60S ribosomal protein L13a
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30019903 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 15
Homology
BLAST of 60S ribosomal protein L13a vs. Ensembl Human
Match: RPL13A (ribosomal protein L13a [Source:HGNC Symbol;Acc:HGNC:10304]) HSP 1 Score: 258.455 bits (659), Expect = 2.138e-87 Identity = 124/196 (63.27%), Postives = 158/196 (80.61%), Query Frame = 3 Query: 75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 +VLV+D GHLLGRLA VAK L G++VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL+VVRLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+ +L+++A +K+ KY E+L G Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHG 200
BLAST of 60S ribosomal protein L13a vs. Ensembl Human
Match: RPL13A (ribosomal protein L13a [Source:HGNC Symbol;Acc:HGNC:10304]) HSP 1 Score: 250.751 bits (639), Expect = 2.536e-84 Identity = 124/204 (60.78%), Postives = 158/204 (77.45%), Query Frame = 3 Query: 75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRG--------MIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 +VLV+D GHLLGRLA VAK L G++VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RG M+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL+VVRLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+ +L+++A +K+ KY E+L G Sbjct: 4 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGEQSVGTAGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHG 207
BLAST of 60S ribosomal protein L13a vs. Ensembl Human
Match: RPL13A (ribosomal protein L13a [Source:HGNC Symbol;Acc:HGNC:10304]) HSP 1 Score: 184.882 bits (468), Expect = 2.492e-59 Identity = 86/139 (61.87%), Postives = 112/139 (80.58%), Query Frame = 3 Query: 246 MNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 MNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL+VVRLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+ +L+++A +K+ KY E+L G Sbjct: 1 MNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHG 139
BLAST of 60S ribosomal protein L13a vs. Ensembl Celegans
Match: rpl-16 (60S ribosomal protein L13a [Source:UniProtKB/Swiss-Prot;Acc:Q27389]) HSP 1 Score: 216.083 bits (549), Expect = 4.366e-71 Identity = 106/202 (52.48%), Postives = 144/202 (71.29%), Query Frame = 3 Query: 60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665 M +S + ++ID HLLGRLA+ VAK LQG +VV++R E++ ISG+F+R+KLKY FL+KR N NP+RG FH R+P KI WRT+RGM+PHKT RG AL ++ +EGVPA Y K K PSA R RL+P RKFC +GRLSHEVGW++Q VV+ LE KRK K A ++ ++K+ KL +A + K+A+Y +I+ G+ Sbjct: 1 MGLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGY 201
BLAST of 60S ribosomal protein L13a vs. Ensembl Celegans
Match: rpl-16 (60S ribosomal protein L13a [Source:UniProtKB/Swiss-Prot;Acc:Q27389]) HSP 1 Score: 216.083 bits (549), Expect = 4.366e-71 Identity = 106/202 (52.48%), Postives = 144/202 (71.29%), Query Frame = 3 Query: 60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665 M +S + ++ID HLLGRLA+ VAK LQG +VV++R E++ ISG+F+R+KLKY FL+KR N NP+RG FH R+P KI WRT+RGM+PHKT RG AL ++ +EGVPA Y K K PSA R RL+P RKFC +GRLSHEVGW++Q VV+ LE KRK K A ++ ++K+ KL +A + K+A+Y +I+ G+ Sbjct: 1 MGLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGY 201
BLAST of 60S ribosomal protein L13a vs. Ensembl Fly
Match: RpL13A (gene:FBgn0037351 transcript:FBtr0078705) HSP 1 Score: 222.246 bits (565), Expect = 1.839e-73 Identity = 104/201 (51.74%), Postives = 150/201 (74.63%), Query Frame = 3 Query: 63 SVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665 ++ + +VID GHLLGRLA+ VAK LQG +V +VR E++N+SG FYRNK+K+ +L+KR N NP+RGPFH R+PS+I ++ +RGMIPHKTKRG AAL +++VF+G+P+PYDK ++ +P A+RV+ L+ +RK+CQ+GRLSHEVGW YQ V+ +LE KRKAK + +E KKL KA ++ +N+I+ +G+ Sbjct: 3 GLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203
