BED-type domain-containing protein

Overview
NameBED-type domain-containing protein
Smed IDSMED30019759
Length (bp)686
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of BED-type domain-containing protein (SMED30019759) t-SNE clustered cells

Violin plots show distribution of expression levels for BED-type domain-containing protein (SMED30019759) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30019759

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymaSMED30019759 dd_Smed_v4_68206_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851])

HSP 1 Score: 74.7146 bits (182), Expect = 5.719e-18
Identity = 58/207 (28.02%), Postives = 98/207 (47.34%), Query Frame = 1 
Query:   10 KPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESII-------CQHWRLLSIP*SAMKLSNKSSTFHCHLIRFLNATEE-------IDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMV-NQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHVLSSISRVKT 585
            +P+E+FE+  S  + Q K++     I   A  ASYK+   +A +K P+  AE+++       C      S      ++   + T    +    N  E+       + K+++LQ+DE   I+    LL ++RF  D  I++ FFF  +L   TT  +++E V N  V   GL++   + VC+DG  S+ G+  E VT +       KT
Sbjct:  790 QPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAKSKTPYTIAETLVKDCIKEVCLEMLGESAAKKVAQVPLSNDTIARRIQELANDMEDQLIEQIKLAKYFSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNKCGLEFKFCVGVCSDGAASMTGKHSEVVTQIKELAPECKT 996

HSP 2 Score: 35.039 bits (79), Expect = 5.719e-18
Identity = 14/35 (40.00%), Postives = 26/35 (74.29%), Query Frame = 2 
Query:  581 KLAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAMDS 685
            +L   +N+++K+VNYIKS  L SR+F+ + + M++
Sbjct: 1014 ELNSVLNDIVKIVNYIKSNSLNSRLFSLLCDNMEA 1048
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851])

HSP 1 Score: 74.7146 bits (182), Expect = 6.377e-18
Identity = 56/198 (28.28%), Postives = 96/198 (48.48%), Query Frame = 1 
Query:   10 KPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESII-------CQHWRLLSIP*SAMKLSNKSSTFHCHLIRFLNATEE-------IDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMV-NQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHV 558
            +P+E+FE+  S  + Q K++     I   A  ASYK+   +A +K P+  AE+++       C      S      ++   + T    +    N  E+       + K+++LQ+DE   I+    LL ++RF  D  I++ FFF  +L   TT  +++E V N  V   GL++   + VC+DG  S+ G+  E VT +
Sbjct:  639 QPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAKSKTPYTIAETLVKDCIKEVCLEMLGESAAKKVAQVPLSNDTIARRIQELANDMEDQLIEQIKLAKYFSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNKCGLEFKFCVGVCSDGAASMTGKHSEVVTQI 836

HSP 2 Score: 34.6538 bits (78), Expect = 6.377e-18
Identity = 14/35 (40.00%), Postives = 26/35 (74.29%), Query Frame = 2 
Query:  581 KLAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAMDS 685
            +L   +N+++K+VNYIKS  L SR+F+ + + M++
Sbjct:  863 ELNSVLNDIVKIVNYIKSNSLNSRLFSLLCDNMEA 897
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Human
Match: ZMYM6 (zinc finger MYM-type containing 6 [Source:HGNC Symbol;Acc:HGNC:13050])

HSP 1 Score: 81.6481 bits (200), Expect = 3.644e-17
Identity = 57/194 (29.38%), Postives = 98/194 (50.52%), Query Frame = 1 
Query:    4 KHKPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESII-------CQHW-------RLLSIP*SAMKLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVID---QKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGR 534
            ++KP ++FE+     + Q+  LK  LL+ +    ASY I    A +KKP + AE +I       C          ++ +IP S + + ++       +   L       KW+ LQ+DES+ IS    LL ++RF ID   + +++   FC  +    T ++IFE++N+ ++S+ L W   + +CTDG  S+ GR
Sbjct:  797 ENKPVDFFEQKSLEMECQNSSLKKCLLVEKSLVKASYLIAFQTAASKKPFSIAEELIKPYLVEMCSEVLGSSAGDKMKTIPLSNVTIQHRIDELSADIEDQLIQKVRESKWFALQIDESSEISNITLLLCYIRF-IDYDCRDVKEELLFCIEMPTQITGFEIFELINKYIDSKSLNWKHCVGLCTDGAASMTGR 989
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Human
Match: ZBED5 (zinc finger BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803])

HSP 1 Score: 62.003 bits (149), Expect = 3.161e-12
Identity = 28/86 (32.56%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  295 WTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVT 552
            ++LQ+DES  +SG A LL F+R+  ++ IE+    C +L+   T  +IF  +N  ++   ++W   + VC+D + ++ G+  E VT
Sbjct:  273 FSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESLQSNATGEEIFNCINSFMQKHEIEWEKCVDVCSDASRAVDGKIAEAVT 358

HSP 2 Score: 28.1054 bits (61), Expect = 3.161e-12
Identity = 10/32 (31.25%), Postives = 21/32 (65.62%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAM 679
            L   +++ ++++NYIK+ P +SR+   + E M
Sbjct:  388 LKNVLDQAVQIINYIKARPHQSRLLKILCEEM 419
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Human
Match: ZBED5 (zinc finger BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803])

HSP 1 Score: 62.003 bits (149), Expect = 3.161e-12
Identity = 28/86 (32.56%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  295 WTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVT 552
            ++LQ+DES  +SG A LL F+R+  ++ IE+    C +L+   T  +IF  +N  ++   ++W   + VC+D + ++ G+  E VT
Sbjct:  273 FSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESLQSNATGEEIFNCINSFMQKHEIEWEKCVDVCSDASRAVDGKIAEAVT 358

