Ninein-like protein

Overview
NameNinein-like protein
Smed IDSMED30019752
Length (bp)2582
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Ninein-like protein (SMED30019752) t-SNE clustered cells

Violin plots show distribution of expression levels for Ninein-like protein (SMED30019752) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ninein-like protein (SMED30019752) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ninein-like protein (SMED30019752) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30019752

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
prepharyngeal regionSMED30019752h1SMcG0011484 SmedASXL_012745SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
parapharyngeal regionSMED30019752h1SMcG0011484 SmedASXL_012745SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30019752h1SMcG0011484 Contig13493newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30019752h1SMcG0011484 Contig13493uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
nervous systemSMED30019752h1SMcG0011484 dd_Smed_v4_16759_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30019752h1SMcG0011484 dd_Smed_v4_16759_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30019752h1SMcG0011484 dd_Smed_v4_16759_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30019752h1SMcG0011484 dd_Smed_v4_16759_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Ninein-like protein vs. Ensembl Human
Match: NINL (ninein like [Source:HGNC Symbol;Acc:HGNC:29163])

HSP 1 Score: 100.138 bits (248), Expect = 8.336e-21
Identity = 65/210 (30.95%), Postives = 107/210 (50.95%), Query Frame = 2 
Query:  458 PRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKY---------------------------GNIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQ 1006
            P+K   P  + PE++ +  +W++L VG +G L+  EL  VC  +G+   +++ L+ LF+ +D D DG+VSL EF  GL  +                           G     ++  +S  S   LF+ ID +  GF    +V+ +W   GI NG E+L  L+F+++E VNL  L+ AL+ E++  +  A+  AA+  Y +EL Y + Q
Sbjct:  186 PQKSCSPSFDTPESQ-IRGVWEELGVGSSGHLSEQELAVVCQSVGLQGLEKEELEDLFNKLDQDGDGKVSLEEFQLGLFSHEPALLLESSTRVKPSKAWSHYQVPEESGCHTTTTSSLVSLCSSLRLFSSID-DGSGFAFPDQVLAMWTQEGIQNGREILQSLDFSVDEKVNLLELTWALDNELMTVD-SAVQQAALACYHQELSYQQGQ 392
[Close]
BLAST of Ninein-like protein vs. Ensembl Human
Match: NINL (ninein like [Source:HGNC Symbol;Acc:HGNC:29163])

HSP 1 Score: 99.7525 bits (247), Expect = 1.253e-20
Identity = 65/210 (30.95%), Postives = 107/210 (50.95%), Query Frame = 2 
Query:  458 PRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKY---------------------------GNIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQ 1006
            P+K   P  + PE++ +  +W++L VG +G L+  EL  VC  +G+   +++ L+ LF+ +D D DG+VSL EF  GL  +                           G     ++  +S  S   LF+ ID +  GF    +V+ +W   GI NG E+L  L+F+++E VNL  L+ AL+ E++  +  A+  AA+  Y +EL Y + Q
Sbjct:  186 PQKSCSPSFDTPESQ-IRGVWEELGVGSSGHLSEQELAVVCQSVGLQGLEKEELEDLFNKLDQDGDGKVSLEEFQLGLFSHEPALLLESSTRVKPSKAWSHYQVPEESGCHTTTTSSLVSLCSSLRLFSSID-DGSGFAFPDQVLAMWTQEGIQNGREILQSLDFSVDEKVNLLELTWALDNELMTVD-SAVQQAALACYHQELSYQQGQ 392
[Close]
BLAST of Ninein-like protein vs. Ensembl Human
Match: NIN (ninein [Source:HGNC Symbol;Acc:HGNC:14906])

HSP 1 Score: 62.3882 bits (150), Expect = 4.022e-9
Identity = 44/192 (22.92%), Postives = 92/192 (47.92%), Query Frame = 2 
Query:  500 ESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKK------------YGNIEKXXXXXXXXXXXXXX--------------FTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYF 997
            E ++++ +DL + ++G L   +L  +C   G+   D + L+ +F   + D DG +S+ +F  GL K            Y  +++  ++     S                  F+C+D +  G    +++++ W   GI N  E+L  L+F+++  +NL  L+ ALE E++    ++I  AA+ +++ E+ + 
Sbjct:  185 EKLQEVCEDLGITRDGHLNRKKLVSICEQYGLQNVDGEMLEEVFH--NLDPDGTMSVEDFFYGLFKNGKSLTPSASTPYRQLKRHLSMQSFDESGRRTTTSSAMTSTIGFRVFSCLD-DGMGHASVERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTK-NSIHQAALASFKAEIRHL 372
[Close]
BLAST of Ninein-like protein vs. Ensembl Human
Match: NIN (ninein [Source:HGNC Symbol;Acc:HGNC:14906])

HSP 1 Score: 62.3882 bits (150), Expect = 4.022e-9
Identity = 44/192 (22.92%), Postives = 92/192 (47.92%), Query Frame = 2 
Query:  500 ESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKK------------YGNIEKXXXXXXXXXXXXXX--------------FTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYF 997
            E ++++ +DL + ++G L   +L  +C   G+   D + L+ +F   + D DG +S+ +F  GL K            Y  +++  ++     S                  F+C+D +  G    +++++ W   GI N  E+L  L+F+++  +NL  L+ ALE E++    ++I  AA+ +++ E+ + 
Sbjct:  185 EKLQEVCEDLGITRDGHLNRKKLVSICEQYGLQNVDGEMLEEVFH--NLDPDGTMSVEDFFYGLFKNGKSLTPSASTPYRQLKRHLSMQSFDESGRRTTTSSAMTSTIGFRVFSCLD-DGMGHASVERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTK-NSIHQAALASFKAEIRHL 372
[Close]
BLAST of Ninein-like protein vs. Ensembl Human
Match: NIN (ninein [Source:HGNC Symbol;Acc:HGNC:14906])

HSP 1 Score: 62.3882 bits (150), Expect = 4.169e-9
Identity = 44/192 (22.92%), Postives = 91/192 (47.40%), Query Frame = 2 
Query:  500 ESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKK------------YGNIEKXXXXXXXXXXXXXX--------------FTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYF 997
            E ++++ +DL + ++G L   +L  +C   G+   D + L+ +F   + D DG +S+ +F  GL K            Y  +++  ++     S                  F+C+D    G    +++++ W   GI N  E+L  L+F+++  +NL  L+ ALE E++    ++I  AA+ +++ E+ + 
Sbjct:  185 EKLQEVCEDLGITRDGHLNRKKLVSICEQYGLQNVDGEMLEEVFH--NLDPDGTMSVEDFFYGLFKNGKSLTPSASTPYRQLKRHLSMQSFDESGRRTTTSSAMTSTIGFRVFSCLDDG-MGHASVERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTK-NSIHQAALASFKAEIRHL 372
[Close]
BLAST of Ninein-like protein vs. Ensembl Zebrafish
Match: ninl (ninein-like [Source:ZFIN;Acc:ZDB-GENE-130530-768])

