SMED30019702
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30019702 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13
Alignments
SMED30019702 aligns in the following genomic locations:
Homology
BLAST of SMED30019702 vs. Ensembl Human
Match: SRSF10 (serine and arginine rich splicing factor 10 [Source:HGNC Symbol;Acc:HGNC:16713]) HSP 1 Score: 78.9518 bits (193), Expect = 2.335e-17 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R N+ LFVRN++D R EDL + FG+YG I ++ +PLD+Y+ R +GF +V+FED RDAEDA LD Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. Ensembl Human
Match: SRSF10 (serine and arginine rich splicing factor 10 [Source:HGNC Symbol;Acc:HGNC:16713]) HSP 1 Score: 78.9518 bits (193), Expect = 2.462e-17 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R N+ LFVRN++D R EDL + FG+YG I ++ +PLD+Y+ R +GF +V+FED RDAEDA LD Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. Ensembl Human
Match: SRSF10 (serine and arginine rich splicing factor 10 [Source:HGNC Symbol;Acc:HGNC:16713]) HSP 1 Score: 78.9518 bits (193), Expect = 2.474e-17 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R N+ LFVRN++D R EDL + FG+YG I ++ +PLD+Y+ R +GF +V+FED RDAEDA LD Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. Ensembl Human
Match: SRSF10 (serine and arginine rich splicing factor 10 [Source:HGNC Symbol;Acc:HGNC:16713]) HSP 1 Score: 79.337 bits (194), Expect = 2.706e-17 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R N+ LFVRN++D R EDL + FG+YG I ++ +PLD+Y+ R +GF +V+FED RDAEDA LD Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. Ensembl Human
Match: SRSF10 (serine and arginine rich splicing factor 10 [Source:HGNC Symbol;Acc:HGNC:16713]) HSP 1 Score: 78.9518 bits (193), Expect = 3.056e-17 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R N+ LFVRN++D R EDL + FG+YG I ++ +PLD+Y+ R +GF +V+FED RDAEDA LD Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. Ensembl Celegans
Match: rsp-4 (Probable splicing factor, arginine/serine-rich 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09511]) HSP 1 Score: 53.5286 bits (127), Expect = 6.394e-9 Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = -1 Query: 571 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLAPAEMR 792 + L + NLS + DL + F +YG I ++ IP D YS + KGFGFV F + RDAE A R D +L+ E+R Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD-GKLVDGRELR 91
BLAST of SMED30019702 vs. Ensembl Celegans
Match: rsp-4 (Probable splicing factor, arginine/serine-rich 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09511]) HSP 1 Score: 53.5286 bits (127), Expect = 1.986e-8 Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = -1 Query: 571 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLAPAEMR 792 + L + NLS + DL + F +YG I ++ IP D YS + KGFGFV F + RDAE A R D +L+ E+R Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD-GKLVDGRELR 91
BLAST of SMED30019702 vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6]) HSP 1 Score: 51.6026 bits (122), Expect = 1.746e-7 Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = -1 Query: 619 LFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDA 786 ++V NL VR +++E +F KYGRI + I SGR F FVEFED RDAEDA Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK----SGRGPAFAFVEFEDHRDAEDA 62
BLAST of SMED30019702 vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6]) HSP 1 Score: 51.6026 bits (122), Expect = 1.746e-7 Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = -1 Query: 619 LFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDA 786 ++V NL VR +++E +F KYGRI + I SGR F FVEFED RDAEDA Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK----SGRGPAFAFVEFEDHRDAEDA 62
BLAST of SMED30019702 vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6]) HSP 1 Score: 51.6026 bits (122), Expect = 1.746e-7 Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = -1 Query: 619 LFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDA 786 ++V NL VR +++E +F KYGRI + I SGR F FVEFED RDAEDA Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK----SGRGPAFAFVEFEDHRDAEDA 62
BLAST of SMED30019702 vs. Ensembl Fly
