SMED30019887

Overview


Name	SMED30019887
Smed ID	SMED30019887
Length (bp)	1213

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30019887 (SMED30019887) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30019887 (SMED30019887) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30019887 (SMED30019887) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30019887 (SMED30019887) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30019887

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30019887	SMESG000011341.1	dd_Smed_v4_2941_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30019887	SMESG000011341.1	dd_Smed_v4_2941_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30019887	SMESG000076695.1	Contig4339	GPL15192	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30019887	SMESG000011341.1	Contig4339	GPL15192	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30019887 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.004209:33760..42633 +	5804

Homology

[Close]

BLAST of SMED30019887 vs. Ensembl Human
Match: TPM3 (tropomyosin 3 [Source:HGNC Symbol;Acc:HGNC:12012])

HSP 1 Score: 89.3521 bits (220), Expect = 1.632e-19
Identity = 72/193 (37.31%), Postives = 118/193 (61.14%), Query Frame = 1

Query:  220 NLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L   E R+  AE++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   88 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELD--HA 278

[Close]

BLAST of SMED30019887 vs. Ensembl Human
Match: TPM1 (tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010])

HSP 1 Score: 87.8113 bits (216), Expect = 5.511e-19
Identity = 78/238 (32.77%), Postives = 143/238 (60.08%), Query Frame = 1

Query:   97 IKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+E+R   D ++M+    QL+EA     IA D A+RK EE+++KL+  E  L  AE R+  +E +  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ L+ ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   46 LQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA---KHIAED-ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD--HA 277

[Close]

BLAST of SMED30019887 vs. Ensembl Human
Match: TPM1 (tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010])

HSP 1 Score: 87.0409 bits (214), Expect = 5.693e-19
Identity = 75/245 (30.61%), Postives = 143/245 (58.37%), Query Frame = 1

Query:   76 GPPAALVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            G  +   ++ ++++L  + +  ++   +  + +D E++     + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+E+R   D ++M+    QL+EA  ++    ++A+RK EE+++KL+  E  L  AE R+  +E +  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ L+ ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:    3 GSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA----EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD--HA 241

[Close]

BLAST of SMED30019887 vs. Ensembl Human
Match: TPM1 (tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010])

HSP 1 Score: 87.8113 bits (216), Expect = 5.841e-19
Identity = 78/238 (32.77%), Postives = 143/238 (60.08%), Query Frame = 1

Query:   97 IKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+E+R   D ++M+    QL+EA     IA D A+RK EE+++KL+  E  L  AE R+  +E +  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ L+ ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   46 LQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA---KHIAED-ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD--HA 277

[Close]

BLAST of SMED30019887 vs. Ensembl Human
Match: TPM1 (tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010])

HSP 1 Score: 87.0409 bits (214), Expect = 6.656e-19
Identity = 75/245 (30.61%), Postives = 143/245 (58.37%), Query Frame = 1

Query:   76 GPPAALVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            G  +   ++ ++++L  + +  ++   +  + +D E++     + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+E+R   D ++M+    QL+EA  ++    ++A+RK EE+++KL+  E  L  AE R+  +E +  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ L+ ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:    3 GSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA----EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD--HA 241

[Close]

BLAST of SMED30019887 vs. Ensembl Celegans
Match: lev-11 (Tropomyosin isoforms a/b/d/f [Source:UniProtKB/Swiss-Prot;Acc:Q22866])

HSP 1 Score: 108.612 bits (270), Expect = 4.669e-27
Identity = 74/207 (35.75%), Postives = 130/207 (62.80%), Query Frame = 1

Query:  181 EKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            E++K  + + E   L +++ +++++    E +LK  +  LE  +K+A +++R RK ME R   D +R + LE  +  + +  ++A+RK EE+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA++RE +Y+ +IR ++ ++KEAE RA  AE  V+K + E+D++++E+  EK  Y  I +ELD    E
Sbjct:   46 ERKKREDAEAEVAALNRRIVLVEEDLERTEDRLKTATSKLEQATKAADEADRARKSMETRSQQDEERANFLETQVDEAKVIAEDADRKYEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEELDSTFQE 252

[Close]

BLAST of SMED30019887 vs. Ensembl Celegans
Match: lev-11 (Tropomyosin isoforms a/b/d/f [Source:UniProtKB/Swiss-Prot;Acc:Q22866])

HSP 1 Score: 105.145 bits (261), Expect = 2.332e-26
Identity = 69/171 (40.35%), Postives = 112/171 (65.50%), Query Frame = 1

Query:  289 SQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            ++ LE  + +  +SER RKVMENR   D +R + +E  +K + +  +EA+RK +E+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA++RE +Y+ +IR ++ ++KEAE RA  AE  V+K + E+D++++E+  EK  Y  I +ELD    E
Sbjct:   19 TEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEELDSTFQE 189

[Close]

Query:  289 SQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            ++ LE  + +  +SER RKVMENR   D +R + +E  +K + +  +EA+RK +E+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA++RE +Y+ +IR ++ ++KEAE RA  AE  V+K + E+D++++E+  EK  Y  I +ELD    E
Sbjct:   19 TEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEELDSTFQE 189

[Close]

BLAST of SMED30019887 vs. Ensembl Celegans
Match: lev-11 (Tropomyosin isoforms a/b/d/f [Source:UniProtKB/Swiss-Prot;Acc:Q22866])

HSP 1 Score: 105.531 bits (262), Expect = 6.781e-26
Identity = 75/211 (35.55%), Postives = 130/211 (61.61%), Query Frame = 1

Query:  181 EKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYFSV 813
            E++K  + + E   L +++ +++++    E +LK  +  LE  +K+A +++R RK ME R   D +R + LE  +  + +  ++A+RK EE+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA++RE +Y+ +IR ++ ++KEAE RA  AE  V+K + E+D+++E  D E      ++ ELD M  E  SV
Sbjct:   46 ERKKREDAEAEVAALNRRIVLVEEDLERTEDRLKTATSKLEQATKAADEADRARKSMETRSQQDEERANFLETQVDEAKVIAEDADRKYEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQELNSV 256

[Close]

BLAST of SMED30019887 vs. Ensembl Celegans
Match: lev-11 (Tropomyosin isoforms a/b/d/f [Source:UniProtKB/Swiss-Prot;Acc:Q22866])

HSP 1 Score: 105.145 bits (261), Expect = 1.761e-25
Identity = 69/172 (40.12%), Postives = 112/172 (65.12%), Query Frame = 1

Query:  286 VSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
             ++ LE  + +  +SER RKVMENR   D +R + +E  +K + +  +EA+RK +E+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA++RE +Y+ +IR ++ ++KEAE RA  AE  V+K + E+D++++E+  EK  Y  I +ELD    E
Sbjct:  109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEELDSTFQE 280

[Close]

BLAST of SMED30019887 vs. Ensembl Fly
Match: Tm1 (gene:FBgn0003721 transcript:FBtr0333917)

HSP 1 Score: 101.293 bits (251), Expect = 2.608e-24
Identity = 84/243 (34.57%), Postives = 144/243 (59.26%), Query Frame = 1

Query:   64 MTQNGPPAAL--VIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELD 786
            MT + P   L  V+K +M+    E+EK +DE     K + +E  +  E + E   L +++ +++++    E +L   +  L   S++A +SER RK +ENR N + D++  LE  +  + +  +EA++K EE+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA +RE  Y  +I+ L  ++KEAE RA  AE  V+K + E+D++++E+ + K  Y  I +EL+
Sbjct:    1 MTTSIPQGTLLDVLKKKMRQTKEEMEKYKDECEEFHKRLQLEVVRREEAESEVAALNRRIQLLEEDLERSEERLGSATAKLSEASQAADESERIRKALENRTNMEDDKVALLENQLAQAKLIAEEADKKYEEVARKLAMVEADLERAEERAEQGENKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLNTRLKEAEARAEFAERSVQKLQKEVDRLEDEVSKGKEKYKTIAQELE 243