HSP 2 Score: 28.1054 bits (61), Expect = 3.161e-12
Identity = 10/32 (31.25%), Postives = 21/32 (65.62%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAM 679
            L   +++ ++++NYIK+ P +SR+   + E M
Sbjct:  388 LKNVLDQAVQIINYIKARPHQSRLLKILCEEM 419
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Zebrafish
Match: AL928808.1 (pep chromosome:GRCz11:20:17257101:17259573:-1 gene:ENSDARG00000101333.2 transcript:ENSDART00000166397.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL928808.1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.633e-6
Identity = 47/192 (24.48%), Postives = 81/192 (42.19%), Query Frame = 1 
Query:   34 LQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAE----------SIICQHWRLLSIP*SAMKLSNKS---------STFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVI-DQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFV 549
            L+   +KQ++  + F    E   +ASY++   +A  KKP+ E E          +I+C     L      ++LS  +         ++   HL+  L   +    ++++ +DES  +  K Q   F+RFV  D  I +       LK+ T   D+ E +   VE   LQ      + TDG  ++ G  +  V
Sbjct:   83 LKGQAEKQTQLFRKFSKHSETVTLASYQLAWNIARAKKPYLEGEFVKKCLSDAVAILCPENENLKRSVKDLQLSRHTVEQRISDIDNSVETHLLSDLQKCQ----YFSIALDESCDVQDKPQFAIFVRFVSEDCTIREELLDIVPLKDRTRGIDLKETLMTVVEKANLQLSKLTAIVTDGAPAMLGSERGLV 270
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505])

HSP 1 Score: 76.6406 bits (187), Expect = 1.154e-15
Identity = 55/200 (27.50%), Postives = 97/200 (48.50%), Query Frame = 1 
Query:    4 KHKPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESIICQHW--------------RLLSIP*SAMKLSNKSSTFHCHLIRFLNATEEI-------DKWWTLQMDESTVISGKAQLLAFLRFVIDQK--IEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGR 534
            ++KP ++FE+     + Q+  LK  LL+ E    ASY I   +A   KP + AE +I  +               ++ +IP     LSN  ST  C + +  +  E+         +W+ LQ+DES+  +    LL ++RF+   +  +++   FC  +   +T  ++FE++N+ ++SR L W   +  CTDG  S+  R
Sbjct:  629 ENKPVDFFEEKSLEMECQNSSLKKCLLVEESLVKASYLIAFQIAARNKPFSIAEELIKPYLVEMCSEVLGSSAGEKMKTIP-----LSN--STIGCRIKKLSDDIEDQLLQKVRESRWFALQVDESSEATEVPLLLCYVRFIDYDRGDVKEELLFCTEMPSPSTDLEVFELINKYIDSRSLNWNHCVGFCTDGAASMTDR 821
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505])

HSP 1 Score: 76.6406 bits (187), Expect = 1.258e-15
Identity = 55/200 (27.50%), Postives = 97/200 (48.50%), Query Frame = 1 
Query:    4 KHKPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESIICQHW--------------RLLSIP*SAMKLSNKSSTFHCHLIRFLNATEEI-------DKWWTLQMDESTVISGKAQLLAFLRFVIDQK--IEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGR 534
            ++KP ++FE+     + Q+  LK  LL+ E    ASY I   +A   KP + AE +I  +               ++ +IP     LSN  ST  C + +  +  E+         +W+ LQ+DES+  +    LL ++RF+   +  +++   FC  +   +T  ++FE++N+ ++SR L W   +  CTDG  S+  R
Sbjct:  721 ENKPVDFFEEKSLEMECQNSSLKKCLLVEESLVKASYLIAFQIAARNKPFSIAEELIKPYLVEMCSEVLGSSAGEKMKTIP-----LSN--STIGCRIKKLSDDIEDQLLQKVRESRWFALQVDESSEATEVPLLLCYVRFIDYDRGDVKEELLFCTEMPSPSTDLEVFELINKYIDSRSLNWNHCVGFCTDGAASMTDR 913
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Mouse
Match: Zbed5 (zinc finger, BED type containing 5 [Source:MGI Symbol;Acc:MGI:1919220])

HSP 1 Score: 57.7658 bits (138), Expect = 1.244e-10
Identity = 28/89 (31.46%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:  298 TLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHVLS 564
            ++Q+DEST ++   QL+ ++R++ D   +  F  C  L+ T T  D+FE V+  +    + W     VCTDG  +  G +  F   VL+
Sbjct:  335 SIQLDESTDVANCLQLMVYVRYINDGDFKDEFLCCKPLERTATALDVFEAVDSFLRQHEISWKSICGVCTDGAPATLGCQSGFQRLVLN 423

HSP 2 Score: 26.5646 bits (57), Expect = 1.244e-10
Identity = 10/31 (32.26%), Postives = 19/31 (61.29%), Query Frame = 2 
Query:  590 KTMNEVIKVVNYIKSCPLRSRIFTKIGEAMD 682
            + M  V+  VN++K+  L SR+F ++   +D
Sbjct:  451 EVMKSVLSSVNFVKASSLNSRLFLQLCSDLD 481
[Close]
BLAST of BED-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q6R2W3|SCND3_HUMAN (SCAN domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZBED9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.380e-17
Identity = 58/207 (28.02%), Postives = 98/207 (47.34%), Query Frame = 1 
Query:   10 KPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESII-------CQHWRLLSIP*SAMKLSNKSSTFHCHLIRFLNATEE-------IDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMV-NQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHVLSSISRVKT 585
            +P+E+FE+  S  + Q K++     I   A  ASYK+   +A +K P+  AE+++       C      S      ++   + T    +    N  E+       + K+++LQ+DE   I+    LL ++RF  D  I++ FFF  +L   TT  +++E V N  V   GL++   + VC+DG  S+ G+  E VT +       KT
Sbjct:  790 QPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAKSKTPYTIAETLVKDCIKEVCLEMLGESAAKKVAQVPLSNDTIARRIQELANDMEDQLIEQIKLAKYFSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNKCGLEFKFCVGVCSDGAASMTGKHSEVVTQIKELAPECKT 996

