High mobility group protein B1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30020070 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 21
Homology
BLAST of High mobility group protein B1 vs. Ensembl Human
Match: HMGB2 (high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]) HSP 1 Score: 117.087 bits (292), Expect = 9.421e-30 Identity = 65/160 (40.62%), Postives = 101/160 (63.12%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATLDKERYEKEMEQFRA-GNFVAGE 524 M++Y +FV+ R+EH+KKHP+ +F EFS KC+E+WK+M +E+ +FE++A + + K K +K +KK P PKR SAFF FC E RPK++ EHP + + A++LG +W ++ D+ YE+ A KE+YEK++ +RA G AG+ Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGK 172
BLAST of High mobility group protein B1 vs. Ensembl Human
Match: HMGB2 (high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]) HSP 1 Score: 117.087 bits (292), Expect = 9.421e-30 Identity = 65/160 (40.62%), Postives = 101/160 (63.12%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATLDKERYEKEMEQFRA-GNFVAGE 524 M++Y +FV+ R+EH+KKHP+ +F EFS KC+E+WK+M +E+ +FE++A + + K K +K +KK P PKR SAFF FC E RPK++ EHP + + A++LG +W ++ D+ YE+ A KE+YEK++ +RA G AG+ Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGK 172
BLAST of High mobility group protein B1 vs. Ensembl Human
Match: HMGB2 (high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]) HSP 1 Score: 117.087 bits (292), Expect = 9.421e-30 Identity = 65/160 (40.62%), Postives = 101/160 (63.12%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATLDKERYEKEMEQFRA-GNFVAGE 524 M++Y +FV+ R+EH+KKHP+ +F EFS KC+E+WK+M +E+ +FE++A + + K K +K +KK P PKR SAFF FC E RPK++ EHP + + A++LG +W ++ D+ YE+ A KE+YEK++ +RA G AG+ Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGK 172
BLAST of High mobility group protein B1 vs. Ensembl Human
Match: HMGB1 (high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]) HSP 1 Score: 111.694 bits (278), Expect = 1.020e-27 Identity = 67/164 (40.85%), Postives = 100/164 (60.98%), Query Frame = 3 Query: 33 MDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATLDKERYEKEMEQFRA 503 M K + M++Y +FV+ R+EH+KKHP+ +F+EFS KC+E+WK+M +E+ +FE++A E + K K K++ K P PKR SAFF FC E RPK++ EHP + +VA++LG +W A D+ YEK A KE+YEK++ +RA Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
BLAST of High mobility group protein B1 vs. Ensembl Human
Match: HMGB1 (high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]) HSP 1 Score: 111.694 bits (278), Expect = 1.020e-27 Identity = 67/164 (40.85%), Postives = 100/164 (60.98%), Query Frame = 3 Query: 33 MDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATLDKERYEKEMEQFRA 503 M K + M++Y +FV+ R+EH+KKHP+ +F+EFS KC+E+WK+M +E+ +FE++A E + K K K++ K P PKR SAFF FC E RPK++ EHP + +VA++LG +W A D+ YEK A KE+YEK++ +RA Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
BLAST of High mobility group protein B1 vs. Ensembl Celegans
Match: hmg-1.2 (High mobility group protein 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q09390]) HSP 1 Score: 116.316 bits (290), Expect = 1.066e-29 Identity = 65/175 (37.14%), Postives = 103/175 (58.86%), Query Frame = 3 Query: 72 TAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ-------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSD--RDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDN-QDDSIH 566 + Y +FVK+ +EH+KK+P E TE S KC+EKWK+M +E++RF ELA ++ ++ + + + PKRA SAFF++ ++RP+++ HPDW+V +VA+ELG++W+ +D YE+ A DK+RY EM N+ A K +D+ DD+IH Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMR-----NYKAEMQKMSGMDHYDDDNIH 219
BLAST of High mobility group protein B1 vs. Ensembl Celegans
Match: hmg-1.2 (High mobility group protein 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q09390]) HSP 1 Score: 116.316 bits (290), Expect = 1.066e-29 Identity = 65/175 (37.14%), Postives = 103/175 (58.86%), Query Frame = 3 Query: 72 TAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ-------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSD--RDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDN-QDDSIH 566 + Y +FVK+ +EH+KK+P E TE S KC+EKWK+M +E++RF ELA ++ ++ + + + PKRA SAFF++ ++RP+++ HPDW+V +VA+ELG++W+ +D YE+ A DK+RY EM N+ A K +D+ DD+IH Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMR-----NYKAEMQKMSGMDHYDDDNIH 219
BLAST of High mobility group protein B1 vs. Ensembl Celegans
Match: hmg-1.2 (High mobility group protein 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q09390]) HSP 1 Score: 116.316 bits (290), Expect = 1.418e-29 Identity = 65/177 (36.72%), Postives = 102/177 (57.63%), Query Frame = 3 Query: 72 TAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ---------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSD--RDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDN-QDDSIH 566 + Y +FVK+ +EH+KK+P E TE S KC+EKWK+M +E++RF ELA ++ ++ + + PKRA SAFF++ ++RP+++ HPDW+V +VA+ELG++W+ +D YE+ A DK+RY EM N+ A K +D+ DD+IH Sbjct: 49 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMR-----NYKAEMQKMSGMDHYDDDNIH 220
BLAST of High mobility group protein B1 vs. Ensembl Celegans
