RNA binding motif single stranded interacting

Overview


Name	RNA binding motif single stranded interacting
Smed ID	SMED30020000
Length (bp)	1039

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of RNA binding motif single stranded interacting (SMED30020000) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA binding motif single stranded interacting (SMED30020000) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA binding motif single stranded interacting (SMED30020000) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30020000

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
intestinal phagocyte	SMED30020000	SMESG000042048.1	Contig4307	GPL15192	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30020000	SMESG000010632.1	Contig4307	GPL15192	PMID:23079596 Forsthoefel et al., 2012
pharynx	SMED30020000	SMESG000010632.1	dd_Smed_v4_3575_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30020000	SMESG000010632.1	dd_Smed_v4_3575_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30020000	SMESG000010632.1	dd_Smed_v4_3575_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30020000	SMESG000010632.1	dd_Smed_v4_3575_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30020000	SMESG000010632.1	dd_Smed_v4_3575_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
anterior side	SMED30020000	SMESG000010632.1	dd_Smed_v4_3575_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30020000	SMESG000010632.1	dd_Smed_v4_3575_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907])

HSP 1 Score: 55.0694 bits (131), Expect = 8.425e-8
Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN-SIGFVRYTSKEEAERAINEINKK 603
            +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ S+  +  +GF R  S E+ E  I   N K
Sbjct:  105 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 171

HSP 2 Score: 50.0618 bits (118), Expect = 2.831e-6
Identity = 23/73 (31.51%), Postives = 40/73 (54.79%), Query Frame = 1

Query:  397 YEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNN--NSIGFVRYTSKEEAERAINEINKKNL 609
            ++   + N+Y++ LP H  + +L +L QPYG I+S K I   T N     GFV + S   A++A++ +    +
Sbjct:   23 WDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGV 95

[Close]

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN-SIGFVRYTSKEEAERAINEINKK 603
            +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ S+  +  +GF R  S E+ E  I   N K
Sbjct:  105 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 171

HSP 2 Score: 50.0618 bits (118), Expect = 2.831e-6
Identity = 23/73 (31.51%), Postives = 40/73 (54.79%), Query Frame = 1

Query:  397 YEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNN--NSIGFVRYTSKEEAERAINEINKKNL 609
            ++   + N+Y++ LP H  + +L +L QPYG I+S K I   T N     GFV + S   A++A++ +    +
Sbjct:   23 WDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGV 95

[Close]

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN-SIGFVRYTSKEEAERAINEINKK 603
            +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ S+  +  +GF R  S E+ E  I   N K
Sbjct:  105 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 171

HSP 2 Score: 50.0618 bits (118), Expect = 2.831e-6
Identity = 23/73 (31.51%), Postives = 40/73 (54.79%), Query Frame = 1

Query:  397 YEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNN--NSIGFVRYTSKEEAERAINEINKKNL 609
            ++   + N+Y++ LP H  + +L +L QPYG I+S K I   T N     GFV + S   A++A++ +    +
Sbjct:   23 WDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGV 95

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907])

HSP 1 Score: 55.0694 bits (131), Expect = 8.937e-8
Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN-SIGFVRYTSKEEAERAINEINKK 603
            +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ S+  +  +GF R  S E+ E  I   N K
Sbjct:  118 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 184

HSP 2 Score: 50.447 bits (119), Expect = 2.879e-6
Identity = 23/73 (31.51%), Postives = 40/73 (54.79%), Query Frame = 1

Query:  397 YEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNN--NSIGFVRYTSKEEAERAINEINKKNL 609
            ++   + N+Y++ LP H  + +L +L QPYG I+S K I   T N     GFV + S   A++A++ +    +
Sbjct:   36 WDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGV 108

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909])

HSP 1 Score: 54.299 bits (129), Expect = 9.621e-8
Identity = 23/69 (33.33%), Postives = 40/69 (57.97%), Query Frame = 1

Query:  400 EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN-SIGFVRYTSKEEAERAINEINKK 603
            + +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ ++  +  +GF R  S E+ E  I   N K
Sbjct:    5 QEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGK 73

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: tiar-1 (TIA-1/TIAL RNA binding protein homolog [Source:UniProtKB/TrEMBL;Acc:Q95QV8])

HSP 1 Score: 53.1434 bits (126), Expect = 1.047e-7
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 1

Query:  418 NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKS--TNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFS 651
            +V+V +L       +L E FQP+G +   K+I+ +  T +   GFV Y  +EEAERAI ++N + L      RT+R  ++
Sbjct:   23 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWL----GRRTIRTNWA 98

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: tiar-1 (TIA-1/TIAL RNA binding protein homolog [Source:UniProtKB/TrEMBL;Acc:Q95QV8])

HSP 1 Score: 53.1434 bits (126), Expect = 1.089e-7
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 1

Query:  418 NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKS--TNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFS 651
            +V+V +L       +L E FQP+G +   K+I+ +  T +   GFV Y  +EEAERAI ++N + L      RT+R  ++
Sbjct:   33 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWL----GRRTIRTNWA 108

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: tiar-1 (TIA-1/TIAL RNA binding protein homolog [Source:UniProtKB/TrEMBL;Acc:Q95QV8])

HSP 1 Score: 53.1434 bits (126), Expect = 1.164e-7
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 1

Query:  418 NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKS--TNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFS 651
            +V+V +L       +L E FQP+G +   K+I+ +  T +   GFV Y  +EEAERAI ++N + L      RT+R  ++
Sbjct:  136 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWL----GRRTIRTNWA 211

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: tiar-1 (TIA-1/TIAL RNA binding protein homolog [Source:UniProtKB/TrEMBL;Acc:Q95QV8])

HSP 1 Score: 53.1434 bits (126), Expect = 1.311e-7
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 1

Query:  418 NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKS--TNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFS 651
            +V+V +L       +L E FQP+G +   K+I+ +  T +   GFV Y  +EEAERAI ++N + L      RT+R  ++
Sbjct:  104 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWL----GRRTIRTNWA 179

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Match: exc-7 (pep chromosome:WBcel235:II:9575971:9581490:1 gene:WBGene00001368.1 transcript:F35H8.5.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:exc-7)

HSP 1 Score: 51.2174 bits (121), Expect = 5.881e-7
Identity = 35/126 (27.78%), Postives = 68/126 (53.97%), Query Frame = 1

