BEN domain-containing protein

Overview
NameBEN domain-containing protein
Smed IDSMED30020002
Length (bp)2342
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of BEN domain-containing protein (SMED30020002) t-SNE clustered cells

Violin plots show distribution of expression levels for BEN domain-containing protein (SMED30020002) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of BEN domain-containing protein (SMED30020002) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for BEN domain-containing protein (SMED30020002) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30020002

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
headSMED30020002SMESG000080064.1 SmedASXL_016034SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
neuronSMED30020002SMESG000080064.1 dd_Smed_v4_7370_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
neuronSMED30020002SMESG000080064.1 dd_Smed_v4_7370_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
epidermal cellSMED30020002SMESG000080064.1 dd_Smed_v4_7370_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
headSMED30020002SMESG000080064.1 dd_Smed_v6_7370_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
epidermisSMED30020002SMESG000080064.1 dd_Smed_v4_7370_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of BEN domain-containing protein vs. TrEMBL
Match: A0A068WX88 (BEN domain OS=Echinococcus granulosus OX=6210 GN=EgrG_000333200 PE=4 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.050e-47
Identity = 91/134 (67.91%), Postives = 105/134 (78.36%), Query Frame = 1
Query: 1021 SKKSNFRGTSEAENEIDTAFIPREVNREIILCDEYSSVRLDKEVYNTLTSKAPRSATRLIRLLMKHFFSQDTLARSSLSGEGIYKDRLQPDVIEAIKLFIKRRHPKLKNGSINLCMTDVCVQARRVNKNQRTRL 1422
            SKK +FRGTSE ENE+   F P E N  IIL + + SV L KEVY +L  K+  SATRLIRLLMK FFSQ+ LA SSLSGEGIYK RLQP++ EAIK FI++RHP+LK GSINLCMTDVCVQARRV  NQR+R+
Sbjct:  217 SKKPSFRGTSEEENEVCPHFKPVEQNGHIILSELHPSVMLPKEVYQSLIIKSSGSATRLIRLLMKSFFSQEELAASSLSGEGIYKQRLQPEITEAIKAFIRKRHPQLKTGSINLCMTDVCVQARRVANNQRSRV 350          
BLAST of BEN domain-containing protein vs. TrEMBL
Match: A0A068XZR7 (BEN domain OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000333200 PE=4 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 4.622e-47
Identity = 91/134 (67.91%), Postives = 105/134 (78.36%), Query Frame = 1
Query: 1021 SKKSNFRGTSEAENEIDTAFIPREVNREIILCDEYSSVRLDKEVYNTLTSKAPRSATRLIRLLMKHFFSQDTLARSSLSGEGIYKDRLQPDVIEAIKLFIKRRHPKLKNGSINLCMTDVCVQARRVNKNQRTRL 1422
            SKK +FRGTSE ENE+   F P E N  IIL + + SV L KEVY +L  K+  SATRLIRLLMK FFSQ+ LA SSLSGEGIYK RLQP++ EAIK FI++RHP+LK GSINLCMTDVCVQARRV  NQR+R+