HSP 2 Score: 35.039 bits (79), Expect = 2.380e-17
Identity = 14/35 (40.00%), Postives = 26/35 (74.29%), Query Frame = 2 
Query:  581 KLAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAMDS 685
            +L   +N+++K+VNYIKS  L SR+F+ + + M++
Sbjct: 1014 ELNSVLNDIVKIVNYIKSNSLNSRLFSLLCDNMEA 1048
[Close]
BLAST of BED-type domain-containing protein vs. UniProt/SwissProt
Match: sp|O95789|ZMYM6_HUMAN (Zinc finger MYM-type protein 6 OS=Homo sapiens OX=9606 GN=ZMYM6 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.750e-16
Identity = 57/194 (29.38%), Postives = 98/194 (50.52%), Query Frame = 1 
Query:    4 KHKPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESII-------CQHW-------RLLSIP*SAMKLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVID---QKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGR 534
            ++KP ++FE+     + Q+  LK  LL+ +    ASY I    A +KKP + AE +I       C          ++ +IP S + + ++       +   L       KW+ LQ+DES+ IS    LL ++RF ID   + +++   FC  +    T ++IFE++N+ ++S+ L W   + +CTDG  S+ GR
Sbjct:  797 ENKPVDFFEQKSLEMECQNSSLKKCLLVEKSLVKASYLIAFQTAASKKPFSIAEELIKPYLVEMCSEVLGSSAGDKMKTIPLSNVTIQHRIDELSADIEDQLIQKVRESKWFALQIDESSEISNITLLLCYIRF-IDYDCRDVKEELLFCIEMPTQITGFEIFELINKYIDSKSLNWKHCVGLCTDGAASMTGR 989
[Close]
BLAST of BED-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q49AG3|ZBED5_HUMAN (Zinc finger BED domain-containing protein 5 OS=Homo sapiens OX=9606 GN=ZBED5 PE=2 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 1.317e-11
Identity = 28/86 (32.56%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  295 WTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVT 552
            ++LQ+DES  +SG A LL F+R+  ++ IE+    C +L+   T  +IF  +N  ++   ++W   + VC+D + ++ G+  E VT
Sbjct:  273 FSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESLQSNATGEEIFNCINSFMQKHEIEWEKCVDVCSDASRAVDGKIAEAVT 358

HSP 2 Score: 28.1054 bits (61), Expect = 1.317e-11
Identity = 10/32 (31.25%), Postives = 21/32 (65.62%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAM 679
            L   +++ ++++NYIK+ P +SR+   + E M
Sbjct:  388 LKNVLDQAVQIINYIKARPHQSRLLKILCEEM 419
[Close]
BLAST of BED-type domain-containing protein vs. UniProt/SwissProt
Match: sp|A4Z944|ZBED5_CANLF (Zinc finger BED domain-containing protein 5 OS=Canis lupus familiaris OX=9615 GN=ZBED5 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.095e-11
Identity = 28/86 (32.56%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  295 WTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVT 552
            ++LQ+DES  +SG A LL F+R+  ++ IE+    C +L+   T  +IF  +N  ++   ++W   + VC+D + ++ G+  E VT
Sbjct:  274 FSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESLQSNATGEEIFNCINSFMQKHEIEWEKCVDVCSDASRAMDGKIAEAVT 359

HSP 2 Score: 28.1054 bits (61), Expect = 2.095e-11
Identity = 10/32 (31.25%), Postives = 21/32 (65.62%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAM 679
            L   +++ ++++NYIK+ P +SR+   + E M
Sbjct:  389 LKNVLDQAVQIINYIKARPHQSRLLKILCEEM 420
[Close]
BLAST of BED-type domain-containing protein vs. UniProt/SwissProt
Match: sp|A4Z943|ZBED5_BOVIN (Zinc finger BED domain-containing protein 5 OS=Bos taurus OX=9913 GN=ZBED5 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.123e-11
Identity = 28/86 (32.56%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  295 WTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVT 552
            ++LQ+DES  +SG A LL F+R+  ++ IE+    C +L+   T  +IF  +N  ++   ++W   + VC+D + ++ G+  E VT
Sbjct:  274 FSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESLQSNATGEEIFNCINSFMQKHEIEWEKCVDVCSDASRAMDGKIAEAVT 359

HSP 2 Score: 27.335 bits (59), Expect = 3.123e-11
Identity = 10/32 (31.25%), Postives = 21/32 (65.62%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAM 679
            L   +++ ++++NYIK+ P +SR+   + E M
Sbjct:  389 LKNVLDQAVQIINYIKARPHQSRLLKILCEEM 420
[Close]
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A0P4VZP1 (DUF4371 domain-containing protein OS=Scylla olivacea OX=85551 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.729e-25
Identity = 68/198 (34.34%), Postives = 105/198 (53.03%), Query Frame = 1 
Query:    7 HKPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESIICQHWRLL--------------SIP*SAMKLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHV 558
            +KPR YFE L +  ++Q   L   + + +KA  ASY +  L+A + KPH  AE++I      +               IP S   +S +       +   + A+ +  + + LQ+DEST I GKAQL AF+R++ + KI   FF C  L+ETTT  DIF  +++ ++S GL W   + +CTDG  ++ G  K FV+ V
Sbjct:  102 NKPRSYFEGLLNEQKQQRVMLSKTVKVSDKAQEASYLVAELVAKSMKPHTIAETLILPACSAIVKTMFGSEAEKQVKKIPVSDSTISRRIHDMSADIEETVCASVKESEMFALQVDESTDIGGKAQLSAFIRYIHNVKIVDQFFCCKELEETTTGNDIFATLSEYIKSVGLSWQSCVGICTDGAPAMIGSIKGFVSLV 299

HSP 2 Score: 35.4242 bits (80), Expect = 3.729e-25
Identity = 14/34 (41.18%), Postives = 26/34 (76.47%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAMDS 685
            L   + +V+K+VN+IKS PL++R+F K+ E +++
Sbjct:  327 LKSVLEKVVKMVNFIKSRPLKTRLFAKLCEEVEA 360
[Close]
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A087U6M3 (SCAN domain-containing protein 3 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_03270 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.921e-25
Identity = 67/199 (33.67%), Postives = 107/199 (53.77%), Query Frame = 1 
Query:    4 KHKPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESIICQHWRLL--------------SIP*SAMKLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHV 558
            ++K  +YF +L+ N +KQ+  ++    + E+A  ASY++  L+A  KK H  AE++I    + +               +P S   +S + +     +   +     I + + LQ+DEST ISG AQLLA +RFV    I ++FFFC  L E TT  +IF + ++ +E  GL+W +   VCTDG  ++ GR K FV+ V
Sbjct:   18 QNKNVDYFVRLRDNMEKQATFMRKTTKVNERALKASYQVAELIAKTKKSHTVAETLILPACKAIVEEMLGPEAAKEIAKVPLSNNTISRRINDMSADIESVVLEKIRISEKFALQLDESTDISGHAQLLANVRFVDGDAIRENFFFCKVLPEKTTGEEIFRVTSEYLEQGGLKWENCTSVCTDGAAAMVGRTKGFVSRV 216

