SMED30019814

Overview
NameSMED30019814
Smed IDSMED30019814
Length (bp)1420
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30019814 (SMED30019814) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30019814 (SMED30019814) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30019814 (SMED30019814) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30019814 (SMED30019814) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30019814

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
cephalic gangliaSMED30019814h1SMcG0005262 dd_Smed_v4_8142_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30019814h1SMcG0005262 dd_Smed_v4_8142_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30019814 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.006255:8519..22020 +6849
Homology
BLAST of SMED30019814 vs. Planmine SMEST
Match: SMESG000050492.1 (SMESG000050492.1)

HSP 1 Score: 871.692 bits (2251), Expect = 0.000e+0
Identity = 458/463 (98.92%), Postives = 459/463 (99.14%), Query Frame = 1
Query:   28 TRDTNLIAMLFQLSTNLYLLTSILIGFIKCQPNNYIHAEMEGNLDDKRGFNFTLVTRNSSGVILYAVNSERNFLIKLENSRIIMKYKNYTIEKPLWKICGFSVNHFWKYFVMLRHLEVQVTCDGKFHSLVFKDIKKVIYSNYXXXXXXXXXXXXXYIWMGNVGPYTGEGDVVTQPMKNQLYGCLDKFYFHYKLIQMFTKASNFKVCSDNFYNETICYNETSCQKKVTSYKIDDCSLLSMNGIYCLPNYQIYGNLVNSFQRSDQLKKIVNFKLYWKSLLENNFCLLEIKSRDSTIVIFINQNSQMKMKLPQRNGILLRNLSIKNKRNIQQFLLVSVTPSELWVKVYSDGDIKVFVTSIKFDPITINVGKSQQSEICRTFQGMIDVQYDPTQFTLDVGILKKPLFISGIXXXXXXXXXXXXXXXXXTIRFSSMSECAWKSHLKFKKTDKTFNREDSDKYSTIYDS 1416
            TRDTNLIAMLF LSTNLYLLTSILIGFIKCQPNNYIHAEMEGNLDDKRGFNFTLVTRNSSGVILYAV+SERNFLIKLENSRIIMKYKNYTIEKPLWKICGFSVNH WKYFVMLRHLEVQVTCDGKFHSLVFKDIKKVIYSNYPKPKELKESSSKSYIWMGNVGPYTGEGDVVTQPMKNQLYGCLDKFYFHYKLIQMFTKASNFKVCSDNFYNETICYNETSCQKKVTSYKIDDCSLLSMNGIYCLPNYQ YGNLVNSFQRSDQLKKIVNFKLYWKSLLENNFCLLEIKSRDSTIVIFINQNSQMKMKLPQRNGILLRNLSIKNKRNIQQFLLVSVTPSELWVKVYSDGDIKVFVTSIKFDPITINVGKSQQSEICRTFQGMIDVQYDPTQFTLDVGILKKPLFISGILLVLFVGLLVVY LKVKTIRFSSMSECAWKSHLKFKKTDKTFNREDSDKYSTIYDS
Sbjct:    3 TRDTNLIAMLFHLSTNLYLLTSILIGFIKCQPNNYIHAEMEGNLDDKRGFNFTLVTRNSSGVILYAVDSERNFLIKLENSRIIMKYKNYTIEKPLWKICGFSVNHIWKYFVMLRHLEVQVTCDGKFHSLVFKDIKKVIYSNYPKPKELKESSSKSYIWMGNVGPYTGEGDVVTQPMKNQLYGCLDKFYFHYKLIQMFTKASNFKVCSDNFYNETICYNETSCQKKVTSYKIDDCSLLSMNGIYCLPNYQTYGNLVNSFQRSDQLKKIVNFKLYWKSLLENNFCLLEIKSRDSTIVIFINQNSQMKMKLPQRNGILLRNLSIKNKRNIQQFLLVSVTPSELWVKVYSDGDIKVFVTSIKFDPITINVGKSQQSEICRTFQGMIDVQYDPTQFTLDVGILKKPLFISGILLVLFVGLLVVYSLKVKTIRFSSMSECAWKSHLKFKKTDKTFNREDSDKYSTIYDS 465          