Sbjct:  217 SKKPSFRGTSEEENEVCPHFKPVEQNGHIILSELHPSVMLPKEVYQSLIIKSSGSATRLIRLLMKSFFSQEELAASSLSGEGIYKQRLQPEITEAIKAFIRKRHPQLKTGSINLCMTDVCVQARRVANNQRSRV 350          
BLAST of BEN domain-containing protein vs. TrEMBL
Match: A0A4S2LI88 (BEN domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007401 PE=4 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.247e-46
Identity = 88/132 (66.67%), Postives = 106/132 (80.30%), Query Frame = 1
Query: 1024 KKSNFRGTSEAENEIDTAFIPREVNREIILCDEYSSVRLDKEVYNTLTSKAPRSATRLIRLLMKHFFSQDTLARSSLSGEGIYKDRLQPDVIEAIKLFIKRRHPKLKNGSINLCMTDVCVQARRVNKNQRTR 1419
            KKSNFRGTSE ENE+   F P E N +IIL D + +V+L K+++ +L  K+  SATRLIRLLMK FF+QD LA SSLSGEGIYK RL+P + EAIK+FI++RHP+LK GSINLCMTDVCVQARRV  NQR+R
Sbjct:  507 KKSNFRGTSEEENEVSPDFKPTEFNGQIILSDAHPNVKLSKDIFYSLIVKSSGSATRLIRLLMKSFFTQDELAASSLSGEGIYKQRLEPSITEAIKIFIRKRHPQLKTGSINLCMTDVCVQARRVANNQRSR 638          
BLAST of BEN domain-containing protein vs. TrEMBL
Match: H2KTU2 (BEN domain-containing protein OS=Clonorchis sinensis OX=79923 GN=CLF_106180 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.118e-45
Identity = 88/132 (66.67%), Postives = 106/132 (80.30%), Query Frame = 1
Query: 1024 KKSNFRGTSEAENEIDTAFIPREVNREIILCDEYSSVRLDKEVYNTLTSKAPRSATRLIRLLMKHFFSQDTLARSSLSGEGIYKDRLQPDVIEAIKLFIKRRHPKLKNGSINLCMTDVCVQARRVNKNQRTR 1419
            KKSNFRGTSE ENE+   F P E N +IIL D + +V+L K+++ +L  K+  SATRLIRLLMK FF+QD LA SSLSGEGIYK RL+P + EAIK+FI++RHP+LK GSINLCMTDVCVQARRV  NQR+R
Sbjct:  505 KKSNFRGTSEEENEVSPDFKPTESNGQIILSDAHPNVKLSKDIFYSLIVKSSGSATRLIRLLMKSFFTQDELAASSLSGEGIYKQRLEPSITEAIKIFIRKRHPQLKTGSINLCMTDVCVQARRVANNQRSR 636          
BLAST of BEN domain-containing protein vs. TrEMBL
Match: A0A4Z2CZR1 (BEN domain isoform 2 OS=Schistosoma japonicum OX=6182 GN=EWB00_006211 PE=4 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.142e-45
Identity = 87/132 (65.91%), Postives = 107/132 (81.06%), Query Frame = 1
Query: 1024 KKSNFRGTSEAENEIDTAFIPREVNREIILCDEYSSVRLDKEVYNTLTSKAPRSATRLIRLLMKHFFSQDTLARSSLSGEGIYKDRLQPDVIEAIKLFIKRRHPKLKNGSINLCMTDVCVQARRVNKNQRTR 1419
            KKSNFRGTSE EN++   F P EVN +I+L + + +V+L K+++ +L  K+  SATRLIRLLMK FF+QD LA SSLSGEGIYK RL+P V EAIK+FI++RHP+LK GSINLCMTDVCVQARRV  NQR+R
Sbjct:  531 KKSNFRGTSEEENKVAPNFKPVEVNNQILLSEAHPNVKLSKDIFYSLIVKSSGSATRLIRLLMKSFFTQDELAASSLSGEGIYKQRLEPSVTEAIKIFIRQRHPQLKTGSINLCMTDVCVQARRVANNQRSR 662          
BLAST of BEN domain-containing protein vs. Planmine SMEST
Match: SMESG000080064.1 (SMESG000080064.1)