Query:  328 KEHLKIISNY----LQNNNLDSIKIQFYEAKDER----NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNS--IGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSNPAAN 675
            ++ L+ +S++    LQN    +IK+ +    +++    N+YV  +P      EL  +F+P+G II+ +++  +    S  +GFVR+  K+EA+ AI  +N       + + TV+     ++NPA+N
Sbjct:   94 EDALRAVSSFNGLRLQNK---TIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKF----ANNPASN 212

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BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: elav (gene:FBgn0260400 transcript:FBtr0100254)

HSP 1 Score: 58.9214 bits (141), Expect = 2.396e-9
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1

Query:  379 SIKIQFY----EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN---SIGFVRYTSKEEAERAINEIN 597
            +IK+ F     +A    N+YV  LP    + EL  +F P+G II+ +++Q + N+     +GF+R+  +EEA RAI  +N
Sbjct:  228 TIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALN 307

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: elav (gene:FBgn0260400 transcript:FBtr0114366)

HSP 1 Score: 58.9214 bits (141), Expect = 2.396e-9
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1

Query:  379 SIKIQFY----EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN---SIGFVRYTSKEEAERAINEIN 597
            +IK+ F     +A    N+YV  LP    + EL  +F P+G II+ +++Q + N+     +GF+R+  +EEA RAI  +N
Sbjct:  228 TIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALN 307

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: elav (gene:FBgn0260400 transcript:FBtr0307173)

HSP 1 Score: 58.9214 bits (141), Expect = 2.431e-9
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1

Query:  379 SIKIQFY----EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN---SIGFVRYTSKEEAERAINEIN 597
            +IK+ F     +A    N+YV  LP    + EL  +F P+G II+ +++Q + N+     +GF+R+  +EEA RAI  +N
Sbjct:  232 TIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALN 311

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: elav (gene:FBgn0260400 transcript:FBtr0070091)

HSP 1 Score: 58.9214 bits (141), Expect = 2.431e-9
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1

Query:  379 SIKIQFY----EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN---SIGFVRYTSKEEAERAINEIN 597
            +IK+ F     +A    N+YV  LP    + EL  +F P+G II+ +++Q + N+     +GF+R+  +EEA RAI  +N
Sbjct:  232 TIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALN 311

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0333288)

HSP 1 Score: 56.225 bits (134), Expect = 1.491e-8
Identity = 24/65 (36.92%), Postives = 41/65 (63.08%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQ-KSTNNNSIGFVRYTSKEEAERAINEIN 597
            +D  N+Y+ NLP HFKET+L  +   YG ++S ++++ +  N+  +GF R  S+E+ E+ I   N
Sbjct:  106 QDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFN 170

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: rbms1b (RNA binding motif, single stranded interacting protein 1b [Source:ZFIN;Acc:ZDB-GENE-100812-3])

HSP 1 Score: 53.5286 bits (127), Expect = 6.241e-8
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNS--IGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEF 648
            +D  N+Y+ NLPL   E EL  + +P+G ++S +++ + TN  S  +GF R  S E+ E  I+  N K   FL     V  +F
Sbjct:  133 QDPTNLYISNLPLTMDEQELEAMLKPFGQVVSTRIL-RDTNGASRGVGFARMESTEKCEAVISHFNGK---FLKTPAGVMGKF 211

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: pabpc1l (poly(A) binding protein, cytoplasmic 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-5836])

HSP 1 Score: 54.6842 bits (130), Expect = 9.189e-8
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1

Query:  382 IKIQFYEAKDER-------NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            +K +F + K ER       N+YVKNL     + +L + F PYG I S K++    ++   GFV ++S EEA +A+ E+N +
Sbjct:  276 LKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGR 356

[Close]

Query:  382 IKIQFYEAKDER-------NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            +K +F + K ER       N+YVKNL     + +L + F PYG I S K++    ++   GFV ++S EEA +A+ E+N +
Sbjct:  276 LKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGR 356

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: CU655816.1 (pep chromosome:GRCz11:CHR_ALT_CTG8_1_26:45331152:45338052:1 gene:ENSDARG00000114417.1 transcript:ENSDART00000191037.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CU655816.1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.036e-7
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1

Query:  382 IKIQFYEAKDER-------NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            +K +F + K ER       N+YVKNL     + +L + F PYG I S K++    ++   GFV ++S EEA +A+ E+N +
Sbjct:  119 LKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGR 199

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Match: pabpc1l (poly(A) binding protein, cytoplasmic 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-5836])

HSP 1 Score: 54.299 bits (129), Expect = 1.083e-7
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1

Query:  382 IKIQFYEAKDER-------NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            +K +F + K ER       N+YVKNL     + +L + F PYG I S K++    ++   GFV ++S EEA +A+ E+N +
Sbjct:  276 LKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGR 356

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:NCBI gene;Acc:100036596])

HSP 1 Score: 55.8398 bits (133), Expect = 3.832e-8
Identity = 24/69 (34.78%), Postives = 41/69 (59.42%), Query Frame = 1

Query:  400 EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN-SIGFVRYTSKEEAERAINEINKK 603
            + +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ S+  +  +GF R  S E+ E  I+  N K
Sbjct:  104 QEQDPTNLYISNLPLSMDEQELESMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVISHFNGK 172

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:NCBI gene;Acc:100036596])

HSP 1 Score: 55.4546 bits (132), Expect = 4.855e-8
Identity = 24/67 (35.82%), Postives = 40/67 (59.70%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN-SIGFVRYTSKEEAERAINEINKK 603
            +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ S+  +  +GF R  S E+ E  I+  N K
Sbjct:  106 QDPTNLYISNLPLSMDEQELESMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVISHFNGK 172

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:NCBI gene;Acc:100036596])

HSP 1 Score: 55.4546 bits (132), Expect = 4.950e-8
Identity = 24/69 (34.78%), Postives = 41/69 (59.42%), Query Frame = 1

Query:  400 EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN-SIGFVRYTSKEEAERAINEINKK 603
            + +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ S+  +  +GF R  S E+ E  I+  N K
Sbjct:  129 QEQDPTNLYISNLPLSMDEQELESMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVISHFNGK 197

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:NCBI gene;Acc:100036596])

HSP 1 Score: 55.4546 bits (132), Expect = 5.360e-8
Identity = 24/67 (35.82%), Postives = 40/67 (59.70%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN-SIGFVRYTSKEEAERAINEINKK 603
            +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ S+  +  +GF R  S E+ E  I+  N K
Sbjct:  142 QDPTNLYISNLPLSMDEQELESMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVISHFNGK 208