HSP 2 Score: 33.113 bits (74), Expect = 5.921e-25
Identity = 13/32 (40.62%), Postives = 23/32 (71.88%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAM 679
            L   +++V+++VN +KS P++SRIF  + E M
Sbjct:  244 LVHVLDDVVRMVNIVKSRPMKSRIFAALCEEM 275
[Close]
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A087TSW7 (Zinc finger BED domain-containing protein 5 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_03975 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.758e-25
Identity = 67/199 (33.67%), Postives = 107/199 (53.77%), Query Frame = 1 
Query:    4 KHKPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESIICQHWRLL--------------SIP*SAMKLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHV 558
            ++K  +YF +L+ N +KQ+  ++    + E+A  ASY++  L+A  KK H  AE++I    + +               +P S   +S + +     +   +     I + + LQ+DEST ISG AQLLA +RFV    I ++FFFC  L E TT  +IF + ++ +E  GL+W +   VCTDG  ++ GR K FV+ V
Sbjct:   56 QNKNVDYFVRLRDNMEKQATFMRKTTKVNERALKASYQVAELIAKTKKSHTVAETLILPACKAIVEEMLGPEAAKEIAKVPLSNNTISRRINDMSADIESVVLEKIRISEKFALQLDESTDISGHAQLLANVRFVDGDAIRENFFFCKVLPEKTTGEEIFRVTSEYLEQGGLKWENCTSVCTDGAAAMVGRTKGFVSRV 254

HSP 2 Score: 33.113 bits (74), Expect = 6.758e-25
Identity = 13/32 (40.62%), Postives = 23/32 (71.88%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAM 679
            L   +++V+++VN +KS P++SRIF  + E M
Sbjct:  282 LVHVLDDVVRMVNIVKSRPMKSRIFAALCEEM 313
[Close]
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A0L8GU54 (Uncharacterized protein (Fragment) OS=Octopus bimaculoides OX=37653 GN=OCBIM_22027777mg PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.879e-25
Identity = 56/108 (51.85%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:  262 FLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHVLSSISRVKT 585
            F  A  E++  W LQ+DEST I  K QL++FLR V   KI   FFFCC LKE TTR D+F +VNQ V  RG+QW   I VC DG   +QGR++ FV +VL +   VKT
Sbjct:    5 FTLAKHELENLWCLQIDESTDICKKTQLISFLRIVSGGKIISQFFFCCDLKERTTREDVFNLVNQIVVLRGMQWQTCISVCIDGAPPMQGRKQGFVVNVLQTKKIVKT 112
[Close]
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A2S2R655 (Zinc finger BED domain-containing protein 5 (Fragment) OS=Sipha flava OX=143950 GN=ZBED5_36 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.550e-24
Identity = 66/199 (33.17%), Postives = 102/199 (51.26%), Query Frame = 1 
Query:   10 KPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESII---CQHWRLLSIP*SA----MKLSNKSSTFHCHLIRFLNATEEIDK-----------WWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVT 552
            K + YFE+L +N   Q K  K  + I +KA IASYK+  ++A   KPH  AES+I   C     +     A    MK+ +   T      R ++ +++I+K           ++ LQ+DEST ISG A +L F+RF+ + KI   F  C  L E TT  ++F+ ++  ++   + W   + +CTDG  S+ G  K F T
Sbjct:   20 KEKNYFERLLNNQMNQRKHFKKIVTISDKAQIASYKVAEIIAKQLKPHTIAESLILPACSEIVQIMFGDDAKKEIMKIPHSDDTIKN---RIIHMSDDIEKTVTNKLTTNKLYFALQIDESTDISGIAHVLGFVRFIDENKIVNQFLCCKQLTERTTGQNVFDSISSYLDKFNITWDQCVGICTDGAPSMVGSIKGFTT 215

HSP 2 Score: 38.1206 bits (87), Expect = 3.550e-24
Identity = 15/34 (44.12%), Postives = 27/34 (79.41%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAMDS 685
            L   +++++ +VNYIKS PL+SR+F K+ E+M++
Sbjct:  245 LKSVLDKIVSMVNYIKSRPLQSRLFKKLCESMEA 278
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000051422.1 (pep primary_assembly:Astyanax_mexicanus-2.0:15:35461191:35465166:-1 gene:ENSAMXG00000032672.1 transcript:ENSAMXT00000051422.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 79.337 bits (194), Expect = 8.956e-20
Identity = 56/206 (27.18%), Postives = 103/206 (50.00%), Query Frame = 1 
Query:    1 HKHKPREYFEKLQSNTQKQSKKLKVFLLIPE--KA*IASYKITRLLA*NKKPHAEAESII----------------CQHWRLLSIP*SAM--KLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHV 558
            +  KP E+FE      Q + K L++     +  KA  ASY++ +L+A   KPH   ES+I                C+   L+S+  + +  +++  +      LI+ +  +    +++ +Q+DEST I+  + LLAF+R+  +++I +   FC  L   TT   IF+++N  + S G++W   + V TDG  ++ G+R   +  V
Sbjct:  135 YASKPVEFFENKLKEYQSRKKTLELACSGTDNAKAVEASYRVAQLIAKAGKPHTIGESLILPAAKEMVSVMLGEKPCKQLNLISLSDNTVERRINEMAHDVTQQLIKRVRES----RFYAIQLDESTDIANLSNLLAFVRYEHNREIFEDILFCKPLPTKTTAVAIFDVLNAFIVSNGIEWSKCVGVSTDGARAMMGQRSGVIARV 336