HSP 1 Score: 987.638 bits (2552), Expect = 0.000e+0
Identity = 558/560 (99.64%), Postives = 559/560 (99.82%), Query Frame = 1
Query:   28 MSLISEEAXXXXXXXXXXXXXXPKHANSISDRSNMKLTIKTDSRLNESPFSMKNEQLVGPNEIINQFSMPQTEQNLAFPVNCLDTSRILNMVNDGDNDLSRLVNQSGLRSNEKLTXXXXXXXXXXXXXXXISHLQSILAAILTSSPNNVMAPWLSTKTALTSILQQLPAPTTSLVSFSSLHSLYANIQNTCVSLDKLLEQYFILFISAFLKTQEKSLLNPLLHSNIQQTQDENTVPKTAXXXXXXXXXXXXXXXXXXXLKRKSASPQRSKSQKSPNSIDYQSTYSTVNLPSDENSNLYNSMNSDPNDSNLSAYIHNSGSRLFKRKKIIQNGSKKSNFRGTSEAENEIDTAFIPREVNREIILCDEYSSVRLDKEVYNTLTSKAPRSATRLIRLLMKHFFSQDTLARSSLSGEGIYKDRLQPDVIEAIKLFIKRRHPKLKNGSINLCMTDVCVQARRVNKNQRTRLPSSAEVNSKAADSANSDGYSPTIFSGISNTNGGLGSNFNLLTSGSVHELGMKXXXXXXXXXXXXXRGQNNTGSPSPFMMTSTTNHHSSPDTFSIE 1707
            MSLISEEALDLSNDIINNNLILPKHANSISDRSNMKLTIKTDSRLNES FSMKNEQLVGPNEIINQFSMPQTEQNLAFPVNCLDTSRILNMVN+GDNDLSRLVNQSGLRSNEKLTEYFAQAYQEQQQQQQISHLQSILAAILTSSPNNVMAPWLSTKTALTSILQQLPAPTTSLVSFSSLHSLYANIQNTCVSLDKLLEQYFILFISAFLKTQEKSLLNPLLHSNIQQTQDENTVPKTANNNNTNNAISNNNNNNNVNLKRKSASPQRSKSQKSPNSIDYQSTYSTVNLPSDENSNLYNSMNSDPNDSNLSAYIHNSGSRLFKRKKIIQNGSKKSNFRGTSEAENEIDTAFIPREVNREIILCDEYSSVRLDKEVYNTLTSKAPRSATRLIRLLMKHFFSQDTLARSSLSGEGIYKDRLQPDVIEAIKLFIKRRHPKLKNGSINLCMTDVCVQARRVNKNQRTRLPSSAEVNSKAADSANSDGYSPTIFSGISNTNGGLGSNFNLLTSGSVHELGMKPSSPESGNNSLSSRGQNNTGSPSPFMMTSTTNHHSSPDTFSIE
Sbjct:    1 MSLISEEALDLSNDIINNNLILPKHANSISDRSNMKLTIKTDSRLNESTFSMKNEQLVGPNEIINQFSMPQTEQNLAFPVNCLDTSRILNMVNEGDNDLSRLVNQSGLRSNEKLTEYFAQAYQEQQQQQQISHLQSILAAILTSSPNNVMAPWLSTKTALTSILQQLPAPTTSLVSFSSLHSLYANIQNTCVSLDKLLEQYFILFISAFLKTQEKSLLNPLLHSNIQQTQDENTVPKTANNNNTNNAISNNNNNNNVNLKRKSASPQRSKSQKSPNSIDYQSTYSTVNLPSDENSNLYNSMNSDPNDSNLSAYIHNSGSRLFKRKKIIQNGSKKSNFRGTSEAENEIDTAFIPREVNREIILCDEYSSVRLDKEVYNTLTSKAPRSATRLIRLLMKHFFSQDTLARSSLSGEGIYKDRLQPDVIEAIKLFIKRRHPKLKNGSINLCMTDVCVQARRVNKNQRTRLPSSAEVNSKAADSANSDGYSPTIFSGISNTNGGLGSNFNLLTSGSVHELGMKPSSPESGNNSLSSRGQNNTGSPSPFMMTSTTNHHSSPDTFSIE 560          
BLAST of BEN domain-containing protein vs. Planmine SMEST
Match: SMESG000000832.1 (SMESG000000832.1)

HSP 1 Score: 173.326 bits (438), Expect = 2.262e-48
Identity = 85/135 (62.96%), Postives = 101/135 (74.81%), Query Frame = 1
Query: 1024 KKSNFRGTSEAENEIDTAFIPREVNREIILCDEYSSVRLDKEVYNTLTSKAPRSATRLIRLLMKHFFSQDTLARSSLSGEGIYKDRLQPDVIEAIKLFIKRRHPKLKNGSINLCMTDVCVQARRV--NKNQRTRL 1422
            K+  FRGTS+ ENEIDT F P E+N E+IL   YS +R+ K+++  +  KA  SATRLIRLLMK+FF Q  L  SSLSGEG YK +L P +I AIK FIK RHPKLKNGSINLCMTDVCVQARRV   K+ +T+L
Sbjct:  160 KRKTFRGTSDEENEIDTTFKPIEINNEVILSKNYSDIRVGKDLFYMMLLKASNSATRLIRLLMKNFFCQKELEVSSLSGEGYYKQKLNPQIITAIKEFIKTRHPKLKNGSINLCMTDVCVQARRVYRTKDPKTKL 294          