[Close]

BLAST of SMED30019887 vs. Ensembl Fly
Match: Tm1 (gene:FBgn0003721 transcript:FBtr0305656)

HSP 1 Score: 97.8265 bits (242), Expect = 4.197e-23
Identity = 81/243 (33.33%), Postives = 145/243 (59.67%), Query Frame = 1

Query:   64 MTQNGPPAAL--VIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELD 786
            MT + P   L  V+K +M+    E+EK +DE     K + +E  +  E + E   L +++ +++++    E +L   +  L   S++A +SER RK +ENR N + D++  LE  +  + +  +EA++K EE+++KL+  E  L  +E +   +E++I ELE +L+ V + LKSLE+ ++KA +RE  Y  +I+ L  ++KEAE RA  AE  V+K + E+D++++E+ + K  Y  I +EL+
Sbjct:    1 MTTSIPQGTLLDVLKKKMRQTKEEMEKYKDECEEFHKRLQLEVVRREEAESEVAALNRRIQLLEEDLERSEERLGSATAKLSEASQAADESERIRKALENRTNMEDDKVALLENQLAQAKLIAEEADKKYEEVARKLVLMEQDLERSEEKVELSESKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLNTRLKEAEARAEFAERSVQKLQKEVDRLEDEVSKGKEKYKTIAQELE 243

[Close]

BLAST of SMED30019887 vs. Ensembl Fly
Match: Tm2 (gene:FBgn0004117 transcript:FBtr0083080)

HSP 1 Score: 93.9745 bits (232), Expect = 1.739e-21
Identity = 63/167 (37.72%), Postives = 107/167 (64.07%), Query Frame = 1

Query:  310 SKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYFS 810
            ++SA ++ R  KV+ENR   D +RMDQL   +K + +  ++A+ KS+E+S+KL   E  L  AE+R    E++I ELE +LK V + LKSLE+ ++KA +R   +  +++ L++++KEAE+RA  AE  V++ + E+D++++ +  EK  Y  I  +LD+  AE   
Sbjct:  117 TQSADENNRMCKVLENRSQQDEERMDQLTNQLKEARMLAEDADTKSDEVSRKLAFVEDELEVAEDRVRSGESKIMELEEELKVVGNSLKSLEVSEEKANQRVEEFKREMKTLSIKLKEAEQRAEHAEKQVKRLQKEVDRLEDRLFNEKEKYKAICDDLDQTFAELTG 283

[Close]

BLAST of SMED30019887 vs. Ensembl Fly
Match: Tm1 (gene:FBgn0003721 transcript:FBtr0305654)

HSP 1 Score: 93.5893 bits (231), Expect = 2.397e-21
Identity = 82/239 (34.31%), Postives = 147/239 (61.51%), Query Frame = 1

Query:   97 IKARMKTLNNEIEKLQDEI-LSRDKLIDIEKE-KNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYF 807
            ++ +++T+ NE+++ Q+ + L   KL +  K  +N+E ++ +  L +++ +++++    E +L   +  L   S++A +SER RK++ENR  AD +RMD LE  +K +    +EA++K +E+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA +RE  Y  +I+ L  ++KEAE RA  AE  V+K + E+D++++++  EK  Y  I  +LD    E  
Sbjct:   46 LQKKIQTVENELDQTQEALTLVTGKLEEKNKALQNAESEVAA--LNRRIQLLEEDLERSEERLGSATAKLSEASQAADESERARKILENRALADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLERAEERAEQGENKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLNTRLKEAEARAEFAERSVQKLQKEVDRLEDDLVLEKERYKDIGDDLDTAFVELI 282

[Close]

BLAST of SMED30019887 vs. Ensembl Fly
Match: Tm1 (gene:FBgn0003721 transcript:FBtr0089964)

HSP 1 Score: 93.5893 bits (231), Expect = 2.397e-21
Identity = 82/239 (34.31%), Postives = 147/239 (61.51%), Query Frame = 1

Query:   97 IKARMKTLNNEIEKLQDEI-LSRDKLIDIEKE-KNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYF 807
            ++ +++T+ NE+++ Q+ + L   KL +  K  +N+E ++ +  L +++ +++++    E +L   +  L   S++A +SER RK++ENR  AD +RMD LE  +K +    +EA++K +E+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA +RE  Y  +I+ L  ++KEAE RA  AE  V+K + E+D++++++  EK  Y  I  +LD    E  
Sbjct:   46 LQKKIQTVENELDQTQEALTLVTGKLEEKNKALQNAESEVAA--LNRRIQLLEEDLERSEERLGSATAKLSEASQAADESERARKILENRALADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLERAEERAEQGENKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLNTRLKEAEARAEFAERSVQKLQKEVDRLEDDLVLEKERYKDIGDDLDTAFVELI 282

[Close]

BLAST of SMED30019887 vs. Ensembl Zebrafish
Match: tpm3 (tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16])

HSP 1 Score: 93.2041 bits (230), Expect = 5.059e-21
Identity = 78/234 (33.33%), Postives = 141/234 (60.26%), Query Frame = 1

Query:   97 IKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            ++ ++K   +E++K  + +    + ++I ++K ++ + E  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L   E R+  AE++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   46 MQKKLKGTEDELDKYSEALKDAQEKLEISEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIVEGELERTEERAELAESKCAELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELD--HA 277

[Close]

BLAST of SMED30019887 vs. Ensembl Zebrafish
Match: tpm1 (tropomyosin 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-040426-854])

HSP 1 Score: 91.2781 bits (225), Expect = 2.258e-20
Identity = 78/240 (32.50%), Postives = 144/240 (60.00%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            L ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+    QL+EA  ++    +EA+RK EE+++KL+  E  L   E R+   E++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   44 LALQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMEIQEIQLKEAKHIA----EEADRKYEEVARKLVIVEGELERTEERAELNESKCSELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYSQKLKYKAISEELD--HA 277

[Close]

BLAST of SMED30019887 vs. Ensembl Zebrafish
Match: tpm1 (tropomyosin 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-040426-854])

HSP 1 Score: 90.8929 bits (224), Expect = 2.718e-20
Identity = 78/240 (32.50%), Postives = 144/240 (60.00%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            L ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+    QL+EA  ++    +EA+RK EE+++KL+  E  L   E R+   E++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   44 LALQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMEIQEIQLKEAKHIA----EEADRKYEEVARKLVIVEGELERTEERAELNESKCSELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYSQKLKYKAISEELD--HA 277

[Close]

BLAST of SMED30019887 vs. Ensembl Zebrafish
Match: tpm1 (tropomyosin 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-040426-854])

HSP 1 Score: 88.1965 bits (217), Expect = 1.285e-19
Identity = 73/197 (37.06%), Postives = 120/197 (60.91%), Query Frame = 1

Query:  220 NLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+    QL+EA  ++    +EA+RK EE+++KL+  E  L   E R+   E++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   50 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMEIQEIQLKEAKHIA----EEADRKYEEVARKLVIVEGELERTEERAELNESKCSELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYSQKLKYKAISEELD--HA 240

[Close]

BLAST of SMED30019887 vs. Ensembl Zebrafish
Match: tpm1 (tropomyosin 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-040426-854])

HSP 1 Score: 88.1965 bits (217), Expect = 1.517e-19
Identity = 73/197 (37.06%), Postives = 120/197 (60.91%), Query Frame = 1