Match: SC35 (gene:FBgn0265298 transcript:FBtr0306252) HSP 1 Score: 50.8322 bits (120), Expect = 2.198e-7 Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = -1 Query: 571 CLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLAPAEMR 789 L V NL+ R EDL ++F + G + +I IP D Y+ +GF FV F D RDAEDA +D ++L E+R Sbjct: 24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMD-GRMLDGRELR 95
BLAST of SMED30019702 vs. Ensembl Fly
Match: SC35 (gene:FBgn0265298 transcript:FBtr0302910) HSP 1 Score: 50.8322 bits (120), Expect = 2.198e-7 Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = -1 Query: 571 CLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLAPAEMR 789 L V NL+ R EDL ++F + G + +I IP D Y+ +GF FV F D RDAEDA +D ++L E+R Sbjct: 24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMD-GRMLDGRELR 95
BLAST of SMED30019702 vs. Ensembl Fly
Match: SC35 (gene:FBgn0265298 transcript:FBtr0089899) HSP 1 Score: 50.8322 bits (120), Expect = 2.198e-7 Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = -1 Query: 571 CLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLAPAEMR 789 L V NL+ R EDL ++F + G + +I IP D Y+ +GF FV F D RDAEDA +D ++L E+R Sbjct: 24 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMD-GRMLDGRELR 95
BLAST of SMED30019702 vs. Ensembl Fly
Match: Rsf1 (gene:FBgn0011305 transcript:FBtr0333411) HSP 1 Score: 50.8322 bits (120), Expect = 2.305e-7 Identity = 28/78 (35.90%), Postives = 47/78 (60.26%), Query Frame = -1 Query: 586 LAVMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA 819 ++ M ++ + ++V NL+D+V+ +DLE F KYG++ ++ I + GF FVEFE DAE A L+ ++LL Sbjct: 1 MSSMGDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFN-----PPGFAFVEFEHRDDAEKACDILNGSELLG 73
BLAST of SMED30019702 vs. Ensembl Fly
Match: Rsf1 (gene:FBgn0011305 transcript:FBtr0080079) HSP 1 Score: 50.8322 bits (120), Expect = 2.305e-7 Identity = 28/78 (35.90%), Postives = 47/78 (60.26%), Query Frame = -1 Query: 586 LAVMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA 819 ++ M ++ + ++V NL+D+V+ +DLE F KYG++ ++ I + GF FVEFE DAE A L+ ++LL Sbjct: 1 MSSMGDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFN-----PPGFAFVEFEHRDDAEKACDILNGSELLG 73
BLAST of SMED30019702 vs. Ensembl Zebrafish
Match: srsf10b (serine and arginine rich splicing factor 10b [Source:ZFIN;Acc:ZDB-GENE-040426-1415]) HSP 1 Score: 83.9593 bits (206), Expect = 9.656e-19 Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R NS LFVRN+SD R EDL + FG+YG I ++ IPLD+YS R +GF +++FED RDAEDA LD Sbjct: 6 RPPNSSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. Ensembl Zebrafish
Match: srsf10b (serine and arginine rich splicing factor 10b [Source:ZFIN;Acc:ZDB-GENE-040426-1415]) HSP 1 Score: 83.9593 bits (206), Expect = 9.656e-19 Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R NS LFVRN+SD R EDL + FG+YG I ++ IPLD+YS R +GF +++FED RDAEDA LD Sbjct: 6 RPPNSSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. Ensembl Zebrafish
Match: CR293507.1 (pep chromosome:GRCz11:16:52536999:52540056:-1 gene:ENSDARG00000112572.1 transcript:ENSDART00000188304.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR293507.1) HSP 1 Score: 61.6178 bits (148), Expect = 2.409e-12 Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = -1 Query: 643 LAVMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFE 819 +A R N+ LF+RN+SD R EDL + FG+YG I ++ IP+D+YS R +GF +V++ Sbjct: 1 MARYMRPPNTSLFIRNISDDSRPEDLRREFGRYGPIVDVYIPVDFYSRRPRGFAYVQYP 59
BLAST of SMED30019702 vs. Ensembl Zebrafish
Match: srsf2a (serine and arginine rich splicing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040426-2706]) HSP 1 Score: 57.7658 bits (138), Expect = 2.883e-10 Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = -1 Query: 592 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 792 + L V NL+ R E L ++F KYGR+ ++ IP D Y+ +GF FV F D RDAEDA +D A L Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGALL 80
BLAST of SMED30019702 vs. Ensembl Zebrafish
Match: srsf2a (serine and arginine rich splicing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040426-2706]) HSP 1 Score: 58.5362 bits (140), Expect = 4.693e-10 Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = -1 Query: 592 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 792 + L V NL+ R E L ++F KYGR+ ++ IP D Y+ +GF FV F D RDAEDA +D A L Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGALL 80
