C2H2-type domain-containing protein

Overview


Name	C2H2-type domain-containing protein
Smed ID	SMED30020076
Length (bp)	3252

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of C2H2-type domain-containing protein (SMED30020076) t-SNE clustered cells

Violin plots show distribution of expression levels for C2H2-type domain-containing protein (SMED30020076) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of C2H2-type domain-containing protein (SMED30020076) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for C2H2-type domain-containing protein (SMED30020076) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30020076

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 1

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
protonephridia	SMED30020076	SMESG000055233.1	dd_Smed_v4_14364_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

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Homology

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BLAST of C2H2-type domain-containing protein vs. Ensembl Fly
Match: CG31510 (gene:FBgn0051510 transcript:FBtr0084783)

HSP 1 Score: 53.1434 bits (126), Expect = 1.440e-6
Identity = 46/215 (21.40%), Postives = 91/215 (42.33%), Query Frame = 3

Query: 1236 LLNNEDISKASGTFTCKLCNVTCSSQKDFK--SHLNGEKHSSKNTNEEPIALLISDEKKIVKDR----VISKPIKKPVARIQILLDQFTSP---------------------LIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYEL----VEHDPSSKA--VRMKRLEVYSDQVELFEGRKKMNIMIEKL 1781
            ++ N   +K S     KL N T   +KD      L  E      T ++PI +  S+ K ++  +    V+++P++  + ++  +   + +P                     L+G++YV +  K  + +++ Y C LC    D +S+ +H+  Y HR  Y  +++     L    V H P S+   + M   +  +  +E   GRK  ++  E +
Sbjct:  349 IVKNPLATKISCVPLAKLINSTPEREKDLVIIDDLPKEATKPPETPKKPIPVQTSNPKPVIAAKKPINVVAQPVRPTINKV--VKPSYVAPKDYTTARPGGTFESRKGHVMGLVGVEYVLKIVKTLADNNARYQCCLCEITADEQSMHNHLLGYNHRLKYFDKHFPTAMRLYRQYVSHVPESEVCKIMMPIFDKLAHAIETHHGRKNAHLCYEHV 561

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BLAST of C2H2-type domain-containing protein vs. Ensembl Xenopus
Match: ssrp1 (structure specific recognition protein 1 [Source:Xenbase;Acc:XB-GENE-994294])

HSP 1 Score: 68.1662 bits (165), Expect = 1.005e-11
Identity = 58/178 (32.58%), Postives = 80/178 (44.94%), Query Frame = 3

Query: 1275 FTCKLCNVTCSSQKDFKSHLNGEKH-----SSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQF-----TSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRM----KRLEVYSDQVELFEGRKKMNI 1766
            F C +C +TC+S  + +SH  G KH     S KN   E   L      K  K + +  P  +P    Q L D       T P +GL+YV EY + ES S   Y C LCN +     +  H+   KHR  YL +++  L       PS+  V+     K+L+     VE   GRK +NI
Sbjct:   14 FWCNICRITCASALNLQSHFMGFKHRQVEESLKNNGAEKPVL------KRKKRQFLDDP--EPAVAGQTLDDLLRACKETEPALGLEYVYEYHQDES-SYRAYECRLCNLQTGLAHMFMHVVGAKHRIAYLSKHHSTL-----GIPSTFQVKSSTKNKKLKDACFTVEKTFGRKSINI 177

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BLAST of C2H2-type domain-containing protein vs. Ensembl Xenopus
Match: ssrp1 (structure specific recognition protein 1 [Source:Xenbase;Acc:XB-GENE-994294])

HSP 1 Score: 67.3958 bits (163), Expect = 1.041e-10
Identity = 58/178 (32.58%), Postives = 80/178 (44.94%), Query Frame = 3

Query: 1275 FTCKLCNVTCSSQKDFKSHLNGEKH-----SSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQF-----TSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRM----KRLEVYSDQVELFEGRKKMNI 1766
            F C +C +TC+S  + +SH  G KH     S KN   E   L      K  K + +  P  +P    Q L D       T P +GL+YV EY + ES S   Y C LCN +     +  H+   KHR  YL +++  L       PS+  V+     K+L+     VE   GRK +NI
Sbjct:   14 FWCNICRITCASALNLQSHFMGFKHRQVEESLKNNGAEKPVL------KRKKRQFLDDP--EPAVAGQTLDDLLRACKETEPALGLEYVYEYHQDES-SYRAYECRLCNLQTGLAHMFMHVVGAKHRIAYLSKHHSTL-----GIPSTFQVKSSTKNKKLKDACFTVEKTFGRKSINI 177