HSP 1 Score: 79.7221 bits (195), Expect = 1.192e-14
Identity = 56/192 (29.17%), Postives = 90/192 (46.88%), Query Frame = 2 
Query:  506 VEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGL------------------KKYGNIEKXXXXXXXXXXXXXXFTCIDPNR--------QGFCEAQKVVELWASGGILNGNEVL--DYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYF 997
            V  +W+DL VG  G L   EL  VC+++G+   + + L +LF  +D D DG+VSL+EF +GL                  K    I K     +  S+   L +     R         G    +KV+ LW   GI N  ++L    L+F++ E + L  L+ AL+ E++    + I  AA+++Y+ E+ Y 
Sbjct:  208 VRAVWEDLGVGAAGSLNREELSLVCDHIGLKHLEAEELDALFRKLDKDQDGKVSLIEFQSGLFKPHDHASPLSTSTPARPKPLRTISKALEERVVRSTSPSLLSATVGQRLLTRLDDGSGCTSPEKVMALWTEEGIHNSRDILQTQTLDFSLEERLCLAELTLALDNELLVSG-NGIHQAALVSYKNEINYL 398
[Close]
BLAST of Ninein-like protein vs. Ensembl Xenopus
Match: saraf (store-operated calcium entry-associated regulatory factor [Source:Xenbase;Acc:XB-GENE-997090])

HSP 1 Score: 96.6709 bits (239), Expect = 9.967e-20
Identity = 56/190 (29.47%), Postives = 91/190 (47.89%), Query Frame = 2 
Query:  506 VEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIEKXXXXXXXXXXXXXXFTCIDP---------------------------NRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYY 994
            V  +W++L VG NG+L   EL  VC  +G+    ++ L+ LF+ +D D DGRVS  EF  GL  +  +     ++ +       + C  P                           +  GF   ++++ +W   GI +G E+L  L+F + E VNL  L+ AL+ E+I    + I LAA+ +Y+ ELY+
Sbjct:  160 VRDIWEELGVGHNGYLNQQELATVCKNIGLKDLSKEELEDLFNKLDRDGDGRVSFQEFQEGLFSHAPV----PISSTPLKHRRPWACFQPMEDSSRMTTTPSLLSAFGGLHLFSSIDDGTGFGSPEQIMIIWEEEGIEDGKEILTSLDFNLGEQVNLLDLTSALDNELIATK-NRIHLAALASYKNELYH 344
[Close]
BLAST of Ninein-like protein vs. Ensembl Xenopus
Match: saraf (store-operated calcium entry-associated regulatory factor [Source:Xenbase;Acc:XB-GENE-997090])

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 56/190 (29.47%), Postives = 91/190 (47.89%), Query Frame = 2 
Query:  506 VEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIEKXXXXXXXXXXXXXXFTCIDP---------------------------NRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYY 994
            V  +W++L VG NG+L   EL  VC  +G+    ++ L+ LF+ +D D DGRVS  EF  GL  +  +     ++ +       + C  P                           +  GF   ++++ +W   GI +G E+L  L+F + E VNL  L+ AL+ E+I    + I LAA+ +Y+ ELY+
Sbjct:  165 VRDIWEELGVGHNGYLNQQELATVCKNIGLKDLSKEELEDLFNKLDRDGDGRVSFQEFQEGLFSHAPV----PISSTPLKHRRPWACFQPMEDSSRMTTTPSLLSAFGGLHLFSSIDDGTGFGSPEQIMIIWEEEGIEDGKEILTSLDFNLGEQVNLLDLTSALDNELIATK-NRIHLAALASYKNELYH 349
[Close]
BLAST of Ninein-like protein vs. Ensembl Xenopus
Match: saraf (store-operated calcium entry-associated regulatory factor [Source:Xenbase;Acc:XB-GENE-997090])

HSP 1 Score: 96.2857 bits (238), Expect = 1.507e-19
Identity = 56/190 (29.47%), Postives = 91/190 (47.89%), Query Frame = 2 
Query:  506 VEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIEKXXXXXXXXXXXXXXFTCIDP---------------------------NRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYY 994
            V  +W++L VG NG+L   EL  VC  +G+    ++ L+ LF+ +D D DGRVS  EF  GL  +  +     ++ +       + C  P                           +  GF   ++++ +W   GI +G E+L  L+F + E VNL  L+ AL+ E+I    + I LAA+ +Y+ ELY+
Sbjct:  160 VRDIWEELGVGHNGYLNQQELATVCKNIGLKDLSKEELEDLFNKLDRDGDGRVSFQEFQEGLFSHAPV----PISSTPLKHRRPWACFQPMEDSSRMTTTPSLLSAFGGLHLFSSIDDGTGFGSPEQIMIIWEEEGIEDGKEILTSLDFNLGEQVNLLDLTSALDNELIATK-NRIHLAALASYKNELYH 344
[Close]
BLAST of Ninein-like protein vs. Ensembl Xenopus
Match: saraf (store-operated calcium entry-associated regulatory factor [Source:Xenbase;Acc:XB-GENE-997090])

HSP 1 Score: 93.9745 bits (232), Expect = 4.692e-19
Identity = 56/190 (29.47%), Postives = 91/190 (47.89%), Query Frame = 2 
Query:  506 VEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIEKXXXXXXXXXXXXXXFTCIDP---------------------------NRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYY 994
            V  +W++L VG NG+L   EL  VC  +G+    ++ L+ LF+ +D D DGRVS  EF  GL  +  +     ++ +       + C  P                           +  GF   ++++ +W   GI +G E+L  L+F + E VNL  L+ AL+ E+I    + I LAA+ +Y+ ELY+
Sbjct:  160 VRDIWEELGVGHNGYLNQQELATVCKNIGLKDLSKEELEDLFNKLDRDGDGRVSFQEFQEGLFSHAPV----PISSTPLKHRRPWACFQPMEDSSRMTTTPSLLSAFGGLHLFSSIDDGTGFGSPEQIMIIWEEEGIEDGKEILTSLDFNLGEQVNLLDLTSALDNELIATK-NRIHLAALASYKNELYH 344
[Close]
BLAST of Ninein-like protein vs. Ensembl Xenopus
Match: saraf (store-operated calcium entry-associated regulatory factor [Source:Xenbase;Acc:XB-GENE-997090])

HSP 1 Score: 89.3521 bits (220), Expect = 2.658e-18
Identity = 60/187 (32.09%), Postives = 93/187 (49.73%), Query Frame = 2 
Query:  506 VEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIE------------------------KXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYY 994
            V  +W++L VG NG+L   EL  VC  +G+    ++ L+ LF+ +D D DGRVS  EF  GL  +  +                           +   LS      LF+ ID +  GF   ++++ +W   GI +G E+L  L+F + E VNL  L+ AL+ E+I    + I LAA+ +Y+ ELY+
Sbjct:  196 VRDIWEELGVGHNGYLNQQELATVCKNIGLKDLSKEELEDLFNKLDRDGDGRVSFQEFQEGLFSHAPVPISSTPLKHRRPWACFQPMEDSSRMTTTPSLLSAFGGLHLFSSID-DGTGFGSPEQIMIIWEEEGIEDGKEILTSLDFNLGEQVNLLDLTSALDNELIATK-NRIHLAALASYKNELYH 380
[Close]
BLAST of Ninein-like protein vs. Ensembl Mouse
Match: Ninl (ninein-like [Source:MGI Symbol;Acc:MGI:1925427])

