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Fly
Match: ytr (gene:FBgn0021895 transcript:FBtr0072234) HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-23 Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGNDIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 + E LEGKSPEE+EMLK MGF +F+TTK + VEGND+ + +RKYRQYMNR+GGFNRPLD V Sbjct: 128 INEADLEGKSPEEVEMLKTMGFCTFDTTKNRKVEGNDVGEVHVILKRKYRQYMNRKGGFNRPLDFV 193
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Fly
Match: ytr (gene:FBgn0021895 transcript:FBtr0343278) HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-23 Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGNDIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 + E LEGKSPEE+EMLK MGF +F+TTK + VEGND+ + +RKYRQYMNR+GGFNRPLD V Sbjct: 128 INEADLEGKSPEEVEMLKTMGFCTFDTTKNRKVEGNDVGEVHVILKRKYRQYMNRKGGFNRPLDFV 193
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Zebrafish
Match: snrnp27 (small nuclear ribonucleoprotein 27 (U4/U6.U5) [Source:NCBI gene;Acc:436976]) HSP 1 Score: 82.4185 bits (202), Expect = 8.879e-20 Identity = 36/62 (58.06%), Postives = 51/62 (82.26%), Query Frame = 1 Query: 334 LEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 ++GK+ EEIEM+K+MGFGSF T+KGK +G+ + ++ ++RKYRQYMNR+GGFNRPLD + Sbjct: 96 MQGKTEEEIEMMKLMGFGSFETSKGKKKDGSIKAFAVNVSQKRKYRQYMNRKGGFNRPLDFI 157
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Xenopus
Match: ptcd1 (pentatricopeptide repeat domain 1 [Source:Xenbase;Acc:XB-GENE-940576]) HSP 1 Score: 68.1662 bits (165), Expect = 2.354e-14 Identity = 38/65 (58.46%), Postives = 54/65 (83.08%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLD 510 + + LEGK+ EEIEM+K+MGF +F+T+KGK V+G+ + Y ++ ++RKYRQYMNR+GGFNRPLD Sbjct: 80 IAAEDLEGKTEEEIEMMKMMGFATFDTSKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPLD 144
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Xenopus
Match: ptcd1 (pentatricopeptide repeat domain 1 [Source:Xenbase;Acc:XB-GENE-940576]) HSP 1 Score: 67.3958 bits (163), Expect = 4.869e-14 Identity = 38/67 (56.72%), Postives = 55/67 (82.09%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 + + LEGK+ EEIEM+K+MGF +F+T+KGK V+G+ + Y ++ ++RKYRQYMNR+GGFNRPLD + Sbjct: 89 IAAEDLEGKTEEEIEMMKMMGFATFDTSKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPLDFI 155
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Mouse
Match: Snrnp27 (small nuclear ribonucleoprotein 27 (U4/U6.U5) [Source:MGI Symbol;Acc:MGI:1913868]) HSP 1 Score: 88.9669 bits (219), Expect = 2.381e-22 Identity = 40/65 (61.54%), Postives = 55/65 (84.62%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLD 510 + E+ LEGK+ EEIEM+K+MGF SF++TKGK V+G+ + Y ++ ++RKYRQYMNR+GGFNRPLD Sbjct: 88 ITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPLD 152
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Mouse
Match: Snrnp27 (small nuclear ribonucleoprotein 27 (U4/U6.U5) [Source:MGI Symbol;Acc:MGI:1913868]) HSP 1 Score: 59.6918 bits (143), Expect = 6.019e-11 Identity = 27/51 (52.94%), Postives = 41/51 (80.39%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYR 468 + E+ LEGK+ EEIEM+K+MGF SF++TKGK V+G+ + Y ++ ++RKYR Sbjct: 88 ITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYAINVSQKRKYR 138
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. UniProt/SwissProt
Match: sp|Q8K194|SNR27_MOUSE (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090 GN=Snrnp27 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.665e-21 Identity = 40/65 (61.54%), Postives = 55/65 (84.62%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLD 510 + E+ LEGK+ EEIEM+K+MGF SF++TKGK V+G+ + Y ++ ++RKYRQYMNR+GGFNRPLD Sbjct: 88 ITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPLD 152
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. UniProt/SwissProt