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BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A5K4F158 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 8.781e-49
Identity = 123/370 (33.24%), Postives = 192/370 (51.89%), Query Frame = 3

Query:  693 DPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMF---VSDLQAIDMRNVRIDMDTLDLTNKF----FDKSAASEMPKEGTSVIFTDDMQSRNTTETAHSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWL----LNN-EDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNI 1766
            DP A+++ YF  Y + G+W W  W N +  I  T PQW+E+F   SR +GI+W++M+   VS +      N    M        F    +    ++++P      +  DD       ++  S+ +C  C Q F + R F +H+RG+ H Q  ++             IN  +++++ + N E KH +WL    LN    I   SG+F C+LC V   S K   SHLNG +H      E       + ++ ++K +  ++   K  A+IQ  LD  T PLIGL+Y+ EYQ +E L +  Y C LCN    +KS+I+H+ S  HR TYL  YY  L+ +++ D S K+++  RLEVY+ ++E FEGRK++ I
Sbjct:  190 DPNAVMKEYFDRYVKAGDWDWASWNNYLSWIARTNPQWYEIFVNLSRGLGIDWDDMYKKWVSSVSGDSSCNKNPPMSYYSCDQNFSFANYLGLGSTDIPTVCKQNVENDDYD-----DSEGSQHYCVTCKQDFGTERAFMLHIRGVTHTQRTLQSSG----------INSFDSTVLEE-NWEVKHHEWLKSQYLNGLNSIVGLSGSFYCELCEVEFPSHKALGSHLNGRRH-----RENVFIFESTGDRSLLKGKRQAQ--VKVTAKIQPFLDVCTQPLIGLNYMIEYQLQE-LDECLYICSLCNQWLPKKSVINHLCSIVHRKTYLNTYYLPLFRIIDRDYSDKSLQACRLEVYARKIEDFEGRKRLII 535

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BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A3R7G9E6 (C2H2-type domain-containing protein OS=Clonorchis sinensis OX=79923 GN=CSKR_1485s PE=4 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.455e-45
Identity = 113/368 (30.71%), Postives = 194/368 (52.72%), Query Frame = 3

Query:  693 DPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMFVSDLQAIDMRNVRIDMDTLDLTNKFFDKSAASE-----MPKEGTSVIFTDDMQSRNTTETAHSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLN-----NEDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNI 1766
            +PQA+++ YF+ + E G W W  W N +  I  T PQW+ +F E+S+++GI+W++M+ S  +  D            LT + FD+ A S       P   T  ++   + +    +     LFC  C   F + R F IHLRG+ HIQ  ++ + ++ PE  +++   + +    D     +H  WL +     N+      G+  C+LC V  SS    ++HL+G +H  +N ++    L  S    +++++  S+   K  AR+Q LLD  T PLIGL+Y+ E Q  +   +  YYCELC+ +  R+  I+H+    HR  Y+K +Y D+  +V  D S   +R+KR+++++ ++E FEGRK++ +
Sbjct:  321 NPQAVMEEYFERFGEIGKWDWASWNNYLSWIARTNPQWYGIFLEYSQSLGIDWDQMY-SQWKQSD-----------PLTRQSFDEFADSVDGFSIQPPNLTQSVYHGLLFTETADDDDDDGLFCRTCQMRFNTDRAFSIHLRGVTHIQRALENLQRRNPE-NIDKYTEQYSQFNPDAGGA-RHYAWLQSQYMEKNKSAFIRPGSLYCELCQVGSSSFASLQAHLSGRRHR-ENVSQ----LQSSGGPNLLREKRPSQ--AKSSARLQTLLDVCTQPLIGLNYIVERQFGDD-EECMYYCELCDDRITRQDAINHVCGVAHRTHYMKAHYPDMCGIVASDQSDLDMRLKRIDLFARKIEDFEGRKRVKV 666

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BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A4S2LP79 (C2H2-type domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_005834 PE=4 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.609e-45
Identity = 110/365 (30.14%), Postives = 192/365 (52.60%), Query Frame = 3