HSP 1 Score: 107.071 bits (266), Expect = 4.314e-23
Identity = 68/207 (32.85%), Postives = 108/207 (52.17%), Query Frame = 2 
Query:  461 RKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGL-------------------------KKYGNIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQ 1006
            RK   P  + PEN  V+ +W +L +G +G L   EL  VC  +G+++ +++ L+ LFS +D D DGRVSL EF  GL                         ++ G     ++  +S  S   LF+ +D +  GF   ++V+  WA  GI NG E+L  L+F+++E VNL  L+ AL+ E++  +   I  AA+  Y++EL Y + Q
Sbjct:  188 RKSCSPSFSTPEN-LVQGIWHELGIGSSGHLNEQELAVVCRSIGLHSLEKQELEELFSKLDQDGDGRVSLAEFQLGLFGHEPPSLPASSSLIKPNRLWSHYQEESGCHTTTTSSLVSVCSGLRLFSSVD-DGSGFAFPEQVISAWAQEGIQNGREILQSLDFSVDEKVNLLELTWALDNELLTVD-GVIQQAALACYRQELSYHQGQ 391
[Close]
BLAST of Ninein-like protein vs. Ensembl Mouse
Match: Nin (ninein [Source:MGI Symbol;Acc:MGI:105108])

HSP 1 Score: 63.1586 bits (152), Expect = 1.850e-9
Identity = 43/192 (22.40%), Postives = 89/192 (46.35%), Query Frame = 2 
Query:  500 ESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYG--------------------------NIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYF 997
            E ++++ +DL + ++G L   +L  +C   G+   D   L+ +F  +  D DG +S+ +F  GL K G                               ++  ++ +    +F+C+D    G    +++++ W   GI N  E+L  L+F+++  +NL  L+ ALE E++    + I  AA+ +++ E+ + 
Sbjct:  185 EKLQEVCEDLGITRDGHLNRKKLVSICEQYGLQNVDGAMLEEVF--LSLDPDGTMSVEDFFYGLFKTGKSLTPSASTPYRQLKRHLSMQSFDESGRRTATSSAMTSTIGFRVFSCLDDG-MGQASVERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTK-NGIHQAALASFKAEIRHL 372
[Close]
BLAST of Ninein-like protein vs. Ensembl Mouse
Match: Nin (ninein [Source:MGI Symbol;Acc:MGI:105108])

HSP 1 Score: 63.1586 bits (152), Expect = 1.850e-9
Identity = 43/192 (22.40%), Postives = 89/192 (46.35%), Query Frame = 2 
Query:  500 ESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYG--------------------------NIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYF 997
            E ++++ +DL + ++G L   +L  +C   G+   D   L+ +F  +  D DG +S+ +F  GL K G                               ++  ++ +    +F+C+D    G    +++++ W   GI N  E+L  L+F+++  +NL  L+ ALE E++    + I  AA+ +++ E+ + 
Sbjct:  185 EKLQEVCEDLGITRDGHLNRKKLVSICEQYGLQNVDGAMLEEVF--LSLDPDGTMSVEDFFYGLFKTGKSLTPSASTPYRQLKRHLSMQSFDESGRRTATSSAMTSTIGFRVFSCLDDG-MGQASVERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTK-NGIHQAALASFKAEIRHL 372
[Close]
BLAST of Ninein-like protein vs. Ensembl Mouse
Match: Nin (ninein [Source:MGI Symbol;Acc:MGI:105108])

HSP 1 Score: 62.7734 bits (151), Expect = 2.020e-9
Identity = 43/192 (22.40%), Postives = 89/192 (46.35%), Query Frame = 2 
Query:  500 ESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYG--------------------------NIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYF 997
            E ++++ +DL + ++G L   +L  +C   G+   D   L+ +F  +  D DG +S+ +F  GL K G                               ++  ++ +    +F+C+D    G    +++++ W   GI N  E+L  L+F+++  +NL  L+ ALE E++    + I  AA+ +++ E+ + 
Sbjct:  185 EKLQEVCEDLGITRDGHLNRKKLVSICEQYGLQNVDGAMLEEVF--LSLDPDGTMSVEDFFYGLFKTGKSLTPSASTPYRQLKRHLSMQSFDESGRRTATSSAMTSTIGFRVFSCLDDG-MGQASVERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTK-NGIHQAALASFKAEIRHL 372
[Close]
BLAST of Ninein-like protein vs. Ensembl Mouse
Match: Nin (ninein [Source:MGI Symbol;Acc:MGI:105108])

HSP 1 Score: 62.7734 bits (151), Expect = 2.020e-9
Identity = 43/192 (22.40%), Postives = 89/192 (46.35%), Query Frame = 2 
Query:  500 ESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYG--------------------------NIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYF 997
            E ++++ +DL + ++G L   +L  +C   G+   D   L+ +F  +  D DG +S+ +F  GL K G                               ++  ++ +    +F+C+D    G    +++++ W   GI N  E+L  L+F+++  +NL  L+ ALE E++    + I  AA+ +++ E+ + 
Sbjct:  185 EKLQEVCEDLGITRDGHLNRKKLVSICEQYGLQNVDGAMLEEVF--LSLDPDGTMSVEDFFYGLFKTGKSLTPSASTPYRQLKRHLSMQSFDESGRRTATSSAMTSTIGFRVFSCLDDG-MGQASVERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTK-NGIHQAALASFKAEIRHL 372
[Close]
BLAST of Ninein-like protein vs. UniProt/SwissProt
Match: sp|Q6ZQ12|NINL_MOUSE (Ninein-like protein OS=Mus musculus OX=10090 GN=Ninl PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 3.018e-22
Identity = 68/207 (32.85%), Postives = 108/207 (52.17%), Query Frame = 2 
Query:  461 RKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGL-------------------------KKYGNIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQ 1006
            RK   P  + PEN  V+ +W +L +G +G L   EL  VC  +G+++ +++ L+ LFS +D D DGRVSL EF  GL                         ++ G     ++  +S  S   LF+ +D +  GF   ++V+  WA  GI NG E+L  L+F+++E VNL  L+ AL+ E++  +   I  AA+  Y++EL Y + Q
Sbjct:  188 RKSCSPSFSTPEN-LVQGIWHELGIGSSGHLNEQELAVVCRSIGLHSLEKQELEELFSKLDQDGDGRVSLAEFQLGLFGHEPPSLPASSSLIKPNRLWSHYQEESGCHTTTTSSLVSVCSGLRLFSSVD-DGSGFAFPEQVISAWAQEGIQNGREILQSLDFSVDEKVNLLELTWALDNELLTVD-GVIQQAALACYRQELSYHQGQ 391
[Close]
BLAST of Ninein-like protein vs. UniProt/SwissProt
Match: sp|Q9Y2I6|NINL_HUMAN (Ninein-like protein OS=Homo sapiens OX=9606 GN=NINL PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 6.018e-20
Identity = 65/210 (30.95%), Postives = 107/210 (50.95%), Query Frame = 2 
Query:  458 PRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKY---------------------------GNIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQ 1006
            P+K   P  + PE++ +  +W++L VG +G L+  EL  VC  +G+   +++ L+ LF+ +D D DG+VSL EF  GL  +                           G     ++  +S  S   LF+ ID +  GF    +V+ +W   GI NG E+L  L+F+++E VNL  L+ AL+ E++  +  A+  AA+  Y +EL Y + Q
Sbjct:  186 PQKSCSPSFDTPESQ-IRGVWEELGVGSSGHLSEQELAVVCQSVGLQGLEKEELEDLFNKLDQDGDGKVSLEEFQLGLFSHEPALLLESSTRVKPSKAWSHYQVPEESGCHTTTTSSLVSLCSSLRLFSSID-DGSGFAFPDQVLAMWTQEGIQNGREILQSLDFSVDEKVNLLELTWALDNELMTVD-SAVQQAALACYHQELSYQQGQ 392
[Close]
BLAST of Ninein-like protein vs. UniProt/SwissProt
Match: sp|Q61043|NIN_MOUSE (Ninein OS=Mus musculus OX=10090 GN=Nin PE=1 SV=4)