The following BLAST results are available for this feature:
BLAST of BEN domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BEN domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BEN domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BEN domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BEN domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BEN domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BEN domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BEN domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A068WX883.050e-4767.91BEN domain OS=Echinococcus granulosus OX=6210 GN=E... [more]
A0A068XZR74.622e-4767.91BEN domain OS=Echinococcus multilocularis OX=6211 ... [more]
A0A4S2LI884.247e-4666.67BEN domain-containing protein OS=Opisthorchis feli... [more]
H2KTU21.118e-4566.67BEN domain-containing protein OS=Clonorchis sinens... [more]
A0A4Z2CZR14.142e-4565.91BEN domain isoform 2 OS=Schistosoma japonicum OX=6... [more]
back to top
BLAST of BEN domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BEN domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BEN domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BEN domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BEN domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BEN domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000080064.10.000e+099.64SMESG000080064.1[more]
SMESG000000832.12.262e-4862.96SMESG000000832.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30020002 ID=SMED30020002|Name=BEN domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2342bp
TCTATATAAATCTTATATGACTCAGCCATGTCATTAATCAGTGAAGAAGC
CCTCGACCTTTCTAATGACATAATTAACAACAACCTCATTCTGCCAAAAC
ACGCAAATTCCATCAGCGACAGGTCAAATATGAAATTAACAATCAAAACT
GATTCAAGATTGAATGAAAGTCCATTTTCAATGAAAAATGAGCAACTTGT
AGGACCAAACGAAATAATAAACCAGTTTTCCATGCCTCAAACAGAACAAA
ATCTTGCGTTTCCGGTTAATTGTCTAGATACGTCAAGAATACTCAACATG
GTAAATGACGGAGATAATGATCTGTCGAGGTTAGTTAATCAAAGTGGATT
GAGATCGAATGAAAAACTCACTGAATATTTTGCGCAAGCTTATCAAGAGC
AGCAACAACAACAACAGATCTCTCATCTCCAATCAATTTTAGCTGCTATT
CTCACTTCATCACCGAATAACGTTATGGCTCCATGGCTTTCAACAAAAAC
GGCTCTGACATCCATTTTACAGCAATTACCGGCACCAACTACTTCACTCG
TTAGTTTCTCATCTCTCCATAGTCTCTACGCCAATATTCAGAATACTTGT
GTTTCACTCGACAAATTACTCGAACAGTATTTTATACTTTTTATTTCTGC
TTTCTTGAAAACCCAAGAAAAATCTCTCTTGAATCCGCTTTTACACTCGA
ATATCCAACAAACACAAGATGAAAATACTGTTCCAAAAACCGCGAACAAC
AACAATACCAACAATGCAATCAGCAATAACAATAACAACAATAATGTCAA
TCTCAAACGAAAGTCAGCGTCTCCCCAACGAAGTAAATCTCAAAAATCAC
CGAACTCAATAGATTATCAATCGACATATTCCACAGTAAACTTGCCATCA