BLAST of SMED30019702 vs. Ensembl Xenopus
Match: srsf12 (serine/arginine-rich splicing factor 12 [Source:NCBI gene;Acc:493321]) HSP 1 Score: 80.8777 bits (198), Expect = 2.250e-17 Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = -1 Query: 619 LAVMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDA 819 ++ SR N+ LFVRN++D R EDL + FG+YG I ++ +PLD+Y+ R +GF +++FED RDAEDA Sbjct: 1 MSRYSRPPNTSLFVRNVADATRPEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYIQFEDVRDAEDA 67
BLAST of SMED30019702 vs. Ensembl Xenopus
Match: srsf2 (serine/arginine-rich splicing factor 2 [Source:NCBI gene;Acc:394953]) HSP 1 Score: 58.5362 bits (140), Expect = 9.778e-10 Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = -1 Query: 592 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 792 + L V NL+ R E L ++F KYGR+ ++ IP D Y+ +GF FV F D RDAEDA +D A L Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 80
BLAST of SMED30019702 vs. Ensembl Xenopus
Match: srsf2 (serine/arginine-rich splicing factor 2 [Source:NCBI gene;Acc:394953]) HSP 1 Score: 58.5362 bits (140), Expect = 1.213e-9 Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = -1 Query: 592 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 792 + L V NL+ R E L ++F KYGR+ ++ IP D Y+ +GF FV F D RDAEDA +D A L Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 80
BLAST of SMED30019702 vs. Ensembl Xenopus
Match: srsf12 (serine/arginine-rich splicing factor 12 [Source:NCBI gene;Acc:493321]) HSP 1 Score: 53.1434 bits (126), Expect = 1.178e-7 Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = -1 Query: 619 LFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFE--DFRDAEDA 786 F N + R EDL + FG+YG I ++ +PLD+Y+ R +GF ++++ D RDAEDA Sbjct: 4 CFKYNNTSIYRPEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYIQYPLFDVRDAEDA 61
BLAST of SMED30019702 vs. Ensembl Xenopus
Match: hmgn2 (high mobility group nucleosomal binding domain 2 [Source:Xenbase;Acc:XB-GENE-1015271]) HSP 1 Score: 52.7582 bits (125), Expect = 3.418e-7 Identity = 25/47 (53.19%), Postives = 29/47 (61.70%), Query Frame = -1 Query: 646 LFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEF 786 LFVRNL +DLEKLF KYG I I P+D + + KGF FV F Sbjct: 388 LFVRNLPYTCNEDDLEKLFSKYGPISEIHFPIDSLTKKPKGFAFVTF 434
BLAST of SMED30019702 vs. Ensembl Mouse
Match: Srsf12 (serine/arginine-rich splicing factor 12 [Source:MGI Symbol;Acc:MGI:2661424]) HSP 1 Score: 82.4185 bits (202), Expect = 4.819e-18 Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = -1 Query: 619 LAVMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDA 819 ++ +R N+ LFVRN++D R EDL + FG+YG I ++ IPLD+YS R +GF +V+FED RDAEDA Sbjct: 1 MSRYTRPPNTSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYVQFEDVRDAEDA 67
BLAST of SMED30019702 vs. Ensembl Mouse
Match: Srsf10 (serine/arginine-rich splicing factor 10 [Source:MGI Symbol;Acc:MGI:1333805]) HSP 1 Score: 79.337 bits (194), Expect = 1.858e-17 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R N+ LFVRN++D R EDL + FG+YG I ++ +PLD+Y+ R +GF +V+FED RDAEDA LD Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. Ensembl Mouse
Match: Srsf10 (serine/arginine-rich splicing factor 10 [Source:MGI Symbol;Acc:MGI:1333805]) HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-17 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R N+ LFVRN++D R EDL + FG+YG I ++ +PLD+Y+ R +GF +V+FED RDAEDA LD Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. Ensembl Mouse
Match: Srsf10 (serine/arginine-rich splicing factor 10 [Source:MGI Symbol;Acc:MGI:1333805]) HSP 1 Score: 80.1073 bits (196), Expect = 3.744e-17 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R N+ LFVRN++D R EDL + FG+YG I ++ +PLD+Y+ R +GF +V+FED RDAEDA LD Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. Ensembl Mouse
Match: Srsf10 (serine/arginine-rich splicing factor 10 [Source:MGI Symbol;Acc:MGI:1333805]) HSP 1 Score: 80.1073 bits (196), Expect = 3.802e-17 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R N+ LFVRN++D R EDL + FG+YG I ++ +PLD+Y+ R +GF +V+FED RDAEDA LD Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. UniProt/SwissProt