HSP 1 Score: 63.1586 bits (152), Expect = 1.294e-8
Identity = 43/192 (22.40%), Postives = 89/192 (46.35%), Query Frame = 2 
Query:  500 ESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYG--------------------------NIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYF 997
            E ++++ +DL + ++G L   +L  +C   G+   D   L+ +F  +  D DG +S+ +F  GL K G                               ++  ++ +    +F+C+D    G    +++++ W   GI N  E+L  L+F+++  +NL  L+ ALE E++    + I  AA+ +++ E+ + 
Sbjct:  185 EKLQEVCEDLGITRDGHLNRKKLVSICEQYGLQNVDGAMLEEVF--LSLDPDGTMSVEDFFYGLFKTGKSLTPSASTPYRQLKRHLSMQSFDESGRRTATSSAMTSTIGFRVFSCLDDG-MGQASVERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTK-NGIHQAALASFKAEIRHL 372
[Close]
BLAST of Ninein-like protein vs. UniProt/SwissProt
Match: sp|Q8N4C6|NIN_HUMAN (Ninein OS=Homo sapiens OX=9606 GN=NIN PE=1 SV=4)

HSP 1 Score: 62.3882 bits (150), Expect = 2.223e-8
Identity = 44/192 (22.92%), Postives = 91/192 (47.40%), Query Frame = 2 
Query:  500 ESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKK------------YGNIEKXXXXXXXXXXXXXX--------------FTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYF 997
            E ++++ +DL + ++G L   +L  +C   G+   D + L+ +F   + D DG +S+ +F  GL K            Y  +++  ++     S                  F+C+D    G    +++++ W   GI N  E+L  L+F+++  +NL  L+ ALE E++    ++I  AA+ +++ E+ + 
Sbjct:  185 EKLQEVCEDLGITRDGHLNRKKLVSICEQYGLQNVDGEMLEEVFH--NLDPDGTMSVEDFFYGLFKNGKSLTPSASTPYRQLKRHLSMQSFDESGRRTTTSSAMTSTIGFRVFSCLDDG-MGHASVERILDTWQEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTK-NSIHQAALASFKAEIRHL 372
[Close]
BLAST of Ninein-like protein vs. TrEMBL
Match: R7V1Z0 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_201605 PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.311e-25
Identity = 68/191 (35.60%), Postives = 109/191 (57.07%), Query Frame = 2 
Query:  494 ENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGN-------------------IEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIIN-ENLDAITLAAIITYQKELYYFRNQ 1006
            E+E + ++W+ L VG+NG L++ EL  VC ++GM     + LK LF  +D + DG+V L EF  GL ++G+                   +   ++        +GLF+ +DP   GF +   ++ELW S GI +G ++L+YL+F+++  VNL+ALSKAL  EI + E  +A+  AAI++Y+ EL   R Q
Sbjct:  161 ESEHLREVWRQLGVGQNGALSIEELAIVCEHIGMEQMSDQELKQLFDKLDVNRDGKVGLQEFLNGLFQHGSSTAPSPKQPISNHQQKPQTVRTDASSTDVLDIDAGLFSTLDPEGIGFAKPALIIELWESLGISHGGDILEYLQFSLSSIVNLSALSKALHHEIHHVEGDNAVYQAAIVSYENELRCLRAQ 351
[Close]
BLAST of Ninein-like protein vs. TrEMBL
Match: S9WEH8 (Ninein-like protein OS=Camelus ferus OX=419612 GN=CB1_001350002 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.849e-22
Identity = 71/208 (34.13%), Postives = 109/208 (52.40%), Query Frame = 2 
Query:  458 PRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKY-------------------------GNIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQ 1006
            PRK   P ++ PE+  V  +W+ L VG++G LT  EL  VC  +G+    ++ L+ LFS +D D DGRVSL EF  GL ++                         G  +  ++  +S  S   LF  +D +  GF   +++V LWA  G+ NG EVL  L+F+++E VNL  L+ ALE E++  +  A   AA+  Y++EL + + Q
Sbjct:  187 PRKSGSPSLDTPESR-VRDIWEALGVGRSGHLTEQELAVVCQSVGLQGLGKEELEDLFSKLDRDGDGRVSLEEFQLGLCEHRSPALPESSPVNLSGSWSRYQVPEEGGGQTTTSSLVSVCSGPRLFCSVD-DGSGFASPEQIVALWAQEGVHNGREVLQSLDFSVDEKVNLLELTWALENELMMVD-GAAQQAALACYRQELSFCQGQ 391
[Close]
BLAST of Ninein-like protein vs. TrEMBL
Match: A0A1U8C4V0 (ninein-like protein OS=Mesocricetus auratus OX=10036 GN=Ninl PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.448e-21
Identity = 71/208 (34.13%), Postives = 108/208 (51.92%), Query Frame = 2 
Query:  458 PRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKY-------------------------GNIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQ 1006
            PRK   P  N PEN+ V+ +W +L VG +G L   EL  VC  +G++  +++ L+ LFS +D D DGRVSL EF  GL  +                         G     ++  +S  S   LF+ +D +  GF   ++V+  WA  GI NG E+L  L+F+++E VNL  L+ AL+ E++  +   I  AA+  Y++EL Y + Q
Sbjct:  187 PRKSCSPSFNTPENQ-VQSIWHELGVGSSGHLNEQELAVVCRSIGLHGLEKQELEELFSKLDQDGDGRVSLEEFQLGLFGHELPSLPESSSLVKPNRPWSHYQEENGCHTTTTSSLVSVCSGLRLFSSVD-DGSGFAFPEQVISTWAQEGIQNGREILQSLDFSVDEKVNLLELTWALDNELLTVD-GVIQQAALACYRQELNYHQGQ 391
[Close]
BLAST of Ninein-like protein vs. TrEMBL
Match: D4A5N1 (Ninein-like OS=Rattus norvegicus OX=10116 GN=Ninl PE=4 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-20
Identity = 70/208 (33.65%), Postives = 108/208 (51.92%), Query Frame = 2 
Query:  458 PRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGL-------------------------KKYGNIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQ 1006
            PRK   P  N PEN+ V+ +W +L VG +G L   EL  VC  +G++  +++ L+ LFS +D D DGRVSL EF  GL                         ++ G     ++  +S  S   LF+ +D +  GF   ++V+  WA  GI NG E+L  L+F ++E VNL  L+ AL+ E++  +   I  AA+  Y++EL + + Q
Sbjct:  187 PRKSCSPSFNTPENQ-VQGIWHELGVGSSGHLNEQELAVVCRSIGLHGLEKQELEELFSKLDRDGDGRVSLAEFQLGLFGHEPPSLPASSSLIKPNGPWSHYQEESGCHTTTTSSLVSVCSGLRLFSSVD-DGSGFAFPEQVISAWAQEGIQNGREILQSLDFNVDEKVNLLELTWALDNELLTVD-GVIQQAALACYRQELNFHQGQ 391
[Close]
BLAST of Ninein-like protein vs. TrEMBL
Match: A0A267GSZ4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig016654g1 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.013e-19
Identity = 63/205 (30.73%), Postives = 94/205 (45.85%), Query Frame = 2 
Query:  494 ENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYG------------------------------------NIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFR 1000
            E E +  +WQ+L VG++GFLT+ EL +VC Y+GM+      L  LF  +D D DG VS  EF  GL ++                                     N  + S  + +  +   LF+ ID +  G+     +     + G+LNG E+L +L+F  N  VNL  L+ AL+ E+     D +T A I+ YQ EL + R
Sbjct:  106 EEEYLRSIWQELGVGRSGFLTLPELARVCEYIGMDDLTDSHLYQLFENLDEDGDGHVSFNEFVRGLFRHTPNPSVSGPAAGTAAGVGGSPRPPSRGGGGVGGGPTGNQIRRSRSSGTPGNTGTLFSSIDKDGTGYARGADICRFLTAHGLLNGEEILKFLQFDANSRVNLAELTYALDTELAGVT-DGVTQAGILAYQAELRHSR 309
[Close]
BLAST of Ninein-like protein vs. Ensembl Cavefish
Match: ninl (ninein like [Source:NCBI gene;Acc:103026678])

