60S ribosomal protein L13a

Overview
Name60S ribosomal protein L13a (AFJ24771.1)
Smed IDSMED30019903
Length (bp)691
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 60S ribosomal protein L13a (SMED30019903) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L13a (SMED30019903) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L13a (SMED30019903) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L13a (SMED30019903) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30019903

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 15

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30019903h1SMcG0015608 SmedASXL_008097SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30019903h1SMcG0015608 dd_Smed_v4_287_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30019903h1SMcG0015608 dd_Smed_v4_287_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30019903h1SMcG0015608 dd_Smed_v4_287_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30019903h1SMcG0015608 dd_Smed_v4_287_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30019903h1SMcG0015608 dd_Smed_v4_287_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30019903h1SMcG0015608 dd_Smed_v4_287_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30019903h1SMcG0015608 dd_Smed_v4_287_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30019903h1SMcG0015608 dd_Smed_v4_287_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30019903h1SMcG0015608 dd_Smed_v4_287_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30019903h1SMcG0015608 dd_Smed_v4_287_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30019903h1SMcG0015608 dd_Smed_v4_287_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30019903h1SMcG0015608 Contig22022uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30019903h1SMcG0015608 Contig22022newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
neoblastSMED30019903h1SMcG0015608 dd_Smed_v6_287_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Human
Match: RPL13A (ribosomal protein L13a [Source:HGNC Symbol;Acc:HGNC:10304])

HSP 1 Score: 258.455 bits (659), Expect = 2.138e-87
Identity = 124/196 (63.27%), Postives = 158/196 (80.61%), Query Frame = 3 
Query:   75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            +VLV+D  GHLLGRLA  VAK  L G++VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+  +P+AL+VVRLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+  +L+++A     +K+ KY E+L   G
Sbjct:    5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHG 200
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Human
Match: RPL13A (ribosomal protein L13a [Source:HGNC Symbol;Acc:HGNC:10304])

HSP 1 Score: 250.751 bits (639), Expect = 2.536e-84
Identity = 124/204 (60.78%), Postives = 158/204 (77.45%), Query Frame = 3 
Query:   75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRG--------MIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            +VLV+D  GHLLGRLA  VAK  L G++VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RG        M+PHKTKRG AALD++KVF+G+P PYDK K+  +P+AL+VVRLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+  +L+++A     +K+ KY E+L   G
Sbjct:    4 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGEQSVGTAGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHG 207
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Human
Match: RPL13A (ribosomal protein L13a [Source:HGNC Symbol;Acc:HGNC:10304])

HSP 1 Score: 184.882 bits (468), Expect = 2.492e-59
Identity = 86/139 (61.87%), Postives = 112/139 (80.58%), Query Frame = 3 
Query:  246 MNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            MNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+  +P+AL+VVRLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+  +L+++A     +K+ KY E+L   G
Sbjct:    1 MNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHG 139
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Celegans
Match: rpl-16 (60S ribosomal protein L13a [Source:UniProtKB/Swiss-Prot;Acc:Q27389])

HSP 1 Score: 216.083 bits (549), Expect = 4.366e-71
Identity = 106/202 (52.48%), Postives = 144/202 (71.29%), Query Frame = 3 
Query:   60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665
            M +S + ++ID   HLLGRLA+ VAK  LQG +VV++R E++ ISG+F+R+KLKY  FL+KR N NP+RG FH R+P KI WRT+RGM+PHKT RG  AL  ++ +EGVPA Y K K    PSA R  RL+P RKFC +GRLSHEVGW++Q VV+ LE KRK K A ++ ++K+  KL  +A    + K+A+Y +I+   G+
Sbjct:    1 MGLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGY 201
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Celegans
Match: rpl-16 (60S ribosomal protein L13a [Source:UniProtKB/Swiss-Prot;Acc:Q27389])

HSP 1 Score: 216.083 bits (549), Expect = 4.366e-71
Identity = 106/202 (52.48%), Postives = 144/202 (71.29%), Query Frame = 3 
Query:   60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665
            M +S + ++ID   HLLGRLA+ VAK  LQG +VV++R E++ ISG+F+R+KLKY  FL+KR N NP+RG FH R+P KI WRT+RGM+PHKT RG  AL  ++ +EGVPA Y K K    PSA R  RL+P RKFC +GRLSHEVGW++Q VV+ LE KRK K A ++ ++K+  KL  +A    + K+A+Y +I+   G+
Sbjct:    1 MGLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGY 201
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Fly
Match: RpL13A (gene:FBgn0037351 transcript:FBtr0078705)