BLAST of SMED30019814 vs. Planmine SMEST
Match: SMESG000050492.1 (SMESG000050492.1)

HSP 1 Score: 855.514 bits (2209), Expect = 0.000e+0
Identity = 450/455 (98.90%), Postives = 451/455 (99.12%), Query Frame = 1
Query:   52 MLFQLSTNLYLLTSILIGFIKCQPNNYIHAEMEGNLDDKRGFNFTLVTRNSSGVILYAVNSERNFLIKLENSRIIMKYKNYTIEKPLWKICGFSVNHFWKYFVMLRHLEVQVTCDGKFHSLVFKDIKKVIYSNYXXXXXXXXXXXXXYIWMGNVGPYTGEGDVVTQPMKNQLYGCLDKFYFHYKLIQMFTKASNFKVCSDNFYNETICYNETSCQKKVTSYKIDDCSLLSMNGIYCLPNYQIYGNLVNSFQRSDQLKKIVNFKLYWKSLLENNFCLLEIKSRDSTIVIFINQNSQMKMKLPQRNGILLRNLSIKNKRNIQQFLLVSVTPSELWVKVYSDGDIKVFVTSIKFDPITINVGKSQQSEICRTFQGMIDVQYDPTQFTLDVGILKKPLFISGIXXXXXXXXXXXXXXXXXTIRFSSMSECAWKSHLKFKKTDKTFNREDSDKYSTIYDS 1416
            MLF LSTNLYLLTSILIGFIKCQPNNYIHAEMEGNLDDKRGFNFTLVTRNSSGVILYAV+SERNFLIKLENSRIIMKYKNYTIEKPLWKICGFSVNH WKYFVMLRHLEVQVTCDGKFHSLVFKDIKKVIYSNYPKPKELKESSSKSYIWMGNVGPYTGEGDVVTQPMKNQLYGCLDKFYFHYKLIQMFTKASNFKVCSDNFYNETICYNETSCQKKVTSYKIDDCSLLSMNGIYCLPNYQ YGNLVNSFQRSDQLKKIVNFKLYWKSLLENNFCLLEIKSRDSTIVIFINQNSQMKMKLPQRNGILLRNLSIKNKRNIQQFLLVSVTPSELWVKVYSDGDIKVFVTSIKFDPITINVGKSQQSEICRTFQGMIDVQYDPTQFTLDVGILKKPLFISGILLVLFVGLLVVY LKVKTIRFSSMSECAWKSHLKFKKTDKTFNREDSDKYSTIYDS
Sbjct:    1 MLFHLSTNLYLLTSILIGFIKCQPNNYIHAEMEGNLDDKRGFNFTLVTRNSSGVILYAVDSERNFLIKLENSRIIMKYKNYTIEKPLWKICGFSVNHIWKYFVMLRHLEVQVTCDGKFHSLVFKDIKKVIYSNYPKPKELKESSSKSYIWMGNVGPYTGEGDVVTQPMKNQLYGCLDKFYFHYKLIQMFTKASNFKVCSDNFYNETICYNETSCQKKVTSYKIDDCSLLSMNGIYCLPNYQTYGNLVNSFQRSDQLKKIVNFKLYWKSLLENNFCLLEIKSRDSTIVIFINQNSQMKMKLPQRNGILLRNLSIKNKRNIQQFLLVSVTPSELWVKVYSDGDIKVFVTSIKFDPITINVGKSQQSEICRTFQGMIDVQYDPTQFTLDVGILKKPLFISGILLVLFVGLLVVYSLKVKTIRFSSMSECAWKSHLKFKKTDKTFNREDSDKYSTIYDS 455          
BLAST of SMED30019814 vs. Planmine SMEST
Match: SMESG000050280.1 (SMESG000050280.1)

HSP 1 Score: 191.045 bits (484), Expect = 4.167e-55
Identity = 130/389 (33.42%), Postives = 209/389 (53.73%), Query Frame = 1
Query:   79 YLLTSILIGFIKCQPNNYIHAEMEGNLDDKRGFNFTLVTRNSSGVILYAVNSERN-FLIKLE---NSRI-IMKYKNYTIEKPLWKICG--FSVNHFWKYFVMLRHLEVQVTCDGKFHSLVFKDIK-KVIYSNYXXXXXXXXXXXXXYIWMGNVGPYTGEGDVVTQPMKNQLYGCLDKFYFHYKLIQMFTKASNFKVCSDNFYNETICYNETSCQKKVTSYKIDDCSLLSMNGIYCLPNYQIYGNLVNSFQRSDQLKKIVNFKLYWKSLLENNFCLLEIK-SRDSTIVIFINQNSQMKMKLPQRNGILL-RNLSIKNKRNIQQFLLVSVTPSELWVKVYSDGDIKVFVTSIKFDPITINVGKSQQSEICRTFQGMIDVQYDPTQFTLDVG 1215