GACGAAAACTCGAATCTCTACAACTCAATGAACTCGGATCCGAACGACAG
CAATCTATCAGCTTACATTCACAATTCCGGCTCGAGACTTTTCAAGCGCA
AGAAAATCATTCAAAACGGCAGTAAAAAGTCGAATTTTCGCGGTACGAGT
GAAGCAGAAAATGAAATCGACACAGCATTCATACCTCGAGAAGTCAATAG
AGAAATAATTCTTTGCGATGAATACTCCAGTGTTCGTCTTGATAAAGAAG
TTTACAATACACTTACTTCAAAAGCTCCTCGAAGCGCTACAAGACTAATT
CGATTATTAATGAAACATTTCTTCTCTCAAGATACTCTCGCTAGAAGCTC
TTTAAGTGGAGAAGGAATCTACAAAGACCGTTTACAGCCAGACGTCATCG
AAGCTATTAAACTATTTATCAAACGACGCCATCCAAAATTGAAAAACGGT
TCCATTAACCTCTGCATGACTGACGTTTGTGTACAGGCGAGAAGAGTGAA
CAAGAATCAACGGACCCGTTTGCCATCATCGGCTGAAGTGAATTCAAAAG
CCGCAGATAGTGCTAACTCAGATGGATATTCTCCTACAATTTTTTCGGGA
ATCTCCAATACGAATGGAGGACTGGGAAGTAATTTCAATTTGCTAACATC
TGGATCCGTTCATGAGTTGGGAATGAAACCCAGTTCTCCGGAAAGCGGTA
ACAATTCGTTATCGAGTCGCGGACAGAATAATACTGGTTCTCCGTCTCCG
TTCATGATGACATCGACAACCAATCATCACAGTTCACCAGACACATTTTC
TATAGAATAGAAGAGAACTTACGCAAAAAAAAACGTTTCGAATTTTTAAA
AAAGAGCTCCCTGTGATAAATTTCCGAACCGAAAGAATACCAAACCAAAT
TTGCATTGAGAGTTGAAGCAAGTTCGTTAGAAACAAAAAAATAGCATCTT
ATAGATTATTTTCTAGTTCATTTTACTAGGCGATCCCAAGCCTATTTTTT
AGATGATTTGTTTTTTTTTATTTCCAGCTTTTAGCAAAAGTAGTATGAAA
GTAGTAGTAAAGTAGTAGTTGATATGAATATTTATACATACAAAAGTAGC
TTTCATCGACCGTCCTTTCCTTCGATGGAAGGACGGTTTTTTCCATATTA
TGCCTTAGATAAGTTTTTAGAAGCTGTAGTCCTTATCATATTATTTTTTG
TCTACTGTAAATAAATCAAAATTCTTTTCTTAGTAAATTTTGATTTTAAC
AGCGAGATAATCGAGGGTCAATGGCAAATTAAAACAGAAAAAAAGAGACA
TTTACAAAAAAAAATCAACTCGCTATTGATGAAAATTAAATTTTTATTTT
TACTTCAGCCTCGAAACAAGAAGACCTCGCTCAATTTTTTTTGTTATTTC
ATTCTTATTATTATCAGGATTATTTATTATTATTATTATTAT
back to top

protein sequence of SMED30020002-orf-1

>SMED30020002-orf-1 ID=SMED30020002-orf-1|Name=SMED30020002-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=561bp
MSLISEEALDLSNDIINNNLILPKHANSISDRSNMKLTIKTDSRLNESPF
SMKNEQLVGPNEIINQFSMPQTEQNLAFPVNCLDTSRILNMVNDGDNDLS
RLVNQSGLRSNEKLTEYFAQAYQEQQQQQQISHLQSILAAILTSSPNNVM
APWLSTKTALTSILQQLPAPTTSLVSFSSLHSLYANIQNTCVSLDKLLEQ
YFILFISAFLKTQEKSLLNPLLHSNIQQTQDENTVPKTANNNNTNNAISN
NNNNNNVNLKRKSASPQRSKSQKSPNSIDYQSTYSTVNLPSDENSNLYNS
MNSDPNDSNLSAYIHNSGSRLFKRKKIIQNGSKKSNFRGTSEAENEIDTA
FIPREVNREIILCDEYSSVRLDKEVYNTLTSKAPRSATRLIRLLMKHFFS
QDTLARSSLSGEGIYKDRLQPDVIEAIKLFIKRRHPKLKNGSINLCMTDV
CVQARRVNKNQRTRLPSSAEVNSKAADSANSDGYSPTIFSGISNTNGGLG
SNFNLLTSGSVHELGMKPSSPESGNNSLSSRGQNNTGSPSPFMMTSTTNH
HSSPDTFSIE*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR018379BEN_domain
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 522..563
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 464..483
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 519..563
IPR018379BEN domainPROSITEPS51457BENcoord: 369..461
score: 11.884