HSP 1 Score: 222.246 bits (565), Expect = 1.839e-73
Identity = 104/201 (51.74%), Postives = 150/201 (74.63%), Query Frame = 3 
Query:   63 SVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665
             ++ + +VID  GHLLGRLA+ VAK  LQG +V +VR E++N+SG FYRNK+K+  +L+KR N NP+RGPFH R+PS+I ++ +RGMIPHKTKRG AAL +++VF+G+P+PYDK ++  +P A+RV+ L+ +RK+CQ+GRLSHEVGW YQ V+ +LE KRKAK  +     +E KKL  KA    ++    +N+I+  +G+
Sbjct:    3 GLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Fly
Match: RpL13A (gene:FBgn0037351 transcript:FBtr0335214)

HSP 1 Score: 110.923 bits (276), Expect = 3.596e-31
Identity = 47/86 (54.65%), Postives = 67/86 (77.91%), Query Frame = 3 
Query:   63 SVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRG 320
             ++ + +VID  GHLLGRLA+ VAK  LQG +V +VR E++N+SG FYRNK+K+  +L+KR N NP+RGPFH R+PS+I ++ +RG
Sbjct:    3 GLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRG 88
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Zebrafish
Match: rpl13a (ribosomal protein L13a [Source:ZFIN;Acc:ZDB-GENE-030131-168])

HSP 1 Score: 260.381 bits (664), Expect = 3.012e-88
Identity = 124/197 (62.94%), Postives = 157/197 (79.70%), Query Frame = 3 
Query:   72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
             KVL+ID  GHLLGRL+  VAK  L G ++V+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+  +P+AL++VRLKP RKF  LGRL+HEVGWKYQ++ +TLEEKRK KA L YSK+K   KL ++A      K+A Y ++L K+G
Sbjct:    6 NKVLIIDGRGHLLGRLSAIVAKQVLLGHKIVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKLRYSKKKVEMKLTKQAEKNVESKIAVYTDVLKKYG 202
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Zebrafish
Match: rpl13a (ribosomal protein L13a [Source:ZFIN;Acc:ZDB-GENE-030131-168])

HSP 1 Score: 260.381 bits (664), Expect = 3.012e-88
Identity = 124/197 (62.94%), Postives = 157/197 (79.70%), Query Frame = 3 
Query:   72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
             KVL+ID  GHLLGRL+  VAK  L G ++V+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+  +P+AL++VRLKP RKF  LGRL+HEVGWKYQ++ +TLEEKRK KA L YSK+K   KL ++A      K+A Y ++L K+G
Sbjct:    6 NKVLIIDGRGHLLGRLSAIVAKQVLLGHKIVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKLRYSKKKVEMKLTKQAEKNVESKIAVYTDVLKKYG 202
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Xenopus
Match: dtnbp1 (dystrobrevin binding protein 1 [Source:Xenbase;Acc:XB-GENE-5812147])

HSP 1 Score: 233.417 bits (594), Expect = 8.219e-78
Identity = 110/178 (61.80%), Postives = 146/178 (82.02%), Query Frame = 3 
Query:  129 VAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            VAK  L G++VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KVF+G+P PYDK K+  +P+AL++VRLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y+K+K   KL+++A      K++KY ++L ++G
Sbjct:    2 VAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKRKRMVVPAALKIVRLKPTRKFAFLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYNKKKIIVKLRKQAEKNVESKISKYTDVLKQYG 179
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Mouse
Match: Rpl13a (ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455])

HSP 1 Score: 251.906 bits (642), Expect = 6.480e-85
Identity = 121/196 (61.73%), Postives = 157/196 (80.10%), Query Frame = 3 
Query:   75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            +VLV+D  GHLLGRLA  VAK  L G++VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+  +P+AL+VVRLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+  +L+++A     +K+ K+ E+L   G
Sbjct:    5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVLKTNG 200
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Mouse
Match: Gm45713 (predicted gene 45713 [Source:MGI Symbol;Acc:MGI:5804828])

