C2H2-type domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30020076 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 1
Homology
BLAST of C2H2-type domain-containing protein vs. Ensembl Fly
Match: CG31510 (gene:FBgn0051510 transcript:FBtr0084783) HSP 1 Score: 53.1434 bits (126), Expect = 1.440e-6 Identity = 46/215 (21.40%), Postives = 91/215 (42.33%), Query Frame = 3 Query: 1236 LLNNEDISKASGTFTCKLCNVTCSSQKDFK--SHLNGEKHSSKNTNEEPIALLISDEKKIVKDR----VISKPIKKPVARIQILLDQFTSP---------------------LIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYEL----VEHDPSSKA--VRMKRLEVYSDQVELFEGRKKMNIMIEKL 1781 ++ N +K S KL N T +KD L E T ++PI + S+ K ++ + V+++P++ + ++ + + +P L+G++YV + K + +++ Y C LC D +S+ +H+ Y HR Y +++ L V H P S+ + M + + +E GRK ++ E + Sbjct: 349 IVKNPLATKISCVPLAKLINSTPEREKDLVIIDDLPKEATKPPETPKKPIPVQTSNPKPVIAAKKPINVVAQPVRPTINKV--VKPSYVAPKDYTTARPGGTFESRKGHVMGLVGVEYVLKIVKTLADNNARYQCCLCEITADEQSMHNHLLGYNHRLKYFDKHFPTAMRLYRQYVSHVPESEVCKIMMPIFDKLAHAIETHHGRKNAHLCYEHV 561
BLAST of C2H2-type domain-containing protein vs. Ensembl Xenopus
Match: ssrp1 (structure specific recognition protein 1 [Source:Xenbase;Acc:XB-GENE-994294]) HSP 1 Score: 68.1662 bits (165), Expect = 1.005e-11 Identity = 58/178 (32.58%), Postives = 80/178 (44.94%), Query Frame = 3 Query: 1275 FTCKLCNVTCSSQKDFKSHLNGEKH-----SSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQF-----TSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRM----KRLEVYSDQVELFEGRKKMNI 1766 F C +C +TC+S + +SH G KH S KN E L K K + + P +P Q L D T P +GL+YV EY + ES S Y C LCN + + H+ KHR YL +++ L PS+ V+ K+L+ VE GRK +NI Sbjct: 14 FWCNICRITCASALNLQSHFMGFKHRQVEESLKNNGAEKPVL------KRKKRQFLDDP--EPAVAGQTLDDLLRACKETEPALGLEYVYEYHQDES-SYRAYECRLCNLQTGLAHMFMHVVGAKHRIAYLSKHHSTL-----GIPSTFQVKSSTKNKKLKDACFTVEKTFGRKSINI 177
BLAST of C2H2-type domain-containing protein vs. Ensembl Xenopus
Match: ssrp1 (structure specific recognition protein 1 [Source:Xenbase;Acc:XB-GENE-994294]) HSP 1 Score: 67.3958 bits (163), Expect = 1.041e-10 Identity = 58/178 (32.58%), Postives = 80/178 (44.94%), Query Frame = 3 Query: 1275 FTCKLCNVTCSSQKDFKSHLNGEKH-----SSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQF-----TSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRM----KRLEVYSDQVELFEGRKKMNI 1766 F C +C +TC+S + +SH G KH S KN E L K K + + P +P Q L D T P +GL+YV EY + ES S Y C LCN + + H+ KHR YL +++ L PS+ V+ K+L+ VE GRK +NI Sbjct: 14 FWCNICRITCASALNLQSHFMGFKHRQVEESLKNNGAEKPVL------KRKKRQFLDDP--EPAVAGQTLDDLLRACKETEPALGLEYVYEYHQDES-SYRAYECRLCNLQTGLAHMFMHVVGAKHRIAYLSKHHSTL-----GIPSTFQVKSSTKNKKLKDACFTVEKTFGRKSINI 177