Match: sp|Q8WXF0|SRS12_HUMAN (Serine/arginine-rich splicing factor 12 OS=Homo sapiens OX=9606 GN=SRSF12 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.549e-16 Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = -1 Query: 619 LAVMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDA 819 ++ +R N+ LF+RN++D R EDL + FG+YG I ++ IPLD+Y+ R +GF +V+FED RDAEDA Sbjct: 1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDA 67
BLAST of SMED30019702 vs. UniProt/SwissProt
Match: sp|Q9R0U0|SRS10_MOUSE (Serine/arginine-rich splicing factor 10 OS=Mus musculus OX=10090 GN=Srsf10 PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 2.619e-16 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R N+ LFVRN++D R EDL + FG+YG I ++ +PLD+Y+ R +GF +V+FED RDAEDA LD Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. UniProt/SwissProt
Match: sp|O75494|SRS10_HUMAN (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.619e-16 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -1 Query: 604 RRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 804 R N+ LFVRN++D R EDL + FG+YG I ++ +PLD+Y+ R +GF +V+FED RDAEDA LD Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLD 72
BLAST of SMED30019702 vs. UniProt/SwissProt
Match: sp|Q9SEU4|SRC33_ARATH (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 2.975e-11 Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = -1 Query: 586 SRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA 807 SR + L VRNL R EDL K F ++G + +I +P DYY+G +GFGFV+F D DA DAK +D LL Sbjct: 31 SRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLG 104
BLAST of SMED30019702 vs. UniProt/SwissProt
Match: sp|Q9LHP2|SL30A_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 5.199e-10 Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = -1 Query: 586 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA 792 + L VRNL R EDL + F ++G + +I +P DYY+G +GFGF++F D DA +AK ++D LL Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLG 105
BLAST of SMED30019702 vs. TrEMBL
Match: A0A0X3NKY1 (Serine/arginine-rich splicing factor 12 (Fragment) OS=Schistocephalus solidus OX=70667 GN=SRS12 PE=4 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.082e-19 Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = -1 Query: 559 VMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLL--------------APAEMRDKGK 813 +M RR +S L++RN+ D R+EDL + FG++G I ++ IP DYYSGRMKGF FVEFED RDAEDA +D ++ L PAEMRD+ + Sbjct: 43 IMPRRGSS-LYIRNIPDSCRHEDLRRTFGRFGPIVDVTIPTDYYSGRMKGFAFVEFEDPRDAEDAHRNMDHSRFLGRRIEVEFTRGVRKTPAEMRDRDR 140
BLAST of SMED30019702 vs. TrEMBL
Match: A0A3M7RMD8 (Serine arginine-rich splicing factor 12 OS=Brachionus plicatilis OX=10195 GN=BpHYR1_048613 PE=4 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.460e-19 Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = -1 Query: 586 NSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA 795 ++ L++RN+SDRVRY+DL +LF KYGR+ ++ IPLDYYSG KGF FVE+ED RDAE+A+ R+D +L Sbjct: 9 STTLYIRNISDRVRYDDLRRLFAKYGRVLDVTIPLDYYSGLPKGFCFVEYEDPRDAEEAQYRMDRQRLFG 78
BLAST of SMED30019702 vs. TrEMBL
Match: A0A5K3F0B4 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.119e-18 Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = -1 Query: 565 KNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA--------------PAEMRDK 798 + +++RN+ D R+EDL + FG++G + ++ IP DYYSGRMKGF FVEFED RDAEDA+ +D ++ L PAEMRD+ Sbjct: 3 RRCSIYIRNIPDSCRHEDLRRTFGRFGPVVDVTIPTDYYSGRMKGFAFVEFEDPRDAEDAQRSMDHSRFLGRRIEVEFTRGYRKTPAEMRDR 94
BLAST of SMED30019702 vs. TrEMBL
Match: A0A4S2M8F8 (RRM domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_001993 PE=4 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.411e-18 Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = -1 Query: 571 MSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA--------------PAEMR 810 M RR NS L+VR+L D R+EDL + FG+YGRI +I IPLD+ +GRMKGF F+EFED RDAEDA +D + + PAEMR Sbjct: 1 MPRRANS-LYVRHLPDSCRHEDLRRAFGRYGRIIDITIPLDFNTGRMKGFAFIEFEDPRDAEDAHYNMDHTRFMGRDIEVEFTRGYRKTPAEMR 93
BLAST of SMED30019702 vs. TrEMBL