            +LLT+ LI FI     NY ++E +G+L  ++ FNF+L     SG+ LYAV+S  N FLI++E   N +I I+KY        L  +CG  F  +    + V LR LEV   C G    +  +++     ++ YP P++   +++K Y W+GN+G Y G G ++  P+ NQL GCLDKFYF+ + +    K         N +NE++C NETSC     SY I+DC+L S+N  YC     +Y    + ++   + K  +  +L WKS    NFCL++IK  ++  I +++N+ +Q+   +     I++ RNL+ K K      L++    ++  ++  S  +I  F+      P+ + +G      IC+TF+G ID+ YDPTQ +L  G
Sbjct:    4 FLLTNFLISFISA---NYTYSESQGDL--QKEFNFSLFIETFSGITLYAVDSNNNKFLIEMELEENLQIAIIKYNKLFNRVKLENLCGCRFCSHASMAFVVRLRRLEVNAKCKGVDKLIRLENVNGDGQFNGYPLPRKRSNNTNKIYFWIGNIGYYFGLGKILYVPLNNQLTGCLDKFYFNNRFLTFEQKGKMMLNSCPNVFNESVC-NETSCMADQISYGINDCALASVNPRYCRKALPLYSKSKDLYEIKIRAKFPITIRLEWKSFYLKNFCLIDIKMGKNKFITMYLNKMNQISFAISHNRSIVVERNLT-KMKELDNNLLIIIFNVTQFMIRAASANEIYTFIEPFNERPMEMRIGSGGNINICQTFEGAIDIFYDPTQISLRTG 385          
BLAST of SMED30019814 vs. Planmine SMEST
Match: SMESG000050280.1 (SMESG000050280.1)

HSP 1 Score: 191.045 bits (484), Expect = 4.445e-55
Identity = 130/389 (33.42%), Postives = 209/389 (53.73%), Query Frame = 1
Query:   79 YLLTSILIGFIKCQPNNYIHAEMEGNLDDKRGFNFTLVTRNSSGVILYAVNSERN-FLIKLE---NSRI-IMKYKNYTIEKPLWKICG--FSVNHFWKYFVMLRHLEVQVTCDGKFHSLVFKDIK-KVIYSNYXXXXXXXXXXXXXYIWMGNVGPYTGEGDVVTQPMKNQLYGCLDKFYFHYKLIQMFTKASNFKVCSDNFYNETICYNETSCQKKVTSYKIDDCSLLSMNGIYCLPNYQIYGNLVNSFQRSDQLKKIVNFKLYWKSLLENNFCLLEIK-SRDSTIVIFINQNSQMKMKLPQRNGILL-RNLSIKNKRNIQQFLLVSVTPSELWVKVYSDGDIKVFVTSIKFDPITINVGKSQQSEICRTFQGMIDVQYDPTQFTLDVG 1215
            +LLT+ LI FI     NY ++E +G+L  ++ FNF+L     SG+ LYAV+S  N FLI++E   N +I I+KY        L  +CG  F  +    + V LR LEV   C G    +  +++     ++ YP P++   +++K Y W+GN+G Y G G ++  P+ NQL GCLDKFYF+ + +    K         N +NE++C NETSC     SY I+DC+L S+N  YC     +Y    + ++   + K  +  +L WKS    NFCL++IK  ++  I +++N+ +Q+   +     I++ RNL+ K K      L++    ++  ++  S  +I  F+      P+ + +G      IC+TF+G ID+ YDPTQ +L  G
Sbjct:    7 FLLTNFLISFISA---NYTYSESQGDL--QKEFNFSLFIETFSGITLYAVDSNNNKFLIEMELEENLQIAIIKYNKLFNRVKLENLCGCRFCSHASMAFVVRLRRLEVNAKCKGVDKLIRLENVNGDGQFNGYPLPRKRSNNTNKIYFWIGNIGYYFGLGKILYVPLNNQLTGCLDKFYFNNRFLTFEQKGKMMLNSCPNVFNESVC-NETSCMADQISYGINDCALASVNPRYCRKALPLYSKSKDLYEIKIRAKFPITIRLEWKSFYLKNFCLIDIKMGKNKFITMYLNKMNQISFAISHNRSIVVERNLT-KMKELDNNLLIIIFNVTQFMIRAASANEIYTFIEPFNERPMEMRIGSGGNINICQTFEGAIDIFYDPTQISLRTG 388          