HSP 1 Score: 88.9669 bits (219), Expect = 1.412e-17
Identity = 54/191 (28.27%), Postives = 93/191 (48.69%), Query Frame = 2 
Query:  506 VEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNI-EKXXXXXXXXXXXXXXFTCIDPNR-------------------------QGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFR 1000
            V+ +W++L VG  G L   EL  VC+++G+     + L +LF  +D D DG+VSL EF  GL ++G++ E  +      +S    F+     R                          G    ++VV LW   GI N  ++L  L+F++ E ++L  L+ AL+ E++    + I  AA+I+Y+ E+ + +
Sbjct:  211 VKAVWEELGVGSGGSLDRQELSLVCDHIGLKNLQSEELDALFKKLDKDQDGKVSLTEFQKGLFRHGDLPEPTAASTPLRASTQRTFSQALEERVGRSTSPSLLSATVGQRLLTRLDDGSGCTSPERVVTLWNDEGIRNSRDILQTLDFSLEERLSLAELTLALDNELLVSG-NGIHQAALISYKDEIQFLQ 400
[Close]
BLAST of Ninein-like protein vs. Ensembl Cavefish
Match: ninl (ninein like [Source:NCBI gene;Acc:103026678])

HSP 1 Score: 88.5817 bits (218), Expect = 1.622e-17
Identity = 54/191 (28.27%), Postives = 93/191 (48.69%), Query Frame = 2 
Query:  506 VEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNI-EKXXXXXXXXXXXXXXFTCIDPNR-------------------------QGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFR 1000
            V+ +W++L VG  G L   EL  VC+++G+     + L +LF  +D D DG+VSL EF  GL ++G++ E  +      +S    F+     R                          G    ++VV LW   GI N  ++L  L+F++ E ++L  L+ AL+ E++    + I  AA+I+Y+ E+ + +
Sbjct:  211 VKAVWEELGVGSGGSLDRQELSLVCDHIGLKNLQSEELDALFKKLDKDQDGKVSLTEFQKGLFRHGDLPEPTAASTPLRASTQRTFSQALEERVGRSTSPSLLSATVGQRLLTRLDDGSGCTSPERVVTLWNDEGIRNSRDILQTLDFSLEERLSLAELTLALDNELLVSG-NGIHQAALISYKDEIQFLQ 400
[Close]
BLAST of Ninein-like protein vs. Planmine SMEST
Match: SMESG000041298.1 (SMESG000041298.1)

HSP 1 Score: 1357.81 bits (3513), Expect = 0.000e+0
Identity = 790/790 (100.00%), Postives = 790/790 (100.00%), Query Frame = 2 
Query:  143 MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINKPSNEIELKKEVPPKPRKGLVKQLADVHHXXXXXXXXXXXXXXXXXXXIKIAPNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIEKXXXXXXXXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAHQQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQIEELDAVAELHRKMELELKIYRDNKNQDSQSIQIDKEIERSLFLSTNTIKNLEKDLSLRIHECEILTKTMENQKQIIENQQKAIEILSIESTDEKKQIKIEPGNEELCDIAXXXXXXXXXXXXXXXXXSLNAKIEIAINRERQYQIKLREMEVTAKDFRVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLEKENTFLLKSIQSLEEERENEKRDFFFEKENLRKSCHSLGSQLSKSHLMQTQLESSIMEIQSKSSIIRKLEEANDRLAISVRNALSKIELLSRSDVEMNPKQLIKENLQIQKENILLEDQINQLKRKVDITGTSQQLQDLNKQIDGLQFEIKKKNIKIDELEENLRKLQRGXXXXXXXXXXXXXXFDHLQFKYDELRKKYETQMAQVEKTDSLLKELYETNTNLLKSLKRMEELKDKSDLTVIQLEE 2512
            MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINKPSNEIELKKEVPPKPRKGLVKQLADVHHESLEIEENSNNNNSKPVEEIKIAPNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIEKISNLNLSGSSISGLFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAHQQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQIEELDAVAELHRKMELELKIYRDNKNQDSQSIQIDKEIERSLFLSTNTIKNLEKDLSLRIHECEILTKTMENQKQIIENQQKAIEILSIESTDEKKQIKIEPGNEELCDIALMKNLQLENNNLKQKIKSLNAKIEIAINRERQYQIKLREMEVTAKDFRVTEENLNKNLNELSKENNEKKKKINFFSEKIDDLEKENTFLLKSIQSLEEERENEKRDFFFEKENLRKSCHSLGSQLSKSHLMQTQLESSIMEIQSKSSIIRKLEEANDRLAISVRNALSKIELLSRSDVEMNPKQLIKENLQIQKENILLEDQINQLKRKVDITGTSQQLQDLNKQIDGLQFEIKKKNIKIDELEENLRKLQRGSPNSSSSQKKSFRKFDHLQFKYDELRKKYETQMAQVEKTDSLLKELYETNTNLLKSLKRMEELKDKSDLTVIQLEE
Sbjct:    1 MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINKPSNEIELKKEVPPKPRKGLVKQLADVHHESLEIEENSNNNNSKPVEEIKIAPNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIEKISNLNLSGSSISGLFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAHQQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQIEELDAVAELHRKMELELKIYRDNKNQDSQSIQIDKEIERSLFLSTNTIKNLEKDLSLRIHECEILTKTMENQKQIIENQQKAIEILSIESTDEKKQIKIEPGNEELCDIALMKNLQLENNNLKQKIKSLNAKIEIAINRERQYQIKLREMEVTAKDFRVTEENLNKNLNELSKENNEKKKKINFFSEKIDDLEKENTFLLKSIQSLEEERENEKRDFFFEKENLRKSCHSLGSQLSKSHLMQTQLESSIMEIQSKSSIIRKLEEANDRLAISVRNALSKIELLSRSDVEMNPKQLIKENLQIQKENILLEDQINQLKRKVDITGTSQQLQDLNKQIDGLQFEIKKKNIKIDELEENLRKLQRGSPNSSSSQKKSFRKFDHLQFKYDELRKKYETQMAQVEKTDSLLKELYETNTNLLKSLKRMEELKDKSDLTVIQLEE 790
[Close]
BLAST of Ninein-like protein vs. Planmine SMEST
Match: SMESG000041298.1 (SMESG000041298.1)