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Match: rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:NCBI gene;Acc:100036596])

HSP 1 Score: 55.4546 bits (132), Expect = 5.389e-8
Identity = 24/67 (35.82%), Postives = 40/67 (59.70%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN-SIGFVRYTSKEEAERAINEINKK 603
            +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ S+  +  +GF R  S E+ E  I+  N K
Sbjct:  136 QDPTNLYISNLPLSMDEQELESMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVISHFNGK 202

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Pabpc1l (poly(A) binding protein, cytoplasmic 1-like [Source:MGI Symbol;Acc:MGI:1922908])

HSP 1 Score: 57.3806 bits (137), Expect = 1.408e-8
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 1

Query:  382 IKIQFYEAKDER-------NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            +K +F + K ER       N+YVKNL     +  L E+F  YG I S K++ +S+++   GFV ++S EEA +A+ E+N +
Sbjct:  276 LKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGR 356

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774])

HSP 1 Score: 54.6842 bits (130), Expect = 8.491e-8
Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTN-NNSIGFVRYTSKEEAERAINEINKK 603
            +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ S+  +  +GF R  S E+ E  I   N K
Sbjct:  138 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGK 204

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774])

HSP 1 Score: 54.299 bits (129), Expect = 9.463e-8
Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTN-NNSIGFVRYTSKEEAERAINEINKK 603
            +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ S+  +  +GF R  S E+ E  I   N K
Sbjct:  136 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGK 202

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774])

HSP 1 Score: 54.299 bits (129), Expect = 9.609e-8
Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTN-NNSIGFVRYTSKEEAERAINEINKK 603
            +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ S+  +  +GF R  S E+ E  I   N K
Sbjct:  105 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGK 171

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Match: Pabpc4l (poly(A) binding protein, cytoplasmic 4-like [Source:MGI Symbol;Acc:MGI:3643087])

HSP 1 Score: 51.6026 bits (122), Expect = 1.558e-7
Identity = 25/64 (39.06%), Postives = 35/64 (54.69%), Query Frame = 1

Query:  418 NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNL 609
            NV++KNL        L E F P+G I+S K++     +   GFV Y  +  A+RAI E+N K L
Sbjct:   99 NVFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTDGEGSKGYGFVHYQDRRAADRAIEEMNGKLL 162

[Close]

BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|P16914|ELAV_DROME (Protein elav OS=Drosophila melanogaster OX=7227 GN=elav PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.437e-8
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1

Query:  379 SIKIQFY----EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN---SIGFVRYTSKEEAERAINEIN 597
            +IK+ F     +A    N+YV  LP    + EL  +F P+G II+ +++Q + N+     +GF+R+  +EEA RAI  +N
Sbjct:  232 TIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALN 311

[Close]

BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|P23241|ELAV_DROVI (Protein elav OS=Drosophila virilis OX=7244 GN=elav PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.622e-8
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1

Query:  379 SIKIQFY----EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN---SIGFVRYTSKEEAERAINEIN 597
            +IK+ F     +A    N+YV  LP    + EL  +F P+G II+ +++Q + N+     +GF+R+  +EEA RAI  +N
Sbjct:  268 TIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALN 347

[Close]

BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|B4LFQ9|SHEP_DROVI (Protein alan shepard OS=Drosophila virilis OX=7244 GN=shep PE=3 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 1.369e-7
Identity = 25/79 (31.65%), Postives = 45/79 (56.96%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQ-KSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVR 639
            +D  N+Y+ NLP HFKET+L  +   YG ++S ++++ +  N+  +GF R  S+E+ E+ I   N   +    +   V+
Sbjct:  319 QDPTNLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVK 397

[Close]

BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|B4IX08|SHEP_DROGR (Protein alan shepard OS=Drosophila grimshawi OX=7222 GN=shep PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.409e-7
Identity = 25/79 (31.65%), Postives = 45/79 (56.96%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQ-KSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVR 639
            +D  N+Y+ NLP HFKET+L  +   YG ++S ++++ +  N+  +GF R  S+E+ E+ I   N   +    +   V+
Sbjct:  333 QDPTNLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVK 411

[Close]

BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Match: sp|B4HUE4|SHEP_DROSE (Protein alan shepard OS=Drosophila sechellia OX=7238 GN=shep PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.615e-7
Identity = 24/65 (36.92%), Postives = 41/65 (63.08%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQ-KSTNNNSIGFVRYTSKEEAERAINEIN 597
            +D  N+Y+ NLP HFKET+L  +   YG ++S ++++ +  N+  +GF R  S+E+ E+ I   N
Sbjct:  307 QDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFN 371

[Close]

BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A2H1CWG4 (RNA binding motif single stranded interacting OS=Fasciola hepatica OX=6192 GN=D915_000288 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.397e-15
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1

Query:  379 SIKIQFYEAKDERNVYVKNLPLHFKETE-LSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSN 663
            S+K  F   KD+ NV+V++LP     TE L ELF+PYG I S KL+        IGFVR++S  EAE+AI  +NKKNLC   N + V C+ +  ++
Sbjct:   16 SVKFAFENEKDKLNVFVQHLPRSDYTTEDLMELFKPYGVITSAKLLDSMKGPTGIGFVRFSSPTEAEKAIKMMNKKNLCLGENTKAVTCKLADKAD 111

[Close]

BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A504YD29 (RNA binding motif single stranded interacting OS=Fasciola gigantica OX=46835 GN=FGIG_10768 PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.204e-15
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1

Query:  379 SIKIQFYEAKDERNVYVKNLPLHFKETE-LSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSN 663
            S+K  F   KD+ NV+V++LP     TE L ELF+PYG I S KL+        IGFVR++S  EAE+AI  +NKKNLC   N + V C+ +  ++
Sbjct:   16 SVKFAFENEKDKLNVFVQHLPRSDYTTEDLMELFKPYGVITSAKLLDSMKGPTGIGFVRFSSPTEAEKAIKMMNKKNLCLGENTKAVTCKLADKAD 111

[Close]

BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A3P8HPU7 (RRM domain-containing protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS9698 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.332e-14
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1