HSP 1 Score: 248.44 bits (633), Expect = 1.958e-80
Identity = 121/195 (62.05%), Postives = 156/195 (80.00%), Query Frame = 3 
Query:   78 VLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            VLV+D  GHLLGRLA  VAK  L G++VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+  +P+AL+VVRLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+  +L+++A     +K+ K+ E+L   G
Sbjct:  249 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVLKTNG 443
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Mouse
Match: Rpl13a (ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455])

HSP 1 Score: 229.565 bits (584), Expect = 1.107e-76
Identity = 108/167 (64.67%), Postives = 133/167 (79.64%), Query Frame = 3 
Query:   75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIR-----------GMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKR 542
            +VLV+D  GHLLGRLA  VAK  L G++VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+R           GM+PHKTKRG AAL+++KV +G+P PYDK K+  +P+AL+VVRLKP RKF  LGRL+HEVGWKYQ+V +TLEEKR
Sbjct:    1 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRAPLMRPAVTPTGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 167
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Mouse
Match: Rpl13a (ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455])

HSP 1 Score: 206.068 bits (523), Expect = 3.122e-67
Identity = 107/196 (54.59%), Postives = 140/196 (71.43%), Query Frame = 3 
Query:   75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            +VLV+D  GHLLGRLA  VAK      +V+LV                KY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+  +P+AL+VVRLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+  +L+++A     +K+ K+ E+L   G
Sbjct:    1 QVLVLDGRGHLLGRLAAIVAK------QVLLV----------------KYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVLKTNG 174
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Mouse
Match: Rpl13a (ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455])

HSP 1 Score: 195.282 bits (495), Expect = 1.968e-63
Identity = 89/132 (67.42%), Postives = 111/132 (84.09%), Query Frame = 3 
Query:   75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFC 470
            +VLV+D  GHLLGRLA  VAK  L G++VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KV +G+P PYDK K+  +P+AL+VVRLKP RK C
Sbjct:    5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKPC 136
[Close]
BLAST of 60S ribosomal protein L13a vs. UniProt/SwissProt
Match: sp|P40429|RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens OX=9606 GN=RPL13A PE=1 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 1.027e-86
Identity = 124/196 (63.27%), Postives = 158/196 (80.61%), Query Frame = 3 
Query:   75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            +VLV+D  GHLLGRLA  VAK  L G++VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+  +P+AL+VVRLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+  +L+++A     +K+ KY E+L   G
Sbjct:    5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHG 200
[Close]
BLAST of 60S ribosomal protein L13a vs. UniProt/SwissProt
Match: sp|Q4R8Z2|RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis OX=9541 GN=RPL13A PE=2 SV=3)

HSP 1 Score: 257.684 bits (657), Expect = 2.231e-86
Identity = 123/196 (62.76%), Postives = 158/196 (80.61%), Query Frame = 3 
Query:   75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            +VLV+D  GHLLGRLA  VAK  L G++VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+  +P+AL+VVRLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+  +L+++A     +K+ KY ++L   G
Sbjct:    5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVLKTHG 200
[Close]
BLAST of 60S ribosomal protein L13a vs. UniProt/SwissProt
Match: sp|P93099|RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa OX=2762 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 3.410e-86
Identity = 117/165 (70.91%), Postives = 139/165 (84.24%), Query Frame = 3 
Query:   72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWY 566
            EKV+V+DC GHLLGRLA  +AK  L GQRVV VRTE++NISGS +RNKLK+  FLKKRMNTNP RGPFH RSP++I+WRTIRGMIPHKT RGAAAL+++K FEGVP PYDKMK+  IP ALRV+RLKP RKFC LGRL+ EVGW++  +V+ LEEKRK K+A +Y
Sbjct:    3 EKVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFY 167
[Close]
BLAST of 60S ribosomal protein L13a vs. UniProt/SwissProt
Match: sp|Q5RA38|RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii OX=9601 GN=RPL13A PE=2 SV=3)

HSP 1 Score: 256.144 bits (653), Expect = 7.594e-86
Identity = 123/196 (62.76%), Postives = 158/196 (80.61%), Query Frame = 3 
Query:   75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            +VLV+D  GHLLGRLA  VAK  L G++VV+VR E +NISG+FYRNKLKY  FL+KRMNT+PSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+  +P+AL+VVRLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+  +L+++A     +K+ KY E+L   G
Sbjct:    5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYTEVLKTHG 200
[Close]
BLAST of 60S ribosomal protein L13a vs. UniProt/SwissProt
Match: sp|Q3SZ90|RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus OX=9913 GN=RPL13A PE=2 SV=3)