HSP 1 Score: 1352.04 bits (3498), Expect = 0.000e+0
Identity = 779/792 (98.36%), Postives = 780/792 (98.48%), Query Frame = 2 
Query:  143 MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINKPSNEIELKKEVPPKPRKGLVKQLADVHHXXXXXXXXXXXXXXXXXXXIKIAPNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIEKXXXXXXXXXXXXXX--FTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAHQQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQIEELDAVAELHRKMELELKIYRDNKNQDSQSIQIDKEIERSLFLSTNTIKNLEKDLSLRIHECEILTKTMENQKQIIENQQKAIEILSIESTDEKKQIKIEPGNEELCDIAXXXXXXXXXXXXXXXXXSLNAKIEIAINRERQYQIKLREMEVTAKDFRVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLEKENTFLLKSIQSLEEERENEKRDFFFEKENLRKSCHSLGSQLSKSHLMQTQLESSIMEIQSKSSIIRKLEEANDRLAISVRNALSKIELLSRSDVEMNPKQLIKENLQIQKENILLEDQINQLKRKVDITGTSQQLQDLNKQIDGLQFEIKKKNIKIDELEENLRKLQRGXXXXXXXXXXXXXXFDHLQFKYDELRKKYETQMAQVEKTDSLLKELYETNTNLLKSLKRMEELKDKSDLTVIQLEE 2512
            MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINKPSNEIELKKEVPPKPRKGLVKQLADVHHESLEIEENSNNNNSKPVEEIKIAPNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIE     NL+ S  S    FTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAHQQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQIEELDAVAELHRKMELELKIYRDNKNQDSQSIQIDKEIERSLFLSTNTIKNLEKDLSLRIHECEILTKTMENQKQIIENQQKAIEILSIESTDEKKQIKIEPGNEELCDIALMKNLQLENNNLKQKIKSLNAKIEIAINRERQYQIKLREMEVTAKDFRVTEENLNKNLNELSKENNEKKKKINFFSEKIDDLEKENTFLLKSIQSLEEERENEKRDFFFEKENLRKSCHSLGSQLSKSHLMQTQLESSIMEIQSKSSIIRKLEEANDRLAISVRNALSKIELLSRSDVEMNPKQLIKENLQIQKENILLEDQINQLKRKVDITGTSQQLQDLNKQIDGLQFEIKKKNIKIDELEENLRKLQRGSPNSSSSQKKSFRKFDHLQFKYDELRKKYETQMAQVEKTDSLLKELYETNTNLLKSLKRMEELKDKSDLTVIQLEE
Sbjct:    1 MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINKPSNEIELKKEVPPKPRKGLVKQLADVHHESLEIEENSNNNNSKPVEEIKIAPNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIENSEISNLNLSGSSISGLFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAHQQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQIEELDAVAELHRKMELELKIYRDNKNQDSQSIQIDKEIERSLFLSTNTIKNLEKDLSLRIHECEILTKTMENQKQIIENQQKAIEILSIESTDEKKQIKIEPGNEELCDIALMKNLQLENNNLKQKIKSLNAKIEIAINRERQYQIKLREMEVTAKDFRVTEENLNKNLNELSKENNEKKKKINFFSEKIDDLEKENTFLLKSIQSLEEERENEKRDFFFEKENLRKSCHSLGSQLSKSHLMQTQLESSIMEIQSKSSIIRKLEEANDRLAISVRNALSKIELLSRSDVEMNPKQLIKENLQIQKENILLEDQINQLKRKVDITGTSQQLQDLNKQIDGLQFEIKKKNIKIDELEENLRKLQRGSPNSSSSQKKSFRKFDHLQFKYDELRKKYETQMAQVEKTDSLLKELYETNTNLLKSLKRMEELKDKSDLTVIQLEE 792
[Close]
BLAST of Ninein-like protein vs. Planmine SMEST
Match: SMESG000041298.1 (SMESG000041298.1)

HSP 1 Score: 1045.03 bits (2701), Expect = 0.000e+0
Identity = 604/617 (97.89%), Postives = 605/617 (98.06%), Query Frame = 2 
Query:  143 MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINKPSNEIELKKEVPPKPRKGLVKQLADVHHXXXXXXXXXXXXXXXXXXXIKIAPNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIEKXXXXXXXXXXXXXX--FTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAHQQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQIEELDAVAELHRKMELELKIYRDNKNQDSQSIQIDKEIERSLFLSTNTIKNLEKDLSLRIHECEILTKTMENQKQIIENQQKAIEILSIESTDEKKQIKIEPGNEELCDIAXXXXXXXXXXXXXXXXXSLNAKIEIAINRERQYQIKLREMEVTAKDFRVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLEKENTFLLKSIQSLEEERENEKRDFFFEKENLRKSCHSLGSQLSKSHLMQTQLESSIMEIQSKSSIIRKLEE 1987
            MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINKPSNEIELKKEVPPKPRKGLVKQLADVHHESLEIEENSNNNNSKPVEEIKIAPNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIE     NL+ S  S    FTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAHQQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQIEELDAVAELHRKMELELKIYRDNKNQDSQSIQIDKEIERSLFLSTNTIKNLEKDLSLRIHECEILTKTMENQKQIIENQQKAIEILSIESTDEKKQIKIEPGNEELCDIALMKNLQLENNNLKQKIKSLNAKIEIAINRERQYQIKLREMEVTAKDFRVTEENLNKNLNELSKENNEKKKKINFFSEKIDDLEKENTFLLKSIQSLEEERENEKRDFFFEKENLRKSCHSLGSQLSKSHLMQTQLESSIMEIQSKSSIIRKLEE
Sbjct:    1 MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINKPSNEIELKKEVPPKPRKGLVKQLADVHHESLEIEENSNNNNSKPVEEIKIAPNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIENSEISNLNLSGSSISGLFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAHQQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQIEELDAVAELHRKMELELKIYRDNKNQDSQSIQIDKEIERSLFLSTNTIKNLEKDLSLRIHECEILTKTMENQKQIIENQQKAIEILSIESTDEKKQIKIEPGNEELCDIALMKNLQLENNNLKQKIKSLNAKIEIAINRERQYQIKLREMEVTAKDFRVTEENLNKNLNELSKENNEKKKKINFFSEKIDDLEKENTFLLKSIQSLEEERENEKRDFFFEKENLRKSCHSLGSQLSKSHLMQTQLESSIMEIQSKSSIIRKLEE 617
[Close]
BLAST of Ninein-like protein vs. Planmine SMEST
Match: SMESG000041298.1 (SMESG000041298.1)