Query:  379 SIKIQFYEAKDERNVYVKNLPL-HFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSN 663
            S+K  F   KD+ NV+V++LP   +   +L ELF+P+G I S KL+        IGFVR++S  EAE+AI  +NKKNLC   N + V C+ +  ++
Sbjct:   16 SVKFAFENEKDKLNVFVQHLPRSDYTTDDLMELFKPFGVITSAKLLDSMKGPTGIGFVRFSSPTEAEKAIKMMNKKNLCLGENTKAVTCKLADKAD 111

[Close]

BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: A0A183ARW3 (RRM domain-containing protein OS=Echinostoma caproni OX=27848 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.464e-14
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1

Query:  379 SIKIQFYEAKDERNVYVKNLPL-HFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSN 663
            S+K  F   KD+ NV+V++LP   +   +L ELF+P+G I S KL+        IGFVR++S  EAE+AI  +NKKNLC   N + V C+ +  ++
Sbjct:   16 SVKFAFENEKDKLNVFVQHLPRSDYTTDDLMELFKPFGVITSAKLLDSMKGPTGIGFVRFSSPTEAEKAIKMMNKKNLCLGENTKAVTCKLADKAD 111

[Close]

BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Match: G7YNS1 (RNA-binding motif single-stranded-interacting protein 3 (Fragment) OS=Clonorchis sinensis OX=79923 GN=CLF_104188 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.562e-11
Identity = 51/160 (31.87%), Postives = 76/160 (47.50%), Query Frame = 1

Query:  226 NIKTMLNKMNIKDYNYLNSNGEKLLITFPTISMAKEHLKIISNYLQNNNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSN----PAANFEAHKL 693
            + K M++    K Y +++   E+          AK H+ I    L    L  +K      KD  NVYV++LPL F + +L  LFQ +G + S KL++       IGFVRY   E+AE+AI ++N   L   +N   V C+ +  +N    PA    A  L
Sbjct:  233 SCKAMISNGICKGYGFIDCASEE------DAEKAKNHI-IEQAKLTGRKL-LVKFAHENEKDVHNVYVRHLPLDFTKEKLEALFQKFGQVTSVKLLENEDRLTGIGFVRYALAEQAEKAIEQLNAAKLVLGDNTAPVMCKLADKANTRRRPATAAHATTL 384

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: pabpc1l (embryonic polyadenylate-binding protein B-like [Source:NCBI gene;Acc:103022532])

HSP 1 Score: 53.5286 bits (127), Expect = 1.743e-7
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1

Query:  382 IKIQFYEAKDER-------NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            +K +F + K ER       N+YVKNL     + +L + F PYG I S K++ +   +   GFV ++S EEA +A+ E+N +
Sbjct:  276 LKRKFEQIKQERLNRYQGVNLYVKNLDDGIDDDKLRKEFAPYGTITSAKVMTEGGLSKGFGFVCFSSPEEATKAVTEMNGR 356

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: pabpc1l (embryonic polyadenylate-binding protein B-like [Source:NCBI gene;Acc:103022532])

HSP 1 Score: 53.5286 bits (127), Expect = 1.837e-7
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1

Query:  382 IKIQFYEAKDER-------NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            +K +F + K ER       N+YVKNL     + +L + F PYG I S K++ +   +   GFV ++S EEA +A+ E+N +
Sbjct:  303 LKRKFEQIKQERLNRYQGVNLYVKNLDDGIDDDKLRKEFAPYGTITSAKVMTEGGLSKGFGFVCFSSPEEATKAVTEMNGR 383

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:103034850])

HSP 1 Score: 53.1434 bits (126), Expect = 1.860e-7
Identity = 28/106 (26.42%), Postives = 55/106 (51.89%), Query Frame = 1

Query:  358 LQNNNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTN-NNSIGFVRYTSKEEAERAINEINKKNL----CFLNNERTVRCEFSKSS 660
            L+NN + + ++   + +D  N+Y+ NLP+   E EL  L +P+G +IS ++++ +   +  +GF R  S E+ +  I+  N K +      L     + C+F+   
Sbjct:  117 LKNNGVQA-QMAKQQEQDPTNLYLSNLPVSMDEQELENLLKPFGQVISTRILRDAHGVSRGVGFARMESTEKCDAVISHFNGKFIKSASGMLGASEPLLCKFADGG 221

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:103034850])

HSP 1 Score: 52.7582 bits (125), Expect = 2.176e-7
Identity = 28/103 (27.18%), Postives = 55/103 (53.40%), Query Frame = 1

Query:  358 LQNNNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTN-NNSIGFVRYTSKEEAERAINEINKKNL----CFLNNERTVRCEFS 651
            L+NN + + ++   + +D  N+Y+ NLP+   E EL  L +P+G +IS ++++ +   +  +GF R  S E+ +  I+  N K +      L     + C+F+
Sbjct:   91 LKNNGVQA-QMAKQQEQDPTNLYLSNLPVSMDEQELENLLKPFGQVISTRILRDAHGVSRGVGFARMESTEKCDAVISHFNGKFIKSASGMLGASEPLLCKFA 192

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Match: ENSAMXT00000035946.1 (polyadenylate-binding protein 1-like [Source:NCBI gene;Acc:103030422])

HSP 1 Score: 52.373 bits (124), Expect = 3.789e-7
Identity = 27/81 (33.33%), Postives = 45/81 (55.56%), Query Frame = 1

Query:  382 IKIQFYEAKDER-------NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            +K +F + K +R       N+YVKNL     +  L + F P+G I S K++ +   +   GFV ++S EEA +A+ E+N +
Sbjct:  276 LKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909])

HSP 1 Score: 53.1434 bits (126), Expect = 3.030e-8
Identity = 23/67 (34.33%), Postives = 38/67 (56.72%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKS-TNNNSIGFVRYTSKEEAERAINEINKK 603
            +D  N+Y+ NLP+   E EL  + +PYG +IS ++++ +   +  +GF R  S E+ E  I   N K
Sbjct:   35 QDPTNLYISNLPMSMDEQELEGMLKPYGQVISTRILRDANGTSRGVGFARMESTEKCEAVIQNFNGK 101

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663])

HSP 1 Score: 53.5286 bits (127), Expect = 3.819e-8
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1

Query:  382 IKIQFYEAKDER-------NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            +K +F   K ER       N+YVKNL  +  + +L + F PYG I S K++ +   +   GFV ++S EEA +A+ E+N +
Sbjct:  279 LKRKFEMLKQERISRYQGVNLYVKNLDDNIDDEQLRKEFAPYGTITSTKVMSEEGRSKGFGFVCFSSPEEATKAVTEMNGR 359