Query:  693 DPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMFVSDLQAIDMRNVRID--MDTLDLTNKFFDKSAASEMPKEGTSVIFTDDMQSRNTTETAHSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLN-----NEDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNI 1766
            +PQA+++ YF+ + E G W W  W N +  I  T PQW+ +F E+S+++GI+W++M+    Q+  +     D   D++D           S  P   T  ++   + +    +     LFC  C   F + R F IHLRG+ HIQ  ++ + ++ PE  +++   + +    D     +H  WL +     N+      G+  C+LC V  SS    ++HL+G +H  +N ++    L  S    +++++  S+   K  AR+Q LLD  T PLIGL+Y+ E Q  +   +  YYCELC+ +  R+  I+H+    HR  Y+K +Y D+  +V  D S   +R+KR+++++ ++E FEGRK++ +
Sbjct:  185 NPQAVMEEYFERFGEIGKWDWASWNNYLSWIARTNPQWYGIFLEYSQSLGIDWDQMYSQWKQSDPLTRQSFDEFADSVD---------GISIQPPNLTQSVYHGLLFTETADDDDDDGLFCRTCQMRFNTDRAFSIHLRGVTHIQRALENLQRRNPE-NIDKYTEQYSQFNPDAGGA-RHYAWLQSQYMEKNKSAFIRPGSLYCELCQVGSSSFASLQAHLSGRRHR-ENVSQ----LQSSSGPNLLREKRPSQ--AKSSARLQTLLDVCTQPLIGLNYIVERQFGDD-EECMYYCELCDDRITRQDAINHVCGVAHRTHYMKAHYPDMCGIVASDQSDLDMRLKRIDLFARKIEDFEGRKRVKV 530

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BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A5J4NLK3 (C2H2-type domain-containing protein OS=Paragonimus westermani OX=34504 GN=DEA37_0000148 PE=4 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.648e-45
Identity = 121/385 (31.43%), Postives = 194/385 (50.39%), Query Frame = 3

Query:  693 DPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMF----VSDLQAIDMRNVRIDMDTLDLTNKFFDK------SAASEMPKEGT-----SVIFTDDMQSRNTTETA---HSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLN-----NEDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKH----SSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNI 1766
            DP+A+++ YF+ + +TG W W  W N +  I  T PQW+ +F E+S+++GI+W++M+    +SD                 LT + FD          S  P   T      ++F D  Q +   +      +  FC  C   F + R F +HLRG+ HIQ  ++ + ++ PE     +++  A    D N   +H  WL       N+      G+  C+LC V  SS    ++HLNG +H    S  N++ +P +L         KD+   +   K  AR+Q LLD  T PLIGL+Y+ E Q  +   +  Y+CELC+ +  R+  I H+ S  HR TY+K +Y D+  +V  D SS +VR KR++ ++ ++E FEGRK++ +
Sbjct:  190 DPRAVMEQYFERFGDTGKWDWASWNNYLSWIARTNPQWYTIFLEYSQSLGIDWDQMYDRWKMSD----------------PLTRQSFDDEFVGPVGVVSLQPPHLTQPVYHGLLFGDAFQLQQQDDDPIEDQNGFFCRTCMLRFDTDRAFTLHLRGVSHIQRALEALQRRNPE----HLDKYPAQQHED-NGGARHYAWLQTQYMQKNKSEFVVPGSLYCELCQVHSSSYASLQAHLNGRRHRENVSLFNSSGDPASL---------KDKQSGQ--SKVTARLQTLLDVCTQPLIGLNYIVERQFGDD-EECVYHCELCDERITRQDAIKHVCSVAHRTTYMKTHYPDMCGIVVQDCSSLSVRTKRIDFFARKIEDFEGRKRVKV 541

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BLAST of C2H2-type domain-containing protein vs. TrEMBL
Match: A0A4Z2CT95 (UBP1-associated proteins 1C OS=Schistosoma japonicum OX=6182 GN=EWB00_007742 PE=4 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.333e-44
Identity = 125/386 (32.38%), Postives = 189/386 (48.96%), Query Frame = 3