Match: hmg-1.2 (High mobility group protein 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q09390]) HSP 1 Score: 115.931 bits (289), Expect = 1.543e-29 Identity = 65/177 (36.72%), Postives = 102/177 (57.63%), Query Frame = 3 Query: 72 TAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ---------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSD--RDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDN-QDDSIH 566 + Y +FVK+ +EH+KK+P E TE S KC+EKWK+M +E++RF ELA ++ ++ + + PKRA SAFF++ ++RP+++ HPDW+V +VA+ELG++W+ +D YE+ A DK+RY EM N+ A K +D+ DD+IH Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMR-----NYKAEMQKMSGMDHYDDDNIH 221
BLAST of High mobility group protein B1 vs. Ensembl Celegans
Match: hmg-1.2 (High mobility group protein 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q09390]) HSP 1 Score: 115.931 bits (289), Expect = 1.543e-29 Identity = 65/177 (36.72%), Postives = 102/177 (57.63%), Query Frame = 3 Query: 72 TAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ---------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSD--RDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDN-QDDSIH 566 + Y +FVK+ +EH+KK+P E TE S KC+EKWK+M +E++RF ELA ++ ++ + + PKRA SAFF++ ++RP+++ HPDW+V +VA+ELG++W+ +D YE+ A DK+RY EM N+ A K +D+ DD+IH Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMR-----NYKAEMQKMSGMDHYDDDNIH 221
BLAST of High mobility group protein B1 vs. Ensembl Fly
Match: Dsp1 (gene:FBgn0278608 transcript:FBtr0089259) HSP 1 Score: 120.553 bits (301), Expect = 9.450e-30 Identity = 69/167 (41.32%), Postives = 102/167 (61.08%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ------------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRD-----RYEKMATLDKERYEKEMEQFRAGNFVA 518 MTAY YFV+ R+EH+KKHP+E F EFS KCAE+WK+M +E+KRF E+A E++ ++ + + G+ PKR+ SAFF+FC++ R KV+ +P++ V ++A+ELGR W SD D +YE MA DK RYE+EM +++ +A Sbjct: 175 MTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMA-EKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKW---SDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIA 337
BLAST of High mobility group protein B1 vs. Ensembl Fly
Match: Dsp1 (gene:FBgn0278608 transcript:FBtr0089260) HSP 1 Score: 120.553 bits (301), Expect = 9.450e-30 Identity = 69/167 (41.32%), Postives = 102/167 (61.08%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ------------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRD-----RYEKMATLDKERYEKEMEQFRAGNFVA 518 MTAY YFV+ R+EH+KKHP+E F EFS KCAE+WK+M +E+KRF E+A E++ ++ + + G+ PKR+ SAFF+FC++ R KV+ +P++ V ++A+ELGR W SD D +YE MA DK RYE+EM +++ +A Sbjct: 175 MTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMA-EKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKW---SDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIA 337
BLAST of High mobility group protein B1 vs. Ensembl Fly
Match: Dsp1 (gene:FBgn0278608 transcript:FBtr0089261) HSP 1 Score: 120.553 bits (301), Expect = 9.450e-30 Identity = 69/167 (41.32%), Postives = 102/167 (61.08%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ------------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRD-----RYEKMATLDKERYEKEMEQFRAGNFVA 518 MTAY YFV+ R+EH+KKHP+E F EFS KCAE+WK+M +E+KRF E+A E++ ++ + + G+ PKR+ SAFF+FC++ R KV+ +P++ V ++A+ELGR W SD D +YE MA DK RYE+EM +++ +A Sbjct: 175 MTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMA-EKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKW---SDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIA 337
BLAST of High mobility group protein B1 vs. Ensembl Fly
Match: Dsp1 (gene:FBgn0278608 transcript:FBtr0089262) HSP 1 Score: 120.553 bits (301), Expect = 9.599e-30 Identity = 69/167 (41.32%), Postives = 102/167 (61.08%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ------------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRD-----RYEKMATLDKERYEKEMEQFRAGNFVA 518 MTAY YFV+ R+EH+KKHP+E F EFS KCAE+WK+M +E+KRF E+A E++ ++ + + G+ PKR+ SAFF+FC++ R KV+ +P++ V ++A+ELGR W SD D +YE MA DK RYE+EM +++ +A Sbjct: 176 MTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMA-EKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKW---SDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIA 338
BLAST of High mobility group protein B1 vs. Ensembl Fly
Match: Dsp1 (gene:FBgn0278608 transcript:FBtr0339766) HSP 1 Score: 120.553 bits (301), Expect = 9.599e-30 Identity = 69/167 (41.32%), Postives = 102/167 (61.08%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ------------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRD-----RYEKMATLDKERYEKEMEQFRAGNFVA 518 MTAY YFV+ R+EH+KKHP+E F EFS KCAE+WK+M +E+KRF E+A E++ ++ + + G+ PKR+ SAFF+FC++ R KV+ +P++ V ++A+ELGR W SD D +YE MA DK RYE+EM +++ +A Sbjct: 176 MTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMA-EKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKW---SDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIA 338
BLAST of High mobility group protein B1 vs. Ensembl Zebrafish
Match: hmgb2b (high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]) HSP 1 Score: 117.472 bits (293), Expect = 5.192e-30 Identity = 66/181 (36.46%), Postives = 104/181 (57.46%), Query Frame = 3 Query: 18 MKQSQMDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ-------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDR--YEKMATLDKERYEKEMEQFRAGNFVAGETKR 533 M + ++ GK+ +AY +FV+ RDEH++K P+ +F+EFS KC+E+WKS+ ++ +FE++A + + K + G+ PKR SAFF FC E RP V+ EHP+ + E+A++LG LW S +DR +E+ A +E+YEKE+ +RAG G +KR Sbjct: 1 MVKGDVNKPKGKT-----SAYAFFVQTCRDEHKRKSPDVPVNFSEFSKKCSERWKSLNASDKVKFEDMAKADKVRYDREMKTYVPPKGVGKTGRKKKDPNAPKRPPSAFFVFCSEYRPTVKSEHPNLTIGEIAKKLGELWSKQSSKDRAPFEQKAGKLREKYEKEVAAYRAG---GGASKR 173