HSP 2 Score: 47.7506 bits (112), Expect = 2.525e-6
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 1

Query:  403 AKDERNVYVKNLPLHFKETELSELFQPYG-----CIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTV 636
            AK+  NVY+KN      E +L E F  +G     C++S +       +   GFV +   E+A+RA+NE+N K L    N RTV
Sbjct:  190 AKEFTNVYIKNFGDDMDEDKLREFFGKFGKALSVCVMSDEC----GKSRGFGFVSFEQHEDAQRAVNEMNGKEL----NGRTV 264

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909])

HSP 1 Score: 52.7582 bits (125), Expect = 5.897e-8
Identity = 23/67 (34.33%), Postives = 38/67 (56.72%), Query Frame = 1

Query:  406 KDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKS-TNNNSIGFVRYTSKEEAERAINEINKK 603
            +D  N+Y+ NLPL   E EL  + +P+G +IS ++++ +   +  +GF R  S E+ E  I   N K
Sbjct:  134 QDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDANGTSRGVGFARMESTEKCEAVIQHFNGK 200

HSP 2 Score: 45.8246 bits (107), Expect = 9.162e-6
Identity = 22/66 (33.33%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  418 NVYVKNLPLHFKETELSELFQPYGCIIS-KKLIQKSTNN-NSIGFVRYTSKEEAERAINEINKKNL 609
            N+Y++ LP    + +L++L QPYG I+S K ++ K+TN     GFV + S   A++A+  +    +
Sbjct:   59 NLYIRGLPPGTTDQDLTKLCQPYGKIVSTKAILDKNTNQCKGYGFVHFDSPAAAQKAVTALKANGV 124

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007448.1 (pep scaffold:Pmarinus_7.0:GL479027:131562:138944:-1 gene:ENSPMAG00000006727.1 transcript:ENSPMAT00000007448.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 48.1358 bits (113), Expect = 2.091e-7
Identity = 22/68 (32.35%), Postives = 36/68 (52.94%), Query Frame = 1

Query:  412 ERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNN--NSIGFVRYTSKEEAERAINEINKKNL 609
            + N+Y++ LP H  + +L +L  PYG I+S K I   T N     GFV + S   A++A+  +    +
Sbjct:   54 KTNLYIRGLPPHTSDQDLVKLCHPYGKIVSTKAILDKTTNQCKGYGFVDFDSPTAAQKAVTALKATGI 121

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663])

HSP 1 Score: 50.0618 bits (118), Expect = 3.876e-7
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 1

Query:  382 IKIQFYEAKDER-------NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            +K +F   K ER       N+YVKNL  +  +  L + F P+G I S K++ +   +   GFV ++S EEA +A+ E+N +
Sbjct:  137 LKRKFEMLKQERMSKYQGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVMMEEGRSRGFGFVCFSSPEEATKAVTEMNGR 217

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Yeast
Match: PAB1 (Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex [Source:SGD;Acc:S000000967])

HSP 1 Score: 46.595 bits (109), Expect = 4.040e-6
Identity = 24/63 (38.10%), Postives = 40/63 (63.49%), Query Frame = 1

Query:  418 NVYVKNLPLHFKETELSELFQPYGCIISKKLIQ-KSTNNNSIGFVRYTSKEEAERAINEINKK 603
            N++VKNL     + +L E F PYG I S K+++ ++  +   GFV +++ EEA +AI E N++
Sbjct:  323 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQ 385

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO49588 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGR7])

HSP 1 Score: 58.5362 bits (140), Expect = 3.046e-10
Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 1

Query:  400 EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQ-KSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRC 642
            + +D  N+Y++NLP +  E  L  +F  YG +IS ++++ K TN+  +GF R  S E+ E+ I + NKK    L  E ++RC
Sbjct:   89 QEQDPTNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKDFNKK---MLPGEVSLRC 167

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO34879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SN30])

HSP 1 Score: 58.5362 bits (140), Expect = 1.004e-9
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 1

Query:  418 NVYVKNLPLHFKETELSELFQPYGCIISKKLIQK-STNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVR 639
            N+Y+  LP   KE E+  LF+P+G II+ K+++  S      GFVR+  + EA+ AI+++N K L   N + TV+
Sbjct:   97 NLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLNNKTLPGTNVKLTVK 171

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO29519 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T3E7])

HSP 1 Score: 50.8322 bits (120), Expect = 7.216e-8
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 1

Query:  400 EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKL-IQKSTN-NNSIGFVRYTSKEEAERAINEIN 597
            E  D  N+++ +LP  F + +L + FQP+G +IS K+ I K TN +   GFV Y +   A+ AI  +N
Sbjct:   69 EGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMN 136

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO33206 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSV8])

HSP 1 Score: 50.8322 bits (120), Expect = 4.658e-7
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1

Query:  382 IKIQFYEAKDER-------NVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNN-SIGFVRYTSKEEAERAINEINKKNL 609
            +K +  + + ER       N+Y+KNL     +  L E F PYG I S K+++    N+   GFV ++S EEA +A+ E+N + L
Sbjct:  279 VKAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRIL 362

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Match: EDO35559 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SL64])

HSP 1 Score: 49.6766 bits (117), Expect = 9.201e-7
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 1

Query:  400 EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKL-IQKSTN-NNSIGFVRYTSKEEAERAINEIN 597
            E  D  N+++ +LP  F + +L + FQP+G +IS K+ I K TN +   GFV Y +   A+ AI  +N
Sbjct:  293 EGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMN 360

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:101157928])

HSP 1 Score: 57.3806 bits (137), Expect = 7.844e-9
Identity = 28/91 (30.77%), Postives = 50/91 (54.95%), Query Frame = 1

Query:  400 EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQK-STNNNSIGFVRYTSKEEAERAINEINKKNLCF----LNNERTVRCEFSKS 657
            + +D  N+Y+ NLPL   E EL ++ QP+G ++S ++++  S N+  +GF R  + E+    I+  N K L      L   + + C+F+ S
Sbjct:  115 QEQDPTNLYISNLPLSVDEKELEKMLQPFGQVVSTRILRDYSGNSRGVGFARMDTTEQCNGVISHFNGKFLKLASGSLAPSQPLLCKFADS 205