Query:  693 DPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMFVSDLQAIDMRNVRIDMDTLDLTNKFFDKSAASE--MPKEGTSVIFTD-DMQSRNTTETA--------------------HSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWL----LNNED-ISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNI 1766
            DP A+++ YF  Y + G+W W  W N +  I  T PQW+E+F   SR +GI+W++M+     ++                   D S + +  MP   T   FT  +     TT+T                     +S  +C  C   F + R F +H+RG+ H Q  +     Q   I L +      S + + N E KH +WL    LN  D +   SG+F C+LC V   S K   SHLNG +H      E       + ++ +++ +  + P+K   A+IQ  LD  T PLIGL+Y+ EYQ +E L +  Y C LCN    RKS+I+H+ S  HR TYL   Y  L+ +++ D S ++++  RLEVY+ ++E FEGRK++ I
Sbjct:  167 DPNAVMKEYFDRYVKAGDWDWASWNNYLSWIARTNPQWYEIFVNLSRGLGIDWDDMYKRWASSVSG-----------------DPSCSEDVLMPHCSTGQSFTTANYFGIGTTQTTIASEQDVGNNDDGDDDDDNEYSWNYCTTCKHDFVTERAFMLHIRGVTHTQKAL-----QSNGITLFD------STVLEENWETKHHEWLKSQYLNELDTVVGLSGSFYCELCEVEFPSHKALGSHLNGRRH-----RENVFIFESTGDRSLLRGKRKT-PVKV-TAKIQPFLDVCTQPLIGLNYMIEYQLKE-LDECLYVCSLCNQWLPRKSVINHLCSIVHRKTYLNTCYLPLFRIIDRDFSDRSLQTCRLEVYARKIEDFEGRKRLVI 516

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BLAST of C2H2-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008581.1 (pep scaffold:Pmarinus_7.0:GL476642:829812:835988:-1 gene:ENSPMAG00000007770.1 transcript:ENSPMAT00000008581.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 47.7506 bits (112), Expect = 3.413e-6
Identity = 34/125 (27.20%), Postives = 66/125 (52.80%), Query Frame = 3

Query: 1275 FTCKLCNVTCSSQKDFKSHLNGEKHSS-----KNTNEEPIALLISDEKKIVKDRVISKPIKKPVAR-IQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELC--NCKCDRKSIISHITSYKHR 1625
             TC LCNVTC++ + FK+H+NG  H+      +  +   +A+L++ +   +    +S  + KP +R   +  + FT  ++       ++K ++L+    YC +C  N +  RK  + H++S +HR
Sbjct:   36 ITCHLCNVTCANNRHFKNHMNGAMHARCMQEVQQKSSVQVAMLLAQDGSNMLSSHLS--LGKPASRWCSMCKEYFTCNVVEHRRSQMHKKAKNLTRP--YCTICRWNTRSVRK-FVEHMSSEEHR 155

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BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Match: SMESG000055233.1 (SMESG000055233.1)

HSP 1 Score: 1935.61 bits (5013), Expect = 0.000e+0
Identity = 1004/1016 (98.82%), Postives = 1012/1016 (99.61%), Query Frame = 3