Match: A0A0V0J7Y2 (Serine/arginine-rich splicing factor 10 (Fragment) OS=Schistocephalus solidus OX=70667 GN=SRS10 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.688e-18 Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = -1 Query: 559 VMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLL---------------------------APAEMRDKGK 813 +M RR +S L++RN+ D R+EDL + FG++G I ++ IP DYYSGRMKGF FVEFED RDAEDA +D ++ L APAEMRD+ + Sbjct: 43 IMPRRGSS-LYIRNIPDSCRHEDLRRTFGRFGPIVDVTIPTDYYSGRMKGFAFVEFEDPRDAEDAHRNMDHSRFLGRRIEVEFTRGVRKSKNVSFPSYLNLPAPAEMRDRDR 153
BLAST of SMED30019702 vs. Ensembl Cavefish
Match: srsf10b (serine/arginine-rich splicing factor 10-like [Source:NCBI gene;Acc:103044580]) HSP 1 Score: 88.1965 bits (217), Expect = 4.245e-20 Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = -1 Query: 604 LAVMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 819 +A R +NS LF+RN+SD R EDL + FG+YG I ++ IPLDY+S R +GF +V+FED RDAEDA LD Sbjct: 1 MAKYMRAQNSSLFIRNISDDSRPEDLRREFGRYGPITDVYIPLDYHSRRPRGFAYVQFEDVRDAEDAMHSLD 72
BLAST of SMED30019702 vs. Ensembl Cavefish
Match: ENSAMXT00000041856.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000064.1:767504:770050:1 gene:ENSAMXG00000031867.1 transcript:ENSAMXT00000041856.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 60.8474 bits (146), Expect = 5.342e-12 Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = -1 Query: 643 LAVMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFE 819 +A R N+ LF+RN+SD R EDL + FG+YG I ++ IP+D+YS R +GF ++++ Sbjct: 1 MARYLRPPNTSLFIRNISDESRPEDLRREFGRYGPIVDVYIPVDFYSRRPRGFAYIQYP 59
BLAST of SMED30019702 vs. Ensembl Cavefish
Match: srsf2a (serine/arginine-rich splicing factor 2-like [Source:NCBI gene;Acc:103027270]) HSP 1 Score: 58.151 bits (139), Expect = 8.967e-10 Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = -1 Query: 592 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 792 + L V NL+ R E L ++F KYGR+ ++ IP D Y+ +GF FV F D RDAEDA +D A L Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGALL 80
BLAST of SMED30019702 vs. Ensembl Cavefish
Match: elavl3 (ELAV like RNA binding protein 3 [Source:NCBI gene;Acc:103029670]) HSP 1 Score: 51.9878 bits (123), Expect = 2.413e-7 Identity = 23/62 (37.10%), Postives = 36/62 (58.06%), Query Frame = -1 Query: 604 CLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 789 C+FV NLS L +LFG +G + N+K+ D+ + + KGFGFV ++ +A A L+ Sbjct: 270 CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 331 HSP 2 Score: 50.447 bits (119), Expect = 8.631e-7 Identity = 25/74 (33.78%), Postives = 44/74 (59.46%), Query Frame = -1 Query: 577 KNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLAPAE 798 +++ L+V L + +D+E+LF +YGRI +I +D +G +G GF+ F+ +AE+A L+ + L AE Sbjct: 122 RDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAE 195
BLAST of SMED30019702 vs. Ensembl Cavefish
Match: elavl3 (ELAV like RNA binding protein 3 [Source:NCBI gene;Acc:103029670]) HSP 1 Score: 51.9878 bits (123), Expect = 2.577e-7 Identity = 23/62 (37.10%), Postives = 36/62 (58.06%), Query Frame = -1 Query: 604 CLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 789 C+FV NLS L +LFG +G + N+K+ D+ + + KGFGFV ++ +A A L+ Sbjct: 283 CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 344 HSP 2 Score: 50.447 bits (119), Expect = 9.288e-7 Identity = 25/74 (33.78%), Postives = 44/74 (59.46%), Query Frame = -1 Query: 577 KNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLAPAE 798 +++ L+V L + +D+E+LF +YGRI +I +D +G +G GF+ F+ +AE+A L+ + L AE Sbjct: 122 RDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAE 195
BLAST of SMED30019702 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002832.1 (pep scaffold:Pmarinus_7.0:GL476732:699988:701739:-1 gene:ENSPMAG00000002585.1 transcript:ENSPMAT00000002832.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 50.8322 bits (120), Expect = 1.257e-8 Identity = 23/67 (34.33%), Postives = 41/67 (61.19%), Query Frame = -1 Query: 586 LFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA 786 LFV + + + +D+ FG++G I N+ + LD +G +KG+ VE+E F++A+ A L+ A +L Sbjct: 12 LFVTGVHEEAQEDDMHDKFGEFGEIKNVHLNLDRRTGFLKGYALVEYETFKEAQAAMEGLNGADILG 78
BLAST of SMED30019702 vs. Ensembl Sea Lamprey
Match: tra2b (transformer 2 beta homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1094]) HSP 1 Score: 51.9878 bits (123), Expect = 3.692e-8 Identity = 25/68 (36.76%), Postives = 42/68 (61.76%), Query Frame = -1 Query: 592 NSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 795 N+CL V LS DL ++FG+YG + ++ + D SGR +GF FV ++ D+++AK R++ +L Sbjct: 105 NTCLGVFGLSLYTTEHDLREVFGRYGPVADVNVVYDQQSGRPRGFAFVYMQNMEDSKEAKERVNGMEL 172