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:101157928])

HSP 1 Score: 56.9954 bits (136), Expect = 9.031e-9
Identity = 28/91 (30.77%), Postives = 50/91 (54.95%), Query Frame = 1

Query:  400 EAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQK-STNNNSIGFVRYTSKEEAERAINEINKKNLCF----LNNERTVRCEFSKS 657
            + +D  N+Y+ NLPL   E EL ++ QP+G ++S ++++  S N+  +GF R  + E+    I+  N K L      L   + + C+F+ S
Sbjct:  115 QEQDPTNLYISNLPLSVDEKELEKMLQPFGQVVSTRILRDYSGNSRGVGFARMDTTEQCNGVISHFNGKFLKLASGSLAPSQPLLCKFADS 205

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: pabpc1l (embryonic polyadenylate-binding protein [Source:NCBI gene;Acc:101167536])

HSP 1 Score: 54.299 bits (129), Expect = 9.196e-8
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 1

Query:  367 NNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            + L   +IQ Y+     N+YVKNL     +  L + F PYG I S K++ ++  +   GFV ++S EEA +A+ E+N +
Sbjct:  281 DQLKQDRIQRYQGV---NLYVKNLDDSIDDERLRKEFSPYGTITSAKVMTEAGQSKGFGFVCFSSPEEATKAVTEMNGR 356

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: pabpc1l (embryonic polyadenylate-binding protein [Source:NCBI gene;Acc:101167536])

HSP 1 Score: 54.299 bits (129), Expect = 9.379e-8
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 1

Query:  367 NNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            + L   +IQ Y+     N+YVKNL     +  L + F PYG I S K++ ++  +   GFV ++S EEA +A+ E+N +
Sbjct:  281 DQLKQDRIQRYQGV---NLYVKNLDDSIDDERLRKEFSPYGTITSAKVMTEAGQSKGFGFVCFSSPEEATKAVTEMNGR 356

[Close]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Match: pabpc1l (embryonic polyadenylate-binding protein [Source:NCBI gene;Acc:101167536])

HSP 1 Score: 53.9138 bits (128), Expect = 1.066e-7
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 1

Query:  367 NNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKK 603
            + L   +IQ Y+     N+YVKNL     +  L + F PYG I S K++ ++  +   GFV ++S EEA +A+ E+N +
Sbjct:  256 DQLKQDRIQRYQGV---NLYVKNLDDSIDDERLRKEFSPYGTITSAKVMTEAGQSKGFGFVCFSSPEEATKAVTEMNGR 331

[Close]

BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000010632.1 (SMESG000010632.1)

HSP 1 Score: 525.398 bits (1352), Expect = 0.000e+0
Identity = 292/295 (98.98%), Postives = 292/295 (98.98%), Query Frame = 1

Query:   91 MHTNNGENFIMQPYQFGSLPSSQRQDSNTFPKRLILFGIQSHNQDNIKTMLNKMNIKDYNYLNSNGEKLLITFPTISMAKEHLKIISNYLQNNNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSNPAANFEAHKLNSNYLISSQVPRFQNLRYQEVQNPISNNFQSNSINDYNQLINQFSNMYVXXXXXXXXXXXXXXIPIYLPFPGTYQGYPYLFXXXXXXXXXXXPP 975
            MHTNNGENFIMQPYQFGSLPSSQRQDSNTFPKRLILFGIQSHNQDNIKTMLNKMNIKDYNYLNSNGEKLLITF TISMAKEHLKIISNYLQNNNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSNPAANFEAHKLNSNY  SSQVPRFQNLRYQEVQNPISNNFQSNSINDYNQLINQFSNMYVYANNQYYQGYNAPNIPIYLPFPGTYQGYPYLFYSSNNNQNYNYPP
Sbjct:    1 MHTNNGENFIMQPYQFGSLPSSQRQDSNTFPKRLILFGIQSHNQDNIKTMLNKMNIKDYNYLNSNGEKLLITFLTISMAKEHLKIISNYLQNNNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSNPAANFEAHKLNSNYFPSSQVPRFQNLRYQEVQNPISNNFQSNSINDYNQLINQFSNMYVYANNQYYQGYNAPNIPIYLPFPGTYQGYPYLFYSSNNNQNYNYPP 295

[Close]

BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000010632.1 (SMESG000010632.1)

HSP 1 Score: 503.827 bits (1296), Expect = 0.000e+0
Identity = 282/285 (98.95%), Postives = 282/285 (98.95%), Query Frame = 1

Query:  121 MQPYQFGSLPSSQRQDSNTFPKRLILFGIQSHNQDNIKTMLNKMNIKDYNYLNSNGEKLLITFPTISMAKEHLKIISNYLQNNNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSNPAANFEAHKLNSNYLISSQVPRFQNLRYQEVQNPISNNFQSNSINDYNQLINQFSNMYVXXXXXXXXXXXXXXIPIYLPFPGTYQGYPYLFXXXXXXXXXXXPP 975
            MQPYQFGSLPSSQRQDSNTFPKRLILFGIQSHNQDNIKTMLNKMNIKDYNYLNSNGEKLLITF TISMAKEHLKIISNYLQNNNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSNPAANFEAHKLNSNY  SSQVPRFQNLRYQEVQNPISNNFQSNSINDYNQLINQFSNMYVYANNQYYQGYNAPNIPIYLPFPGTYQGYPYLFYSSNNNQNYNYPP
Sbjct:    1 MQPYQFGSLPSSQRQDSNTFPKRLILFGIQSHNQDNIKTMLNKMNIKDYNYLNSNGEKLLITFLTISMAKEHLKIISNYLQNNNLDSIKIQFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSNPAANFEAHKLNSNYFPSSQVPRFQNLRYQEVQNPISNNFQSNSINDYNQLINQFSNMYVYANNQYYQGYNAPNIPIYLPFPGTYQGYPYLFYSSNNNQNYNYPP 285

[Close]

BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000008202.1 (SMESG000008202.1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.577e-18
Identity = 56/184 (30.43%), Postives = 103/184 (55.98%), Query Frame = 1