HSP 1 Score: 680.633 bits (1755), Expect = 0.000e+0
Identity = 370/377 (98.14%), Postives = 370/377 (98.14%), Query Frame = 2 
Query:  143 MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINKPSNEIELKKEVPPKPRKGLVKQLADVHHXXXXXXXXXXXXXXXXXXXIKIAPNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIEKXXXXXX--XXXXXXXXFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAHQQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQIEELDAVAELHRKMELELKIYRDNK 1267
            MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINKPSNEIELKKEVPPKPRKGLVKQLADVHHESLEIEENSNNNNSKPVEEIKIAPNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIE     NL  SGSSISGLFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAHQQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQIEELDAVAELHRKMELELKIYRDNK
Sbjct:    1 MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINKPSNEIELKKEVPPKPRKGLVKQLADVHHESLEIEENSNNNNSKPVEEIKIAPNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLGMNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIENSEISNLNLSGSSISGLFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVNLNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAHQQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQIEELDAVAELHRKMELELKIYRDNK 377
The following BLAST results are available for this feature:
BLAST of Ninein-like protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
NINL8.336e-2130.95ninein like [Source:HGNC Symbol;Acc:HGNC:29163][more]
NINL1.253e-2030.95ninein like [Source:HGNC Symbol;Acc:HGNC:29163][more]
NIN4.022e-922.92ninein [Source:HGNC Symbol;Acc:HGNC:14906][more]
NIN4.022e-922.92ninein [Source:HGNC Symbol;Acc:HGNC:14906][more]
NIN4.169e-922.92ninein [Source:HGNC Symbol;Acc:HGNC:14906][more]
back to top
BLAST of Ninein-like protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ninein-like protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ninein-like protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ninl1.192e-1429.17ninein-like [Source:ZFIN;Acc:ZDB-GENE-130530-768][more]
back to top
BLAST of Ninein-like protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
saraf9.967e-2029.47store-operated calcium entry-associated regulatory... [more]
saraf1.313e-1929.47store-operated calcium entry-associated regulatory... [more]
saraf1.507e-1929.47store-operated calcium entry-associated regulatory... [more]
saraf4.692e-1929.47store-operated calcium entry-associated regulatory... [more]
saraf2.658e-1832.09store-operated calcium entry-associated regulatory... [more]
back to top
BLAST of Ninein-like protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Ninl4.314e-2332.85ninein-like [Source:MGI Symbol;Acc:MGI:1925427][more]
Nin1.850e-922.40ninein [Source:MGI Symbol;Acc:MGI:105108][more]
Nin1.850e-922.40ninein [Source:MGI Symbol;Acc:MGI:105108][more]
Nin2.020e-922.40ninein [Source:MGI Symbol;Acc:MGI:105108][more]
Nin2.020e-922.40ninein [Source:MGI Symbol;Acc:MGI:105108][more]
back to top
BLAST of Ninein-like protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 4
Match NameE-valueIdentityDescription
sp|Q6ZQ12|NINL_MOUSE3.018e-2232.85Ninein-like protein OS=Mus musculus OX=10090 GN=Ni... [more]
sp|Q9Y2I6|NINL_HUMAN6.018e-2030.95Ninein-like protein OS=Homo sapiens OX=9606 GN=NIN... [more]
sp|Q61043|NIN_MOUSE1.294e-822.40Ninein OS=Mus musculus OX=10090 GN=Nin PE=1 SV=4[more]
sp|Q8N4C6|NIN_HUMAN2.223e-822.92Ninein OS=Homo sapiens OX=9606 GN=NIN PE=1 SV=4[more]
back to top
BLAST of Ninein-like protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
R7V1Z01.311e-2535.60Uncharacterized protein OS=Capitella teleta OX=283... [more]
S9WEH89.849e-2234.13Ninein-like protein OS=Camelus ferus OX=419612 GN=... [more]
A0A1U8C4V03.448e-2134.13ninein-like protein OS=Mesocricetus auratus OX=100... [more]
D4A5N11.207e-2033.65Ninein-like OS=Rattus norvegicus OX=10116 GN=Ninl ... [more]
A0A267GSZ41.013e-1930.73Uncharacterized protein OS=Macrostomum lignano OX=... [more]
back to top
BLAST of Ninein-like protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ninl1.412e-1728.27ninein like [Source:NCBI gene;Acc:103026678][more]
ninl1.622e-1728.27ninein like [Source:NCBI gene;Acc:103026678][more]
back to top
BLAST of Ninein-like protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ninein-like protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ninein-like protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ninein-like protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Ninein-like protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000041298.10.000e+0100.00SMESG000041298.1[more]
SMESG000041298.10.000e+098.36SMESG000041298.1[more]
SMESG000041298.10.000e+097.89SMESG000041298.1[more]
SMESG000041298.10.000e+098.14SMESG000041298.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30019752 ID=SMED30019752|Name=Ninein-like protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2582bp
ACACACTAATTGTACACACAAACTCGGGATTGTGAATTTGCATACAATTC
CTATTTACAATTCCAAACAATCAATCAAAACAATACGTGAGTAATTCTTT
TTTTATCGATCAAAATGTCTTCAGTTTTTTTTAATTAAATAAATGGACGC
ACTGAATAAATTTTTGGAAAATCTCAAACCTGGCGGAGCTAGCAACTTAC
CGAAAAGTAAATTTGAACAGACATTAACCGATGACTCGGAAGTCGATTCT
CCTGAACCTCAAGAACCAACAATCAAAACAGACATCAATAAACCATCAAA
TGAAATAGAATTAAAAAAAGAAGTGCCTCCAAAACCCAGAAAGGGATTAG
TTAAACAACTTGCTGACGTTCATCACGAATCATTAGAAATTGAAGAAAAT
AGTAATAATAATAATTCAAAGCCAGTAGAAGAGATTAAGATTGCTCCAAA
TCCTTTACCAAGAAAAAAGAAAATTCCAAAAATTAATGAACCGGAAAATG
AAAGTGTTGAAAAATTATGGCAAGATCTAAATGTTGGTAAAAACGGATTT
CTAACAGTTACTGAGTTGGAAAAAGTCTGCAACTACCTAGGAATGAATAC
TCCGGATCAAAAAAGTCTGAAATCCCTTTTCAGCGTAATCGACACCGATT
CCGACGGGCGCGTATCCTTAGTTGAGTTTGCCGCCGGACTTAAAAAATAT
GGAAATATTGAAAAAATATCGAATTTAAATCTGTCTGGGAGCAGCATAAG
TGGTCTTTTCACCTGTATTGATCCTAATAGACAAGGATTTTGTGAGGCAC
AAAAGGTTGTGGAATTGTGGGCTTCTGGTGGAATTTTGAATGGAAATGAA
GTTCTTGACTATTTGGAGTTTACGATAAATGAGCCGGTTAATCTAAACGC
TTTATCTAAAGCTTTGGAACAAGAAATAATAAATGAAAATTTAGACGCAA
TTACTCTTGCAGCAATCATAACTTATCAGAAGGAGCTTTATTACTTCAGA
AATCAGCAAATTGAAAATCCAGGCGCTTCATTAACGGCCCATCAACAGGC
AGTACACGAGACGTTGTTACTGAAAAGTGGGGAACTTCAAAACAATTTAG
ATAAGTTGACTGAAGAACTCTCATATATTGCACATGAAAATGAGAGTCTT
AAAGGACATGTTAAAGAATTAGAAGAAATTAATAGGCATCAGATTGAAGA
ACTTGATGCTGTAGCAGAACTTCACCGAAAAATGGAATTAGAACTGAAAA
TATATCGAGATAATAAAAATCAAGATTCACAATCTATTCAAATTGATAAA
GAAATTGAAAGGTCTTTATTTTTGTCAACAAACACAATAAAAAATCTAGA
AAAAGACCTTTCATTAAGAATTCATGAATGTGAAATTCTGACAAAAACAA
TGGAAAATCAAAAACAAATTATTGAAAATCAGCAAAAGGCCATAGAAATA
CTTTCAATAGAGAGTACTGACGAAAAAAAACAAATAAAAATTGAACCCGG
AAACGAGGAACTCTGTGACATTGCATTGATGAAAAATTTACAATTAGAAA
ACAACAATTTAAAACAAAAAATCAAAAGTTTGAACGCGAAAATAGAAATC
GCCATCAACAGGGAAAGGCAATATCAAATCAAACTCCGTGAAATGGAAGT
TACAGCAAAAGATTTTAGAGTAACAGAAGAAAATCTAAACAAGAATTTAA
ATGAATTATCAAAAGAAAATAATGAAAAGAAAAAAAAAATTAATTTTTTT
TCAGAAAAAATAGATGACCTTGAAAAAGAAAACACTTTTCTTTTAAAATC
TATTCAAAGTTTAGAAGAGGAGCGAGAAAATGAAAAAAGGGATTTTTTTT
TCGAAAAAGAAAATCTTAGAAAAAGTTGTCATTCATTAGGAAGTCAATTG
AGTAAATCCCATCTGATGCAAACCCAGTTGGAATCCAGCATTATGGAAAT
CCAATCTAAAAGTTCCATAATCAGGAAACTAGAGGAAGCTAATGATAGAC
TAGCAATCTCTGTGAGGAACGCTCTGTCCAAAATTGAACTTTTATCTCGA
AGTGATGTTGAAATGAATCCCAAACAATTAATTAAGGAGAATTTGCAAAT
TCAGAAAGAAAATATTTTATTGGAAGATCAAATAAATCAGTTGAAAAGGA
AAGTAGATATCACGGGCACGTCACAGCAACTTCAAGACCTCAATAAACAA
ATTGATGGTCTTCAGTTTGAAATTAAGAAAAAAAATATCAAAATTGATGA
ATTAGAAGAGAATTTGAGAAAACTACAAAGAGGATCTCCGAATTCTTCTT
CGTCTCAGAAGAAATCTTTCAGAAAATTTGACCATTTGCAATTCAAATAT
GATGAATTGAGAAAAAAATATGAAACTCAAATGGCTCAAGTAGAAAAAAC
TGATTCTCTTCTCAAAGAACTTTATGAAACTAATACGAATCTTTTGAAAT
CATTAAAACGAATGGAAGAATTGAAAGATAAATCTGATTTAACAGTCATT
CAGCTTGAAGAAAAAGTTCAAAACTTACAAAATGTATTGAAAAATAATTA
AATTGAATAAATAATAAAATTTGAAATATGTG
back to top