BLAST of SMED30019702 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000820.1 (pep scaffold:Pmarinus_7.0:GL483865:282:6617:-1 gene:ENSPMAG00000000738.1 transcript:ENSPMAT00000000820.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 50.447 bits (119), Expect = 6.249e-8 Identity = 25/73 (34.25%), Postives = 42/73 (57.53%), Query Frame = -1 Query: 592 MSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 810 M+ L+V L++ V + L F +G I +I++PLDY + + +GFGFVEFE D+ A ++ ++L Sbjct: 1 MAASNKRILYVGGLAEEVDEKVLHAAFIPFGDIVDIQMPLDYETEKHRGFGFVEFEAAEDSAAAIDNMNESEL 73
BLAST of SMED30019702 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007448.1 (pep scaffold:Pmarinus_7.0:GL479027:131562:138944:-1 gene:ENSPMAG00000006727.1 transcript:ENSPMAT00000007448.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 49.2914 bits (116), Expect = 6.455e-8 Identity = 24/67 (35.82%), Postives = 36/67 (53.73%), Query Frame = -1 Query: 586 LFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA 786 L++R L +DL KL YG+I + K LD + + KG+GFV+F+ A+ A T L + A Sbjct: 57 LYIRGLPPHTSDQDLVKLCHPYGKIVSTKAILDKTTNQCKGYGFVDFDSPTAAQKAVTALKATGIQA 123
BLAST of SMED30019702 vs. Ensembl Sea Lamprey
Match: SRSF5 (serine and arginine rich splicing factor 5 [Source:HGNC Symbol;Acc:HGNC:10787]) HSP 1 Score: 50.8322 bits (120), Expect = 1.119e-7 Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = -1 Query: 592 LFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 786 +F+ L VR +D+EK F YG+I +I I GFGFVEF+D RDA+DA + L+ +L Sbjct: 7 VFIARLGPHVRTKDVEKFFKGYGKIRDIDI--------KAGFGFVEFDDCRDADDAVSDLNGREL 63
BLAST of SMED30019702 vs. Ensembl Yeast
Match: MRD1 (Essential conserved small ribosomal subunit (40s) synthesis factor; component of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains and binds to the pre-rRNA at two sites within the 18S region [Source:SGD;Acc:S000006316]) HSP 1 Score: 49.6766 bits (117), Expect = 2.578e-7 Identity = 25/72 (34.72%), Postives = 41/72 (56.94%), Query Frame = -1 Query: 604 LAVMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 819 LA+ + LF+RN+ + ED KLF +G + + + LD +G+ KGF +V F+D ++A +A LD Sbjct: 336 LAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELD 407
BLAST of SMED30019702 vs. Ensembl Yeast
Match: PAB1 (Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex [Source:SGD;Acc:S000000967]) HSP 1 Score: 46.595 bits (109), Expect = 2.281e-6 Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = -1 Query: 613 LAVMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKT 819 L M++ + LFV+NL D V E LE+ F YG I + K+ + +G+ KGFGFV F +A A T Sbjct: 313 LEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKV-MRTENGKSKGFGFVCFSTPEEATKAIT 380 HSP 2 Score: 44.669 bits (104), Expect = 9.714e-6 Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = -1 Query: 592 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 792 + L+V+N++ E ++LF K+G I + + D G++KGFGFV +E DA A L+ ++L Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEALNDSEL 284
BLAST of SMED30019702 vs. Ensembl Yeast
Match: NSR1 (Nucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis; binds to single stranded telomeric DNA and mRNA; methylated by Hmt1p; interaction with Top1p and nucleolar localization are negatively regulated by polyphosphorylation [Source:SGD;Acc:S000003391]) HSP 1 Score: 45.4394 bits (106), Expect = 4.822e-6 Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = -1 Query: 595 CLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQ 789 LF+ NLS + + +LF K+G + +++IP + + KGFG+V+F + EDAK LD Q Sbjct: 268 TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNM---EDAKKALDALQ 329
BLAST of SMED30019702 vs. Ensembl Yeast
Match: HRP1 (Subunit of cleavage factor I; cleavage factor I is a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences; required for genome stability [Source:SGD;Acc:S000005483]) HSP 1 Score: 45.0542 bits (105), Expect = 6.921e-6 Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = -1 Query: 643 KNSC-LFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFE 798 K SC +F+ L+ ++L + FGKYG + ++KI D +GR +GFGF+ FE Sbjct: 156 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFE 208