BLAST of 60S ribosomal protein L13a vs. Ensembl Fly
Match: RpL13A (gene:FBgn0037351 transcript:FBtr0335214) HSP 1 Score: 110.923 bits (276), Expect = 3.596e-31 Identity = 47/86 (54.65%), Postives = 67/86 (77.91%), Query Frame = 3 Query: 63 SVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRG 320 ++ + +VID GHLLGRLA+ VAK LQG +V +VR E++N+SG FYRNK+K+ +L+KR N NP+RGPFH R+PS+I ++ +RG Sbjct: 3 GLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRG 88
BLAST of 60S ribosomal protein L13a vs. Ensembl Zebrafish
Match: rpl13a (ribosomal protein L13a [Source:ZFIN;Acc:ZDB-GENE-030131-168]) HSP 1 Score: 260.381 bits (664), Expect = 3.012e-88 Identity = 124/197 (62.94%), Postives = 157/197 (79.70%), Query Frame = 3 Query: 72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 KVL+ID GHLLGRL+ VAK L G ++V+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL++VRLKP RKF LGRL+HEVGWKYQ++ +TLEEKRK KA L YSK+K KL ++A K+A Y ++L K+G Sbjct: 6 NKVLIIDGRGHLLGRLSAIVAKQVLLGHKIVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKLRYSKKKVEMKLTKQAEKNVESKIAVYTDVLKKYG 202
BLAST of 60S ribosomal protein L13a vs. Ensembl Zebrafish
Match: rpl13a (ribosomal protein L13a [Source:ZFIN;Acc:ZDB-GENE-030131-168]) HSP 1 Score: 260.381 bits (664), Expect = 3.012e-88 Identity = 124/197 (62.94%), Postives = 157/197 (79.70%), Query Frame = 3 Query: 72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 KVL+ID GHLLGRL+ VAK L G ++V+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL++VRLKP RKF LGRL+HEVGWKYQ++ +TLEEKRK KA L YSK+K KL ++A K+A Y ++L K+G Sbjct: 6 NKVLIIDGRGHLLGRLSAIVAKQVLLGHKIVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKLRYSKKKVEMKLTKQAEKNVESKIAVYTDVLKKYG 202
BLAST of 60S ribosomal protein L13a vs. Ensembl Xenopus
Match: dtnbp1 (dystrobrevin binding protein 1 [Source:Xenbase;Acc:XB-GENE-5812147]) HSP 1 Score: 233.417 bits (594), Expect = 8.219e-78 Identity = 110/178 (61.80%), Postives = 146/178 (82.02%), Query Frame = 3 Query: 129 VAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 VAK L G++VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KVF+G+P PYDK K+ +P+AL++VRLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y+K+K KL+++A K++KY ++L ++G Sbjct: 2 VAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKRKRMVVPAALKIVRLKPTRKFAFLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYNKKKIIVKLRKQAEKNVESKISKYTDVLKQYG 179
BLAST of 60S ribosomal protein L13a vs. Ensembl Mouse
Match: Rpl13a (ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]) HSP 1 Score: 251.906 bits (642), Expect = 6.480e-85 Identity = 121/196 (61.73%), Postives = 157/196 (80.10%), Query Frame = 3 Query: 75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 +VLV+D GHLLGRLA VAK L G++VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+ +P+AL+VVRLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+ +L+++A +K+ K+ E+L G Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVLKTNG 200
BLAST of 60S ribosomal protein L13a vs. Ensembl Mouse
Match: Gm45713 (predicted gene 45713 [Source:MGI Symbol;Acc:MGI:5804828]) HSP 1 Score: 248.44 bits (633), Expect = 1.958e-80 Identity = 121/195 (62.05%), Postives = 156/195 (80.00%), Query Frame = 3 Query: 78 VLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 VLV+D GHLLGRLA VAK L G++VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+ +P+AL+VVRLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+ +L+++A +K+ K+ E+L G Sbjct: 249 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVLKTNG 443
BLAST of 60S ribosomal protein L13a vs. Ensembl Mouse