Match: sp|Q8WVK2|SNR27_HUMAN (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP27 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.665e-21 Identity = 40/65 (61.54%), Postives = 55/65 (84.62%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLD 510 + E+ LEGK+ EEIEM+K+MGF SF++TKGK V+G+ + Y ++ ++RKYRQYMNR+GGFNRPLD Sbjct: 88 ITEEDLEGKTEEEIEMMKLMGFASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPLD 152
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. UniProt/SwissProt
Match: sp|Q6GLZ8|SNR27_XENLA (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=8355 GN=snrnp27 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.884e-20 Identity = 39/67 (58.21%), Postives = 54/67 (80.60%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 L + LEGK+ EEIEM+K+MGF SF+++KGK +G+ + Y ++ ++RKYRQYMNR+GGFNRPLD V Sbjct: 91 LAAEDLEGKTEEEIEMMKLMGFASFDSSKGKKTDGSVNAYAINVSQKRKYRQYMNRKGGFNRPLDFV 157
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. UniProt/SwissProt
Match: sp|Q6DH74|SNR27_DANRE (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio OX=7955 GN=snrnp27 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 6.703e-19 Identity = 36/62 (58.06%), Postives = 51/62 (82.26%), Query Frame = 1 Query: 334 LEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 ++GK+ EEIEM+K+MGFGSF T+KGK +G+ + ++ ++RKYRQYMNR+GGFNRPLD + Sbjct: 96 MQGKTEEEIEMMKLMGFGSFETSKGKKKDGSIKAFAVNVSQKRKYRQYMNRKGGFNRPLDFI 157
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. UniProt/SwissProt
Match: sp|Q6DDA4|SNR27_XENTR (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX=8364 GN=snrnp27 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.580e-13 Identity = 38/67 (56.72%), Postives = 55/67 (82.09%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 + + LEGK+ EEIEM+K+MGF +F+T+KGK V+G+ + Y ++ ++RKYRQYMNR+GGFNRPLD + Sbjct: 89 IAAEDLEGKTEEEIEMMKMMGFATFDTSKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFNRPLDFI 155
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. TrEMBL
Match: A0A090XEJ7 (Putative nucleic acid binding protein OS=Ixodes ricinus OX=34613 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 7.533e-22 Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGNDIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 + K LEGKS EE EM+KIMGFGSF+++KGKH+ GN++Y + +RKYRQYMNR+GGFNRPLD V Sbjct: 125 ITAKDLEGKSEEEKEMMKIMGFGSFDSSKGKHIPGNNVYAVHVIHKRKYRQYMNRKGGFNRPLDYV 190
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. TrEMBL
Match: U5EY20 (Putative yantar OS=Corethrella appendiculata OX=1370023 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 9.533e-22 Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGNDIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 L E LEGKSPEEIEM+K+MGF FNTTKGK V+GN++ + +RKYRQYMNR+GGFNRPLD V Sbjct: 85 LSEADLEGKSPEEIEMMKVMGFCDFNTTKGKKVDGNNVGQVHVILKRKYRQYMNRKGGFNRPLDFV 150
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. TrEMBL
Match: A0A4Y2KRJ4 (SNRNP27 domain-containing protein OS=Araneus ventricosus OX=182803 GN=AVEN_120879_1 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.458e-21 Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGNDIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 + +K LEGK+ EEIEM+K MGFG+F+TTKGKHV GN Y + +RKYRQYMNR+GGFNRPLD V Sbjct: 58 ITDKDLEGKTEEEIEMMKTMGFGNFDTTKGKHVPGNVAYGVHVIHKRKYRQYMNRKGGFNRPLDFV 123
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. TrEMBL
Match: A0A0K8R8R4 (Putative u4/u6.u5 tri-snrnp-associated protein OS=Ixodes ricinus OX=34613 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.546e-21 Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGNDIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 + K LEGKS EE EM+KIMGFGSF+++KGKH+ GN++Y + +RKYRQYMNR+GGFNRPLD V Sbjct: 122 ITAKDLEGKSEEEKEMMKIMGFGSFDSSKGKHIPGNNVYAVHVIHKRKYRQYMNRKGGFNRPLDYV 187