BLAST of SMED30019702 vs. Ensembl Nematostella
Match: EDO49282 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RH27]) HSP 1 Score: 77.0258 bits (188), Expect = 4.223e-18 Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = -1 Query: 586 SRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFG--FVEFEDFRDAEDAKTRLDVAQLLA 807 SR NS ++VRNL R +DL ++FGKYGRI ++ IPLDYY+ +GF ++ FED RDAEDA LD A LL Sbjct: 5 SRPPNSSIYVRNLHPDTRPDDLRRMFGKYGRITDVYIPLDYYTREPRGFCYIYITFEDIRDAEDALYYLDRAMLLG 80
BLAST of SMED30019702 vs. Ensembl Nematostella
Match: EDO30149 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1M0]) HSP 1 Score: 56.225 bits (134), Expect = 1.729e-10 Identity = 25/67 (37.31%), Postives = 43/67 (64.18%), Query Frame = -1 Query: 586 LFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA 786 LFV N+ + + +D+ +LF YG I N+ + LD +G +KG+ VE+E F++A+ A L+ A++L Sbjct: 7 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLG 73
BLAST of SMED30019702 vs. Ensembl Nematostella
Match: EDO45702 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RS89]) HSP 1 Score: 56.6102 bits (135), Expect = 2.645e-10 Identity = 25/68 (36.76%), Postives = 43/68 (63.24%), Query Frame = -1 Query: 586 CLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA 789 LFV N+ + + +D+ +LF YG I N+ + LD +G +KG+ VE+E F++A+ A L+ A++L Sbjct: 39 ILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLG 106
BLAST of SMED30019702 vs. Ensembl Nematostella
Match: EDO47928 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKL6]) HSP 1 Score: 55.4546 bits (132), Expect = 2.692e-10 Identity = 25/67 (37.31%), Postives = 43/67 (64.18%), Query Frame = -1 Query: 586 LFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA 786 LFV N+ + + +D+ +LF YG I N+ + LD +G +KG+ VE+E F++A+ A L+ A++L Sbjct: 7 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLG 73
BLAST of SMED30019702 vs. Ensembl Nematostella
Match: EDO44802 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUS7]) HSP 1 Score: 54.299 bits (129), Expect = 5.868e-9 Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = -1 Query: 592 CLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 789 CL V LS DL +F KYG + I+I D+ +GR +GFGFV +ED +DAE AK R +L Sbjct: 96 CLGVFGLSLYTTERDLRPVFEKYGPVEAIQIVYDHQTGRSRGFGFVYYEDTKDAEVAKERTTGIEL 161
BLAST of SMED30019702 vs. Ensembl Medaka
Match: srsf10b (serine and arginine rich splicing factor 10 [Source:NCBI gene;Acc:101171844]) HSP 1 Score: 80.4925 bits (197), Expect = 1.573e-17 Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = -1 Query: 604 LAVMSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLD 819 +A R N+ LFVRN+SD R EDL + FG+YG I ++ IPLD+Y+ + +GF +++FED RDAEDA LD Sbjct: 1 MARYMRPPNTSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYTRQPRGFAYIQFEDVRDAEDALHSLD 72
BLAST of SMED30019702 vs. Ensembl Medaka
Match: srsf2a (serine/arginine-rich splicing factor 2 [Source:NCBI gene;Acc:100049528]) HSP 1 Score: 57.3806 bits (137), Expect = 1.906e-9 Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = -1 Query: 592 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 792 + L V NL+ R E L ++F KYGR+ ++ IP D YS +GF FV F D RDAEDA +D A L Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYSKESRGFAFVRFFDKRDAEDAMDAMDGALL 80
BLAST of SMED30019702 vs. Ensembl Medaka
Match: srsf2a (serine/arginine-rich splicing factor 2 [Source:NCBI gene;Acc:100049528]) HSP 1 Score: 57.3806 bits (137), Expect = 1.906e-9 Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = -1 Query: 592 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 792 + L V NL+ R E L ++F KYGR+ ++ IP D YS +GF FV F D RDAEDA +D A L Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYSKESRGFAFVRFFDKRDAEDAMDAMDGALL 80
BLAST of SMED30019702 vs. Ensembl Medaka
Match: ENSORLT00000001514.2 (serine/arginine-rich splicing factor 2 [Source:NCBI gene;Acc:101163660]) HSP 1 Score: 56.9954 bits (136), Expect = 2.040e-9 Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = -1 Query: 592 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQL 792 + L V NL+ R E L +F KYGR+ +I IP D Y+ +GF FV F D RDAEDA +D A L Sbjct: 14 TSLKVDNLTYRTSPETLRYVFEKYGRVGDIYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGALL 80