Query:  105 MLSKVIHHFFEISKNIPKEPKSKYKTKEFQNYKFKMQEYLTSYCCHLFDICNKMNNVTEQFKEAYNNLYSDFKSYNKFLKKFKCISQFNFEHNQDDGSMSPSNPCYTNFNNDNELEDIKSNNYENNDQNINLCDENFLNNFHNKYKVIKRFIXXXXXXXXXXXXXXXXXXXXXXXXXXXEETVANNVEPVHYNNDEDPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMFVSDLQAIDMRNVRIDMDTLDLTNKFFDKSAASEMPKEGTSVIFTDDMQSRNTTETAHSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLNNEDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNIMIEKLSINSPEIISGNSKSDQTDSKGDKISFLLXXXXXXXXXIKLSVTNEAQINLEDVDREDGEIESSDDEFCCDRKSESISNQEITKSVLKQEIFTELEAGXXXXXXXXXXXXXQCEQIEADINETTFIDKSEFNNYEPLYINNRIPFCAKSIIRDNGTLEFMNHRENKKVKLKEVSEDILNHFKQEAKWALDRLKEINITKNTYHKRNFHLPPSKNPVGPVYPGVSELSNKLQHEQKKXXXXXXTENRYMSPVTEFVDTKLSSVNNSLLHDVQNMLVNKVTNDPLNEIIRQEFLFSSPSKDVDQTISSSSNENNRKSILCSPIDLKLLNETLKTVQNFTEFSSNRAEINNSSDSVMFKKTTSNLEIGKKLSKHNEFLGMDQPPPPIFPKTNPDIYYKIPQYNPMTNIMPPFLTPGMIEHQTIYPAFDRNFVYSYPSIFYSNNNSNHAPSDIFNGYDRTNL 3152
            MLSKVIHHFFEISKNIPKEPKSKYKTKEFQNYKFKMQEYLTSYCCHLFDICNKMNNVTEQFKEAYNNLYSDFKSYNKFLKKFKCISQFNFEHNQDDGSMSPSNPCYTNF+NDNELEDIKSNNYENNDQNIN CDENFLNNFHNKYKVIKRFIKKEKHQVKIKKLSKSQKKKLRKKRKLREETVANN+E VHYNNDEDPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMFVSDLQAIDMRNVRIDMDTLDLTNKFFDKSAASEMPKEGTSVIFTDD+QSRNTTET+HSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLNNEDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNIMIEKLSINSPEIISGNSKSDQTDSKGDKISFLLNDEENNNDDIKLSVTNE+QINLEDVD+EDGEIESSDDEFCCDRKSESISNQEITKSVLKQEIFTELEAGEIENEIIDDDSDEQCEQIEADINETTFIDKSEFNNYEPLYINNRIPFCAK+IIRDNGTLEFMNHRENKKVKLKEVSEDILNHFKQEAKWALDRLKEINITKNTYHKRNFHLPPSKNPVGPVYPGVSELSNKLQHE+ KSSSSSSTENRYMSPVTEFVDTKLSSVNNSLLHDVQNMLVNKVTNDPLNEIIRQEFLFSSP KDVDQTISSSSNENNRKSILCSPIDLKLLNETLKTVQNFTEFSSNRAEINNSSDSVMFKKTTSNLEIGKKLSKHNEFLGMDQPPPPIFPKTNPDIYYKIPQYNPMTNIMPPFLTPGMIEHQTIYPAFDRNFVYSYPSIFYSNNNSNHAPSDIFNGYDRTNL
Sbjct:    1 MLSKVIHHFFEISKNIPKEPKSKYKTKEFQNYKFKMQEYLTSYCCHLFDICNKMNNVTEQFKEAYNNLYSDFKSYNKFLKKFKCISQFNFEHNQDDGSMSPSNPCYTNFSNDNELEDIKSNNYENNDQNINSCDENFLNNFHNKYKVIKRFIKKEKHQVKIKKLSKSQKKKLRKKRKLREETVANNIELVHYNNDEDPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFEMFNEFSRNMGINWNEMFVSDLQAIDMRNVRIDMDTLDLTNKFFDKSAASEMPKEGTSVIFTDDVQSRNTTETSHSELFCDACNQGFRSTRYFHIHLRGIKHIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLNNEDISKASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIVKDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCELCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRLEVYSDQVELFEGRKKMNIMIEKLSINSPEIISGNSKSDQTDSKGDKISFLLNDEENNNDDIKLSVTNESQINLEDVDKEDGEIESSDDEFCCDRKSESISNQEITKSVLKQEIFTELEAGEIENEIIDDDSDEQCEQIEADINETTFIDKSEFNNYEPLYINNRIPFCAKNIIRDNGTLEFMNHRENKKVKLKEVSEDILNHFKQEAKWALDRLKEINITKNTYHKRNFHLPPSKNPVGPVYPGVSELSNKLQHEKNKSSSSSSTENRYMSPVTEFVDTKLSSVNNSLLHDVQNMLVNKVTNDPLNEIIRQEFLFSSPCKDVDQTISSSSNENNRKSILCSPIDLKLLNETLKTVQNFTEFSSNRAEINNSSDSVMFKKTTSNLEIGKKLSKHNEFLGMDQPPPPIFPKTNPDIYYKIPQYNPMTNIMPPFLTPGMIEHQTIYPAFDRNFVYSYPSIFYSNNNSNHAPSDIFNGYDRTNL 1016

The following BLAST results are available for this feature:

BLAST of C2H2-type domain-containing protein vs. Ensembl Human
BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
BLAST of C2H2-type domain-containing protein vs. Ensembl Fly
BLAST of C2H2-type domain-containing protein vs. Ensembl Zebrafish
BLAST of C2H2-type domain-containing protein vs. Ensembl Xenopus
BLAST of C2H2-type domain-containing protein vs. Ensembl Mouse
BLAST of C2H2-type domain-containing protein vs. UniProt/SwissProt
BLAST of C2H2-type domain-containing protein vs. TrEMBL
BLAST of C2H2-type domain-containing protein vs. Ensembl Cavefish
BLAST of C2H2-type domain-containing protein vs. Ensembl Sea Lamprey
BLAST of C2H2-type domain-containing protein vs. Ensembl Yeast
BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
BLAST of C2H2-type domain-containing protein vs. Ensembl Medaka
BLAST of C2H2-type domain-containing protein vs. Planmine SMEST