BLAST of SMED30019814 vs. Planmine SMEST
Match: SMESG000050503.1 (SMESG000050503.1)

HSP 1 Score: 171.014 bits (432), Expect = 1.192e-47
Identity = 114/374 (30.48%), Postives = 201/374 (53.74%), Query Frame = 1
Query:  121 PNNYIHAEMEGNLDDKRGFNFTLVTRNSSGVILYAVNSERNFLIKLENSR-IIMKYKNYTIEKPLWKICGFSVNH-------FWKYFVMLRHLEVQVTCDGKFHSLVFKDIKKV-IYSNYXXXXXXXXXXXXXYIWMGNVGPYTGEGDVVTQPMKNQLYGCLDKFYFHYKLIQMFTKASNFKVCSDNFYNETICYNETSCQKKVTSYKIDDCSLLSMNGIYCLP---NYQIYGNLVNSFQRSDQLKKIVNFKLYWKSLLENNFCLLEIKSRDSTIVIF-INQNSQMKMKLPQRNGILLRNLSIKNKRNIQQFLLVSVTPSELWVKVYSDGDIKVFVTSIKFDPITINVGKSQQSEICRTFQGMIDVQYDPTQFT 1203
            P  +I  ++ GNL  K  F F+LVT N +G+I Y  +S   FLIKL N   +I+KY+ + +++ + +IC     H       +W++ V+L  ++V + C+ + + ++    ++  I S YP PK +K S  KS++WMGN+   + E  +   P+K+ L GC+DKF+++ K IQ    ++ F     N Y E  C N  +C  K  SY IDDCS  ++N  +C P   N   Y    + +  +++   I+  KL W +L+ + FCL++ K+R+ ++++F +NQN ++ + +    G++ + L +K  +     LLV  T   L VK++ +  I  ++     DP +I  G      IC  F G +++ Y+ +Q +
Sbjct:   21 PAGFISTQLNGNLAQKNRFQFSLVTENLNGIIFYGFDSTDQFLIKLINGENLIIKYQEFLVKRFVKEICTVDPYHSKYPKYFYWEFLVLLEQMKVIIKCNRRENVVILSGPRQYGILSAYPNPKVVKISKMKSFVWMGNIYVNSTEESLCFSPLKDTLIGCMDKFFYNNKQIQFQIYSNKFLPECKNQYREIEC-NHVTCTNKSISYAIDDCSFSALNRRFCWPDDANLPYYSKPKHFYVVNNKPNLIL--KLKWHNLITDIFCLMQFKTRNKSLIVFSLNQNHKIVLDIRTSGGLIKKVLPLKAIKESLNVLLVEFTNRGLIVKIFINDSIMRYIEPFHEDPESIVTGTCDVDNICSQFIGKMELIYNHSQIS 391          
The following BLAST results are available for this feature:
BLAST of SMED30019814 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019814 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000050492.10.000e+098.92SMESG000050492.1[more]
SMESG000050492.10.000e+098.90SMESG000050492.1[more]
SMESG000050280.14.167e-5533.42SMESG000050280.1[more]
SMESG000050280.14.445e-5533.42SMESG000050280.1[more]
SMESG000050503.11.192e-4730.48SMESG000050503.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30019814 ID=SMED30019814|Name=SMED30019814|organism=Schmidtea mediterranea sexual|type=transcript|length=1420bp
TATTAATATATCAGAATTATCATCTATACGAGAGATACCAATCTAATTGC
AATGCTATTCCAGCTATCAACTAACCTATATTTGCTGACTTCAATATTAA