BLAST of High mobility group protein B1 vs. Ensembl Zebrafish
Match: hmgb2b (high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]) HSP 1 Score: 117.472 bits (293), Expect = 5.192e-30 Identity = 66/181 (36.46%), Postives = 104/181 (57.46%), Query Frame = 3 Query: 18 MKQSQMDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ-------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDR--YEKMATLDKERYEKEMEQFRAGNFVAGETKR 533 M + ++ GK+ +AY +FV+ RDEH++K P+ +F+EFS KC+E+WKS+ ++ +FE++A + + K + G+ PKR SAFF FC E RP V+ EHP+ + E+A++LG LW S +DR +E+ A +E+YEKE+ +RAG G +KR Sbjct: 1 MVKGDVNKPKGKT-----SAYAFFVQTCRDEHKRKSPDVPVNFSEFSKKCSERWKSLNASDKVKFEDMAKADKVRYDREMKTYVPPKGVGKTGRKKKDPNAPKRPPSAFFVFCSEYRPTVKSEHPNLTIGEIAKKLGELWSKQSSKDRAPFEQKAGKLREKYEKEVAAYRAG---GGASKR 173
BLAST of High mobility group protein B1 vs. Ensembl Zebrafish
Match: hmgb3b (high mobility group box 3b [Source:ZFIN;Acc:ZDB-GENE-050417-290]) HSP 1 Score: 108.997 bits (271), Expect = 3.562e-27 Identity = 57/153 (37.25%), Postives = 97/153 (63.40%), Query Frame = 3 Query: 60 KLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEE----NDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLD--KERYEKEMEQFR 500 K M+AY YFVK R+EH KK+P +F+EFS KC+E+WK+M P+E+ +FE+LA ++ + + + ++QKK P P+R S FF FC ++RP ++ ++P + +VA++LG +W SD ++ ++ D K++Y+K+M +R Sbjct: 10 KGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLAKQDKARYDQEMMHYNPGKKGRKQKKDPNAPRRPPSGFFLFCAKQRPIIKAQNPSLGIGDVAKKLGGMWNNLSDSEKQPFLSNADKLKDKYQKDMAFYR 162
BLAST of High mobility group protein B1 vs. Ensembl Zebrafish
Match: hmgb3b (high mobility group box 3b [Source:ZFIN;Acc:ZDB-GENE-050417-290]) HSP 1 Score: 108.997 bits (271), Expect = 3.562e-27 Identity = 57/153 (37.25%), Postives = 97/153 (63.40%), Query Frame = 3 Query: 60 KLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEE----NDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLD--KERYEKEMEQFR 500 K M+AY YFVK R+EH KK+P +F+EFS KC+E+WK+M P+E+ +FE+LA ++ + + + ++QKK P P+R S FF FC ++RP ++ ++P + +VA++LG +W SD ++ ++ D K++Y+K+M +R Sbjct: 10 KGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLAKQDKARYDQEMMHYNPGKKGRKQKKDPNAPRRPPSGFFLFCAKQRPIIKAQNPSLGIGDVAKKLGGMWNNLSDSEKQPFLSNADKLKDKYQKDMAFYR 162
BLAST of High mobility group protein B1 vs. Ensembl Zebrafish
Match: hmgb1a (high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]) HSP 1 Score: 108.997 bits (271), Expect = 4.047e-27 Identity = 69/164 (42.07%), Postives = 101/164 (61.59%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELAS-----EENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDR--YEKMATLDKERYEKEMEQFRA-GNFVAGETKRP 536 M++Y YFV+ R+EH+KKHPE +F+EFS KC+E+WK+M +E+ +FE++A E + K K +K++ K P PKR SAFF FC E RPKV++E P + +VA+ LG +W S ++ YEK A KE+YEK++ +R+ G G K P Sbjct: 12 MSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYEREMKNYIPPKGEKKKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEKDIAAYRSKGKVGGGAAKAP 175
BLAST of High mobility group protein B1 vs. Ensembl Xenopus
Match: cep170b (centrosomal protein 170B [Source:Xenbase;Acc:XB-GENE-5943417]) HSP 1 Score: 116.701 bits (291), Expect = 1.057e-29 Identity = 66/164 (40.24%), Postives = 99/164 (60.37%), Query Frame = 3 Query: 33 MDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATLDKERYEKEMEQFRA 503 M K + M++Y YFV+ R+EH+KKHP+ +F EFS KC+E+WK+M +E+ +FE++A E + K K K++ K P PKR SAFF FC E RPK++ EHP + ++A++LG +W A D+ YE+ A KE+YEK++ +RA Sbjct: 1 MGKGDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDMAKADKVRYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGSTIGDIAKKLGEMWNNTATDDKLPYERKAAKLKEKYEKDVAAYRA 164
BLAST of High mobility group protein B1 vs. Ensembl Xenopus
Match: hmgb2 (high mobility group box 2 [Source:NCBI gene;Acc:394499]) HSP 1 Score: 111.309 bits (277), Expect = 1.070e-27 Identity = 62/155 (40.00%), Postives = 97/155 (62.58%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEND--------XXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDR--YEKMATLDKERYEKEMEQFRA 503 M++Y YFV+ R+EH+KKHP+ +F EFS KC+E+WK+M +E+ +FEE+A +ND K K + ++KK P PKR SAFF FC E RP+++ E P + + A++LG +W + +D+ YE+ A KE+YEK++ ++A Sbjct: 13 MSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEEMA--KNDKVRYEREMKTYIPPKGEKKGKKKKDPNAPKRPPSAFFLFCSEHRPQIKSESPGLSIGDTAKKLGEMWSEQTPKDKLPYEQKAAKLKEKYEKDVAAYKA 165
BLAST of High mobility group protein B1 vs. Ensembl Xenopus
Match: hmgb3 (high mobility group box 3 [Source:NCBI gene;Acc:448228]) HSP 1 Score: 107.457 bits (267), Expect = 2.274e-26 Identity = 60/163 (36.81%), Postives = 97/163 (59.51%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN---DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDR--YEKMATLDKERYEKEMEQFRAGNFVAGETKRPKL 542 M+AY YFV+ R+EH+KK+PE +F EFS KC+E+WK+M +E+ +F++LA + D++ + ++KK P PKR S FF FC E RPK++ +P + +VA++LG +W +D ++ Y A KE+YEK++ +++ PKL Sbjct: 13 MSAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWKTMSAKEKSKFDDLAKADKVRYDREMKDFGPVKKGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDCAKGAPKL 175