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A5K4F158 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 8.781e-49 Identity = 123/370 (33.24%), Postives = 192/370 (51.89%), Query Frame = 3 Query: 693 DPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMF---VSDLQAIDMRNVRIDMDTLDLTNKF----FDKSAASEMPKEGTSVIFTDDMQSRNTTETAHSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWL----LNN-EDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNI 1766 DP A+++ YF Y + G+W W W N + I T PQW+E+F SR +GI+W++M+ VS + N M F + ++++P + DD ++ S+ +C C Q F + R F +H+RG+ H Q ++ IN +++++ + N E KH +WL LN I SG+F C+LC V S K SHLNG +H E + ++ ++K + ++ K A+IQ LD T PLIGL+Y+ EYQ +E L + Y C LCN +KS+I+H+ S HR TYL YY L+ +++ D S K+++ RLEVY+ ++E FEGRK++ I Sbjct: 190 DPNAVMKEYFDRYVKAGDWDWASWNNYLSWIARTNPQWYEIFVNLSRGLGIDWDDMYKKWVSSVSGDSSCNKNPPMSYYSCDQNFSFANYLGLGSTDIPTVCKQNVENDDYD-----DSEGSQHYCVTCKQDFGTERAFMLHIRGVTHTQRTLQSSG----------INSFDSTVLEE-NWEVKHHEWLKSQYLNGLNSIVGLSGSFYCELCEVEFPSHKALGSHLNGRRH-----RENVFIFESTGDRSLLKGKRQAQ--VKVTAKIQPFLDVCTQPLIGLNYMIEYQLQE-LDECLYICSLCNQWLPKKSVINHLCSIVHRKTYLNTYYLPLFRIIDRDYSDKSLQACRLEVYARKIEDFEGRKRLII 535
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A3R7G9E6 (C2H2-type domain-containing protein OS=Clonorchis sinensis OX=79923 GN=CSKR_1485s PE=4 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 1.455e-45 Identity = 113/368 (30.71%), Postives = 194/368 (52.72%), Query Frame = 3 Query: 693 DPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMFVSDLQAIDMRNVRIDMDTLDLTNKFFDKSAASE-----MPKEGTSVIFTDDMQSRNTTETAHSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLN-----NEDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNI 1766 +PQA+++ YF+ + E G W W W N + I T PQW+ +F E+S+++GI+W++M+ S + D LT + FD+ A S P T ++ + + + LFC C F + R F IHLRG+ HIQ ++ + ++ PE +++ + + D +H WL + N+ G+ C+LC V SS ++HL+G +H +N ++ L S +++++ S+ K AR+Q LLD T PLIGL+Y+ E Q + + YYCELC+ + R+ I+H+ HR Y+K +Y D+ +V D S +R+KR+++++ ++E FEGRK++ + Sbjct: 321 NPQAVMEEYFERFGEIGKWDWASWNNYLSWIARTNPQWYGIFLEYSQSLGIDWDQMY-SQWKQSD-----------PLTRQSFDEFADSVDGFSIQPPNLTQSVYHGLLFTETADDDDDDGLFCRTCQMRFNTDRAFSIHLRGVTHIQRALENLQRRNPE-NIDKYTEQYSQFNPDAGGA-RHYAWLQSQYMEKNKSAFIRPGSLYCELCQVGSSSFASLQAHLSGRRHR-ENVSQ----LQSSGGPNLLREKRPSQ--AKSSARLQTLLDVCTQPLIGLNYIVERQFGDD-EECMYYCELCDDRITRQDAINHVCGVAHRTHYMKAHYPDMCGIVASDQSDLDMRLKRIDLFARKIEDFEGRKRVKV 666