BLAST of C2H2-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of C2H2-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of C2H2-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1


Match Name	E-value	Identity	Description
CG31510	1.440e-6	21.40	gene:FBgn0051510 transcript:FBtr0084783	[more]

BLAST of C2H2-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of C2H2-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ssrp1	1.005e-11	32.58	structure specific recognition protein 1 [Source:X...	[more]
ssrp1	1.041e-10	32.58	structure specific recognition protein 1 [Source:X...	[more]

BLAST of C2H2-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of C2H2-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of C2H2-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A5K4F158	8.781e-49	33.24	Uncharacterized protein OS=Schistosoma mansoni OX=...	[more]
A0A3R7G9E6	1.455e-45	30.71	C2H2-type domain-containing protein OS=Clonorchis ...	[more]
A0A4S2LP79	1.609e-45	30.14	C2H2-type domain-containing protein OS=Opisthorchi...	[more]
A0A5J4NLK3	1.648e-45	31.43	C2H2-type domain-containing protein OS=Paragonimus...	[more]
A0A4Z2CT95	1.333e-44	32.38	UBP1-associated proteins 1C OS=Schistosoma japonic...	[more]

BLAST of C2H2-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of C2H2-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ENSPMAT00000008581.1	3.413e-6	27.20	pep scaffold:Pmarinus_7.0:GL476642:829812:835988:-...	[more]

BLAST of C2H2-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of C2H2-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of C2H2-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of C2H2-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1