Match: Rpl13a (ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]) HSP 1 Score: 229.565 bits (584), Expect = 1.107e-76 Identity = 108/167 (64.67%), Postives = 133/167 (79.64%), Query Frame = 3 Query: 75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIR-----------GMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKR 542 +VLV+D GHLLGRLA VAK L G++VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+R GM+PHKTKRG AAL+++KV +G+P PYDK K+ +P+AL+VVRLKP RKF LGRL+HEVGWKYQ+V +TLEEKR Sbjct: 1 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRAPLMRPAVTPTGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 167
BLAST of 60S ribosomal protein L13a vs. Ensembl Mouse
Match: Rpl13a (ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]) HSP 1 Score: 206.068 bits (523), Expect = 3.122e-67 Identity = 107/196 (54.59%), Postives = 140/196 (71.43%), Query Frame = 3 Query: 75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 +VLV+D GHLLGRLA VAK +V+LV KY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+ +P+AL+VVRLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+ +L+++A +K+ K+ E+L G Sbjct: 1 QVLVLDGRGHLLGRLAAIVAK------QVLLV----------------KYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVLKTNG 174
BLAST of 60S ribosomal protein L13a vs. Ensembl Mouse
Match: Rpl13a (ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]) HSP 1 Score: 195.282 bits (495), Expect = 1.968e-63 Identity = 89/132 (67.42%), Postives = 111/132 (84.09%), Query Frame = 3 Query: 75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFC 470 +VLV+D GHLLGRLA VAK L G++VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+ +P+AL+VVRLKP RK C Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKPC 136
BLAST of 60S ribosomal protein L13a vs. UniProt/SwissProt
Match: sp|P40429|RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens OX=9606 GN=RPL13A PE=1 SV=2) HSP 1 Score: 258.455 bits (659), Expect = 1.027e-86 Identity = 124/196 (63.27%), Postives = 158/196 (80.61%), Query Frame = 3 Query: 75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 +VLV+D GHLLGRLA VAK L G++VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL+VVRLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+ +L+++A +K+ KY E+L G Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHG 200
BLAST of 60S ribosomal protein L13a vs. UniProt/SwissProt
Match: sp|Q4R8Z2|RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis OX=9541 GN=RPL13A PE=2 SV=3) HSP 1 Score: 257.684 bits (657), Expect = 2.231e-86 Identity = 123/196 (62.76%), Postives = 158/196 (80.61%), Query Frame = 3 Query: 75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 +VLV+D GHLLGRLA VAK L G++VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL+VVRLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+ +L+++A +K+ KY ++L G Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVLKTHG 200
BLAST of 60S ribosomal protein L13a vs. UniProt/SwissProt
Match: sp|P93099|RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa OX=2762 PE=2 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 3.410e-86 Identity = 117/165 (70.91%), Postives = 139/165 (84.24%), Query Frame = 3 Query: 72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWY 566 EKV+V+DC GHLLGRLA +AK L GQRVV VRTE++NISGS +RNKLK+ FLKKRMNTNP RGPFH RSP++I+WRTIRGMIPHKT RGAAAL+++K FEGVP PYDKMK+ IP ALRV+RLKP RKFC LGRL+ EVGW++ +V+ LEEKRK K+A +Y Sbjct: 3 EKVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFY 167
BLAST of 60S ribosomal protein L13a vs. UniProt/SwissProt