HSP 1 Score: 255.373 bits (651), Expect = 1.432e-85
Identity = 122/196 (62.24%), Postives = 158/196 (80.61%), Query Frame = 3 
Query:   75 KVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            +VLV+D  GHLLGRLA  VAK  L G++VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KVF+G+P PYDK K+  +P+AL+VVRLKP RKF  LGRL+HEVGWKYQ+V +TLEEKRK KA + Y K+K+  +L+++A     +K+ K+ E+L   G
Sbjct:    5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVLKTHG 200
[Close]
BLAST of 60S ribosomal protein L13a vs. TrEMBL
Match: I1ZIB7 (60S ribosomal protein L13a OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 2.657e-135
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 3 
Query:   60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665
            MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGA ALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSKQKESKKLKEKAVLATSEKVAKYNEILAKFGH
Sbjct:    1 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAGALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSKQKESKKLKEKAVLATSEKVAKYNEILAKFGH 202
[Close]
BLAST of 60S ribosomal protein L13a vs. TrEMBL
Match: A0A1D1VBK2 (Uncharacterized protein OS=Ramazzottius varieornatus OX=947166 GN=RvY_09439-1 PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 2.392e-90
Identity = 130/202 (64.36%), Postives = 159/202 (78.71%), Query Frame = 3 
Query:   60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665
            M  + K LV+D  GHLLGRLA  VAK  L GQ VV+VR E +NISGSFYRNKLKY +FL+KRMNTNP RGPFH R+PSKI WRT+RGM+PHKT RG AALDK+KVFEG+PAPYDKMK+   P+ALR +RL P RKFC++GRLS EVGWKYQ V++TLE KRKAKA ++Y+ +K  +KL  +A    + +VAKY +I+  +GH
Sbjct:    1 MGFTNKPLVLDGRGHLLGRLAALVAKTLLHGQHVVVVRCEGINISGSFYRNKLKYLDFLRKRMNTNPRRGPFHFRAPSKIFWRTVRGMLPHKTARGQAALDKLKVFEGIPAPYDKMKRQVAPAALRSIRLNPRRKFCEVGRLSAEVGWKYQDVITTLEAKRKAKAGVFYTAKKTEQKLLTQARKTVAPRVAKYQKIIESYGH 202
[Close]
BLAST of 60S ribosomal protein L13a vs. TrEMBL
Match: A0A2B4T1K0 (60S ribosomal protein L13a OS=Stylophora pistillata OX=50429 GN=RPL13A PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.785e-88
Identity = 128/198 (64.65%), Postives = 165/198 (83.33%), Query Frame = 3 
Query:   72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665
            EK +VID +GHLLGRLA+ +AK+ L GQR+V+VR E VNISGSF+RNKLKY +FL+KR NT PSRGPFH R+PS+IVWRT+RGMIPHK KRG  A++++KVF+GVP P+DK K+  +PSALRVVRLKP RK+C LGRLSHEVGWKY+ V+ TLEEKRKAKAA++Y  +K+ +KLK+KA+   +E++   NE+L  +G+
Sbjct:    4 EKPIVIDASGHLLGRLASTIAKSLLTGQRIVVVRCEQVNISGSFFRNKLKYLDFLRKRTNTKPSRGPFHFRAPSRIVWRTVRGMIPHKNKRGTEAMNRLKVFDGVPPPHDKEKRMVVPSALRVVRLKPGRKYCVLGRLSHEVGWKYKDVLETLEEKRKAKAAVYYEHKKKVEKLKQKALQNKAEELKSVNEVLENYGY 201
[Close]
BLAST of 60S ribosomal protein L13a vs. TrEMBL
Match: A0A183WCW8 (Uncharacterized protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS9969 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 7.759e-87
Identity = 124/202 (61.39%), Postives = 159/202 (78.71%), Query Frame = 3 
Query:   60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665
            M +S + ++ID  GHLLGRLA  VAK  LQGQ+VV+VR E++NISGSFYRNKLKY +FLKKRMNTNPSRGP+H R+P+KI WRT+RGM+PHK  RG  ALD++KVFEG+P PYDK K+  +PSALRV+RLKP RKFC L RLS++VGWKY++++  +E +RKAKAA+WY +QK  KK  E A     + +A Y  IL ++G+
Sbjct:    1 MDLSSQAIIIDAQGHLLGRLAAVVAKTLLQGQKVVVVRCENINISGSFYRNKLKYLDFLKKRMNTNPSRGPYHFRAPAKIFWRTVRGMLPHKLHRGKLALDRLKVFEGIPPPYDKKKRMVVPSALRVIRLKPGRKFCVLSRLSNDVGWKYKNIIEKMENRRKAKAAVWYKRQKLMKKPTEAARGRAKKAIAPYQAILKQYGY 202
[Close]
BLAST of 60S ribosomal protein L13a vs. TrEMBL
Match: W4XS18 (Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 1.269e-86
Identity = 127/201 (63.18%), Postives = 159/201 (79.10%), Query Frame = 3 
Query:   60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            MS   KVLVID  GHLLGRLA+ VAK  LQGQ+VV+VR E +NISGSFYRNKLKY +F++KR NT PSRGP+HLRSPS++ WR IRGM+PHK  RG  AL+++KVFEG PAPYD+ K+  +PSALRV+RLKPNRKFC LGRL+HEVGWKY++++  LEEKRKA+A L Y K+     L+ KAV +  +K+A Y +I+  +G
Sbjct:    1 MSSFAKVLVIDGRGHLLGRLASIVAKNLLQGQKVVVVRCELINISGSFYRNKLKYMQFMRKRTNTKPSRGPYHLRSPSRMFWRVIRGMLPHKRTRGKDALERLKVFEGCPAPYDRKKRFVVPSALRVMRLKPNRKFCVLGRLAHEVGWKYKNIIEALEEKRKARAHLHYQKELRKSALRRKAVKSVGDKIAPYQKIIEAYG 201
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Cavefish
Match: rpl13a (ribosomal protein L13a [Source:NCBI gene;Acc:103025160])