HSP 2 Score: 35.8094 bits (81), Expect = 8.956e-20
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 2 
Query:  596 MNEVIKVVNYIKSCPLRSRIFTKIGEAMDS 685
            ++E +K+VN+IKS PL+SR+F  + E M S
Sbjct:  368 LDEAVKIVNFIKSRPLQSRLFRVLCEEMGS 397
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000044261.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000070.1:2279767:2281653:1 gene:ENSAMXG00000037161.1 transcript:ENSAMXT00000044261.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 78.5666 bits (192), Expect = 1.593e-19
Identity = 56/206 (27.18%), Postives = 103/206 (50.00%), Query Frame = 1 
Query:    1 HKHKPREYFEKLQSNTQKQSKKLKVFLLIPE--KA*IASYKITRLLA*NKKPHAEAESII----------------CQHWRLLSIP*SAM--KLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHV 558
            +  KP E+FE      Q + K L++     +  KA  ASY++ +L+A   KPH   ES+I                C+   L+S+  + +  +++  +      LI+ +  +    +++ +Q+DEST I+  + LLAF+R+  +++I +   FC  L   TT   IF+++N  + S G++W   + V TDG  ++ G+R   +  V
Sbjct:   92 YASKPVEFFENKLKEYQSRKKTLELACSGTDHAKAVEASYRVAQLIAKAGKPHTIGESLILPAAKEMVSVMLGEKPCKQLNLISLSDNTVERRINEMAHDVTQQLIKRVRES----RFYAIQLDESTDIANLSNLLAFVRYEHNREIFEDILFCKPLPTKTTAEAIFDVLNALIVSNGIEWSKCVGVSTDGARAMMGQRSGVIASV 293

HSP 2 Score: 35.8094 bits (81), Expect = 1.593e-19
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 2 
Query:  596 MNEVIKVVNYIKSCPLRSRIFTKIGEAMDS 685
            ++E +K+VN+IKS PL+SR+F  + E M S
Sbjct:  325 LDEAVKIVNFIKSRPLQSRLFRVLCEEMAS 354
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000057314.1 (pep primary_assembly:Astyanax_mexicanus-2.0:1:4224188:4227217:-1 gene:ENSAMXG00000029268.1 transcript:ENSAMXT00000057314.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 63.5438 bits (153), Expect = 5.994e-14
Identity = 49/197 (24.87%), Postives = 98/197 (49.75%), Query Frame = 1 
Query:   10 KPREYF-EKLQSNTQKQSKKLKVFLLIP----EKA*IASYKITRLLA*NKKPHAEAESIICQHWRLLSIP*SAMKLSNK-------SSTFHCHLIRFLNATEE--IDKW----WTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEF 546
            KP+E+F  K +     + + +K  LL       +A IAS++ + L+A +KKPH   E++I      ++      +++NK       ++T    + R     E   ++K     +++Q+DE+T ++ +A L+ + +++   ++++       LK TT   DIF  V+  + S  + + + +  CTDG  S+ G+ K F
Sbjct:   59 KPKEFFLRKKELLVANRPQNIKDSLLRAGSDHRQATIASFECSLLIAKDKKPHTIGETLIKPACIKMAERMCGPQVANKFKIVPLSNNTVKDRIDRMAGNVENTLVEKLKTSPFSIQLDETTTVAEEAILIVYAQYIEGTEVKQDILMSVNLKSTTRGEDIFSAVDTYITSHNIPYKNIVACCTDGAASMMGKNKGF 255

HSP 2 Score: 31.9574 bits (71), Expect = 5.994e-14
Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGE 673
            L +T+  V+K+VN+IK+ P+  RIF ++ E
Sbjct:  287 LNETLKTVVKIVNFIKARPVNRRIFAQLCE 316
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000030525.1 (pep primary_assembly:Astyanax_mexicanus-2.0:1:12992682:12994541:1 gene:ENSAMXG00000035573.1 transcript:ENSAMXT00000030525.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 55.4546 bits (132), Expect = 1.144e-8
Identity = 41/157 (26.11%), Postives = 74/157 (47.13%), Query Frame = 1 
Query:  106 ASYKITRLLA*NKKPHAEAE----------SIIC--QHWRLLSIP*SAMKLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQ-KIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRR 537
            ASY ++ ++A   KP  E E          SI+C  +  +  +I  SA  ++ + S     +   L    +    +++ +DEST I+  AQL  ++R V D  ++ +       +   TT  +IF  +   +E+ GL W  ++ + TDG  S+ GR+
Sbjct:  156 ASYVVSEMIAKAGKPFTEGEFVKKCILQAASIVCPEKKGQFSNISLSANTVAERISDLSSDIYDQLCEKAKRFSVYSVALDESTDITDTAQLAIYVRGVDDNFEVTEELLTVIPMHGQTTAQEIFHQLCDAIENAGLPWKRFVGITTDGAPSMTGRK 312
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000037725.1 (pep primary_assembly:Astyanax_mexicanus-2.0:14:29162452:29166863:1 gene:ENSAMXG00000037303.1 transcript:ENSAMXT00000037725.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 52.7582 bits (125), Expect = 1.082e-7
Identity = 45/169 (26.63%), Postives = 76/169 (44.97%), Query Frame = 1 
Query:  103 IASYKITRLLA*NKKPHAEAE----------SIICQH----WRLLSIP*SAMKLS--NKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQ-KIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHV 558
            IASY+I  L+A + +P  + E           +IC      ++ +S+  + ++L   + SS  +C L   +N       +++  +DEST  +  AQL  F+R V    ++ +       L   TT ++IF      VE+  L W     V TDG  S+ G    F+ H+
Sbjct:  288 IASYRIANLVAKSARPFIDGEFVKDCMLEACDVICPEAKDAFKNISLSRTTIQLRIVDLSSNSYCQLQSRINDV----TYFSAALDESTDNTDTAQLSIFIRGVTGTCQVYQELAALVPLYGRTTGFEIFNAFKTAVENLNLPWSKLSAVTTDGALSVVGETNGFIGHL 452
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000040389.1 (pep primary_assembly:ASM223467v1:19:265767:268275:-1 gene:ENSORLG00000025045.1 transcript:ENSORLT00000040389.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 75.8702 bits (185), Expect = 3.507e-19
Identity = 51/198 (25.76%), Postives = 99/198 (50.00%), Query Frame = 1 
Query:    1 HKHKPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESII--------------CQHWRLLSIP*S----AMKLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRK 540
            H  KP E+F++ ++   +QS +      + ++A +ASYK+   +A  KKPH  AE +I                  +L ++P S    A ++++ ++     L+  L      DK + LQ DE+T  +     +A++RF +   + +   FC  +++  T  ++F+M++  +   GL+W + I VC+DG  ++ G +K
Sbjct:   82 HADKPLEFFQRKRAEYCQQSSRFVSATSVNQRALLASYKVAYQIAQCKKPHTIAEELILPAALDMVSVMLDDASAAKLKTVPLSNDTVARRINDIANDLKEQLVEKLK-----DKRFALQFDEATDSNKDCLFIAYVRFDMTHSLCEDLLFCKYVRDRATAEELFKMLDCFLTENGLKWENCIGVCSDGAQTMAGMKK 274