Query:  133 QFGSLPSSQ-RQDSNTFPKRLILF--GIQ-SHNQDNIKTMLNKM-NIKDYNYLNSNGE---KLLITFPTISMAKEHLKIISN-YLQNNNLDSIKIQFYEAKDERNVYVKNLPLH--FKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFS 651
             FGSLP +Q R+  N+   +  L+  G+Q S   ++++ +++ +   K    + S+G+      I   T   A++ ++I+ N  + + +  ++K  +   KD+ NVYV+NLP    F  + L ELF+ YG ++S KL+Q        GFVRY+S +EA+RA++ +N + L   N+++ V C+ +
Sbjct:  133 HFGSLPPTQIRKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLA 316

[Close]

BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000008202.1 (SMESG000008202.1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.472e-16
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 1

Query:  379 SIKIQFYEAKDERNVYVKNLPLH--FKETELSELFQPYGCIISKKLIQKSTNNNSIGFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFS 651
            ++K  +   KD+ NVYV+NLP    F  + L ELF+ YG ++S KL+Q        GFVRY+S +EA+RA++ +N + L   N+++ V C+ +
Sbjct:  238 AVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLA 330

[Close]

BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Match: SMESG000005424.1 (SMESG000005424.1)

HSP 1 Score: 51.2174 bits (121), Expect = 5.871e-7
Identity = 24/67 (35.82%), Postives = 41/67 (61.19%), Query Frame = 1

Query:  403 AKDERNVYVKNLPLHFKETELSELFQPYGCIISKKL-IQKSTNNNSI-GFVRYTSKEEAERAINEIN 597
              D  NV++ +LP  F + EL+++F P+G +IS K+ I ++TN +   GFV + +   A+ AI  +N
Sbjct:  332 GPDGSNVFIYHLPQEFGDAELAQMFSPFGTVISAKVYIDRATNQSKCFGFVSFDNSNSAQAAIQAMN 398

The following BLAST results are available for this feature:

BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
BLAST of RNA binding motif single stranded interacting vs. TrEMBL
BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
BLAST of RNA binding motif single stranded interacting vs. Ensembl Yeast
BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST

BLAST of RNA binding motif single stranded interacting vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RBMS1	8.425e-8	35.82	RNA binding motif single stranded interacting prot...	[more]
RBMS1	8.425e-8	35.82	RNA binding motif single stranded interacting prot...	[more]
RBMS1	8.425e-8	35.82	RNA binding motif single stranded interacting prot...	[more]
RBMS1	8.937e-8	35.82	RNA binding motif single stranded interacting prot...	[more]
RBMS2	9.621e-8	33.33	RNA binding motif single stranded interacting prot...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tiar-1	1.047e-7	35.00	TIA-1/TIAL RNA binding protein homolog [Source:Un...	[more]
tiar-1	1.089e-7	35.00	TIA-1/TIAL RNA binding protein homolog [Source:Un...	[more]
tiar-1	1.164e-7	35.00	TIA-1/TIAL RNA binding protein homolog [Source:Un...	[more]
tiar-1	1.311e-7	35.00	TIA-1/TIAL RNA binding protein homolog [Source:Un...	[more]
exc-7	5.881e-7	27.78	pep chromosome:WBcel235:II:9575971:9581490:1 gene:...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
elav	2.396e-9	35.00	gene:FBgn0260400 transcript:FBtr0100254	[more]
elav	2.396e-9	35.00	gene:FBgn0260400 transcript:FBtr0114366	[more]
elav	2.431e-9	35.00	gene:FBgn0260400 transcript:FBtr0307173	[more]
elav	2.431e-9	35.00	gene:FBgn0260400 transcript:FBtr0070091	[more]
shep	1.491e-8	36.92	gene:FBgn0052423 transcript:FBtr0333288	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbms1b	6.241e-8	34.94	RNA binding motif, single stranded interacting pro...	[more]
pabpc1l	9.189e-8	35.80	poly(A) binding protein, cytoplasmic 1-like [Sourc...	[more]
pabpc1l	9.189e-8	35.80	poly(A) binding protein, cytoplasmic 1-like [Sourc...	[more]
CU655816.1	1.036e-7	35.80	pep chromosome:GRCz11:CHR_ALT_CTG8_1_26:45331152:4...	[more]
pabpc1l	1.083e-7	35.80	poly(A) binding protein, cytoplasmic 1-like [Sourc...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbms1	3.832e-8	34.78	RNA binding motif, single stranded interacting pro...	[more]
rbms1	4.855e-8	35.82	RNA binding motif, single stranded interacting pro...	[more]
rbms1	4.950e-8	34.78	RNA binding motif, single stranded interacting pro...	[more]
rbms1	5.360e-8	35.82	RNA binding motif, single stranded interacting pro...	[more]
rbms1	5.389e-8	35.82	RNA binding motif, single stranded interacting pro...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Pabpc1l	1.408e-8	37.04	poly(A) binding protein, cytoplasmic 1-like [Sourc...	[more]
Rbms1	8.491e-8	35.82	RNA binding motif, single stranded interacting pro...	[more]
Rbms1	9.463e-8	35.82	RNA binding motif, single stranded interacting pro...	[more]
Rbms1	9.609e-8	35.82	RNA binding motif, single stranded interacting pro...	[more]
Pabpc4l	1.558e-7	39.06	poly(A) binding protein, cytoplasmic 4-like [Sourc...	[more]

BLAST of RNA binding motif single stranded interacting vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P16914\|ELAV_DROME	2.437e-8	35.00	Protein elav OS=Drosophila melanogaster OX=7227 GN...	[more]
sp\|P23241\|ELAV_DROVI	2.622e-8	35.00	Protein elav OS=Drosophila virilis OX=7244 GN=elav...	[more]
sp\|B4LFQ9\|SHEP_DROVI	1.369e-7	31.65	Protein alan shepard OS=Drosophila virilis OX=7244...	[more]
sp\|B4IX08\|SHEP_DROGR	1.409e-7	31.65	Protein alan shepard OS=Drosophila grimshawi OX=72...	[more]
sp\|B4HUE4\|SHEP_DROSE	1.615e-7	36.92	Protein alan shepard OS=Drosophila sechellia OX=72...	[more]