HSP 1 Score: 254.603 bits (649), Expect = 4.450e-86
Identity = 122/197 (61.93%), Postives = 155/197 (78.68%), Query Frame = 3 
Query:   72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
             KVLVID  GHLLGRLA  VAK  L G +VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KVF+G+P PYDK K+  +P+AL++VRLKP RKF  L RL+HEVGWKYQ++ +TLEE+RK KA + Y+K+K   KL ++A      K+ KY  IL ++G
Sbjct:    6 HKVLVIDGRGHLLGRLAAIVAKQVLLGHKVVIVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKRKRMVVPAALKIVRLKPTRKFALLDRLAHEVGWKYQAITATLEERRKEKAKIRYTKKKAQIKLTKQAEKNVEGKINKYTNILKQYG 202
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Sea Lamprey
Match: rpl13a (ribosomal protein L13a [Source:ZFIN;Acc:ZDB-GENE-030131-168])

HSP 1 Score: 258.84 bits (660), Expect = 1.615e-88
Identity = 125/197 (63.45%), Postives = 158/197 (80.20%), Query Frame = 3 
Query:   72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
            +KVL+ID  GHLLGRL+  VAK  L G +VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AALD++KVF+G+P PYDK K+  +P+AL+VVRLKP RKF  LGRLSHEVGWKYQ+V +TLEEKRK KA L Y K+K++  L++KA     +K+  Y  +L ++G
Sbjct:    6 QKVLLIDGRGHLLGRLSAIVAKQILIGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMVPHKTKRGQAALDRLKVFDGIPPPYDKRKRMVVPAALKVVRLKPTRKFAVLGRLSHEVGWKYQAVTATLEEKRKQKAKLHYEKKKKTVTLRKKAEKNVEKKICAYTAVLKQYG 202
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Yeast
Match: RPL16B (Ribosomal 60S subunit protein L16B; N-terminally acetylated, binds 5.8 S rRNA; transcriptionally regulated by Rap1p; homologous to mammalian ribosomal protein L13A and bacterial L13; RPL16B has a paralog, RPL16A, that arose from the whole genome duplication [Source:SGD;Acc:S000005013])