Query:  220 NLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+    QL+EA  ++    +EA+RK EE+++KL+  E  L   E R+   E++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   50 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMEIQEIQLKEAKHIA----EEADRKYEEVARKLVIVEGELERTEERAELNESKCSELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYSQKLKYKAISEELD--HA 240

[Close]

BLAST of SMED30019887 vs. Ensembl Xenopus
Match: tpm1 (tropomyosin 1 [Source:NCBI gene;Acc:448541])

HSP 1 Score: 91.6633 bits (226), Expect = 2.177e-20
Identity = 76/236 (32.20%), Postives = 143/236 (60.59%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            + ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L  AE R+  +E++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   44 VALQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERTVAKLEKTIDDLEDELYAQKLKYKAISEELD--HA 277

[Close]

BLAST of SMED30019887 vs. Ensembl Xenopus
Match: tpm1 (tropomyosin 1 [Source:NCBI gene;Acc:448541])

HSP 1 Score: 92.0485 bits (227), Expect = 2.252e-20
Identity = 76/236 (32.20%), Postives = 143/236 (60.59%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            + ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L  AE R+  +E++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   56 VALQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERTVAKLEKTIDDLEDELYAQKLKYKAISEELD--HA 289

[Close]

BLAST of SMED30019887 vs. Ensembl Xenopus
Match: tpm1 (tropomyosin 1 [Source:NCBI gene;Acc:448541])

HSP 1 Score: 85.5001 bits (210), Expect = 6.121e-18
Identity = 71/233 (30.47%), Postives = 140/233 (60.09%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDK 789
            + ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L  AE R+  +E++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D ++E++   K    ++ + LD+
Sbjct:   93 VALQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERTVAKLEKTIDDLEEKVTHAKEENLNMHQMLDQ 325

[Close]

BLAST of SMED30019887 vs. Ensembl Xenopus
Match: tpm1 (tropomyosin 1 [Source:NCBI gene;Acc:448541])

HSP 1 Score: 82.4185 bits (202), Expect = 4.255e-17
Identity = 67/211 (31.75%), Postives = 128/211 (60.66%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELD 723
            + ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L  AE R+  +E++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D
Sbjct:   44 VALQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERTVAKLEKTID 254

[Close]

BLAST of SMED30019887 vs. Ensembl Xenopus
Match: tpm1 (tropomyosin 1 [Source:NCBI gene;Acc:448541])

HSP 1 Score: 81.6481 bits (200), Expect = 1.182e-16
Identity = 69/215 (32.09%), Postives = 131/215 (60.93%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELD 723
            + ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+    QL+EA  ++    +EA+RK EE+++KL+  E  L  AE R+  +E++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D
Sbjct:   44 VALQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIA----EEADRKYEEVARKLVIIEGDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERTVAKLEKTID 254

[Close]

BLAST of SMED30019887 vs. Ensembl Mouse
Match: Tpm4 (tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202])

HSP 1 Score: 91.2781 bits (225), Expect = 1.140e-20
Identity = 76/238 (31.93%), Postives = 139/238 (58.40%), Query Frame = 1

Query:   76 GPPAALVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDK 789
            G  +   +K +++ L  + +  +D      + +D E+E+  + + ++  L +++ ++++E    + +L    Q+LE   K+A +SER  KV+ENR   D ++M+ LE  +K +   TDEA+RK EE+++KL+  E  L  AE R+  +E +  +LE +LK+V + LKSLE   +K  E+E  Y+ +I+ L+ ++KEAE RA  AE  V K E  +D ++E++ + K     + + LD+
Sbjct:    3 GLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDRAQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITDEADRKYEEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240

[Close]

BLAST of SMED30019887 vs. Ensembl Mouse
Match: Tpm3 (tropomyosin 3, gamma [Source:MGI Symbol;Acc:MGI:1890149])

HSP 1 Score: 88.5817 bits (218), Expect = 1.052e-19
Identity = 74/209 (35.41%), Postives = 124/209 (59.33%), Query Frame = 1

Query:  172 IDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            ++ E+    + + E  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L   E R+  AE++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I  ELD  HA
Sbjct:   35 VEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISDELD--HA 241

[Close]

BLAST of SMED30019887 vs. Ensembl Mouse
Match: Tpm3 (tropomyosin 3, gamma [Source:MGI Symbol;Acc:MGI:1890149])

HSP 1 Score: 88.9669 bits (219), Expect = 1.828e-19
Identity = 72/193 (37.31%), Postives = 117/193 (60.62%), Query Frame = 1

Query:  220 NLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L   E R+  AE++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I  ELD  HA
Sbjct:   87 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISDELD--HA 277

[Close]

BLAST of SMED30019887 vs. Ensembl Mouse
Match: Tpm1 (tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809])

HSP 1 Score: 87.8113 bits (216), Expect = 4.209e-19
Identity = 78/238 (32.77%), Postives = 143/238 (60.08%), Query Frame = 1

Query:   97 IKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+E+R   D ++M+    QL+EA     IA D A+RK EE+++KL+  E  L  AE R+  +E +  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ L+ ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   46 LQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA---KHIAED-ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD--HA 277

[Close]

BLAST of SMED30019887 vs. Ensembl Mouse
Match: Tpm1 (tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809])

HSP 1 Score: 87.8113 bits (216), Expect = 4.418e-19
Identity = 78/238 (32.77%), Postives = 143/238 (60.08%), Query Frame = 1

Query:   97 IKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+E+R   D ++M+    QL+EA     IA D A+RK EE+++KL+  E  L  AE R+  +E +  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ L+ ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   46 LQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA---KHIAED-ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD--HA 277

[Close]

BLAST of SMED30019887 vs. UniProt/SwissProt
Match: sp|Q8WR63|TPM_TRIPS (Tropomyosin OS=Trichinella pseudospiralis OX=6337 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.943e-32
Identity = 88/232 (37.93%), Postives = 151/232 (65.09%), Query Frame = 1

Query:  106 RMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            +M  + NE++K Q+E+   +  ++ +++K  E + E   L +++ +++++    E +LK  ++ LE  S++A +SER RKVMENR   D +R+ QLE  +K + +  +EA+RK +E+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA++RE +Y+ +IR LT ++KEAE RA  AE  V+K + E+D++++E+  EK  Y  I +ELD+   E
Sbjct:   49 KMMQVENELDKAQEELTGANAQLEEKEKKVQEAEAEVAALNRRIQLLEEDFERAEERLKIATEKLEEASQTADESERVRKVMENRSLQDEERVYQLEAQLKEAQLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRLLTQRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKEKYKAISEELDQTFQE 280

[Close]

BLAST of SMED30019887 vs. UniProt/SwissProt
Match: sp|Q95VA8|TPM_TRISP (Tropomyosin OS=Trichinella spiralis OX=6334 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.017e-30
Identity = 86/232 (37.07%), Postives = 149/232 (64.22%), Query Frame = 1

Query:  106 RMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            +M  + NE++K Q+E+   +  ++ +++K  E + E   L +++ +++++    E +L   ++ L   S++A +SER RKVMENR   D +R+ QLE  +K + +  +EA+RK +E+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA++RE +Y+ +IR LT ++KEAE RA  AE  V+K + E+D++++E+  EK  Y  I +ELD+   E
Sbjct:   49 KMMQVENELDKAQEELTGANAQLEEKEKKVQEAEAEVAALNRRIQLLEEDFERAEERLIIATEKLGEASQTADESERVRKVMENRSLQDEERVYQLEAQLKEAQLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRLLTQRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKEKYKAISEELDQTFQE 280

[Close]

BLAST of SMED30019887 vs. UniProt/SwissProt
Match: sp|P42638|TPM2_SCHMA (Tropomyosin-2 OS=Schistosoma mansoni OX=6183 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.638e-27
Identity = 80/205 (39.02%), Postives = 130/205 (63.41%), Query Frame = 1

Query:  196 SEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYFS 810
            +E + E  +L+K++  ++ E    ET+L+E +  LE  SK+A +S+R RKV+ENR  AD +R++QLEE +K S    ++A+RK +E ++KL  +E  L  AE+R   AE++I ELE +L+ V + +KSLEI + +A +RE  Y+  IR LT ++K AE+RA  +E  V   + + D++++E+  EK  Y  + +ELD   AE   
Sbjct:   79 TEAEAEVASLQKRIRQLEDELESTETRLQEATVKLEEASKAADESDRGRKVLENRTFADEERINQLEEQLKESTFMAEDADRKYDEAARKLAITEVELERAESRLEAAESKITELEEELRIVGNNVKSLEISEQEAAQREEAYEENIRDLTERLKAAEDRAQESERLVNTLQADADRLEDELVTEKEKYKALSEELDSTFAELTG 283

[Close]

BLAST of SMED30019887 vs. UniProt/SwissProt
Match: sp|O01673|TPM_ACAVI (Tropomyosin OS=Acanthocheilonema viteae OX=6277 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.925e-27
Identity = 69/171 (40.35%), Postives = 113/171 (66.08%), Query Frame = 1

Query:  298 LEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYFS 810
            LE  + +A +S+R RKVMENR   D +R + +E  +K + +  +EA+RK +E+++KL   E  L  AE R+   EN+I ELE +L+ V + LK LE+ ++KA++RE +Y+ +IR ++ ++KEAE RA  AE  V+K + E+D++++E+  EK  Y +I +ELD+   E F 
Sbjct:  113 LEKATHTADESDRVRKVMENRSFQDEERANTVESQLKEAQLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKFLEVSEEKALQREDSYEEQIRTVSARLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKGRYKNISEELDQTFQELFG 283

[Close]

BLAST of SMED30019887 vs. UniProt/SwissProt
Match: sp|Q9NAS5|TPM_ANISI (Tropomyosin OS=Anisakis simplex OX=6269 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.599e-26
Identity = 70/168 (41.67%), Postives = 112/168 (66.67%), Query Frame = 1

Query:  298 LEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            LE  + +A +SER RKVMENR   D +R + +E  +K + +  +EA+RK +E+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA++RE +Y+ +IR ++ ++KEAE RA  AE  V+K + E+D++++E+  EK  Y  I +ELD+   E
Sbjct:  113 LEEATHTADESERVRKVMENRSFQDEERANTVESQLKEAQMLAEEADRKYDEVARKLTMVEADLERAEERAETGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSARLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKSISEELDQTFQE 280

[Close]

BLAST of SMED30019887 vs. TrEMBL
Match: A0A183L9D1 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS406 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.635e-30
Identity = 90/264 (34.09%), Postives = 167/264 (63.26%), Query Frame = 1

Query:   10 ISL*RIY*NNFLIKIYFPMTQNGPPAALVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            +SL +IY        YF +  + P     +K++M+ +  +I++L+ E+ ++  ++  E+E  ++ + E  +L+K++  ++ E    ET+L+E +  LE  SK+A +S+R RKV+ENR  AD +R++QLEE +K S    ++A+RK +E ++KL  +E ALS AE+R   AE+R+KEL++ +     +LKSLE ++ +A +RE  Y+  IR LT ++K AE+RA  +E  V   + + D+++E ++ E+ N+ ++++E++ M  E
Sbjct:  278 VSLRKIY------SEYFDLRMSSPVIG-AVKSKMQGMKLQIDQLKQELSTKQAILRKEEENKTKAEAEVASLQKRIRQLEDELESTETRLQEATLKLEEASKAADESDRGRKVLENRTFADEERINQLEEQLKESTFMAEDADRKYDEATRKLAVAEVALSHAEDRIEAAESRLKELQSIIHGTMGQLKSLEHQESQAAQREEAYEENIRDLTERLKAAEDRAQESERLVNTLQADADRLEETLEAEQLNHTNLRREMETMFTE 534

[Close]

BLAST of SMED30019887 vs. TrEMBL
Match: A0A183NRU3 (Uncharacterized protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS4829 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.747e-30
Identity = 89/264 (33.71%), Postives = 167/264 (63.26%), Query Frame = 1

Query:   10 ISL*RIY*NNFLIKIYFPMTQNGPPAALVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            +SL +IY   F +++  P+          +K++M+ +  +I++L+ E+ ++  ++  E+E  ++ + E  +L+K++  ++ E    ET+L+E +  LE  SK+A +S+R RKV+ENR  AD +R++QLEE +K S    ++A+RK +E ++KL  +E  L  AE+R   AE++I ELE +L+ V + +KSLEI + +A +RE  Y+  IR LT ++K AE+RA  +E  V   + + D+++E ++ E+ N+ ++++E++ M  E
Sbjct:  189 VSLRKIYSEYFNLRMSSPVIG-------AVKSKMQGMKLQIDQLKQELSTKQAILRKEEENKTKAEAEVASLQKRIRQLEDELESTETRLQEATVKLEEASKAADESDRGRKVLENRTFADEERINQLEEQLKESTFMAEDADRKYDEAARKLAITEVELERAESRLEAAESKITELEEELRIVGNNVKSLEISEQEAAQREEAYEENIRDLTERLKAAEDRAQESERLVNTLQADADRLEETLEAEQLNHTNLRREMETMFTE 445

[Close]

BLAST of SMED30019887 vs. TrEMBL
Match: F0V424 (Tropomyosin (Fragment) OS=Trichinella spiralis OX=6334 GN=l20h-Ts7 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.982e-30
Identity = 88/232 (37.93%), Postives = 151/232 (65.09%), Query Frame = 1

Query:  106 RMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            +M  + NE++K Q+E+   +  ++ +++K  E + E   L +++ +++++    E +LK  ++ LE  S++A +SER RKVMENR   D +R+ QLE  +K + +  +EA+RK +E+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA++RE +Y+ +IR LT ++KEAE RA  AE  V+K + E+D++++E+  EK  Y  I +ELD+   E
Sbjct:   46 KMMQVENELDKAQEELTGANAQLEEKEKKVQEAEAEVAALNRRIQLLEEDFERAEERLKIATEKLEEASQTADESERVRKVMENRSLQDEERVYQLEAQLKEAQLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRLLTQRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKEKYKAISEELDQTFQE 277

[Close]

BLAST of SMED30019887 vs. TrEMBL
Match: A0A0V0TLF5 (Tropomyosin OS=Trichinella murrelli OX=144512 GN=T05_7314 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.723e-30
Identity = 88/232 (37.93%), Postives = 151/232 (65.09%), Query Frame = 1

Query:  106 RMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            +M  + NE++K Q+E+   +  ++ +++K  E + E   L +++ +++++    E +LK  ++ LE  S++A +SER RKVMENR   D +R+ QLE  +K + +  +EA+RK +E+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA++RE +Y+ +IR LT ++KEAE RA  AE  V+K + E+D++++E+  EK  Y  I +ELD+   E
Sbjct:   49 KMMQVENELDKAQEELTGANAQLEEKEKKVQEAEAEVAALNRRIQLLEEDFERAEERLKIATEKLEEASQTADESERVRKVMENRSLQDEERVYQLEAQLKEAQLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRLLTQRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKEKYKAISEELDQTFQE 280

[Close]

BLAST of SMED30019887 vs. TrEMBL
Match: A0A0V1PD74 (Tropomyosin OS=Trichinella sp. T8 OX=92180 GN=T08_7961 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.723e-30
Identity = 88/232 (37.93%), Postives = 151/232 (65.09%), Query Frame = 1

Query:  106 RMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            +M  + NE++K Q+E+   +  ++ +++K  E + E   L +++ +++++    E +LK  ++ LE  S++A +SER RKVMENR   D +R+ QLE  +K + +  +EA+RK +E+++KL   E  L  AE R+   EN+I ELE +L+ V + LKSLE+ ++KA++RE +Y+ +IR LT ++KEAE RA  AE  V+K + E+D++++E+  EK  Y  I +ELD+   E
Sbjct:   49 KMMQVENELDKAQEELTGANAQLEEKEKKVQEAEAEVAALNRRIQLLEEDFERAEERLKIATEKLEEASQTADESERVRKVMENRSLQDEERVYQLEAQLKEAQLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRLLTQRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKEKYKAISEELDQTFQE 280

[Close]

BLAST of SMED30019887 vs. Ensembl Cavefish
Match: tpm1 (tropomyosin 1 [Source:NCBI gene;Acc:103046255])

HSP 1 Score: 90.8929 bits (224), Expect = 2.395e-20
Identity = 75/236 (31.78%), Postives = 142/236 (60.17%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            + ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L   E R+  +E++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   44 VALQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIVEGELERTEERAELSESKCAELEEELKTVTNTLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELD--HA 277

[Close]

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            + ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L   E R+  +E++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   44 VALQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIVEGELERTEERAELSESKCAELEEELKTVTNTLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELD--HA 277

[Close]

BLAST of SMED30019887 vs. Ensembl Cavefish
Match: tpma (tropomyosin alpha-1 chain [Source:NCBI gene;Acc:103040917])

HSP 1 Score: 88.9669 bits (219), Expect = 1.094e-19
Identity = 77/240 (32.08%), Postives = 143/240 (59.58%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            + ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+    QL+EA  ++    +EA+RK EE+++KL+  E  L   E R+   E +  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   44 VALQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMEIQEIQLKEAKHIA----EEADRKYEEVARKLVIVEGELERTEERAELNEGKCSELEEELKTVTNLLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYSQKLKYKAISEELD--HA 277

[Close]

BLAST of SMED30019887 vs. Ensembl Cavefish
Match: tpm2 (tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114])

HSP 1 Score: 86.2705 bits (212), Expect = 1.097e-18
Identity = 77/233 (33.05%), Postives = 140/233 (60.09%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEIL-SRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELD 786
            L ++ ++K + +E++K  + +  +++KL   EK K ++ + E  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L  +E R+  AE +  +LE +LK+V + LKSLE + +K   +E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K     + +ELD
Sbjct:   44 LGLQKKLKGVEDELDKYSESLKDAQEKLEQAEK-KATDAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRATKDEEKMELQEMQLKEAKHIAEEADRKYEEVARKLVILEGDLERSEERAEVAEAKSGDLEEELKNVTNNLKSLEAQAEKYSTKEDKYEEEIKVLTEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKLKGKALSEELD 275

[Close]

BLAST of SMED30019887 vs. Ensembl Cavefish
Match: tpm1 (tropomyosin 1 [Source:NCBI gene;Acc:103046255])

HSP 1 Score: 80.4925 bits (197), Expect = 1.221e-16
Identity = 65/176 (36.93%), Postives = 106/176 (60.23%), Query Frame = 1

Query:  202 VKLESD--NLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELD 723
             K E D  +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L   E R+  +E++  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D
Sbjct:   79 TKAEGDVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIVEGELERTEERAELSESKCAELEEELKTVTNTLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTID 254

[Close]

BLAST of SMED30019887 vs. Ensembl Sea Lamprey
Match: tpm3 (tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16])

HSP 1 Score: 88.5817 bits (218), Expect = 6.917e-21
Identity = 68/189 (35.98%), Postives = 115/189 (60.85%), Query Frame = 1

Query:  220 NLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELD 786
            +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR + D ++M+  E  +K +    +E++RK EE+++KL+  E  L   E R+  A+ +  ELE +LK V + LKSLE + DK  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  + +ELD
Sbjct:    8 SLNRRIQLVEEELDRAQERLSTALQKLEEAEKAADESERGMKVIENRASKDEEKMELQEIQLKEAKHIAEESDRKYEEVARKLVILEGDLERTEERAEVADAKCSELEEELKVVTNNLKSLEAQSDKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKSIDDLEDEVYAQKLKYKSVSEELD 196

[Close]

BLAST of SMED30019887 vs. Ensembl Sea Lamprey
Match: TPM4 (tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013])

HSP 1 Score: 84.3445 bits (207), Expect = 2.378e-19
Identity = 66/193 (34.20%), Postives = 117/193 (60.62%), Query Frame = 1

Query:  220 NLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            +L +++ ++++E    + +L    Q LE  +K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L   E R+   E R+++LE +L+ +   +KSL + +++  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:    9 SLNRRIQLVEEELDRAQERLATALQKLEEATKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGELERTEERAEVGETRVRQLEEELRVMDQNMKSLLVAEEQYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYSQKLKYKAISEELD--HA 199

[Close]

BLAST of SMED30019887 vs. Ensembl Sea Lamprey
Match: TPM4 (tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013])

HSP 1 Score: 75.485 bits (184), Expect = 2.312e-16
Identity = 57/168 (33.93%), Postives = 102/168 (60.71%), Query Frame = 1

Query:  220 NLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELD 723
            +L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L   E R+  +E R++++E +L+ V  +L+SL   +++  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D
Sbjct:    8 SLNRRIQLVEEELDRAQERLTTALQKLEDAEKAADESERGMKVIENRAGKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAEISETRVRQMEDELRHVQEELRSLFASEEQYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTID 175

[Close]

BLAST of SMED30019887 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009404.1 (pep scaffold:Pmarinus_7.0:GL481466:589:9607:1 gene:ENSPMAG00000008509.1 transcript:ENSPMAT00000009404.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 52.373 bits (124), Expect = 8.094e-9
Identity = 39/113 (34.51%), Postives = 68/113 (60.18%), Query Frame = 1

Query:  451 ELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDK 789
            ++++KLI  E  L  AE R+  AE +   LE DLK++ + LKSL  + ++  ++E  ++ +I+ L+ ++KE E+RA  AE  V K E  +D ++E++ R K     I + LD+
Sbjct:    2 QVARKLIVLESDLERAEERADHAETKCSALEEDLKNMTNDLKSLMAQNEEYSQKEDKFEEEIKVLSEKLKEVEQRAEYAERTVVKLENSIDDLEEQLARAKEENLGINQVLDQ 114

[Close]

BLAST of SMED30019887 vs. Ensembl Nematostella
Match: EDO37230 (Predicted protein; Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q6S5G5])

HSP 1 Score: 83.1889 bits (204), Expect = 2.715e-18
Identity = 72/178 (40.45%), Postives = 113/178 (63.48%), Query Frame = 1

Query:  268 ETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            E+KL +    L    K A +SER RKV+ENR  +D +R+  LE     +L  T+EA ++ EE+S++L + E+ L EAE ++  AE R+KELE ++  V + L+SLEI + KA ERE  Y+ +IR L  ++++AEERA  AE  V++ E + + ++ E+++ K  Y  +K+ELD   AE
Sbjct:   61 ESKLADTQGQLTEAEKQADESERARKVLENRGASDEERLASLERQYNDALERTEEAEKQYEEISERLQELENELEEAEQKADAAEARVKELEEEVTLVGNNLRSLEISEGKASEREDTYENQIRELETKLQDAEERAEKAEQKVQELEAQAEAMEAELEKAKEQYEKVKEELDSTLAE 238