BLAST of High mobility group protein B1 vs. Ensembl Xenopus
Match: hmgb3 (high mobility group box 3 [Source:NCBI gene;Acc:448228]) HSP 1 Score: 104.375 bits (259), Expect = 1.623e-25 Identity = 57/143 (39.86%), Postives = 89/143 (62.24%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN---DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDR--YEKMATLDKERYEK 482 M+AY YFV+ R+EH+KK+PE +F EFS KC+E+WK+M +E+ +F++LA + D++ + ++KK P PKR S FF FC E RPK++ +P + +VA++LG +W +D ++ Y A KE+YEK Sbjct: 13 MSAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWKTMSAKEKSKFDDLAKADKVRYDREMKDFGPVKKGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDGEKQPYNNKAAKLKEKYEK 155
BLAST of High mobility group protein B1 vs. Ensembl Mouse
Match: Hmgb2 (high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157]) HSP 1 Score: 117.472 bits (293), Expect = 5.106e-30 Identity = 66/160 (41.25%), Postives = 101/160 (63.12%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATLDKERYEKEMEQFRA-GNFVAGE 524 M++Y +FV+ R+EH+KKHP+ +F EFS KC+E+WK+M +E+ +FE+LA + + K K +K +KK P PKR SAFF FC E RPK++ EHP + + A++LG +W ++ D+ YE+ A KE+YEK++ +RA G AG+ Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGK 172
BLAST of High mobility group protein B1 vs. Ensembl Mouse
Match: Hmgb1 (high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113]) HSP 1 Score: 113.62 bits (283), Expect = 1.063e-28 Identity = 68/167 (40.72%), Postives = 101/167 (60.48%), Query Frame = 3 Query: 24 QSQMDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATLDKERYEKEMEQFRA 503 Q M K + M++Y +FV+ R+EH+KKHP+ +F+EFS KC+E+WK+M +E+ +FE++A E + K K K++ K P PKR SAFF FC E RPK++ EHP + +VA++LG +W A D+ YEK A KE+YEK++ +RA Sbjct: 12 QLNMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 178
BLAST of High mobility group protein B1 vs. Ensembl Mouse
Match: Hmgb1 (high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113]) HSP 1 Score: 111.694 bits (278), Expect = 7.006e-28 Identity = 67/164 (40.85%), Postives = 100/164 (60.98%), Query Frame = 3 Query: 33 MDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATLDKERYEKEMEQFRA 503 M K + M++Y +FV+ R+EH+KKHP+ +F+EFS KC+E+WK+M +E+ +FE++A E + K K K++ K P PKR SAFF FC E RPK++ EHP + +VA++LG +W A D+ YEK A KE+YEK++ +RA Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
BLAST of High mobility group protein B1 vs. Ensembl Mouse
Match: Hmgb1 (high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113]) HSP 1 Score: 111.694 bits (278), Expect = 7.006e-28 Identity = 67/164 (40.85%), Postives = 100/164 (60.98%), Query Frame = 3 Query: 33 MDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATLDKERYEKEMEQFRA 503 M K + M++Y +FV+ R+EH+KKHP+ +F+EFS KC+E+WK+M +E+ +FE++A E + K K K++ K P PKR SAFF FC E RPK++ EHP + +VA++LG +W A D+ YEK A KE+YEK++ +RA Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
BLAST of High mobility group protein B1 vs. Ensembl Mouse
Match: Hmgb1 (high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113]) HSP 1 Score: 111.694 bits (278), Expect = 7.006e-28 Identity = 67/164 (40.85%), Postives = 100/164 (60.98%), Query Frame = 3 Query: 33 MDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATLDKERYEKEMEQFRA 503 M K + M++Y +FV+ R+EH+KKHP+ +F+EFS KC+E+WK+M +E+ +FE++A E + K K K++ K P PKR SAFF FC E RPK++ EHP + +VA++LG +W A D+ YEK A KE+YEK++ +RA Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
BLAST of High mobility group protein B1 vs. UniProt/SwissProt
Match: sp|P52925|HMGB2_RAT (High mobility group protein B2 OS=Rattus norvegicus OX=10116 GN=Hmgb2 PE=2 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 2.692e-29 Identity = 63/152 (41.45%), Postives = 97/152 (63.82%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATLDKERYEKEMEQFRA 503 M++Y +FV+ R+EH+KKHP+ +F EFS KC+E+WK+M +E+ +FE+LA + + K K +K +KK P PKR SAFF FC E RPK++ EHP + + A++LG +W ++ D+ YE+ A KE+YEK++ +RA Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRA 164
BLAST of High mobility group protein B1 vs. UniProt/SwissProt
Match: sp|P30681|HMGB2_MOUSE (High mobility group protein B2 OS=Mus musculus OX=10090 GN=Hmgb2 PE=1 SV=3) HSP 1 Score: 117.472 bits (293), Expect = 3.572e-29 Identity = 66/160 (41.25%), Postives = 101/160 (63.12%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATLDKERYEKEMEQFRA-GNFVAGE 524 M++Y +FV+ R+EH+KKHP+ +F EFS KC+E+WK+M +E+ +FE+LA + + K K +K +KK P PKR SAFF FC E RPK++ EHP + + A++LG +W ++ D+ YE+ A KE+YEK++ +RA G AG+ Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGK 172
BLAST of High mobility group protein B1 vs. UniProt/SwissProt
Match: sp|P26583|HMGB2_HUMAN (High mobility group protein B2 OS=Homo sapiens OX=9606 GN=HMGB2 PE=1 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 4.524e-29 Identity = 65/160 (40.62%), Postives = 101/160 (63.12%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATLDKERYEKEMEQFRA-GNFVAGE 524 M++Y +FV+ R+EH+KKHP+ +F EFS KC+E+WK+M +E+ +FE++A + + K K +K +KK P PKR SAFF FC E RPK++ EHP + + A++LG +W ++ D+ YE+ A KE+YEK++ +RA G AG+ Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGK 172
BLAST of High mobility group protein B1 vs. UniProt/SwissProt