Match Name	E-value	Identity	Description
SMESG000055233.1	0.000e+0	98.82	SMESG000055233.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30020076 ID=SMED30020076|Name=C2H2-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=3252bp
AATCGAACTGCTAAAATTCTTTTTATTTGTATATATATATCAAGTTTTGT
AGATCTAATAAAATGATAAGTAATTTTCAAAATGATGAATATTATACTAG
TGAAATGTTATCTAAAGTCATCCATCATTTTTTTGAAATTTCTAAAAATA
TACCGAAGGAACCAAAGTCCAAATACAAAACTAAGGAGTTTCAGAATTAT
AAATTCAAAATGCAAGAATATCTTACATCATATTGCTGCCATCTATTTGA
TATCTGTAATAAAATGAATAACGTCACAGAACAATTTAAAGAAGCTTATA
ATAATCTTTACAGTGATTTTAAATCTTACAACAAATTCTTAAAAAAATTT
AAATGTATAAGCCAATTCAATTTTGAACATAATCAAGATGATGGTTCTAT
GTCACCATCTAATCCATGCTACACAAATTTCAATAATGATAATGAACTGG
AAGATATTAAATCTAATAATTATGAGAATAATGATCAAAACATTAATTTA
TGCGATGAAAATTTTTTAAATAATTTTCACAATAAATATAAAGTAATAAA
ACGTTTCATAAAAAAAGAGAAACATCAAGTAAAAATCAAGAAATTATCAA
AGAGTCAGAAAAAGAAATTAAGAAAAAAACGGAAATTACGAGAAGAAACA
GTCGCAAATAATGTTGAACCAGTCCATTACAATAATGATGAAGATCCACA
AGCTATGATTCAAAATTACTTTAAATCATATACTGAAACGGGAAATTGGA
GTTGGACTGGCTGGATTAATTGCGTTCAAAAAATACAACTAACTTATCCA
CAATGGTTTGAAATGTTCAATGAATTCAGCAGAAATATGGGAATTAACTG
GAATGAAATGTTCGTGAGTGACCTTCAGGCCATCGATATGAGAAATGTTA
GAATCGATATGGATACATTGGACCTAACCAACAAATTCTTCGATAAATCA
GCAGCTAGTGAAATGCCGAAAGAGGGTACATCGGTGATATTCACTGATGA
TATGCAATCGCGCAACACCACAGAAACGGCACACTCTGAACTGTTCTGTG
ACGCCTGTAATCAAGGGTTTCGATCGACCAGATATTTTCACATTCATCTA
AGAGGCATAAAACATATTCAAAATGAAATCAAATATGTTTCTAAGCAAAA
ACCAGAAATATTCCTTGAGGAAATCAATAGAGAGAATGCATCAATAATGA
GTGATACAAATAAAGAAGATAAGCATATGAAATGGTTATTGAATAATGAA
GATATTTCCAAAGCATCTGGAACTTTTACTTGCAAGCTATGTAATGTTAC
TTGTTCATCACAAAAAGATTTTAAAAGCCATTTGAATGGTGAAAAACATT
CTAGCAAAAATACAAACGAAGAACCAATTGCATTGTTGATTTCTGATGAG
AAAAAAATCGTTAAAGATAGAGTTATTTCAAAACCCATTAAAAAACCGGT
TGCAAGAATACAGATACTTCTCGATCAATTCACTAGTCCTCTTATCGGAC
TTGATTACGTAAATGAATATCAGAAAAGAGAGTCGTTATCCGACAGCTGG
TATTATTGCGAGTTATGTAATTGTAAATGCGACAGGAAGTCTATAATTTC
TCACATTACTTCATACAAGCACAGAGCAACATATTTGAAACAATACTATT
ATGATCTCTATGAGTTGGTTGAGCACGACCCCAGTTCCAAAGCTGTTAGA
ATGAAACGATTAGAAGTTTATTCTGATCAAGTCGAATTGTTTGAAGGAAG
AAAAAAGATGAATATTATGATTGAAAAGCTATCAATTAATTCGCCTGAAA
TCATATCTGGTAATTCCAAGTCAGATCAAACGGATTCGAAGGGTGATAAA
ATCAGTTTTTTATTAAATGATGAGGAAAATAATAACGACGATATAAAACT
TTCTGTAACAAATGAAGCGCAAATAAATTTAGAAGATGTAGATAGAGAAG
ATGGTGAAATTGAATCGTCTGATGATGAATTTTGTTGTGACAGAAAATCA
GAAAGTATTTCCAATCAAGAAATTACTAAAAGTGTTTTAAAACAAGAAAT
TTTCACTGAATTAGAAGCAGGAGAAATAGAAAATGAAATTATAGATGACG
ATAGTGATGAACAGTGTGAGCAAATTGAAGCAGATATCAATGAAACCACC
TTTATCGATAAATCTGAATTCAATAATTATGAGCCCTTGTATATTAACAA
TAGAATACCATTTTGTGCCAAAAGTATAATCCGAGACAATGGAACACTTG
AGTTTATGAATCATAGAGAAAACAAAAAAGTCAAATTAAAAGAAGTAAGT
GAAGACATTCTTAATCATTTCAAGCAAGAGGCTAAATGGGCATTAGATCG
ATTGAAAGAGATTAATATTACTAAAAATACTTATCATAAAAGAAATTTTC
ACCTGCCTCCATCAAAAAATCCAGTAGGTCCGGTCTACCCGGGAGTTTCT
GAATTATCAAATAAATTACAGCACGAACAAAAGAAATCTTCATCTTCTTC
ATCCACTGAAAATAGATATATGTCACCAGTAACTGAATTTGTCGATACAA
AGTTGTCTTCAGTAAATAACAGTCTTTTACACGACGTGCAGAATATGTTA
GTCAATAAAGTAACCAATGACCCATTAAATGAAATCATAAGACAAGAATT
CCTTTTCTCATCTCCTAGTAAAGATGTTGATCAAACGATTTCTTCATCTT
CAAACGAAAACAACCGGAAATCTATTTTATGCTCACCAATTGATTTGAAG
TTGTTAAATGAAACATTGAAAACGGTTCAAAACTTTACTGAATTTTCTTC
TAATCGTGCCGAAATAAACAATTCATCAGATTCCGTTATGTTCAAGAAAA
CAACGAGTAATTTAGAAATCGGAAAGAAATTATCGAAACACAACGAATTT
CTAGGTATGGATCAGCCGCCGCCGCCAATTTTTCCAAAAACAAATCCAGA
TATTTATTACAAAATTCCGCAATATAATCCAATGACAAATATTATGCCAC
CCTTTCTTACGCCGGGAATGATTGAACATCAGACTATCTATCCTGCTTTT
GATAGAAATTTTGTGTATTCATATCCATCCATTTTCTATAGTAATAACAA
TTCTAATCATGCGCCGTCAGATATTTTCAATGGTTATGATAGGACTAACT
TATAATTTTAAATATTTGAAAAATACTTGAATCTGCATATATTTTTACGT
GTATAGTGTTTAATAAAATATTTTACTGTTTTTATGAAATACAATAATAG
AC