[Close]

BLAST of SMED30019887 vs. Ensembl Medaka
Match: tpm4a (tropomyosin 4 [Source:NCBI gene;Acc:101160801])

HSP 1 Score: 90.8929 bits (224), Expect = 5.360e-20
Identity = 77/236 (32.63%), Postives = 142/236 (60.17%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            L ++ ++K   +E++K  + +    + +++ ++K ++ + +   L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L  AE R+  +E++  +LE +LK+V + LKSLE + +K  E+E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:  101 LDLQKKLKQTEDELDKFSEGLKDAQEKLELAEKKAADAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGDLERAEERAEVSESKASDLEEELKNVTNNLKSLEAQAEKYSEKEDKYEEEIKVLTDKLKEAETRAEFAERTVTKLEKSIDDLEDELYAQKLKYKAISEELD--HA 334

[Close]

BLAST of SMED30019887 vs. Ensembl Medaka
Match: ENSORLT00000046199.1 (tropomyosin alpha-1 chain [Source:NCBI gene;Acc:101164789])

HSP 1 Score: 87.8113 bits (216), Expect = 1.522e-19
Identity = 74/210 (35.24%), Postives = 125/210 (59.52%), Query Frame = 1

Query:  175 DIEKEKNSEVKLESD--NLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            D+ +E+++    E D  +L +++ ++++E    + +L      LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L   E R+  +E +  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   34 DLNQERSAREAAEGDVASLNRRIQLVEEELDRAQERLATALTKLEEAEKAADESERGMKVIENRAMKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIESDLERTEERAELSEGKCSELEEELKTVQNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYSQKLKYKAISEELD--HA 241

[Close]

BLAST of SMED30019887 vs. Ensembl Medaka
Match: tpm4a (tropomyosin 4 [Source:NCBI gene;Acc:101160801])

HSP 1 Score: 87.8113 bits (216), Expect = 1.729e-19
Identity = 79/246 (32.11%), Postives = 140/246 (56.91%), Query Frame = 1

Query:   76 GPPAALVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYFSV 813
            G  +   +K +++ L  + ++ +D   S  K +D E+E   + + +   L +++ ++++E    + +L    Q LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L  AE R+  +E++  +LE +LK+V + LKSLE + +K  E+E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D ++E++   K     + K LD+   E  S+
Sbjct:    3 GMNSLDAVKRKIQCLQQQADEAEDRAESLQKELDNERELREKAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGDLERAEERAEVSESKASDLEEELKNVTNNLKSLEAQAEKYSEKEDKYEEEIKVLTDKLKEAETRAEFAERTVTKLEKSIDDLEEKLSHAKEENVSMHKVLDQTLQELNSL 248

[Close]

BLAST of SMED30019887 vs. Ensembl Medaka
Match: ENSORLT00000015429.2 (tropomyosin alpha-1 chain [Source:NCBI gene;Acc:101164789])

HSP 1 Score: 87.8113 bits (216), Expect = 2.924e-19
Identity = 74/236 (31.36%), Postives = 140/236 (59.32%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            + ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L      LE   K+A +SER  KV+ENR   D ++M+  E  +K +    +EA+RK EE+++KL+  E  L   E R+  +E +  ELE +LK+V + LKSLE + +K  ++E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   44 VALQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALTKLEEAEKAADESERGMKVIENRAMKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIESDLERTEERAELSEGKCSELEEELKTVQNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYSQKLKYKAISEELD--HA 277

[Close]

BLAST of SMED30019887 vs. Ensembl Medaka
Match: TPM1 (tropomyosin 1 [Source:NCBI gene;Acc:101168205])

HSP 1 Score: 86.6557 bits (213), Expect = 8.645e-19
Identity = 76/240 (31.67%), Postives = 142/240 (59.17%), Query Frame = 1

Query:   91 LVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMD----QLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHA 798
            + ++ ++K   +E++K  + +    + +++ ++K ++ + +  +L +++ ++++E    + +L      LE   K+A +SER  KV+ENR   D ++M+    QL+EA  ++    +EA+RK EE+++KL+  E  L   E R+  +E +  ELE +LK+V + LKSLE + +K   +E  Y+ +I+ LT ++KEAE RA  AE  V K E  +D +++E+  +K  Y  I +ELD  HA
Sbjct:   44 VALQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAESDVASLNRRIQLVEEELDRAQERLATALTKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEIQLKEAKHIA----EEADRKYEEVARKLVIIESDLERTEERAELSEGKCSELEEELKTVTNNLKSLEAQAEKYSLKEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYSQKLKYKAISEELD--HA 277

[Close]

BLAST of SMED30019887 vs. Planmine SMEST
Match: SMESG000011341.1 (SMESG000011341.1)

HSP 1 Score: 476.863 bits (1226), Expect = 1.617e-170
Identity = 248/250 (99.20%), Postives = 248/250 (99.20%), Query Frame = 1

Query:   64 MTQNGPPAALVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYFSV 813
            MTQNGPPAALVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLE ISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAE DVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYFSV
Sbjct:    1 MTQNGPPAALVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEKISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEQDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYFSV 250

[Close]

BLAST of SMED30019887 vs. Planmine SMEST
Match: SMESG000041543.1 (SMESG000041543.1)

HSP 1 Score: 121.709 bits (304), Expect = 5.803e-32
Identity = 84/246 (34.15%), Postives = 153/246 (62.20%), Query Frame = 1

Query:   76 GPPAALVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYFSV 813
            G  A   +K++M+ L  EI++L+ +I  +DKL+  E  K S +  E + L KK+  ++ +  + + KL   S  L+ +SK A  +ER R+ +E+R+  +  ++ +LE  ++ +L     AN+K +E+SK L  SE  L+EAE+RS  A  R+KE ++++  V+  LKS+E+ + KA  RE NY+ +I  +TLQ+K+A+ R    E D +++   L+ ++E++++EK N+Y +K +L+KM  E+ ++
Sbjct:    4 GNSAVNALKSKMQNLKTEIDELKSKIEEKDKLLQEEIHKKSSIDQEIETLNKKIRELESQTDELDEKLSLSSIELDEVSKRADINERTRRGLESRKQNNDSKICKLESQLQEALNLKAAANKKYDEISKALKDSEMKLAEAEDRSEAATKRLKETDSEMHGVSHTLKSMELNESKATLREENYEKQINKITLQLKDAQTRYEIQESDYKRQVTLLENLEEQVEQEKENHYKLKNDLEKMMEEFQNI 249

[Close]

BLAST of SMED30019887 vs. Planmine SMEST
Match: SMESG000000190.1 (SMESG000000190.1)

HSP 1 Score: 108.612 bits (270), Expect = 8.570e-27
Identity = 73/178 (41.01%), Postives = 114/178 (64.04%), Query Frame = 1

Query:  268 ETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAE 801
            ET+L+E +   E  SK+A +SER RKV+E R  AD +R+ QLEE +K +    ++A+RK +E ++KL  +E  L  AE+R   A+N++ ELE +L+ V + +KSLEI + +AV+RE  Y+  IR  T ++K  E+RA  AE  V   + E+D++++E+  EK  Y  + +ELD   AE
Sbjct:  103 ETRLQEATVKYEEASKAADESERGRKVLETRSIADEERLAQLEEQLKEAKYIAEDADRKYDEAARKLAITEVDLERAESRLESADNKVLELEEELRVVGNNMKSLEISEQEAVQREEVYEETIRDFTDKLKSTEQRATEAERQVATLQTEVDRIEDELLAEKEKYKQLSEELDSAFAE 280