BLAST of RNA binding motif single stranded interacting vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A2H1CWG4	6.397e-15	44.79	RNA binding motif single stranded interacting OS=F...	[more]
A0A504YD29	7.204e-15	44.79	RNA binding motif single stranded interacting OS=F...	[more]
A0A3P8HPU7	2.332e-14	41.67	RRM domain-containing protein OS=Echinostoma capro...	[more]
A0A183ARW3	2.464e-14	41.67	RRM domain-containing protein OS=Echinostoma capro...	[more]
G7YNS1	2.562e-11	31.88	RNA-binding motif single-stranded-interacting prot...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
pabpc1l	1.743e-7	35.80	embryonic polyadenylate-binding protein B-like [So...	[more]
pabpc1l	1.837e-7	35.80	embryonic polyadenylate-binding protein B-like [So...	[more]
rbms1a	1.860e-7	26.42	RNA-binding motif, single-stranded-interacting pro...	[more]
rbms1a	2.176e-7	27.18	RNA-binding motif, single-stranded-interacting pro...	[more]
ENSAMXT00000035946.1	3.789e-7	33.33	polyadenylate-binding protein 1-like [Source:NCBI ...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RBMS2	3.030e-8	34.33	RNA binding motif single stranded interacting prot...	[more]
pabpc4	3.819e-8	35.80	poly(A) binding protein, cytoplasmic 4 (inducible ...	[more]
RBMS2	5.897e-8	34.33	RNA binding motif single stranded interacting prot...	[more]
ENSPMAT00000007448.1	2.091e-7	32.35	pep scaffold:Pmarinus_7.0:GL479027:131562:138944:-...	[more]
pabpc4	3.876e-7	34.57	poly(A) binding protein, cytoplasmic 4 (inducible ...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
PAB1	4.040e-6	38.10	Poly(A) binding protein; part of the 3'-end RNA-pr...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO49588	3.046e-10	36.59	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO34879	1.004e-9	38.67	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO29519	7.216e-8	38.24	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO33206	4.658e-7	34.52	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO35559	9.201e-7	38.24	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of RNA binding motif single stranded interacting vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbms1a	7.844e-9	30.77	RNA-binding motif, single-stranded-interacting pro...	[more]
rbms1a	9.031e-9	30.77	RNA-binding motif, single-stranded-interacting pro...	[more]
pabpc1l	9.196e-8	35.44	embryonic polyadenylate-binding protein [Source:NC...	[more]
pabpc1l	9.379e-8	35.44	embryonic polyadenylate-binding protein [Source:NC...	[more]
pabpc1l	1.066e-7	35.44	embryonic polyadenylate-binding protein [Source:NC...	[more]

BLAST of RNA binding motif single stranded interacting vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000010632.1	0.000e+0	98.98	SMESG000010632.1	[more]
SMESG000010632.1	0.000e+0	98.95	SMESG000010632.1	[more]
SMESG000008202.1	5.577e-18	30.43	SMESG000008202.1	[more]
SMESG000008202.1	2.472e-16	38.71	SMESG000008202.1	[more]
SMESG000005424.1	5.871e-7	35.82	SMESG000005424.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30020000 ID=SMED30020000|Name=RNA binding motif single stranded interacting|organism=Schmidtea mediterranea sexual|type=transcript|length=1039bp
GCTAAAAATAGATTTAGGTAAAGTCGACTAGTAACAAATGTCATTGTATT
ATTATTTTTCTGTTGGCATATTTTGGCAATTTTTTTAGTTATGCATACAA
ATAATGGCGAAAACTTTATCATGCAACCATATCAATTTGGGTCTCTACCA
TCTTCTCAAAGACAAGATTCGAATACTTTCCCGAAACGTTTAATACTTTT
TGGAATTCAAAGTCACAATCAAGACAACATTAAAACAATGCTTAACAAAA
TGAATATAAAGGATTACAATTATCTTAATTCAAATGGAGAAAAGTTATTG
ATTACTTTTCCAACAATTTCAATGGCAAAAGAACACCTAAAAATTATATC
AAATTATTTACAGAATAATAACCTTGATTCTATAAAGATTCAATTTTATG
AGGCAAAAGACGAAAGAAATGTTTATGTTAAAAATTTGCCATTGCATTTC
AAAGAAACAGAATTGTCTGAATTATTTCAACCGTATGGCTGTATAATATC
AAAAAAATTAATCCAAAAATCCACGAATAATAATAGTATTGGATTTGTTC
GATACACTTCAAAAGAGGAAGCTGAAAGAGCAATTAATGAAATAAATAAA
AAAAATCTTTGTTTTCTTAACAACGAAAGGACTGTCCGGTGTGAATTTTC
AAAATCATCAAATCCAGCTGCAAACTTCGAAGCTCACAAACTGAATAGTA
ACTATTTGATTTCCAGTCAAGTGCCAAGGTTTCAAAATCTTCGGTATCAA
GAAGTTCAAAATCCGATTTCTAACAACTTTCAAAGCAATTCGATTAATGA
TTACAATCAGTTAATTAATCAATTTTCGAATATGTACGTTTACGCTAACA
ATCAGTACTACCAAGGCTATAATGCACCAAACATTCCAATTTACCTGCCT
TTCCCCGGGACCTATCAAGGATATCCCTATCTCTTCTATTCCTCGAATAA
TAATCAAAATTACAACTACCCTCCATAGTGTACTTCTATTTTGTTATAAT
CAGATATAAATATATCTATTTTTTGAATATTAAAAAAAA

protein sequence of SMED30020000-orf-1

>SMED30020000-orf-1 ID=SMED30020000-orf-1|Name=SMED30020000-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=296bp
MHTNNGENFIMQPYQFGSLPSSQRQDSNTFPKRLILFGIQSHNQDNIKTM
LNKMNIKDYNYLNSNGEKLLITFPTISMAKEHLKIISNYLQNNNLDSIKI
QFYEAKDERNVYVKNLPLHFKETELSELFQPYGCIISKKLIQKSTNNNSI
GFVRYTSKEEAERAINEINKKNLCFLNNERTVRCEFSKSSNPAANFEAHK
LNSNYLISSQVPRFQNLRYQEVQNPISNNFQSNSINDYNQLINQFSNMYV
YANNQYYQGYNAPNIPIYLPFPGTYQGYPYLFYSSNNNQNYNYPP*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000034	epidermis
PLANA:0000070	intestinal phagocyte
PLANA:0000099	neuron
PLANA:0000101	muscle cell
PLANA:0000140	anterior region of the whole animal
PLANA:0002032	epidermal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 158..178
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 91..270
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 110..185 e-value: 5.6E-10 score: 49.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 111..173 e-value: 4.2E-14 score: 52.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 109..189 score: 15.613
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 40..200 e-value: 1.3E-18 score: 69.2
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 104..193