HSP 1 Score: 218.779 bits (556), Expect = 5.707e-73
Identity = 96/167 (57.49%), Postives = 131/167 (78.44%), Query Frame = 3 
Query:   66 VSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWY 566
            +S+ V+VID   HLLGRLA+ +AK  L GQ++V+VR E +NISG F+RNKLKY +FL+K    N +RGPFH R+PS+I+++ IRGM+ HKT RG AAL+++K+FEG+P PYDK K+  +P ALRV+RLKP RK+  LG+LS  VGWKY+ VV+ LE+KRK ++A +Y
Sbjct:    1 MSQPVVVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYY 167
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Yeast
Match: RPL16A (Ribosomal 60S subunit protein L16A; N-terminally acetylated, binds 5.8 S rRNA; transcriptionally regulated by Rap1p; homologous to mammalian ribosomal protein L13A and bacterial L13; RPL16A has a paralog, RPL16B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000001395])

HSP 1 Score: 218.394 bits (555), Expect = 7.098e-73
Identity = 100/169 (59.17%), Postives = 131/169 (77.51%), Query Frame = 3 
Query:   60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWY 566
            MSV E V+VID  GHL+GRLA+ VAK  L GQ++V+VR E++NISG F+RNKLKY +FL+K    N +RGPFH R+PS+I ++ +RGM+ HKT RG AAL+++KVFEG+P PYDK K+  +P ALRV+RLKP RK+  LG+LS  VGWKY+ VV+ LE KRK  +A +Y
Sbjct:    1 MSV-EPVVVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYY 168
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Nematostella
Match: EDO38749 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SBZ8])

HSP 1 Score: 259.996 bits (663), Expect = 8.234e-89
Identity = 124/198 (62.63%), Postives = 161/198 (81.31%), Query Frame = 3 
Query:   72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665
            EK +VID AGHLLGRLA+ VAK+ L GQRVV+VR E + ISG+FYRNKLKY +FL+KR NT PS GPFH R+PS+I WRT+RGMIPHKTK+G  A++++KVF+GVP PYDK K+  +PSAL+V+RLKP RKFC LGRLSHEVGWKYQ ++ TLEEKRKAK+ L++  +K+ +KLK+ A L  ++++   N+ LA +G+
Sbjct:    4 EKQIVIDGAGHLLGRLASTVAKSILSGQRVVVVRCEKICISGNFYRNKLKYLDFLRKRTNTKPSHGPFHFRAPSRIFWRTVRGMIPHKTKKGTEAMNRMKVFDGVPPPYDKEKRMVVPSALKVIRLKPGRKFCVLGRLSHEVGWKYQDILETLEEKRKAKSKLYFEHKKKVQKLKQTAELNKADELKSVNKTLAGYGY 201
[Close]
BLAST of 60S ribosomal protein L13a vs. Ensembl Medaka
Match: rpl13a (ribosomal protein L13a [Source:NCBI gene;Acc:101166097])

HSP 1 Score: 259.61 bits (662), Expect = 9.066e-88
Identity = 124/197 (62.94%), Postives = 157/197 (79.70%), Query Frame = 3 
Query:   72 EKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFG 662
             KVL+ID  GHLLGRLA  VAK  L G +VV+VR E +NISG+FYRNKLKY  FL+KRMNTNPSRGP+H R+PS+I WRT+RGM+PHKTKRG AAL+++KVF+G+P PYDK K+  +P+AL++VRLKP+RKF  LGRL+HEVGWKYQ++ +TLEEKRK KA L Y K+K   KL + A      K+AKY ++L ++G
Sbjct:   29 NKVLLIDGRGHLLGRLAAIVAKQVLLGHKVVIVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKRKRVVVPAALKIVRLKPSRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKLHYVKKKTLVKLSKLAEKNVEGKIAKYTDVLKQYG 225
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BLAST of 60S ribosomal protein L13a vs. Planmine SMEST
Match: SMESG000041483.1 (SMESG000041483.1)