TAGGATTTATTAAATGCCAACCAAACAATTACATTCATGCAGAAATGGAA
GGAAATTTGGACGACAAAAGAGGATTCAATTTCACATTAGTAACGAGAAA
TTCATCTGGAGTAATACTTTATGCGGTAAATTCGGAAAGGAACTTTTTGA
TAAAGCTAGAAAACTCGAGGATTATTATGAAGTACAAAAATTATACAATA
GAGAAACCTTTATGGAAAATTTGCGGCTTTTCTGTGAATCATTTTTGGAA
ATATTTTGTTATGCTCCGACATTTGGAGGTACAAGTCACATGTGACGGGA
AATTTCATTCACTAGTATTTAAAGATATTAAAAAAGTAATCTATTCAAAC
TATCCAAAACCAAAAGAACTCAAAGAAAGCAGCAGTAAAAGTTACATTTG
GATGGGAAACGTGGGCCCTTACACTGGAGAGGGGGACGTTGTCACTCAGC
CAATGAAGAATCAACTTTACGGATGCTTGGATAAATTTTATTTCCATTAT
AAACTAATTCAGATGTTCACCAAAGCGAGCAATTTTAAAGTATGTAGTGA
CAATTTTTACAATGAAACCATTTGCTACAATGAAACTAGTTGCCAAAAAA
AAGTGACTTCATATAAAATTGATGATTGCTCCTTGTTGTCAATGAATGGG
ATATATTGTTTACCAAACTATCAAATTTATGGAAACCTCGTGAATTCTTT
CCAAAGATCTGACCAACTTAAGAAGATTGTCAATTTCAAACTTTACTGGA
AATCACTTCTAGAAAATAATTTTTGTTTACTGGAAATTAAATCTCGGGAT
TCGACCATCGTGATTTTTATAAATCAAAATTCTCAAATGAAGATGAAACT
TCCACAGCGGAATGGAATCCTTCTGCGGAACCTTTCGATAAAAAATAAAC
GGAACATCCAACAGTTTTTATTGGTCAGTGTGACCCCATCTGAGTTGTGG
GTCAAAGTATACAGTGATGGCGACATAAAAGTATTTGTGACCTCAATAAA
GTTTGATCCGATCACAATAAATGTAGGGAAAAGTCAGCAATCTGAAATTT
GTCGAACATTTCAAGGAATGATCGATGTACAATATGACCCTACACAGTTT
ACACTTGACGTTGGCATATTAAAAAAACCTCTTTTTATCAGTGGAATACT
TCTGGTGCTTTTTGTTGGGTTATTGGTAGTTTATTTTCTAAAGGTGAAGA
CGATCAGGTTCAGTTCAATGTCAGAATGCGCATGGAAGTCCCACCTGAAA
TTCAAAAAGACAGACAAAACCTTTAACCGAGAAGACTCTGACAAATATTC
TACAATTTATGATAGCTAAA
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protein sequence of SMED30019814-orf-1

>SMED30019814-orf-1 ID=SMED30019814-orf-1|Name=SMED30019814-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=456bp
MLFQLSTNLYLLTSILIGFIKCQPNNYIHAEMEGNLDDKRGFNFTLVTRN
SSGVILYAVNSERNFLIKLENSRIIMKYKNYTIEKPLWKICGFSVNHFWK
YFVMLRHLEVQVTCDGKFHSLVFKDIKKVIYSNYPKPKELKESSSKSYIW
MGNVGPYTGEGDVVTQPMKNQLYGCLDKFYFHYKLIQMFTKASNFKVCSD
NFYNETICYNETSCQKKVTSYKIDDCSLLSMNGIYCLPNYQIYGNLVNSF
QRSDQLKKIVNFKLYWKSLLENNFCLLEIKSRDSTIVIFINQNSQMKMKL
PQRNGILLRNLSIKNKRNIQQFLLVSVTPSELWVKVYSDGDIKVFVTSIK
FDPITINVGKSQQSEICRTFQGMIDVQYDPTQFTLDVGILKKPLFISGIL
LVLFVGLLVVYFLKVKTIRFSSMSECAWKSHLKFKKTDKTFNREDSDKYS
TIYDS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013320Concanavalin A-like lectin/glucanase domain superfamilySUPERFAMILYSSF49899Concanavalin A-like lectins/glucanasescoord: 48..209
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 404..423