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A4S2LP79 (C2H2-type domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_005834 PE=4 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 1.609e-45 Identity = 110/365 (30.14%), Postives = 192/365 (52.60%), Query Frame = 3 Query: 693 DPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMFVSDLQAIDMRNVRID--MDTLDLTNKFFDKSAASEMPKEGTSVIFTDDMQSRNTTETAHSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLN-----NEDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNI 1766 +PQA+++ YF+ + E G W W W N + I T PQW+ +F E+S+++GI+W++M+ Q+ + D D++D S P T ++ + + + LFC C F + R F IHLRG+ HIQ ++ + ++ PE +++ + + D +H WL + N+ G+ C+LC V SS ++HL+G +H +N ++ L S +++++ S+ K AR+Q LLD T PLIGL+Y+ E Q + + YYCELC+ + R+ I+H+ HR Y+K +Y D+ +V D S +R+KR+++++ ++E FEGRK++ + Sbjct: 185 NPQAVMEEYFERFGEIGKWDWASWNNYLSWIARTNPQWYGIFLEYSQSLGIDWDQMYSQWKQSDPLTRQSFDEFADSVD---------GISIQPPNLTQSVYHGLLFTETADDDDDDGLFCRTCQMRFNTDRAFSIHLRGVTHIQRALENLQRRNPE-NIDKYTEQYSQFNPDAGGA-RHYAWLQSQYMEKNKSAFIRPGSLYCELCQVGSSSFASLQAHLSGRRHR-ENVSQ----LQSSSGPNLLREKRPSQ--AKSSARLQTLLDVCTQPLIGLNYIVERQFGDD-EECMYYCELCDDRITRQDAINHVCGVAHRTHYMKAHYPDMCGIVASDQSDLDMRLKRIDLFARKIEDFEGRKRVKV 530
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A5J4NLK3 (C2H2-type domain-containing protein OS=Paragonimus westermani OX=34504 GN=DEA37_0000148 PE=4 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 1.648e-45 Identity = 121/385 (31.43%), Postives = 194/385 (50.39%), Query Frame = 3 Query: 693 DPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMF----VSDLQAIDMRNVRIDMDTLDLTNKFFDK------SAASEMPKEGT-----SVIFTDDMQSRNTTETA---HSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLN-----NEDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKH----SSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNI 1766 DP+A+++ YF+ + +TG W W W N + I T PQW+ +F E+S+++GI+W++M+ +SD LT + FD S P T ++F D Q + + + FC C F + R F +HLRG+ HIQ ++ + ++ PE +++ A D N +H WL N+ G+ C+LC V SS ++HLNG +H S N++ +P +L KD+ + K AR+Q LLD T PLIGL+Y+ E Q + + Y+CELC+ + R+ I H+ S HR TY+K +Y D+ +V D SS +VR KR++ ++ ++E FEGRK++ + Sbjct: 190 DPRAVMEQYFERFGDTGKWDWASWNNYLSWIARTNPQWYTIFLEYSQSLGIDWDQMYDRWKMSD----------------PLTRQSFDDEFVGPVGVVSLQPPHLTQPVYHGLLFGDAFQLQQQDDDPIEDQNGFFCRTCMLRFDTDRAFTLHLRGVSHIQRALEALQRRNPE----HLDKYPAQQHED-NGGARHYAWLQTQYMQKNKSEFVVPGSLYCELCQVHSSSYASLQAHLNGRRHRENVSLFNSSGDPASL---------KDKQSGQ--SKVTARLQTLLDVCTQPLIGLNYIVERQFGDD-EECVYHCELCDERITRQDAIKHVCSVAHRTTYMKTHYPDMCGIVVQDCSSLSVRTKRIDFFARKIEDFEGRKRVKV 541
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A4Z2CT95 (UBP1-associated proteins 1C OS=Schistosoma japonicum OX=6182 GN=EWB00_007742 PE=4 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 1.333e-44 Identity = 125/386 (32.38%), Postives = 189/386 (48.96%), Query Frame = 3 Query: 693 DPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMFVSDLQAIDMRNVRIDMDTLDLTNKFFDKSAASE--MPKEGTSVIFTD-DMQSRNTTETA--------------------HSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWL----LNNED-ISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNI 1766 DP A+++ YF Y + G+W W W N + I T PQW+E+F SR +GI+W++M+ ++ D S + + MP T FT + TT+T +S +C C F + R F +H+RG+ H Q + Q I L + S + + N E KH +WL LN D + SG+F C+LC V S K SHLNG +H E + ++ +++ + + P+K A+IQ LD T PLIGL+Y+ EYQ +E L + Y C LCN RKS+I+H+ S HR TYL Y L+ +++ D S ++++ RLEVY+ ++E FEGRK++ I Sbjct: 167 DPNAVMKEYFDRYVKAGDWDWASWNNYLSWIARTNPQWYEIFVNLSRGLGIDWDDMYKRWASSVSG-----------------DPSCSEDVLMPHCSTGQSFTTANYFGIGTTQTTIASEQDVGNNDDGDDDDDNEYSWNYCTTCKHDFVTERAFMLHIRGVTHTQKAL-----QSNGITLFD------STVLEENWETKHHEWLKSQYLNELDTVVGLSGSFYCELCEVEFPSHKALGSHLNGRRH-----RENVFIFESTGDRSLLRGKRKT-PVKV-TAKIQPFLDVCTQPLIGLNYMIEYQLKE-LDECLYVCSLCNQWLPRKSVINHLCSIVHRKTYLNTCYLPLFRIIDRDFSDRSLQTCRLEVYARKIEDFEGRKRLVI 516
BLAST of C2H2-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008581.1 (pep scaffold:Pmarinus_7.0:GL476642:829812:835988:-1 gene:ENSPMAG00000007770.1 transcript:ENSPMAT00000008581.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 47.7506 bits (112), Expect = 3.413e-6 Identity = 34/125 (27.20%), Postives = 66/125 (52.80%), Query Frame = 3 Query: 1275 FTCKLCNVTCSSQKDFKSHLNGEKHSS-----KNTNEEPIALLISDEKKIVKDRVISKPIKKPVAR-IQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELC--NCKCDRKSIISHITSYKHR 1625 TC LCNVTC++ + FK+H+NG H+ + + +A+L++ + + +S + KP +R + + FT ++ ++K ++L+ YC +C N + RK + H++S +HR Sbjct: 36 ITCHLCNVTCANNRHFKNHMNGAMHARCMQEVQQKSSVQVAMLLAQDGSNMLSSHLS--LGKPASRWCSMCKEYFTCNVVEHRRSQMHKKAKNLTRP--YCTICRWNTRSVRK-FVEHMSSEEHR 155
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000055233.1 (SMESG000055233.1) HSP 1 Score: 1935.61 bits (5013), Expect = 0.000e+0 Identity = 1004/1016 (98.82%), Postives = 1012/1016 (99.61%), Query Frame = 3 Query: 105 MLSKVIHHFFEISKNIPKEPKSKYKTKEFQNYKFKMQEYLTSYCCHLFDICNKMNNVTEQFKEAYNNLYSDFKSYNKFLKKFKCISQFNFEHNQDDGSMSPSNPCYTNFNNDNELEDIKSNNYENNDQNINLCDENFLNNFHNKYKVIKRFIXXXXXXXXXXXXXXXXXXXXXXXXXXXEETVANNVEPVHYNNDEDPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMFVSDLQAIDMRNVRIDMDTLDLTNKFFDKSAASEMPKEGTSVIFTDDMQSRNTTETAHSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLNNEDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNIMIEKLSINSPEIISGNSKSDQTDSKGDKISFLLXXXXXXXXXIKLSVTNEAQINLEDVDREDGEIESSDDEFCCDRKSESISNQEITKSVLKQEIFTELEAGXXXXXXXXXXXXXQCEQIEADINETTFIDKSEFNNYEPLYINNRIPFCAKSIIRDNGTLEFMNHRENKKVKLKEVSEDILNHFKQEAKWALDRLKEINITKNTYHKRNFHLPPSKNPVGPVYPGVSELSNKLQHEQKKXXXXXXTENRYMSPVTEFVDTKLSSVNNSLLHDVQNMLVNKVTNDPLNEIIRQEFLFSSPSKDVDQTISSSSNENNRKSILCSPIDLKLLNETLKTVQNFTEFSSNRAEINNSSDSVMFKKTTSNLEIGKKLSKHNEFLGMDQPPPPIFPKTNPDIYYKIPQYNPMTNIMPPFLTPGMIEHQTIYPAFDRNFVYSYPSIFYSNNNSNHAPSDIFNGYDRTNL 