Match: sp|Q5RA38|RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii OX=9601 GN=RPL13A PE=2 SV=3) HSP 1 Score: 256.144 bits (653), Expect = 7.594e-86 Identity = 123/196 (62.76%), Postives = 158/196 (80.61%), Query Frame = 3 Query: 75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 +VLV+D GHLLGRLA VAK L G++VV+VR E +NISG+FYRNKLKY FL+KRMNT+PSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL+VVRLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+ +L+++A +K+ KY E+L G Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYTEVLKTHG 200
BLAST of 60S ribosomal protein L13a vs. UniProt/SwissProt
Match: sp|Q3SZ90|RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus OX=9913 GN=RPL13A PE=2 SV=3) HSP 1 Score: 255.373 bits (651), Expect = 1.432e-85 Identity = 122/196 (62.24%), Postives = 158/196 (80.61%), Query Frame = 3 Query: 75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 +VLV+D GHLLGRLA VAK L G++VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KVF+G+P PYDK K+ +P+AL+VVRLKP RKF LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+ +L+++A +K+ K+ E+L G Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVLKTHG 200
BLAST of 60S ribosomal protein L13a vs. TrEMBL
Match: I1ZIB7 (60S ribosomal protein L13a OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 387.497 bits (994), Expect = 2.657e-135 Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 3 Query: 60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGA ALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSKQKESKKLKEKAVLATSEKVAKYNEILAKFGH Sbjct: 1 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAGALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSKQKESKKLKEKAVLATSEKVAKYNEILAKFGH 202
BLAST of 60S ribosomal protein L13a vs. TrEMBL
Match: A0A1D1VBK2 (Uncharacterized protein OS=Ramazzottius varieornatus OX=947166 GN=RvY_09439-1 PE=3 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 2.392e-90 Identity = 130/202 (64.36%), Postives = 159/202 (78.71%), Query Frame = 3 Query: 60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665 M + K LV+D GHLLGRLA VAK L GQ VV+VR E +NISGSFYRNKLKY +FL+KRMNTNP RGPFH R+PSKI WRT+RGM+PHKT RG AALDK+KVFEG+PAPYDKMK+ P+ALR +RL P RKFC++GRLS EVGWKYQ V++TLE KRKAKA ++Y+ +K +KL +A + +VAKY +I+ +GH Sbjct: 1 MGFTNKPLVLDGRGHLLGRLAALVAKTLLHGQHVVVVRCEGINISGSFYRNKLKYLDFLRKRMNTNPRRGPFHFRAPSKIFWRTVRGMLPHKTARGQAALDKLKVFEGIPAPYDKMKRQVAPAALRSIRLNPRRKFCEVGRLSAEVGWKYQDVITTLEAKRKAKAGVFYTAKKTEQKLLTQARKTVAPRVAKYQKIIESYGH 202
BLAST of 60S ribosomal protein L13a vs. TrEMBL
Match: A0A2B4T1K0 (60S ribosomal protein L13a OS=Stylophora pistillata OX=50429 GN=RPL13A PE=3 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 7.785e-88 Identity = 128/198 (64.65%), Postives = 165/198 (83.33%), Query Frame = 3 Query: 72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665 EK +VID +GHLLGRLA+ +AK+ L GQR+V+VR E VNISGSF+RNKLKY +FL+KR NT PSRGPFH R+PS+IVWRT+RGMIPHK KRG A++++KVF+GVP P+DK K+ +PSALRVVRLKP RK+C LGRLSHEVGWKY+ V+ TLEEKRKAKAA++Y +K+ +KLK+KA+ +E++ NE+L +G+ Sbjct: 4 EKPIVIDASGHLLGRLASTIAKSLLTGQRIVVVRCEQVNISGSFFRNKLKYLDFLRKRTNTKPSRGPFHFRAPSRIVWRTVRGMIPHKNKRGTEAMNRLKVFDGVPPPHDKEKRMVVPSALRVVRLKPGRKYCVLGRLSHEVGWKYKDVLETLEEKRKAKAAVYYEHKKKVEKLKQKALQNKAEELKSVNEVLENYGY 201
BLAST of 60S ribosomal protein L13a vs. TrEMBL
Match: A0A183WCW8 (Uncharacterized protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS9969 PE=3 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 7.759e-87 Identity = 124/202 (61.39%), Postives = 159/202 (78.71%), Query Frame = 3 Query: 60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665 M +S + ++ID GHLLGRLA VAK LQGQ+VV+VR E++NISGSFYRNKLKY +FLKKRMNTNPSRGP+H R+P+KI WRT+RGM+PHK RG ALD++KVFEG+P PYDK K+ +PSALRV+RLKP RKFC L RLS++VGWKY++++ +E +RKAKAA+WY +QK KK E A + +A Y IL ++G+ Sbjct: 1 MDLSSQAIIIDAQGHLLGRLAAVVAKTLLQGQKVVVVRCENINISGSFYRNKLKYLDFLKKRMNTNPSRGPYHFRAPAKIFWRTVRGMLPHKLHRGKLALDRLKVFEGIPPPYDKKKRMVVPSALRVIRLKPGRKFCVLSRLSNDVGWKYKNIIEKMENRRKAKAAVWYKRQKLMKKPTEAARGRAKKAIAPYQAILKQYGY 202