Match: sp|P40673|HMGB2_BOVIN (High mobility group protein B2 OS=Bos taurus OX=9913 GN=HMGB2 PE=1 SV=3) HSP 1 Score: 117.087 bits (292), Expect = 4.524e-29 Identity = 65/160 (40.62%), Postives = 101/160 (63.12%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATLDKERYEKEMEQFRA-GNFVAGE 524 M++Y +FV+ R+EH+KKHP+ +F EFS KC+E+WK+M +E+ +FE++A + + K K +K +KK P PKR SAFF FC E RPK++ EHP + + A++LG +W ++ D+ YE+ A KE+YEK++ +RA G AG+ Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGK 172
BLAST of High mobility group protein B1 vs. UniProt/SwissProt
Match: sp|P26584|HMGB2_CHICK (High mobility group protein B2 OS=Gallus gallus OX=9031 GN=HMGB2 PE=2 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 1.189e-28 Identity = 63/152 (41.45%), Postives = 96/152 (63.16%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLW--EACSDRDRYEKMATLDKERYEKEMEQFRA 503 M++Y YFV+ R+EH+KKHP+ +F EFS KC+E+WK+M +E+ +FEE+A + + K K +K +KK P PKR SAFF FC E RPK++ +HP + + A++LG +W + D+ YE+ A KE+YEK++ +RA Sbjct: 13 MSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYDREMKNYVPPKGEKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEKDIAAYRA 164
BLAST of High mobility group protein B1 vs. TrEMBL
Match: A0A267H111 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig018661g1 PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 8.060e-49 Identity = 96/175 (54.86%), Postives = 125/175 (71.43%), Query Frame = 3 Query: 60 KLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELAS--------EENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDNQDDS 560 K AMTAY FV++IR+EHRKKHP+E F+EFS KCAEKWK+M P+E+KRFE++A+ E D P K ++++ K P PKR SAFF+FC+E RPKVR +PDWRV+EVA+ELGR WEAC +R RYE+ A DK RYE++M+Q++AG FVA +KR K D D+ Sbjct: 9 KGAMTAYACFVQVIREEHRKKHPDETVVFSEFSKKCAEKWKTMNPKEKKRFEDMAARDKERHNREMEDYVPADGSKGRKRKRVKDPNMPKRPLSAFFFFCEEERPKVRASNPDWRVSEVAKELGRRWEACKNRPRYEQQAARDKLRYEEDMKQYKAGTFVA--SKRAKADATGDN 181
BLAST of High mobility group protein B1 vs. TrEMBL
Match: A0A267H2Y9 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015935g1 PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 9.003e-49 Identity = 96/175 (54.86%), Postives = 125/175 (71.43%), Query Frame = 3 Query: 60 KLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELAS--------EENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDNQDDS 560 K AMTAY FV++IR+EHRKKHP+E F+EFS KCAEKWK+M P+E+KRFE++A+ E D P K ++++ K P PKR SAFF+FC+E RPKVR +PDWRV+EVA+ELGR WEAC +R RYE+ A DK RYE++M+Q++AG FVA +KR K D D+ Sbjct: 15 KGAMTAYACFVQVIREEHRKKHPDETVVFSEFSKKCAEKWKTMNPKEKKRFEDMAARDKERHNREMEDYVPADGSKGRKRKRVKDPNMPKRPLSAFFFFCEEERPKVRASNPDWRVSEVAKELGRRWEACKNRPRYEQQAARDKLRYEEDMKQYKAGTFVA--SKRAKADATGDN 187
BLAST of High mobility group protein B1 vs. TrEMBL
Match: A0A267EBY1 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig025073g1 PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.147e-48 Identity = 96/175 (54.86%), Postives = 125/175 (71.43%), Query Frame = 3 Query: 60 KLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELAS--------EENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDNQDDS 560 K AMTAY FV++IR+EHRKKHP+E F+EFS KCAEKWK+M P+E+KRFE++A+ E D P K ++++ K P PKR SAFF+FC+E RPKVR +PDWRV+EVA+ELGR WEAC +R RYE+ A DK RYE++M+Q++AG FVA +KR K D D+ Sbjct: 16 KGAMTAYACFVQVIREEHRKKHPDETVVFSEFSKKCAEKWKTMNPKEKKRFEDMAARDKERHNREMEDYVPADGSKGRKRKRVKDPNMPKRPLSAFFFFCEEERPKVRASNPDWRVSEVAKELGRRWEACKNRPRYEQQAARDKLRYEEDMKQYKAGTFVA--SKRAKADATGDN 188
BLAST of High mobility group protein B1 vs. TrEMBL
Match: A0A1I8IAE5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=3 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 1.180e-48 Identity = 96/175 (54.86%), Postives = 125/175 (71.43%), Query Frame = 3 Query: 60 KLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELAS--------EENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDNQDDS 560 K AMTAY FV++IR+EHRKKHP+E F+EFS KCAEKWK+M P+E+KRFE++A+ E D P K ++++ K P PKR SAFF+FC+E RPKVR +PDWRV+EVA+ELGR WEAC +R RYE+ A DK RYE++M+Q++AG FVA +KR K D D+ Sbjct: 892 KGAMTAYACFVQVIREEHRKKHPDETVVFSEFSKKCAEKWKTMNPKEKKRFEDMAARDKERHNREMEDYVPADGSKGRKRKRVKDPNMPKRPLSAFFFFCEEERPKVRASNPDWRVSEVAKELGRRWEACKNRPRYEQQAARDKLRYEEDMKQYKAGTFVA--SKRAKADATGDN 1064
BLAST of High mobility group protein B1 vs. TrEMBL
Match: A0A1I8IJA4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030660g2 PE=4 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.388e-47 Identity = 94/168 (55.95%), Postives = 119/168 (70.83%), Query Frame = 3 Query: 60 KLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELAS--------EENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPK 539 K M+AY FV++IR+EH+KKHPEE F EFS KCAEKWK+M P+E+KRFE++AS E +D P K ++++ K P PKRA +AFF F DE R K+R EHPDWRV+EVA+ELGR+WEAC+DR +YE A DK+RYE EM Q+R G FV TKRP+ Sbjct: 9 KGPMSAYACFVQVIREEHKKKHPEESVVFAEFSKKCAEKWKTMNPKEKKRFEDMASRDKERYNREMDDYVPADGSKGKKRKKPKDPNMPKRALTAFFLFSDEHRQKIRDEHPDWRVSEVAKELGRMWEACTDRPKYEAAAVRDKQRYEDEMNQYRQGTFVP--TKRPR 174
BLAST of High mobility group protein B1 vs. Ensembl Cavefish