HSP 1 Score: 387.497 bits (994), Expect = 7.389e-139
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 3 
Query:   60 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYXXXXXXXXXXXXAVLATSEKVAKYNEILAKFGH 665
            MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGA ALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSKQKESKKLKEKAVLATSEKVAKYNEILAKFGH
Sbjct:    1 MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYRNKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAGALDKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKYQSVVSTLEEKRKAKAALWYSKQKESKKLKEKAVLATSEKVAKYNEILAKFGH 202
The following BLAST results are available for this feature:
BLAST of 60S ribosomal protein L13a vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
RPL13A2.138e-8763.27ribosomal protein L13a [Source:HGNC Symbol;Acc:HGN... [more]
RPL13A2.536e-8460.78ribosomal protein L13a [Source:HGNC Symbol;Acc:HGN... [more]
RPL13A2.492e-5961.87ribosomal protein L13a [Source:HGNC Symbol;Acc:HGN... [more]
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BLAST of 60S ribosomal protein L13a vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpl-164.366e-7152.4860S ribosomal protein L13a [Source:UniProtKB/Swis... [more]
rpl-164.366e-7152.4860S ribosomal protein L13a [Source:UniProtKB/Swis... [more]
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BLAST of 60S ribosomal protein L13a vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
RpL13A1.839e-7351.74gene:FBgn0037351 transcript:FBtr0078705[more]
RpL13A3.596e-3154.65gene:FBgn0037351 transcript:FBtr0335214[more]
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BLAST of 60S ribosomal protein L13a vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpl13a3.012e-8862.94ribosomal protein L13a [Source:ZFIN;Acc:ZDB-GENE-0... [more]
rpl13a3.012e-8862.94ribosomal protein L13a [Source:ZFIN;Acc:ZDB-GENE-0... [more]
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BLAST of 60S ribosomal protein L13a vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
dtnbp18.219e-7861.80dystrobrevin binding protein 1 [Source:Xenbase;Acc... [more]
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BLAST of 60S ribosomal protein L13a vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rpl13a6.480e-8561.73ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:... [more]
Gm457131.958e-8062.05predicted gene 45713 [Source:MGI Symbol;Acc:MGI:58... [more]
Rpl13a1.107e-7664.67ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:... [more]
Rpl13a3.122e-6754.59ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:... [more]
Rpl13a1.968e-6367.42ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:... [more]
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BLAST of 60S ribosomal protein L13a vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P40429|RL13A_HUMAN1.027e-8663.2760S ribosomal protein L13a OS=Homo sapiens OX=9606... [more]
sp|Q4R8Z2|RL13A_MACFA2.231e-8662.7660S ribosomal protein L13a OS=Macaca fascicularis ... [more]
sp|P93099|RL13A_CYAPA3.410e-8670.9160S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
sp|Q5RA38|RL13A_PONAB7.594e-8662.7660S ribosomal protein L13a OS=Pongo abelii OX=9601... [more]
sp|Q3SZ90|RL13A_BOVIN1.432e-8562.2460S ribosomal protein L13a OS=Bos taurus OX=9913 G... [more]
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BLAST of 60S ribosomal protein L13a vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
I1ZIB72.657e-13599.5060S ribosomal protein L13a OS=Schmidtea mediterran... [more]
A0A1D1VBK22.392e-9064.36Uncharacterized protein OS=Ramazzottius varieornat... [more]
A0A2B4T1K07.785e-8864.6560S ribosomal protein L13a OS=Stylophora pistillat... [more]
A0A183WCW87.759e-8761.39Uncharacterized protein OS=Trichobilharzia regenti... [more]
W4XS181.269e-8663.18Uncharacterized protein OS=Strongylocentrotus purp... [more]
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BLAST of 60S ribosomal protein L13a vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl13a4.450e-8661.93ribosomal protein L13a [Source:NCBI gene;Acc:10302... [more]
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BLAST of 60S ribosomal protein L13a vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl13a1.615e-8863.45ribosomal protein L13a [Source:ZFIN;Acc:ZDB-GENE-0... [more]
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BLAST of 60S ribosomal protein L13a vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
RPL16B5.707e-7357.49Ribosomal 60S subunit protein L16B; N-terminally a... [more]
RPL16A7.098e-7359.17Ribosomal 60S subunit protein L16A; N-terminally a... [more]
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BLAST of 60S ribosomal protein L13a vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO387498.234e-8962.63Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of 60S ribosomal protein L13a vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl13a9.066e-8862.94ribosomal protein L13a [Source:NCBI gene;Acc:10116... [more]
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BLAST of 60S ribosomal protein L13a vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000041483.17.389e-13999.50SMESG000041483.1[more]
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Cross References
External references for this transcript
DatabaseAccession
SmedGD GBrowseSMED30019903
GenBankAFJ24771.1
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30019903 ID=SMED30019903|Name=60S ribosomal protein L13a|organism=Schmidtea mediterranea sexual|type=transcript|length=691bp
ATTATTGTCAGAAAATCTTTGTTTAAATCTTTCGTAATTATATAAAACTT
AAAATTTAAATGTCTGTTAGTGAAAAGGTTTTAGTTATAGATTGTGCTGG
CCATCTTTTAGGTAGATTAGCCACAGCAGTAGCAAAGGCTTCTTTACAAG
GTCAAAGAGTTGTTCTCGTCAGAACTGAAGATGTTAATATTTCTGGTTCA
TTTTATAGAAATAAACTTAAATACCAAGAATTTTTGAAAAAGCGTATGAA
TACTAACCCTTCAAGAGGACCTTTCCATTTAAGATCTCCGTCAAAAATTG
TTTGGAGAACTATTAGAGGAATGATTCCACATAAAACAAAGAGAGGGGCT
GCTGCTTTGGATAAAATCAAAGTTTTTGAAGGTGTCCCAGCTCCTTATGA
CAAAATGAAAAAGTCGTGTATTCCATCAGCACTTAGAGTTGTTAGACTAA
AACCAAACAGAAAATTCTGTCAATTGGGCCGTCTTTCTCACGAAGTTGGC
TGGAAATATCAATCTGTAGTTTCAACCCTCGAAGAAAAACGTAAAGCTAA
AGCTGCTTTATGGTATTCAAAGCAGAAAGAATCAAAGAAACTAAAAGAAA
AAGCAGTCCTCGCTACTAGTGAAAAAGTTGCAAAATATAATGAAATTTTG
GCTAAATTCGGTCATTAAATTTGCTAAATAAAAATTTTGGA
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protein sequence of SMED30019903-orf-1