[Close]

BLAST of SMED30019887 vs. Planmine SMEST
Match: SMESG000074053.1 (SMESG000074053.1)

HSP 1 Score: 104.375 bits (259), Expect = 2.742e-25
Identity = 76/235 (32.34%), Postives = 140/235 (59.57%), Query Frame = 1

Query:  109 MKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYFSV 813
            ++T   E ++ Q+ +   +  ++  +++ ++ + E   L +++ +I+ +    E++ +E S  LE  SK+A +SE+ RK++E R  AD +++ QLEE +K +    ++A+RK +E+++KL  +E  L   E R    E++  ELE +LK V + +KSLEI + +A +RE +Y+  IR LT ++K AE+RA  AE  V K + E+D++++++  EK  Y  +  ELD   AE    
Sbjct:   43 LQTAQTECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESRFQEASAKLEEASKNAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEVARKLAIAEVDLERTEARLENCESKTLELEEELKVVGNNMKSLEISEQEAAQREESYEDTIRDLTERLKAAEQRATEAERQVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGC 277

[Close]

BLAST of SMED30019887 vs. Planmine SMEST
Match: SMESG000074053.1 (SMESG000074053.1)

HSP 1 Score: 104.375 bits (259), Expect = 3.232e-25
Identity = 76/235 (32.34%), Postives = 140/235 (59.57%), Query Frame = 1

Query:  109 MKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLESDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQNADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSAFAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKEAEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYFSV 813
            ++T   E ++ Q+ +   +  ++  +++ ++ + E   L +++ +I+ +    E++ +E S  LE  SK+A +SE+ RK++E R  AD +++ QLEE +K +    ++A+RK +E+++KL  +E  L   E R    E++  ELE +LK V + +KSLEI + +A +RE +Y+  IR LT ++K AE+RA  AE  V K + E+D++++++  EK  Y  +  ELD   AE    
Sbjct:   50 LQTAQTECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTESRFQEASAKLEEASKNAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDEVARKLAIAEVDLERTEARLENCESKTLELEEELKVVGNNMKSLEISEQEAAQREESYEDTIRDLTERLKAAEQRATEAERQVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGC 284

The following BLAST results are available for this feature:

BLAST of SMED30019887 vs. Ensembl Human
BLAST of SMED30019887 vs. Ensembl Celegans
BLAST of SMED30019887 vs. Ensembl Fly
BLAST of SMED30019887 vs. Ensembl Zebrafish
BLAST of SMED30019887 vs. Ensembl Xenopus
BLAST of SMED30019887 vs. Ensembl Mouse
BLAST of SMED30019887 vs. UniProt/SwissProt
BLAST of SMED30019887 vs. TrEMBL
BLAST of SMED30019887 vs. Ensembl Cavefish
BLAST of SMED30019887 vs. Ensembl Sea Lamprey
BLAST of SMED30019887 vs. Ensembl Yeast
BLAST of SMED30019887 vs. Ensembl Nematostella
BLAST of SMED30019887 vs. Ensembl Medaka
BLAST of SMED30019887 vs. Planmine SMEST

BLAST of SMED30019887 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
TPM3	1.632e-19	37.31	tropomyosin 3 [Source:HGNC Symbol;Acc:HGNC:12012]	[more]
TPM1	5.511e-19	32.77	tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010]	[more]
TPM1	5.693e-19	30.61	tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010]	[more]
TPM1	5.841e-19	32.77	tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010]	[more]
TPM1	6.656e-19	30.61	tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010]	[more]

BLAST of SMED30019887 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lev-11	4.669e-27	35.75	Tropomyosin isoforms a/b/d/f [Source:UniProtKB/Sw...	[more]
lev-11	2.332e-26	40.35	Tropomyosin isoforms a/b/d/f [Source:UniProtKB/Sw...	[more]
lev-11	2.332e-26	40.35	Tropomyosin isoforms a/b/d/f [Source:UniProtKB/Sw...	[more]
lev-11	6.781e-26	35.55	Tropomyosin isoforms a/b/d/f [Source:UniProtKB/Sw...	[more]
lev-11	1.761e-25	40.12	Tropomyosin isoforms a/b/d/f [Source:UniProtKB/Sw...	[more]

BLAST of SMED30019887 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Tm1	2.608e-24	34.57	gene:FBgn0003721 transcript:FBtr0333917	[more]
Tm1	4.197e-23	33.33	gene:FBgn0003721 transcript:FBtr0305656	[more]
Tm2	1.739e-21	37.72	gene:FBgn0004117 transcript:FBtr0083080	[more]
Tm1	2.397e-21	34.31	gene:FBgn0003721 transcript:FBtr0305654	[more]
Tm1	2.397e-21	34.31	gene:FBgn0003721 transcript:FBtr0089964	[more]

BLAST of SMED30019887 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tpm3	5.059e-21	33.33	tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]	[more]
tpm1	2.258e-20	32.50	tropomyosin 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-04...	[more]
tpm1	2.718e-20	32.50	tropomyosin 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-04...	[more]
tpm1	1.285e-19	37.06	tropomyosin 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-04...	[more]
tpm1	1.517e-19	37.06	tropomyosin 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-04...	[more]

BLAST of SMED30019887 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tpm1	2.177e-20	32.20	tropomyosin 1 [Source:NCBI gene;Acc:448541]	[more]
tpm1	2.252e-20	32.20	tropomyosin 1 [Source:NCBI gene;Acc:448541]	[more]
tpm1	6.121e-18	30.47	tropomyosin 1 [Source:NCBI gene;Acc:448541]	[more]
tpm1	4.255e-17	31.75	tropomyosin 1 [Source:NCBI gene;Acc:448541]	[more]
tpm1	1.182e-16	32.09	tropomyosin 1 [Source:NCBI gene;Acc:448541]	[more]

BLAST of SMED30019887 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Tpm4	1.140e-20	31.93	tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]	[more]
Tpm3	1.052e-19	35.41	tropomyosin 3, gamma [Source:MGI Symbol;Acc:MGI:18...	[more]
Tpm3	1.828e-19	37.31	tropomyosin 3, gamma [Source:MGI Symbol;Acc:MGI:18...	[more]
Tpm1	4.209e-19	32.77	tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98...	[more]
Tpm1	4.418e-19	32.77	tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98...	[more]

BLAST of SMED30019887 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q8WR63\|TPM_TRIPS	2.943e-32	37.93	Tropomyosin OS=Trichinella pseudospiralis OX=6337 ...	[more]
sp\|Q95VA8\|TPM_TRISP	2.017e-30	37.07	Tropomyosin OS=Trichinella spiralis OX=6334 PE=2 S...	[more]
sp\|P42638\|TPM2_SCHMA	2.638e-27	39.02	Tropomyosin-2 OS=Schistosoma mansoni OX=6183 PE=2 ...	[more]
sp\|O01673\|TPM_ACAVI	9.925e-27	40.35	Tropomyosin OS=Acanthocheilonema viteae OX=6277 PE...	[more]
sp\|Q9NAS5\|TPM_ANISI	4.599e-26	41.67	Tropomyosin OS=Anisakis simplex OX=6269 PE=1 SV=1	[more]