3152 MLSKVIHHFFEISKNIPKEPKSKYKTKEFQNYKFKMQEYLTSYCCHLFDICNKMNNVTEQFKEAYNNLYSDFKSYNKFLKKFKCISQFNFEHNQDDGSMSPSNPCYTNF+NDNELEDIKSNNYENNDQNIN CDENFLNNFHNKYKVIKRFIKKEKHQVKIKKLSKSQKKKLRKKRKLREETVANN+E VHYNNDEDPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMFVSDLQAIDMRNVRIDMDTLDLTNKFFDKSAASEMPKEGTSVIFTDD+QSRNTTET+HSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLNNEDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNIMIEKLSINSPEIISGNSKSDQTDSKGDKISFLLNDEENNNDDIKLSVTNE+QINLEDVD+EDGEIESSDDEFCCDRKSESISNQEITKSVLKQEIFTELEAGEIENEIIDDDSDEQCEQIEADINETTFIDKSEFNNYEPLYINNRIPFCAK+IIRDNGTLEFMNHRENKKVKLKEVSEDILNHFKQEAKWALDRLKEINITKNTYHKRNFHLPPSKNPVGPVYPGVSELSNKLQHE+ KSSSSSSTENRYMSPVTEFVDTKLSSVNNSLLHDVQNMLVNKVTNDPLNEIIRQEFLFSSP KDVDQTISSSSNENNRKSILCSPIDLKLLNETLKTVQNFTEFSSNRAEINNSSDSVMFKKTTSNLEIGKKLSKHNEFLGMDQPPPPIFPKTNPDIYYKIPQYNPMTNIMPPFLTPGMIEHQTIYPAFDRNFVYSYPSIFYSNNNSNHAPSDIFNGYDRTNL Sbjct: 1 MLSKVIHHFFEISKNIPKEPKSKYKTKEFQNYKFKMQEYLTSYCCHLFDICNKMNNVTEQFKEAYNNLYSDFKSYNKFLKKFKCISQFNFEHNQDDGSMSPSNPCYTNFSNDNELEDIKSNNYENNDQNINSCDENFLNNFHNKYKVIKRFIKKEKHQVKIKKLSKSQKKKLRKKRKLREETVANNIELVHYNNDEDPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMFVSDLQAIDMRNVRIDMDTLDLTNKFFDKSAASEMPKEGTSVIFTDDVQSRNTTETSHSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLNNEDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNIMIEKLSINSPEIISGNSKSDQTDSKGDKISFLLNDEENNNDDIKLSVTNESQINLEDVDKEDGEIESSDDEFCCDRKSESISNQEITKSVLKQEIFTELEAGEIENEIIDDDSDEQCEQIEADINETTFIDKSEFNNYEPLYINNRIPFCAKNIIRDNGTLEFMNHRENKKVKLKEVSEDILNHFKQEAKWALDRLKEINITKNTYHKRNFHLPPSKNPVGPVYPGVSELSNKLQHEKNKSSSSSSTENRYMSPVTEFVDTKLSSVNNSLLHDVQNMLVNKVTNDPLNEIIRQEFLFSSPCKDVDQTISSSSNENNRKSILCSPIDLKLLNETLKTVQNFTEFSSNRAEINNSSDSVMFKKTTSNLEIGKKLSKHNEFLGMDQPPPPIFPKTNPDIYYKIPQYNPMTNIMPPFLTPGMIEHQTIYPAFDRNFVYSYPSIFYSNNNSNHAPSDIFNGYDRTNL 1016 The following BLAST results are available for this feature:
BLAST of C2H2-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of C2H2-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of C2H2-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of C2H2-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of C2H2-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30020076 ID=SMED30020076|Name=C2H2-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=3252bpback to top protein sequence of SMED30020076-orf-1 >SMED30020076-orf-1 ID=SMED30020076-orf-1|Name=SMED30020076-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1031bp MISNFQNDEYYTSEMLSKVIHHFFEISKNIPKEPKSKYKTKEFQNYKFKMback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|