Match: ENSAMXT00000044228.1 (high mobility group protein B2-like [Source:NCBI gene;Acc:103034313]) HSP 1 Score: 117.857 bits (294), Expect = 2.512e-30 Identity = 67/158 (42.41%), Postives = 95/158 (60.13%), Query Frame = 3 Query: 72 TAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELAS-------EENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDR--YEKMATLDKERYEKEMEQFRAGNFVA 518 +AY +FV RDE +KK P +F +FS KC+E WK++ P E+K+FE+LA EE P + R+KK P PKR SAFF FC E RP V+ EHP+ + E+A++LG W S +DR +++ A L +E+YEKE+ +R+G VA Sbjct: 13 SAYAFFVLSSRDELKKKSPGTSVNFGKFSKKCSEDWKALTPSEKKKFEDLAKADKARYDEEMKSYVPPKGMGKMGRKKKDPNAPKRPPSAFFIFCSEHRPAVKSEHPNLTIGEIAKKLGEKWSKLSTKDRSPFDQKAVLLREKYEKEVAAYRSGGSVA 170
BLAST of High mobility group protein B1 vs. Ensembl Cavefish
Match: hmgb2a (high mobility group box 2 [Source:NCBI gene;Acc:111195933]) HSP 1 Score: 117.087 bits (292), Expect = 4.989e-30 Identity = 66/155 (42.58%), Postives = 98/155 (63.23%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEND--------XXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDR--YEKMATLDKERYEKEMEQFRA 503 ++Y +FV+ R+EH+KKHP +F EFS KCAE+WK+M P+E+ +FE+LA +ND K K + ++KK P PKR SAFF FC + RPKV+ EHP + ++A++LG +W S +D+ YE+ A KE+YEK++ +RA Sbjct: 12 TSSYAFFVQTCREEHKKKHPGTSVNFAEFSKKCAERWKTMSPKEKTKFEDLA--KNDKVRYDREMKTYIPPKGAKKGKKKKDPNAPKRPPSAFFVFCSDHRPKVKSEHPGISIGDIAKKLGEMWSKQSPKDKAPYEQKAMKLKEKYEKDVAAYRA 164
BLAST of High mobility group protein B1 vs. Ensembl Cavefish
Match: hmgb1a (high mobility group-T protein-like [Source:NCBI gene;Acc:103039534]) HSP 1 Score: 114.775 bits (286), Expect = 2.657e-29 Identity = 69/163 (42.33%), Postives = 102/163 (62.58%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEEL-----ASEENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACS--DRDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRP 536 M++Y YFV+ R+EH+KKHP+ +F+EFS KC+E+WK+M +E+ +FEE+ A E + K + +K++ K P PKR SAFF FC E RPKV++E P + +VA++LG +W S ++ YEK A KE+YEK++ +R G V G K P Sbjct: 12 MSSYAYFVQTCREEHKKKHPDTSVNFSEFSKKCSERWKTMSAKEKGKFEEMARLDKARYEREMKNYVPPRGEKKKRFKDPNAPKRPPSAFFIFCAEYRPKVKEETPGLSIGDVAKKLGEMWNKTSAEEKQPYEKKAAKLKEKYEKDIAAYRKGKVVGGAAKAP 174
BLAST of High mobility group protein B1 vs. Ensembl Cavefish
Match: hmgb1b (high mobility group protein B1-like [Source:NCBI gene;Acc:103041093]) HSP 1 Score: 111.694 bits (278), Expect = 2.983e-28 Identity = 66/162 (40.74%), Postives = 105/162 (64.81%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSD--RDRYEKMATLDKERYEKEMEQFRAGNFVAGETKR 533 M++Y YFV+ R+EH+KKHPE +F+EFS KC+E+WK+M P+E+ +FE++A + E + K K +K++ K P PKR SAFF FC + RPK++ E+P + ++A++LG +W + S + YEK A KE+Y+K++ +R VAG +K+ Sbjct: 12 MSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSPKEKSKFEDMAKQDKVRYEREMKNYIPPKGEKKKRFKDPNAPKRPPSAFFIFCGDYRPKIKGENPGLSIGDIAKKLGEMWNSSSPEVKQPYEKKAAKLKEKYDKDIAVYRTKG-VAGLSKK 172
BLAST of High mobility group protein B1 vs. Ensembl Cavefish
Match: hmgb3a (high mobility group protein B3 [Source:NCBI gene;Acc:103036962]) HSP 1 Score: 99.3673 bits (246), Expect = 1.161e-23 Identity = 53/165 (32.12%), Postives = 96/165 (58.18%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXX-XXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSD--RDRYEKMATLDKERYEKEMEQFRA----GNFVAGETKRPKL 542 M+AY YFV+ R+EH+ K PE +F EFS KC+ +WK+M +E+ RFE++A ++ + ++ +KK P PKR S FF FC + RPK++ ++P + EVA++LG +W +D + Y + K++Y++++ +++ + + G +P + Sbjct: 13 MSAYAYFVQTCREEHKLKSPEIPVNFAEFSKKCSVRWKAMSGKEKTRFEDMAKQDKVRYDQEMMHYTGKRGKKKDPNAPKRPPSGFFIFCSDHRPKIKAQYPHMGIGEVAKKLGEMWNNLTDAHKQPYVMKSNKLKDKYQQDIADYKSKGKVSSIMMGMAPKPMM 177
BLAST of High mobility group protein B1 vs. Ensembl Sea Lamprey
Match: hmgb2a (high mobility group box 2a [Source:ZFIN;Acc:ZDB-GENE-051120-126]) HSP 1 Score: 115.546 bits (288), Expect = 2.310e-30 Identity = 66/150 (44.00%), Postives = 94/150 (62.67%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN---DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACS--DRDRYEKMATLDKERYEKEMEQFRA 503 M++Y YFV+ R+EH+KKHPE +F EFS KC+E+WK+M P+E+ RFEE+A + D++ KR+ K P PKR SAFF FC E RPKV+ +HP + E+A+ LG +W + + YEK A KE+YEK++ +R Sbjct: 13 MSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSPKEKARFEEMAKADKARFDREMKNYVPPKGKRKTKDPNAPKRPPSAFFVFCSEHRPKVKADHPGLGIGEIAKRLGEMWGLLTPETKSPYEKKAAKLKEKYEKDVAAYRG 162
BLAST of High mobility group protein B1 vs. Ensembl Sea Lamprey
Match: hmgb2b (high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]) HSP 1 Score: 103.605 bits (257), Expect = 7.005e-26 Identity = 61/159 (38.36%), Postives = 93/159 (58.49%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQ--------PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATLDKERYEKEMEQFRAGNFV 515 M++Y YFV+ R+EH+KK+PE +F EFS KC+E+WK+M +E+ RFE++A + DK R+ +T K G PKR SAFF +C E R KVR E+P + +A++LG +W ++ YE+ KE+Y+K+M +R+ V Sbjct: 13 MSSYAYFVQTCREEHKKKNPEASVNFAEFSKKCSERWKTMSEKEKTRFEDMA--KVDKVRYDREMKTYVPPKGERGSRKKKDPNAPKRPPSAFFIYCAEYRSKVRAENPGLTIGSIAKKLGEMWNNAPADEKSIYERKTAKLKEKYDKDMASYRSKGKV 169
BLAST of High mobility group protein B1 vs. Ensembl Yeast
Match: NHP6A (High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to chromosomes; functionally redundant with Nhp6Bp; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6A has a paralog, NHP6B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000006256]) HSP 1 Score: 58.5362 bits (140), Expect = 1.713e-11 Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 3 Query: 300 PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDR--YEKMATLDKERYEKEMEQFRA 503 PKRA SA+ +F +E R VR E+PD +V ++LG W+A + ++ YE A DK+RYE E E + A Sbjct: 21 PKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNA 90