HSP 2 Score: 37.3502 bits (85), Expect = 3.507e-19
Identity = 14/33 (42.42%), Postives = 27/33 (81.82%), Query Frame = 2 
Query:  581 KLAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAM 679
            +L++ M++++ VVN+IK+ PL++R+F+ I E M
Sbjct:  307 ELSEVMSDIVGVVNFIKTRPLKTRVFSAICEEM 339
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000035512.1 (pep primary_assembly:ASM223467v1:11:22712371:22714941:1 gene:ENSORLG00000026495.1 transcript:ENSORLT00000035512.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 75.8702 bits (185), Expect = 3.902e-19
Identity = 51/198 (25.76%), Postives = 99/198 (50.00%), Query Frame = 1 
Query:    1 HKHKPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESII--------------CQHWRLLSIP*S----AMKLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRK 540
            H  KP E+F++ ++   +QS +      + ++A +ASYK+   +A  KKPH  AE +I                  +L ++P S    A ++++ ++     L+  L      DK + LQ DE+T  +     +A++RF +   + +   FC  +++  T  ++F+M++  +   GL+W + I VC+DG  ++ G +K
Sbjct:   82 HADKPLEFFQRKRAEYCQQSSRFVSATSVNQRALLASYKVAYQIAQCKKPHTIAEELILPAALDMVSVMLDDASAAKLKTVPLSNDTVARRINDIANDLKEQLVEKLK-----DKRFALQFDEATDSNKDCLFIAYVRFDMTHSLCEDLLFCKYVRDRATAEELFKMLDCFLTENGLKWENCIGVCSDGAQTMAGMKK 274

HSP 2 Score: 37.3502 bits (85), Expect = 3.902e-19
Identity = 14/33 (42.42%), Postives = 27/33 (81.82%), Query Frame = 2 
Query:  581 KLAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAM 679
            +L++ M++++ VVN+IK+ PL++R+F+ I E M
Sbjct:  307 ELSEVMSDIVGVVNFIKTRPLKTRVFSAICEEM 339
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000030788.1 (pep primary_assembly:ASM223467v1:17:2264135:2274164:1 gene:ENSORLG00000023031.1 transcript:ENSORLT00000030788.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 77.411 bits (189), Expect = 1.536e-18
Identity = 55/194 (28.35%), Postives = 85/194 (43.81%), Query Frame = 1 
Query:    1 HKHKPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESIICQHWRLLSIP*SAMKLSNKSSTFHCHLIRFLNATEEIDKW--------WTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHV 558
            H  K  E+F +  S  +     ++       K   ASY ++ L+A  KKP   AE ++     +L+     M     + TF    +        ID          ++LQ+DEST +SG AQL+AF+R++    I +H  FC  ++  TT  DIF +VN       + W     VCTD   S+ G  K  +  +
Sbjct:   55 HVGKAPEFFRRKLSEFKSSQATMRKVSTTSVKVLEASYAVSLLVAKAKKPFTIAEDLLLPAAVVLA---ETMLDKESADTFKTVPLSNDTVCRRIDTMVVGKLGDSFSLQLDESTDVSGHAQLVAFVRYIDTDDICEHILFCKEMEGRTTGEDIFNVVNMFFTRNAISWKSCSSVCTDAAASMTGSAKGLIARI 245

HSP 2 Score: 33.4982 bits (75), Expect = 1.536e-18
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGE 673
            L   +N+ IKV+N+IKS PL +R+F  + E
Sbjct:  273 LQDVLNDSIKVINFIKSRPLNARLFCNLCE 302
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000002658.2 (pep primary_assembly:ASM223467v1:17:436863:440544:-1 gene:ENSORLG00000002141.2 transcript:ENSORLT00000002658.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 76.6406 bits (187), Expect = 9.454e-18
Identity = 55/177 (31.07%), Postives = 84/177 (47.46%), Query Frame = 1 
Query:    1 HKHKPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESIICQHWRLLSIP*SAMKLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQG 531
            H  K  E+F +  S  +     +        KA  ASY ++ L+A  KKP   AE+       L ++P S   +  +  T    +I       ++   ++LQ+DEST +SG AQL+AF+R++    I +H  FC  ++  TT  DIF +VN  +      W    RVCTD   S+ G
Sbjct:  142 HVGKAPEFFRRKLSEFKSSQATMPKVSTTSAKALEASYAVSLLVAKAKKPFTIAETY---SDTLKTVPLSNDTVCRRIDTMGADIIE--QVVGKLGDSFSLQLDESTYLSGHAQLVAFVRYIDTDDICEHILFCKEMEGRTTGEDIFNVVNMFI-----SWKSCSRVCTDAAASMTG 308

HSP 2 Score: 31.5722 bits (70), Expect = 9.454e-18
Identity = 13/30 (43.33%), Postives = 21/30 (70.00%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGE 673
            L   +N+ IKV+N+I+S PL +R+F  + E
Sbjct:  341 LHDVLNDSIKVLNFIRSRPLNARLFRSLCE 370
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000040762.1 (pep primary_assembly:ASM223467v1:1:8553592:8557739:1 gene:ENSORLG00000022190.1 transcript:ENSORLT00000040762.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 76.2554 bits (186), Expect = 1.086e-17
Identity = 54/200 (27.00%), Postives = 89/200 (44.50%), Query Frame = 1 
Query:    1 HKHKPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESIICQHWRLLS--------------IP*SAMKLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHV 558
            H  K  E+F +  S  +     ++       KA  ASY ++ L+A  KKP   AE ++     +L+              +P S   +  +  T    +I       ++   ++LQ+DEST +SG AQL+AF+R++    I +H  FC  ++  TT  DIF +VN       + W     VCT+   S+ G  K  +  +
Sbjct:  121 HVGKAPEFFRRKLSEFKSSQATMRKVSTTSAKALEASYAVSLLVAKAKKPFTIAEDLLLPAVVVLAETMLDKKSADTFKTVPLSNDTVCRRIDTMGPDIIE--QVVGKLGDSFSLQLDESTDVSGHAQLVAFVRYIDTDDICEHILFCKEMEGRTTGEDIFNVVNMFFTRNAISWKSCSSVCTETAASMTGSAKGLIARI 318