protein sequence of SMED30019752-orf-1

>SMED30019752-orf-1 ID=SMED30019752-orf-1|Name=SMED30019752-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=803bp
MDALNKFLENLKPGGASNLPKSKFEQTLTDDSEVDSPEPQEPTIKTDINK
PSNEIELKKEVPPKPRKGLVKQLADVHHESLEIEENSNNNNSKPVEEIKI
APNPLPRKKKIPKINEPENESVEKLWQDLNVGKNGFLTVTELEKVCNYLG
MNTPDQKSLKSLFSVIDTDSDGRVSLVEFAAGLKKYGNIEKISNLNLSGS
SISGLFTCIDPNRQGFCEAQKVVELWASGGILNGNEVLDYLEFTINEPVN
LNALSKALEQEIINENLDAITLAAIITYQKELYYFRNQQIENPGASLTAH
QQAVHETLLLKSGELQNNLDKLTEELSYIAHENESLKGHVKELEEINRHQ
IEELDAVAELHRKMELELKIYRDNKNQDSQSIQIDKEIERSLFLSTNTIK
NLEKDLSLRIHECEILTKTMENQKQIIENQQKAIEILSIESTDEKKQIKI
EPGNEELCDIALMKNLQLENNNLKQKIKSLNAKIEIAINRERQYQIKLRE
MEVTAKDFRVTEENLNKNLNELSKENNEKKKKINFFSEKIDDLEKENTFL
LKSIQSLEEERENEKRDFFFEKENLRKSCHSLGSQLSKSHLMQTQLESSI
MEIQSKSSIIRKLEEANDRLAISVRNALSKIELLSRSDVEMNPKQLIKEN
LQIQKENILLEDQINQLKRKVDITGTSQQLQDLNKQIDGLQFEIKKKNIK
IDELEENLRKLQRGSPNSSSSQKKSFRKFDHLQFKYDELRKKYETQMAQV
EKTDSLLKELYETNTNLLKSLKRMEELKDKSDLTVIQLEEKVQNLQNVLK
NN*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003117parapharyngeal cell
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
Vocabulary: molecular function
TermDefinition
GO:0005509calcium ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 757..802
NoneNo IPR availableCOILSCoilCoilcoord: 463..497
NoneNo IPR availableCOILSCoilCoilcoord: 413..440
NoneNo IPR availableCOILSCoilCoilcoord: 505..574
NoneNo IPR availableCOILSCoilCoilcoord: 610..630
NoneNo IPR availableCOILSCoilCoilcoord: 305..325
NoneNo IPR availableCOILSCoilCoilcoord: 673..714
NoneNo IPR availableCOILSCoilCoilcoord: 650..670
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 107..273
e-value: 8.0E-13
score: 50.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..67
NoneNo IPR availablePANTHERPTHR18905NINEINcoord: 197..288
NoneNo IPR availablePANTHERPTHR18905:SF12NINEIN-LIKE PROTEINcoord: 106..189
NoneNo IPR availablePANTHERPTHR18905NINEINcoord: 106..189
NoneNo IPR availablePANTHERPTHR18905:SF12NINEIN-LIKE PROTEINcoord: 197..288
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 123..181
e-value: 2.7E-7
score: 31.0
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 154..189
score: 11.808
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 117..152
score: 9.269
IPR002048EF-hand domainCDDcd00051EFhcoord: 133..184
e-value: 2.38461E-6
score: 43.3053
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 167..179
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 114..244