BLAST of High mobility group protein B1 vs. Ensembl Yeast
Match: NHP6B (High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6B has a paralog, NHP6A, that arose from the whole genome duplication [Source:SGD;Acc:S000002157]) HSP 1 Score: 57.3806 bits (137), Expect = 6.488e-11 Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 3 Query: 300 PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACS--DRDRYEKMATLDKERYEKEMEQFRA 503 PKR SA+ +F +E R VR E+PD +V R LG W+A + ++ YE A DK+RYE E E + A Sbjct: 27 PKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQPYESKAQADKKRYESEKELYNA 96
BLAST of High mobility group protein B1 vs. Ensembl Nematostella
Match: EDO36028 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJW6]) HSP 1 Score: 76.2554 bits (186), Expect = 2.736e-16 Identity = 51/170 (30.00%), Postives = 93/170 (54.71%), Query Frame = 3 Query: 60 KLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXX-----------GQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDR--YEKMATLDKERYEKEMEQFRAGNFVAGETK 530 K A +AY +F++ R++ +++ E +F +FS AEKWK+M EE++ F + A ++ ++ + T +++ +PKR SA+F+F + +R V+K++P+ +++ LG +W +D D+ Y+ MA DK RYE EM+ F+ G A + K Sbjct: 4 KGAKSAYNFFLQDQREKLQRE--EGKFSLADFSKVSAEKWKNMSEEEKETFVQKAGKDKERFKEEMQSYTPPPSEESGKKKRKKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTDDDKTQYQDMAKKDKVRYESEMKAFKDGKLPAKQNK 171
BLAST of High mobility group protein B1 vs. Ensembl Nematostella
Match: EDO39305 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAG5]) HSP 1 Score: 51.2174 bits (121), Expect = 1.148e-8 Identity = 19/66 (28.79%), Postives = 45/66 (68.18%), Query Frame = 3 Query: 300 PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQF 497 PKRA SA+ + ++ R +++ ++P V EV++ G +W+ +D+ ++E+ A ++K++Y + M+++ Sbjct: 1 PKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWEEKAAIEKQKYVQRMKEY 66
BLAST of High mobility group protein B1 vs. Ensembl Nematostella
Match: EDO47230 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RMY4]) HSP 1 Score: 50.8322 bits (120), Expect = 3.771e-7 Identity = 28/69 (40.58%), Postives = 38/69 (55.07%), Query Frame = 3 Query: 300 PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACS--DRDRYEKMATLDKERYEKEMEQFR 500 PK + + F +E+R KVR EHP+ EV + LG W S D+ RY A DKERY E+E ++ Sbjct: 21 PKAPLTGYVQFLNEQREKVRSEHPELPFPEVTKILGAEWSKMSQDDKQRYLDDAERDKERYIIELENYQ 89
BLAST of High mobility group protein B1 vs. Ensembl Nematostella
Match: EDO41032 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S5L8]) HSP 1 Score: 49.2914 bits (116), Expect = 1.329e-6 Identity = 26/69 (37.68%), Postives = 38/69 (55.07%), Query Frame = 3 Query: 300 PKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWE--ACSDRDRYEKMATLDKERYEKEMEQFR 500 PK + + F +E R KVR E+PD EV R LG +W + + + A DKERY KE+E+++ Sbjct: 15 PKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQLPTPQKQLFLEEAEKDKERYMKELEEYQ 83
BLAST of High mobility group protein B1 vs. Ensembl Medaka
Match: hmgb2a (high mobility group protein B2 [Source:NCBI gene;Acc:101157589]) HSP 1 Score: 110.923 bits (276), Expect = 1.002e-27 Identity = 66/168 (39.29%), Postives = 99/168 (58.93%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEND------XXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDR--YEKMATLDKERYEKEMEQFRA----GNFVAGETKRP 536 +AY YFV R+EH+KKHP +F EFS KC+E+WK+M +E+ +F+ELA + K K + ++KK P PKR SAFF FC + RPK+++++P + ++A++LG LW S +D+ YE A KE+YEK++ +RA G AG+ P Sbjct: 12 TSAYAYFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMSSKEKVKFDELAKTDKARYDREMKTYVPPKGAKKVKKKKDPNAPKRPPSAFFVFCSDHRPKIKEDNPGISIGDIAKKLGELWATQSAKDKAPYEAKAAKLKEKYEKDVAAYRAKGGSGKSDAGKKSGP 179
BLAST of High mobility group protein B1 vs. Ensembl Medaka
Match: hmgb1a (high mobility group-T protein [Source:NCBI gene;Acc:101165167]) HSP 1 Score: 108.612 bits (270), Expect = 4.764e-27 Identity = 63/158 (39.87%), Postives = 95/158 (60.13%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEN-----DXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACS--DRDRYEKMATLDKERYEKEMEQFRAGNFVAG 521 M++Y YFV+ R+EH+KKHP+ +F EFS KC+E+WK+M +E+ +FE++A ++ + K + ++ K P PKR SAFF FC E RPKV+ E P + +VA+ LG +W + S D+ YEK A KE+Y K++ +RA G Sbjct: 12 MSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKGKFEDMARQDKVRYDREMMSYVPAKGAKTKKFKDPNAPKRPPSAFFIFCSEFRPKVKGESPGLTIGDVAKRLGEMWNSTSAEDKQPYEKKAAKLKEKYGKDIAAYRAKGKTGG 169
BLAST of High mobility group protein B1 vs. Ensembl Medaka
Match: hmgb1b (high mobility group protein B1 [Source:NCBI gene;Acc:101156596]) HSP 1 Score: 105.531 bits (262), Expect = 5.630e-26 Identity = 62/156 (39.74%), Postives = 99/156 (63.46%), Query Frame = 3 Query: 69 MTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASE-----ENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACS--DRDRYEKMATLDKERYEKEMEQFRAGNFV 515 M++Y YFV+ R+EH+KKHP+ +F+EFS KC+E+WK+M P+E+ +FE++A + E + K K +K++ K P PKR SAFF FC + RPK++ E P + + A++LG +W + S ++ YEK A KE+Y+K++ +R V Sbjct: 12 MSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFEDMAKQDKVRYEREMKNYVPPKGQKKKRFKDPNAPKRPPSAFFLFCADFRPKIKSESPGLSIGDTAKKLGEMWNSSSAEEKQPYEKKAAKLKEKYDKDIVAYRTKGKV 167
BLAST of High mobility group protein B1 vs. Planmine SMEST
Match: SMESG000034017.1 (SMESG000034017.1) HSP 1 Score: 349.362 bits (895), Expect = 1.922e-119 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 3 Query: 33 MDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDNQDDSIHXXXXXXXXXXXXXXXXXITEKTGESSTVNANKSEHCVS 680 MDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDKKPPGRKKRTRKRQKKAPGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDNQDDSIHDDEDEEEEEVDNEVPNEITEKTGESSTVNANKSEHCVS Sbjct: 1 MDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDKKPPGRKKRTRKRQKKAPGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDNQDDSIHDDEDEEEEEVDNEVPNEITEKTGESSTVNANKSEHCVS 216
BLAST of High mobility group protein B1 vs. Planmine SMEST
Match: SMESG000052032.1 (SMESG000052032.1) HSP 1 Score: 196.438 bits (498), Expect = 7.464e-59 Identity = 98/178 (55.06%), Postives = 133/178 (74.72%), Query Frame = 3 Query: 60 KLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEEND----------XXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQFRAGNFVAGETKRPKLDNQDDSI 563 K AM+AY YFV++IR+EH++KHP EQ F+EFS KCAEKWK M P+E+KRFEE+A+ + D G ++R ++R+ K PGQPKRAWSAFF+FCDE RPKVR+ HPDWRV +A+ELGRLWE+C+D+++YEK + DK+RYE++M QFRAG +V KRP+ D+ ++ Sbjct: 12 KGAMSAYAYFVQVIREEHKRKHPGEQVVFSEFSKKCAEKWKLMTPKEKKRFEEMAASDKDRFNREMNNYQPTGEGGRRRRKRRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWESCTDKEKYEKKSEADKQRYEEQMSQFRAGQYVP-PVKRPRADSNGSAL 188
BLAST of High mobility group protein B1 vs. Planmine SMEST
Match: SMESG000068286.1 (SMESG000068286.1) HSP 1 Score: 148.673 bits (374), Expect = 5.136e-42 Identity = 74/166 (44.58%), Postives = 118/166 (71.08%), Query Frame = 3 Query: 51 KSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELASEENDX------XXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQFRAGNFVAGETK 530 K K A T Y FV+++R+EH+KKHP+EQ F+EFS +C+EKWK M P+E++RF ++A+++ ++ KR+ K P +PK AW+AFF+F DE R K+++E+P+++V +VA+ LG++WEAC D+ +YE+ A DKERY KE+E++++G V+ +TK Sbjct: 4 KKPKGAKTPYACFVQVVREEHKKKHPDEQIVFSEFSKRCSEKWKEMSPKEKQRFMDIAAKDKERYLKEMDNYQPPAGTKNKRKIKDPNKPKGAWTAFFFFSDEHRKKIKEENPEYKVGDVAKVLGKMWEACKDKSKYEEQAKRDKERYNKELEEYKSGTPVSKKTK 169
BLAST of High mobility group protein B1 vs. Planmine SMEST
Match: SMESG000023365.1 (SMESG000023365.1) HSP 1 Score: 134.42 bits (337), Expect = 9.134e-37 Identity = 74/160 (46.25%), Postives = 117/160 (73.12%), Query Frame = 3 Query: 60 KLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELAS--------EENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQFRAGNFV 515 K AM+AY FV++IR++++ KHP+E F+EFS KCAEKW+ + P+E+K+FE++A+ E N+ PPG K +++Q + P QPKR SAFF + E R +++ EHPDWRV ++A+ELG+ WE C+D+ +YE++A +KER+E+EM+++++G FV Sbjct: 11 KGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEYKSGTFV 170
BLAST of High mobility group protein B1 vs. Planmine SMEST
Match: SMESG000043905.1 (SMESG000043905.1) HSP 1 Score: 97.0561 bits (240), Expect = 4.048e-24 Identity = 49/107 (45.79%), Postives = 74/107 (69.16%), Query Frame = 3 Query: 186 MKPEERKRFEELA--------SEENDXXXXXXXXXXXXXXXXXXGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEK 482 M EE++RF+E+A E N+ K+ ++++ K P +PKRAWSAFF++C+E RP ++ HPDWR+ +VA+ELG+ WE C ++D+YEKM+ +DKERY K Sbjct: 1 MTLEEKRRFDEMAELDKSRHVKEINELLTVESNKKVKRKRIKNPNEPKRAWSAFFFYCNEFRPVIKDAHPDWRIGDVAKELGKRWEICLEKDKYEKMSKIDKERYVK 107 The following BLAST results are available for this feature:
BLAST of High mobility group protein B1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of High mobility group protein B1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of High mobility group protein B1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of High mobility group protein B1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of High mobility group protein B1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of High mobility group protein B1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of High mobility group protein B1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of High mobility group protein B1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of High mobility group protein B1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of High mobility group protein B1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of High mobility group protein B1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of High mobility group protein B1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 4
BLAST of High mobility group protein B1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 3
BLAST of High mobility group protein B1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30020070 ID=SMED30020070|Name=High mobility group protein B1|organism=Schmidtea mediterranea sexual|type=transcript|length=1454bpback to top protein sequence of SMED30020070-orf-1 >SMED30020070-orf-1 ID=SMED30020070-orf-1|Name=SMED30020070-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=222bp MKQSQMDSSTGKSNKLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|