BLAST of 60S ribosomal protein L13a vs. TrEMBL
Match: W4XS18 (Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 1.269e-86 Identity = 127/201 (63.18%), Postives = 159/201 (79.10%), Query Frame = 3 Query: 60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 MS KVLVID GHLLGRLA+ VAK LQGQ+VV+VR E +NISGSFYRNKLKY +F++KR NT PSRGP+HLRSPS++ WR IRGM+PHK RG AL+++KVFEG PAPYD+ K+ +PSALRV+RLKPNRKFC LGRL+HEVGWKY++++ LEEKRKA+A L Y K+ L+ KAV + +K+A Y +I+ +G Sbjct: 1 MSSFAKVLVIDGRGHLLGRLASIVAKNLLQGQKVVVVRCELINISGSFYRNKLKYMQFMRKRTNTKPSRGPYHLRSPSRMFWRVIRGMLPHKRTRGKDALERLKVFEGCPAPYDRKKRFVVPSALRVMRLKPNRKFCVLGRLAHEVGWKYKNIIEALEEKRKARAHLHYQKELRKSALRRKAVKSVGDKIAPYQKIIEAYG 201
BLAST of 60S ribosomal protein L13a vs. Ensembl Cavefish
Match: rpl13a (ribosomal protein L13a [Source:NCBI gene;Acc:103025160]) HSP 1 Score: 254.603 bits (649), Expect = 4.450e-86 Identity = 122/197 (61.93%), Postives = 155/197 (78.68%), Query Frame = 3 Query: 72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 KVLVID GHLLGRLA VAK L G +VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KVF+G+P PYDK K+ +P+AL++VRLKP RKF L RL+HEVGWKYQ++ +TLEE+RK KA + Y+K+K KL ++A K+ KY IL ++G Sbjct: 6 HKVLVIDGRGHLLGRLAAIVAKQVLLGHKVVIVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKRKRMVVPAALKIVRLKPTRKFALLDRLAHEVGWKYQAITATLEERRKEKAKIRYTKKKAQIKLTKQAEKNVEGKINKYTNILKQYG 202
BLAST of 60S ribosomal protein L13a vs. Ensembl Sea Lamprey
Match: rpl13a (ribosomal protein L13a [Source:ZFIN;Acc:ZDB-GENE-030131-168]) HSP 1 Score: 258.84 bits (660), Expect = 1.615e-88 Identity = 125/197 (63.45%), Postives = 158/197 (80.20%), Query Frame = 3 Query: 72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 +KVL+ID GHLLGRL+ VAK L G +VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+ +P+AL+VVRLKP RKF LGRLSHEVGWKYQ+V +TLEEKRK KA L Y K+K++ L++KA +K+ Y +L ++G Sbjct: 6 QKVLLIDGRGHLLGRLSAIVAKQILIGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMVPHKTKRGQAALDRLKVFDGIPPPYDKRKRMVVPAALKVVRLKPTRKFAVLGRLSHEVGWKYQAVTATLEEKRKQKAKLHYEKKKKTVTLRKKAEKNVEKKICAYTAVLKQYG 202
BLAST of 60S ribosomal protein L13a vs. Ensembl Yeast
Match: RPL16B (Ribosomal 60S subunit protein L16B; N-terminally acetylated, binds 5.8 S rRNA; transcriptionally regulated by Rap1p; homologous to mammalian ribosomal protein L13A and bacterial L13; RPL16B has a paralog, RPL16A, that arose from the whole genome duplication [Source:SGD;Acc:S000005013]) HSP 1 Score: 218.779 bits (556), Expect = 5.707e-73 Identity = 96/167 (57.49%), Postives = 131/167 (78.44%), Query Frame = 3 Query: 66 VSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWY 566 +S+ V+VID HLLGRLA+ +AK L GQ++V+VR E +NISG F+RNKLKY +FL+K N +RGPFH R+PS+I+++ IRGM+ HKT RG AAL+++K+FEG+P PYDK K+ +P ALRV+RLKP RK+ LG+LS VGWKY+ VV+ LE+KRK ++A +Y Sbjct: 1 MSQPVVVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYY 167
BLAST of 60S ribosomal protein L13a vs. Ensembl Yeast
Match: RPL16A (Ribosomal 60S subunit protein L16A; N-terminally acetylated, binds 5.8 S rRNA; transcriptionally regulated by Rap1p; homologous to mammalian ribosomal protein L13A and bacterial L13; RPL16A has a paralog, RPL16B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000001395]) HSP 1 Score: 218.394 bits (555), Expect = 7.098e-73 Identity = 100/169 (59.17%), Postives = 131/169 (77.51%), Query Frame = 3 Query: 60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWY 566 MSV E V+VID GHL+GRLA+ VAK L GQ++V+VR E++NISG F+RNKLKY +FL+K N +RGPFH R+PS+I ++ +RGM+ HKT RG AAL+++KVFEG+P PYDK K+ +P ALRV+RLKP RK+ LG+LS VGWKY+ VV+ LE KRK +A +Y Sbjct: 1 MSV-EPVVVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYY 168