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. TrEMBL
Match: A0A443QV01 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein (Fragment) OS=Dinothrombium tinctorium OX=1965070 GN=B4U79_08356 PE=4 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.663e-21 Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGNDIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 + +K LEGKS EE +M+K+MGF +F+TTKGKHV GND++ + +RKYRQYMNR+GGFNRPLD V Sbjct: 130 ITDKDLEGKSEEEQQMMKMMGFATFDTTKGKHVPGNDVHAVHVIHKRKYRQYMNRKGGFNRPLDFV 195
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Cavefish
Match: snrnp27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27 [Source:NCBI gene;Acc:103032569]) HSP 1 Score: 87.4261 bits (215), Expect = 8.122e-22 Identity = 38/65 (58.46%), Postives = 55/65 (84.62%), Query Frame = 1 Query: 319 LYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLD 510 + + ++GK+ EEIEM+K+MGFGSFNTTKG+ V+G+ + + ++ ++RKYRQYMNR+GGFNRPLD Sbjct: 89 ISAEDMQGKTEEEIEMMKLMGFGSFNTTKGRKVDGSVNAHAINVTQKRKYRQYMNRKGGFNRPLD 153
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Cavefish
Match: snrnp27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27 [Source:NCBI gene;Acc:103032569]) HSP 1 Score: 58.151 bits (139), Expect = 1.041e-10 Identity = 25/46 (54.35%), Postives = 39/46 (84.78%), Query Frame = 1 Query: 334 LEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYR 468 ++GK+ EEIEM+K+MGFGSFNTTKG+ V+G+ + + ++ ++RKYR Sbjct: 98 MQGKTEEEIEMMKLMGFGSFNTTKGRKVDGSVNAHAINVTQKRKYR 143
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Nematostella
Match: EDO49298 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RH61]) HSP 1 Score: 75.8702 bits (185), Expect = 4.947e-18 Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 1 Query: 334 LEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLDRV 516 L+ EE M+K+MGF +F++TKGKHVEG+ ++ ++K RKYRQYMNR+GGFNRPLD V Sbjct: 81 LDDTEQEEDAMMKMMGFSNFDSTKGKHVEGSCNLSGISVKKARKYRQYMNRKGGFNRPLDYV 142
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Medaka
Match: snrnp27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27 [Source:NCBI gene;Acc:101157373]) HSP 1 Score: 81.2629 bits (199), Expect = 2.073e-19 Identity = 35/60 (58.33%), Postives = 50/60 (83.33%), Query Frame = 1 Query: 334 LEGKSPEEIEMLKIMGFGSFNTTKGKHVEGN-DIYVADIQKRRKYRQYMNRRGGFNRPLD 510 ++GK+ EEIEM+K+MGF +F++TKGK +G+ + + +I +RKYRQYMNR+GGFNRPLD Sbjct: 100 MQGKTEEEIEMMKLMGFSTFDSTKGKKTDGSVNAHAVNITLKRKYRQYMNRKGGFNRPLD 159
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Planmine SMEST
Match: SMESG000029048.1 (SMESG000029048.1) HSP 1 Score: 151.369 bits (381), Expect = 5.456e-47 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 Query: 220 LPDGRLKNYVXXXXXXXXXXXXXXXXXXXXXXXLYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGNDIYVADIQKRRKYRQYMNRRGGFNRPLDRVD 519 LPDGRLKNYVRRSSSSSSSREKEEKIANEKKNELYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGNDIYVADIQKRRKYRQYMNRRGGFNRPLDRVD Sbjct: 57 LPDGRLKNYVRRSSSSSSSREKEEKIANEKKNELYEKSLEGKSPEEIEMLKIMGFGSFNTTKGKHVEGNDIYVADIQKRRKYRQYMNRRGGFNRPLDRVD 156 The following BLAST results are available for this feature:
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30020180 ID=SMED30020180|Name=U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like protein|organism=Schmidtea mediterranea sexual|type=transcript|length=557bpback to top protein sequence of SMED30020180-orf-1 >SMED30020180-orf-1 ID=SMED30020180-orf-1|Name=SMED30020180-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=157bp MGRDRSRSAKRRHSRSRSRDRQRDKKRDRDRDRDKRKDRHRSKSASRSRRback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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