BLAST of SMED30019887 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A183L9D1	1.635e-30	34.09	Uncharacterized protein OS=Schistosoma margrebowie...	[more]
A0A183NRU3	3.747e-30	33.71	Uncharacterized protein OS=Schistosoma mattheei OX...	[more]
F0V424	6.982e-30	37.93	Tropomyosin (Fragment) OS=Trichinella spiralis OX=...	[more]
A0A0V0TLF5	8.723e-30	37.93	Tropomyosin OS=Trichinella murrelli OX=144512 GN=T...	[more]
A0A0V1PD74	8.723e-30	37.93	Tropomyosin OS=Trichinella sp. T8 OX=92180 GN=T08_...	[more]

BLAST of SMED30019887 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tpm1	2.395e-20	31.78	tropomyosin 1 [Source:NCBI gene;Acc:103046255]	[more]
tpm1	2.395e-20	31.78	tropomyosin 1 [Source:NCBI gene;Acc:103046255]	[more]
tpma	1.094e-19	32.08	tropomyosin alpha-1 chain [Source:NCBI gene;Acc:10...	[more]
tpm2	1.097e-18	33.05	tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040...	[more]
tpm1	1.221e-16	36.93	tropomyosin 1 [Source:NCBI gene;Acc:103046255]	[more]

BLAST of SMED30019887 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 4


Match Name	E-value	Identity	Description
tpm3	6.917e-21	35.98	tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]	[more]
TPM4	2.378e-19	34.20	tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013]	[more]
TPM4	2.312e-16	33.93	tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013]	[more]
ENSPMAT00000009404.1	8.094e-9	34.51	pep scaffold:Pmarinus_7.0:GL481466:589:9607:1 gene...	[more]

BLAST of SMED30019887 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30019887 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO37230	2.715e-18	40.45	Predicted protein; Tropomyosin [Source:UniProtKB/...	[more]

BLAST of SMED30019887 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tpm4a	5.360e-20	32.63	tropomyosin 4 [Source:NCBI gene;Acc:101160801]	[more]
ENSORLT00000046199.1	1.522e-19	35.24	tropomyosin alpha-1 chain [Source:NCBI gene;Acc:10...	[more]
tpm4a	1.729e-19	32.11	tropomyosin 4 [Source:NCBI gene;Acc:101160801]	[more]
ENSORLT00000015429.2	2.924e-19	31.36	tropomyosin alpha-1 chain [Source:NCBI gene;Acc:10...	[more]
TPM1	8.645e-19	31.67	tropomyosin 1 [Source:NCBI gene;Acc:101168205]	[more]

BLAST of SMED30019887 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000011341.1	1.617e-170	99.20	SMESG000011341.1	[more]
SMESG000041543.1	5.803e-32	34.15	SMESG000041543.1	[more]
SMESG000000190.1	8.570e-27	41.01	SMESG000000190.1	[more]
SMESG000074053.1	2.742e-25	32.34	SMESG000074053.1	[more]
SMESG000074053.1	3.232e-25	32.34	SMESG000074053.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30019887 ID=SMED30019887|Name=SMED30019887|organism=Schmidtea mediterranea sexual|type=transcript|length=1213bp
GTTTAAATTATTTCACTTTAACGCATATATTGAAATAATTTTTTAATTAA
AATATATTTTCCAATGACACAAAACGGACCTCCAGCTGCTTTAGTTATTA
AAGCAAGAATGAAAACACTAAATAATGAAATAGAGAAATTACAAGATGAA
ATATTGAGTAGAGATAAACTTATTGATATTGAAAAAGAAAAGAATTCTGA
AGTTAAATTAGAGTCTGATAATCTCAAGAAAAAATTAGCCATAATTGATC
AAGAAAAATTAGATTTTGAAACTAAGTTAAAAGAAGTTAGCCAGAGTTTG
GAAATAATTAGTAAAAGTGCCCATAAAAGCGAAAGAGAAAGAAAAGTTAT
GGAAAATCGTCAAAATGCAGACAGTGATCGTATGGATCAATTGGAAGAAG
CTATAAAATTATCACTAATTGCTACTGACGAAGCTAATAGAAAATCTGAG
GAATTGTCAAAGAAACTTATTCAATCTGAGCACGCATTGTCGGAAGCAGA
AAATCGTTCAGCTTTTGCTGAGAATCGAATTAAAGAATTAGAAGCCGATT
TGAAATCGGTTGCCTCTAAACTGAAATCACTGGAAATAAAAAAAGATAAA
GCAGTGGAAAGAGAAGTTAATTACGATGCGAAAATCCGATGTCTCACGCT
GCAAGTCAAAGAAGCCGAAGAACGAGCCATCGCAGCTGAGCACGACGTGA
GAAAACGGGAATTTGAATTGGATAAAGTCAAAGAAGAAATCGATAGAGAA
AAAGCCAATTATTATCACATTAAAAAGGAATTGGATAAAATGCACGCGGA
GTATTTCTCAGTGTGACGAGAAACTAAATCAATAGGAATATTGGATTTTA
TGATTTTAATTTAGAATTTATTATTATTAATTTTATTGTAAATTAACGCT
TTTATGTTTCATTTGCTTACCGGCACGCGTTTGCCTGTGTCTGGATAATT
GGAGCATTGTGATTGATTTTATTGCTTTATTTTCTTTCGGATTTTCAATG
GGATTTTATTTAATAATTATTATTATTACTTTTATGGTTATTATTGCAAT
TGCACTGTGTTTATATCGAATATATATATTGATAATTTGATTGGTCAATC
TTTGTTTTATTAATAGTTACTATTATTTTAATGTTAAATTGATTCGTGTT
TTAAAGACAATTAATAATTTTACCAGTTTTTTAGTTTCGATGAATAAATG
TTTTTTAATTGAA

protein sequence of SMED30019887-orf-1

>SMED30019887-orf-1 ID=SMED30019887-orf-1|Name=SMED30019887-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=251bp
MTQNGPPAALVIKARMKTLNNEIEKLQDEILSRDKLIDIEKEKNSEVKLE
SDNLKKKLAIIDQEKLDFETKLKEVSQSLEIISKSAHKSERERKVMENRQ
NADSDRMDQLEEAIKLSLIATDEANRKSEELSKKLIQSEHALSEAENRSA
FAENRIKELEADLKSVASKLKSLEIKKDKAVEREVNYDAKIRCLTLQVKE
AEERAIAAEHDVRKREFELDKVKEEIDREKANYYHIKKELDKMHAEYFSV
*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000099	neuron

Vocabulary: **INTERPRO**
Term	Definition
IPR000533	Tropomyosin

Vocabulary: **molecular function**
Term	Definition
GO:0003674	molecular_function

Vocabulary: **cellular component**
Term	Definition
GO:0005575	cellular_component

Vocabulary: **biological process**
Term	Definition
GO:0008150	biological_process

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 191..239
None	No IPR available	COILS	Coil	Coil	coord: 72..99
None	No IPR available	COILS	Coil	Coil	coord: 9..64
None	No IPR available	COILS	Coil	Coil	coord: 128..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..105
None	No IPR available	PANTHER	PTHR19269	TROPOMYOSIN	coord: 11..245
None	No IPR available	PANTHER	PTHR19269:SF45	TROPOMYOSIN-1, ISOFORMS 33/34	coord: 11..245
None	No IPR available	SUPERFAMILY	SSF57997	Tropomyosin	coord: 12..246
IPR000533	Tropomyosin	PRINTS	PR00194	TROPOMYOSIN	coord: 141..164 score: 39.48 coord: 15..32 score: 21.09 coord: 86..106 score: 48.04 coord: 197..222 score: 44.92 coord: 111..139 score: 34.42
IPR000533	Tropomyosin	PFAM	PF00261	Tropomyosin	coord: 15..243 e-value: 1.6E-41 score: 142.3

Main menu

SMED30019887

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Owlery

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