BLAST of 60S ribosomal protein L13a vs. Ensembl Nematostella
Match: EDO38749 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SBZ8]) HSP 1 Score: 259.996 bits (663), Expect = 8.234e-89 Identity = 124/198 (62.63%), Postives = 161/198 (81.31%), Query Frame = 3 Query: 72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665 EK +VID AGHLLGRLA+ VAK+ L GQRVV+VR E + ISG+FYRNKLKY +FL+KR NT PS GPFH R+PS+I WRT+RGMIPHKTK+G A++++KVF+GVP PYDK K+ +PSAL+V+RLKP RKFC LGRLSHEVGWKYQ ++ TLEEKRKAK+ L++ +K+ +KLK+ A L ++++ N+ LA +G+ Sbjct: 4 EKQIVIDGAGHLLGRLASTVAKSILSGQRVVVVRCEKICISGNFYRNKLKYLDFLRKRTNTKPSHGPFHFRAPSRIFWRTVRGMIPHKTKKGTEAMNRMKVFDGVPPPYDKEKRMVVPSALKVIRLKPGRKFCVLGRLSHEVGWKYQDILETLEEKRKAKSKLYFEHKKKVQKLKQTAELNKADELKSVNKTLAGYGY 201
BLAST of 60S ribosomal protein L13a vs. Ensembl Medaka
Match: rpl13a (ribosomal protein L13a [Source:NCBI gene;Acc:101166097]) HSP 1 Score: 259.61 bits (662), Expect = 9.066e-88 Identity = 124/197 (62.94%), Postives = 157/197 (79.70%), Query Frame = 3 Query: 72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662 KVL+ID GHLLGRLA VAK L G +VV+VR E +NISG+FYRNKLKY FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KVF+G+P PYDK K+ +P+AL++VRLKP+RKF LGRL+HEVGWKYQ++ +TLEEKRK KA L Y K+K KL + A K+AKY ++L ++G Sbjct: 29 NKVLLIDGRGHLLGRLAAIVAKQVLLGHKVVIVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKRKRVVVPAALKIVRLKPSRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKLHYVKKKTLVKLSKLAEKNVEGKIAKYTDVLKQYG 225
BLAST of 60S ribosomal protein L13a vs. Planmine SMEST
Match: SMESG000041483.1 (SMESG000041483.1) HSP 1 Score: 387.497 bits (994), Expect = 7.389e-139 Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 3 Query: 60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGA ALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSKQKESKKLKEKAVLATSEKVAKYNEILAKFGH Sbjct: 1 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAGALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSKQKESKKLKEKAVLATSEKVAKYNEILAKFGH 202 The following BLAST results are available for this feature:
BLAST of 60S ribosomal protein L13a vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 3
BLAST of 60S ribosomal protein L13a vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of 60S ribosomal protein L13a vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of 60S ribosomal protein L13a vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of 60S ribosomal protein L13a vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of 60S ribosomal protein L13a vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of 60S ribosomal protein L13a vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of 60S ribosomal protein L13a vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of 60S ribosomal protein L13a vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of 60S ribosomal protein L13a vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of 60S ribosomal protein L13a vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of 60S ribosomal protein L13a vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of 60S ribosomal protein L13a vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of 60S ribosomal protein L13a vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30019903 ID=SMED30019903|Name=60S ribosomal protein L13a|organism=Schmidtea mediterranea sexual|type=transcript|length=691bpback to top protein sequence of SMED30019903-orf-1 >SMED30019903-orf-1 ID=SMED30019903-orf-1|Name=SMED30019903-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=203bp MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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