>SMED30019903-orf-1 ID=SMED30019903-orf-1|Name=SMED30019903-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=203bp
MSVSEKVLVIDCAGHLLGRLATAVAKASLQGQRVVLVRTEDVNISGSFYR
NKLKYQEFLKKRMNTNPSRGPFHLRSPSKIVWRTIRGMIPHKTKRGAAAL
DKIKVFEGVPAPYDKMKKSCIPSALRVVRLKPNRKFCQLGRLSHEVGWKY
QSVVSTLEEKRKAKAALWYSKQKESKKLKEKAVLATSEKVAKYNEILAKF
GH*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR005755Ribosomal_L13_euk/arc
IPR036899Ribosomal_L13_sf
IPR005822Ribosomal_L13
IPR023563Ribosomal_L13_CS
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
GO:0015934large ribosomal subunit
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: biological process
TermDefinition
GO:0006412translation
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 10..117
e-value: 1.1E-6
score: 28.9
IPR005822Ribosomal protein L13PIRSFPIRSF002181RPL13p_RPL13Aa_RPL16e_RPL13ocoord: 157..193
e-value: 990.0
score: -3.2
coord: 2..153
e-value: 1.4E-39
score: 133.1
IPR005822Ribosomal protein L13PANTHERPTHR11545RIBOSOMAL PROTEIN L13coord: 6..201
IPR005822Ribosomal protein L13CDDcd00392Ribosomal_L13coord: 9..109
e-value: 2.28775E-37
score: 123.769
IPR005755Ribosomal protein L13, eukaryotic/archaealTIGRFAMTIGR01077TIGR01077coord: 9..150
e-value: 6.1E-54
score: 180.2
IPR005755Ribosomal protein L13, eukaryotic/archaealPANTHERPTHR11545:SF3RIBOSOMAL PROTEIN L13Acoord: 6..201
IPR036899Ribosomal protein L13 superfamilyGENE3DG3DSA:3.90.1180.10coord: 2..150
e-value: 2.1E-67
score: 227.6
IPR036899Ribosomal protein L13 superfamilySUPERFAMILYSSF52161Ribosomal protein L13coord: 8..150
IPR023563Ribosomal protein L13, conserved sitePROSITEPS00783RIBOSOMAL_L13coord: 85..108