HSP 2 Score: 31.9574 bits (71), Expect = 1.086e-17
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2 
Query:  584 LAKTMNEVIKVVNYIKSCPLRSRIFTKIGE 673
            L   +N  IKV+N+I+S PL +R+F  + E
Sbjct:  346 LHDVLNHSIKVINFIRSRPLNARLFRSLCE 375
[Close]
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000006631.1 (SMESG000006631.1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.157e-20
Identity = 64/203 (31.53%), Postives = 97/203 (47.78%), Query Frame = 1 
Query:   10 KPREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESII----CQHWRLL---SIP*SAMKLSNKSSTFHCHLIRFLNATEEI------DKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRKEFVTHVLSSISRV 579
            K ++YFE+L     K++   +  + + +KA IASYKI +L+   +KPH  AES+I    C+   +L         +K+    +T    +I      E        +  + LQ+DE+T IS KA LL F+RFV + +I      C  L E TT   I+  +N   E   L W   + + TDG  S+ G  K FVT+     S +
Sbjct:   43 KEKDYFERLLKIKNKEATCFQKTVKLYDKAQIASYKIAKLVDMKQKPHTIAESVILLAYCEISNILFGEDAKKEVLKIHVSDNTIQRRIIDMARDIESTLANKLPNINFALQIDETTDISEKAILLGFIRFVNENEIVNELLCCKELSERTTGEAIYNQINSYFEHLNLNWGQCVEISTDGAPSMIGSVKGFVTYAKQQYSEI 245

HSP 2 Score: 31.5722 bits (70), Expect = 1.157e-20
Identity = 14/35 (40.00%), Postives = 23/35 (65.71%), Query Frame = 2 
Query:  581 KLAKTMNEVIKVVNYIKSCPLRSRIFTKIGEAMDS 685
            +L   +  V  +VNYIK+ PL+ RIF ++  AM++
Sbjct:  265 ELKSVLTNVTDMVNYIKTRPLKCRIFKQLCMAMEA 299
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BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000042089.1 (SMESG000042089.1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.527e-20
Identity = 57/165 (34.55%), Postives = 86/165 (52.12%), Query Frame = 1 
Query:   85 IPEKA*IASYKITRLLA*NKKPHAEAESII----CQHWRLL---SIP*SAMKLSNKSSTFHCHLIRFLNATEEI------DKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGRRK 540
            I +KA +AS+K+  +LA   KPH EAE+II    C+  +++         +K+S    T    +       EE           + Q+DEST ISGKA L+AF+RFVI+ KI   F  C  L + TT  DIF+ +   +E+  + W+ Y+ + TDG  ++ G  K
Sbjct:   15 ISDKAQLASFKVAEILALKLKPHTEAETIILPACCKIVKIMFGEDTKSEILKISFSDDTVRGRINNMFCDIEETVAIKLPSALLSFQVDESTDISGKAILMAFVRFVIETKIINQFLCCKELPQHTTGQDIFDTITSYLETFKISWIQYVGIYTDGAPTMIGSIK 179
[Close]
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000024543.1 (SMESG000024543.1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.112e-19
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:  295 WTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDGTTSIQGR 534
            W++Q+DE+T I GK QLL+ LRFV + KI  ++FFC  L++ TT  DIFE+V++N++   L+W D I VC D   +IQG+
Sbjct:  165 WSIQLDENTDIGGKVQLLSVLRFVQEGKIVNNYFFCQELQQITTSVDIFELVDENMKKNNLKWEDCISVCIDEAPAIQGQ 244
[Close]
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000047161.1 (SMESG000047161.1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.954e-18
Identity = 51/150 (34.00%), Postives = 82/150 (54.67%), Query Frame = 1 
Query:   13 PREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESIICQHWRLLS--------------IP*SAMKLSNKSSTFHCHL-IRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALKE 417
            P  YF+ L+S+ Q +SKK K  ++  ++A IASYKI +L+    K HA+AE I+    ++ +              IP S+  +  +          +  +  +++ + W++Q+DEST ISGKAQLL F RFV   KI  ++FFC  L++
Sbjct:   24 PISYFKNLKSSQQSESKKFKKCVVTTDQAQIASYKIAQLIVRKTKSHAKAEEIVFHALKITTGRMMTNDAVEKFKTIPLSSKTIGRRIQDLSDDTEPQLKDCFDDLSRKWSIQLDESTDISGKAQLLLFFRFVQKGKIVNNYFFCQELQQ 173
[Close]
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000021780.1 (SMESG000021780.1)