BLAST of SMED30019702 vs. Ensembl Medaka
Match: srsf5a (serine and arginine rich splicing factor 5 [Source:NCBI gene;Acc:101161448]) HSP 1 Score: 52.373 bits (124), Expect = 1.305e-7 Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = -1 Query: 586 SCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA 792 S +F+ LS + R D+EK F YGRI I + GFGFVEF+D RDA+DA L+ +LL+ Sbjct: 4 SRVFIGRLSPQARERDVEKFFKGYGRIREINL--------KNGFGFVEFDDHRDADDAVYELNGKELLS 64
BLAST of SMED30019702 vs. Planmine SMEST
Match: SMESG000016033.1 (SMESG000016033.1) HSP 1 Score: 155.606 bits (392), Expect = 3.098e-47 Identity = 81/100 (81.00%), Postives = 81/100 (81.00%), Query Frame = -1 Query: 553 MSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA--------------PAEMRDKGKTT 810 MSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGF FEDFRDAEDAKTRLD AQLL PAEMRDK KTT Sbjct: 1 MSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFCTFEDFRDAEDAKTRLDGAQLLGREIGVEFTNGYKKTPAEMRDKEKTT 100
BLAST of SMED30019702 vs. Planmine SMEST
Match: SMESG000078309.1 (SMESG000078309.1) HSP 1 Score: 68.9366 bits (167), Expect = 8.428e-15 Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = -1 Query: 607 RKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRL 801 R + ++V N+ + +R ++L+++FG+YG I +P+DYYSG KGF FV+FED RDAE++ RL Sbjct: 3 RSTTTIYVGNIPEDLRRDELKRIFGRYGNIVAATLPVDYYSGIPKGFAFVQFEDIRDAEESFDRL 67
BLAST of SMED30019702 vs. Planmine SMEST
Match: SMESG000052090.1 (SMESG000052090.1) HSP 1 Score: 55.0694 bits (131), Expect = 1.381e-8 Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = -1 Query: 586 LFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAKTRLDVAQLLA 786 L++ L+D V E L+ F K+G I NI IP+DY + + +GFGF+E+E DA A ++ +L Sbjct: 20 LYIGGLADEVTEEILQNNFIKFGDITNISIPIDYSTQKHRGFGFIEYELVEDAAAAIDNMNDGELCG 86
BLAST of SMED30019702 vs. Planmine SMEST
Match: SMESG000031644.1 (SMESG000031644.1) HSP 1 Score: 53.5286 bits (127), Expect = 3.242e-8 Identity = 24/62 (38.71%), Postives = 42/62 (67.74%), Query Frame = -1 Query: 616 RKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAK 801 + ++C+ V LS + +DL ++F KYG I ++++ LD Y+GR +GFGF+ +E+ A +AK Sbjct: 85 KPSTCIGVFGLSLKTDEKDLYRVFQKYGEIKDVQLVLDNYTGRSRGFGFIYYEEVESARNAK 146
BLAST of SMED30019702 vs. Planmine SMEST
Match: SMESG000031644.1 (SMESG000031644.1) HSP 1 Score: 53.5286 bits (127), Expect = 3.369e-8 Identity = 24/62 (38.71%), Postives = 42/62 (67.74%), Query Frame = -1 Query: 616 RKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFGFVEFEDFRDAEDAK 801 + ++C+ V LS + +DL ++F KYG I ++++ LD Y+GR +GFGF+ +E+ A +AK Sbjct: 84 KPSTCIGVFGLSLKTDEKDLYRVFQKYGEIKDVQLVLDNYTGRSRGFGFIYYEEVESARNAK 145 The following BLAST results are available for this feature:
BLAST of SMED30019702 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30019702 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of SMED30019702 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of SMED30019702 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of SMED30019702 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of SMED30019702 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30019702 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30019702 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30019702 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30019702 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of SMED30019702 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 4
BLAST of SMED30019702 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of SMED30019702 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30019702 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30019702 ID=SMED30019702|Name=SMED30019702|organism=Schmidtea mediterranea sexual|type=transcript|length=846bpback to top protein sequence of SMED30019702-orf-1 >SMED30019702-orf-1 ID=SMED30019702-orf-1|Name=SMED30019702-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=140bp MSRRKNSCLFVRNLSDRVRYEDLEKLFGKYGRIYNIKIPLDYYSGRMKGFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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