protein sequence of SMED30020076-orf-1

>SMED30020076-orf-1 ID=SMED30020076-orf-1|Name=SMED30020076-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1031bp
MISNFQNDEYYTSEMLSKVIHHFFEISKNIPKEPKSKYKTKEFQNYKFKM
QEYLTSYCCHLFDICNKMNNVTEQFKEAYNNLYSDFKSYNKFLKKFKCIS
QFNFEHNQDDGSMSPSNPCYTNFNNDNELEDIKSNNYENNDQNINLCDEN
FLNNFHNKYKVIKRFIKKEKHQVKIKKLSKSQKKKLRKKRKLREETVANN
VEPVHYNNDEDPQAMIQNYFKSYTETGNWSWTGWINCVQKIQLTYPQWFE
MFNEFSRNMGINWNEMFVSDLQAIDMRNVRIDMDTLDLTNKFFDKSAASE
MPKEGTSVIFTDDMQSRNTTETAHSELFCDACNQGFRSTRYFHIHLRGIK
HIQNEIKYVSKQKPEIFLEEINRENASIMSDTNKEDKHMKWLLNNEDISK
ASGTFTCKLCNVTCSSQKDFKSHLNGEKHSSKNTNEEPIALLISDEKKIV
KDRVISKPIKKPVARIQILLDQFTSPLIGLDYVNEYQKRESLSDSWYYCE
LCNCKCDRKSIISHITSYKHRATYLKQYYYDLYELVEHDPSSKAVRMKRL
EVYSDQVELFEGRKKMNIMIEKLSINSPEIISGNSKSDQTDSKGDKISFL
LNDEENNNDDIKLSVTNEAQINLEDVDREDGEIESSDDEFCCDRKSESIS
NQEITKSVLKQEIFTELEAGEIENEIIDDDSDEQCEQIEADINETTFIDK
SEFNNYEPLYINNRIPFCAKSIIRDNGTLEFMNHRENKKVKLKEVSEDIL
NHFKQEAKWALDRLKEINITKNTYHKRNFHLPPSKNPVGPVYPGVSELSN
KLQHEQKKSSSSSSTENRYMSPVTEFVDTKLSSVNNSLLHDVQNMLVNKV
TNDPLNEIIRQEFLFSSPSKDVDQTISSSSNENNRKSILCSPIDLKLLNE
TLKTVQNFTEFSSNRAEINNSSDSVMFKKTTSNLEIGKKLSKHNEFLGMD
QPPPPIFPKTNPDIYYKIPQYNPMTNIMPPFLTPGMIEHQTIYPAFDRNF
VYSYPSIFYSNNNSNHAPSDIFNGYDRTNL*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000020	protonephridia

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR036236	Znf_C2H2_sf
IPR003604	Matrin/U1-like-C_Znf_C2H2
IPR015880	Znf_C2H2-like
IPR007087	Znf_C2H2

Vocabulary: **molecular function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding
GO:0046872	metal ion binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 175..195
None	No IPR available	GENE3D	G3DSA:3.30.160.60		coord: 390..437 e-value: 3.7E-8 score: 34.7
None	No IPR available	PFAM	PF12874	zf-met	coord: 405..429 e-value: 2.2E-8 score: 34.2
None	No IPR available	PANTHER	PTHR45762	FAMILY NOT NAMED	coord: 197..656
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 402..436 e-value: 0.0036 score: 26.5 coord: 324..358 e-value: 2.3 score: 9.3 coord: 494..527 e-value: 0.18 score: 18.2
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 405..429 e-value: 0.064 score: 22.4 coord: 497..520 e-value: 73.0 score: 5.6 coord: 327..351 e-value: 6.1 score: 15.2
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 329..351
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 407..429
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	SSF57667	beta-beta-alpha zinc fingers	coord: 314..355
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	SSF57667	beta-beta-alpha zinc fingers	coord: 397..432

Main menu

C2H2-type domain-containing protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 1

Owlery

blazegraph-runner