HSP 1 Score: 69.707 bits (169), Expect = 4.396e-14
Identity = 54/153 (35.29%), Postives = 75/153 (49.02%), Query Frame = 1 
Query:   13 PREYFEKLQSNTQKQSKKLKVFLLIPEKA*IASYKITRLLA*NKKPHAEAESIICQHWRLL--------------SIP*S----AMKLSNKSSTFHCHLIR-FLNATEEIDKWWTLQMDESTVISGKAQLLAFLRFVIDQKIEKHFFFCCALK 414
            PR YFE++ S +QKQ+KKLK +  I   + IAS+KI +LLA  KKP+++ E I+     +                IP S    A K+   S      L    LN  E + K W LQ+DEST IS KAQL+ +  ++        +F  C  K
Sbjct:  105 PRAYFEEIFSKSQKQTKKLKNYRKISINSQIASFKIAQLLARKKKPYSDGEYILLPSLEIAVSSMVNGKAVDLVKQIPLSSDTIARKIQEMSDDIDQQLKEHILNNKEPMLKLWALQIDESTDISNKAQLITYNHYL------SRYFRACQSK 251
The following BLAST results are available for this feature:
BLAST of BED-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ZBED95.719e-1828.02zinc finger BED-type containing 9 [Source:HGNC Sym... [more]
ZBED96.377e-1828.28zinc finger BED-type containing 9 [Source:HGNC Sym... [more]
ZMYM63.644e-1729.38zinc finger MYM-type containing 6 [Source:HGNC Sym... [more]
ZBED53.161e-1232.56zinc finger BED-type containing 5 [Source:HGNC Sym... [more]
ZBED53.161e-1232.56zinc finger BED-type containing 5 [Source:HGNC Sym... [more]
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BLAST of BED-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of BED-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of BED-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
AL928808.15.633e-624.48pep chromosome:GRCz11:20:17257101:17259573:-1 gene... [more]
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BLAST of BED-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of BED-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Zmym61.154e-1527.50zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI... [more]
Zmym61.258e-1527.50zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI... [more]
Zbed51.244e-1031.46zinc finger, BED type containing 5 [Source:MGI Sym... [more]
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BLAST of BED-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q6R2W3|SCND3_HUMAN2.380e-1728.02SCAN domain-containing protein 3 OS=Homo sapiens O... [more]
sp|O95789|ZMYM6_HUMAN1.750e-1629.38Zinc finger MYM-type protein 6 OS=Homo sapiens OX=... [more]
sp|Q49AG3|ZBED5_HUMAN1.317e-1132.56Zinc finger BED domain-containing protein 5 OS=Hom... [more]
sp|A4Z944|ZBED5_CANLF2.095e-1132.56Zinc finger BED domain-containing protein 5 OS=Can... [more]
sp|A4Z943|ZBED5_BOVIN3.123e-1132.56Zinc finger BED domain-containing protein 5 OS=Bos... [more]
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BLAST of BED-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0P4VZP13.729e-2534.34DUF4371 domain-containing protein OS=Scylla olivac... [more]
A0A087U6M35.921e-2533.67SCAN domain-containing protein 3 (Fragment) OS=Ste... [more]
A0A087TSW76.758e-2533.67Zinc finger BED domain-containing protein 5 (Fragm... [more]
A0A0L8GU548.879e-2551.85Uncharacterized protein (Fragment) OS=Octopus bima... [more]
A0A2S2R6553.550e-2433.17Zinc finger BED domain-containing protein 5 (Fragm... [more]
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BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000051422.18.956e-2027.18pep primary_assembly:Astyanax_mexicanus-2.0:15:354... [more]
ENSAMXT00000044261.11.593e-1927.18pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000057314.15.994e-1424.87pep primary_assembly:Astyanax_mexicanus-2.0:1:4224... [more]
ENSAMXT00000030525.11.144e-826.11pep primary_assembly:Astyanax_mexicanus-2.0:1:1299... [more]
ENSAMXT00000037725.11.082e-726.63pep primary_assembly:Astyanax_mexicanus-2.0:14:291... [more]
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BLAST of BED-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of BED-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of BED-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of BED-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000040389.13.507e-1925.76pep primary_assembly:ASM223467v1:19:265767:268275:... [more]
ENSORLT00000035512.13.902e-1925.76pep primary_assembly:ASM223467v1:11:22712371:22714... [more]
ENSORLT00000030788.11.536e-1828.35pep primary_assembly:ASM223467v1:17:2264135:227416... [more]
ENSORLT00000002658.29.454e-1831.07pep primary_assembly:ASM223467v1:17:436863:440544:... [more]
ENSORLT00000040762.11.086e-1727.00pep primary_assembly:ASM223467v1:1:8553592:8557739... [more]
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BLAST of BED-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000006631.11.157e-2031.53SMESG000006631.1[more]
SMESG000042089.11.527e-2034.55SMESG000042089.1[more]
SMESG000024543.11.112e-1948.75SMESG000024543.1[more]
SMESG000047161.11.954e-1834.00SMESG000047161.1[more]
SMESG000021780.14.396e-1435.29SMESG000021780.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30019759 ID=SMED30019759|Name=BED-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=686bp
CACAAGCACAAGCCAAGAGAATACTTTGAGAAGCTTCAATCGAATACACA
AAAACAATCGAAAAAGTTGAAAGTATTTTTGTTGATCCCAGAAAAAGCAT
AAATTGCAAGTTATAAGATTACGAGACTTTTAGCATGAAACAAGAAACCC
CATGCAGAAGCTGAAAGCATTATTTGCCAGCATTGGAGATTGCTGTCGAT
TCCATGATCAGCCATGAAGTTGTCAAACAAGTCAAGCACATTCCATTGTC
ACCTGATACGATTTCTCAATGCAACAGAGGAAATTGACAAGTGGTGGACA
CTACAAATGGATGAAAGTACAGTTATCAGCGGAAAAGCCCAGTTGCTTGC
ATTTCTGCGATTTGTCATAGATCAAAAAATCGAAAAGCATTTTTTCTTTT
GTTGTGCATTGAAGGAAACGACTACAAGATATGATATATTTGAGATGGTG
AACCAAAATGTTGAATCGAGAGGACTGCAATGGCTCGACTATATCAGAGT
TTGCACAGATGGTACGACTTCAATCCAAGGTCGAAGAAAGGAATTTGTGA
CGCATGTTTTGAGTAGTATTTCACGCGTGAAAACTGGCTAAGACTATGAA
TGAAGTTATCAAAGTCGTTAATTATATTAAGTCGTGTCCACTACGTTCCA
GAATTTTCACTAAAATTGGCGAGGCAATGGACTCGG
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protein sequence of SMED30019759-orf-1

>SMED30019759-orf-1 ID=SMED30019759-orf-1|Name=SMED30019759-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=126bp
MKLSNKSSTFHCHLIRFLNATEEIDKWWTLQMDESTVISGKAQLLAFLRF
VIDQKIEKHFFFCCALKETTTRYDIFEMVNQNVESRGLQWLDYIRVCTDG
TTSIQGRRKEFVTHVLSSISRVKTG*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding