Translocator protein

Overview
NameTranslocator protein
Smed IDSMED30019649
Length (bp)767
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Translocator protein (SMED30019649) t-SNE clustered cells

Violin plots show distribution of expression levels for Translocator protein (SMED30019649) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Translocator protein (SMED30019649) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Translocator protein (SMED30019649) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30019649

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30019649h1SMcG0010472 dd_Smed_v4_2256_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30019649h1SMcG0010472 dd_Smed_v4_2256_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior sideSMED30019649h1SMcG0010472 dd_Smed_v4_2256_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior muscle cellSMED30019649h1SMcG0010472 dd_Smed_v4_2256_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30019649h1SMcG0010472 dd_Smed_v4_2256_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Translocator protein vs. Ensembl Human
Match: TSPO (translocator protein [Source:HGNC Symbol;Acc:HGNC:1158])

HSP 1 Score: 112.079 bits (279), Expect = 4.311e-30
Identity = 59/138 (42.75%), Postives = 77/138 (55.80%), Query Frame = 1 
Query:  100 SSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNK 510
             S     E   WY  + KPS+ PP +V GPVW  LY  MGY SYL+WKE G FT +  +PL LY  QL  N AW  IFFG  ++GWA VD+ L+     A  + +  ++  A+ LL PY+AWL     +N   W+ N 
Sbjct:   22 GSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNH 159
[Close]
BLAST of Translocator protein vs. Ensembl Human
Match: TSPO (translocator protein [Source:HGNC Symbol;Acc:HGNC:1158])

HSP 1 Score: 112.079 bits (279), Expect = 4.311e-30
Identity = 59/138 (42.75%), Postives = 77/138 (55.80%), Query Frame = 1 
Query:  100 SSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNK 510
             S     E   WY  + KPS+ PP +V GPVW  LY  MGY SYL+WKE G FT +  +PL LY  QL  N AW  IFFG  ++GWA VD+ L+     A  + +  ++  A+ LL PY+AWL     +N   W+ N 
Sbjct:   22 GSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNH 159
[Close]
BLAST of Translocator protein vs. Ensembl Human
Match: TSPO (translocator protein [Source:HGNC Symbol;Acc:HGNC:1158])

HSP 1 Score: 112.079 bits (279), Expect = 4.311e-30
Identity = 59/138 (42.75%), Postives = 77/138 (55.80%), Query Frame = 1 
Query:  100 SSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNK 510
             S     E   WY  + KPS+ PP +V GPVW  LY  MGY SYL+WKE G FT +  +PL LY  QL  N AW  IFFG  ++GWA VD+ L+     A  + +  ++  A+ LL PY+AWL     +N   W+ N 
Sbjct:   22 GSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNH 159
[Close]
BLAST of Translocator protein vs. Ensembl Human
Match: TSPO (translocator protein [Source:HGNC Symbol;Acc:HGNC:1158])

HSP 1 Score: 87.0409 bits (214), Expect = 3.318e-21
Identity = 43/86 (50.00%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  100 SSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGW 354
             S     E   WY  + KPS+ PP +V GPVW  LY  MGY SYL+WKE G FT +  +PL LY  QL  N AW  IFFG  ++GW
Sbjct:   22 GSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGW 107
[Close]
BLAST of Translocator protein vs. Ensembl Celegans
Match: C41G7.9 (pep chromosome:WBcel235:I:9515002:9515859:-1 gene:WBGene00077771.1 transcript:C41G7.9a.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:C41G7.9)

HSP 1 Score: 47.3654 bits (111), Expect = 1.813e-6
Identity = 32/118 (27.12%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:  118 NEVKTWYMTIIKPSFTPPK-YVFGPVWSMLYGTMGYSSYLIWKEGA--FTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAW 462
             +V  W+  + KP++ P    V+  V  +    +GY+SYL++K G     ++TKL L LYG+ +    A ++    + ++G    + +++ L   A    F  I+K A  L++P+  W
Sbjct:   34 QQVADWWAALKKPNWAPKDVRVYSAVDLLTLSPLGYASYLVYKNGGGFDYNDTKLALGLYGASVTLAVA-TIPIVKKKELGCLWKNTTVVSLTAAAASFAFYKIDKKAGLLVVPFAVW 150
[Close]
BLAST of Translocator protein vs. Ensembl Celegans
Match: C41G7.9 (pep chromosome:WBcel235:I:9515002:9515839:-1 gene:WBGene00077771.1 transcript:C41G7.9a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:C41G7.9)

HSP 1 Score: 47.3654 bits (111), Expect = 1.813e-6
Identity = 32/118 (27.12%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:  118 NEVKTWYMTIIKPSFTPPK-YVFGPVWSMLYGTMGYSSYLIWKEGA--FTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAW 462
             +V  W+  + KP++ P    V+  V  +    +GY+SYL++K G     ++TKL L LYG+ +    A ++    + ++G    + +++ L   A    F  I+K A  L++P+  W
Sbjct:   34 QQVADWWAALKKPNWAPKDVRVYSAVDLLTLSPLGYASYLVYKNGGGFDYNDTKLALGLYGASVTLAVA-TIPIVKKKELGCLWKNTTVVSLTAAAASFAFYKIDKKAGLLVVPFAVW 150
[Close]
BLAST of Translocator protein vs. Ensembl Celegans
Match: C41G7.9 (pep chromosome:WBcel235:I:9515002:9516776:-1 gene:WBGene00077771.1 transcript:C41G7.9b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:C41G7.9)

HSP 1 Score: 46.595 bits (109), Expect = 3.909e-6
Identity = 32/118 (27.12%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:  118 NEVKTWYMTIIKPSFTPPK-YVFGPVWSMLYGTMGYSSYLIWKEGA--FTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAW 462
             +V  W+  + KP++ P    V+  V  +    +GY+SYL++K G     ++TKL L LYG+ +    A ++    + ++G    + +++ L   A    F  I+K A  L++P+  W
Sbjct:   75 QQVADWWAALKKPNWAPKDVRVYSAVDLLTLSPLGYASYLVYKNGGGFDYNDTKLALGLYGASVTLAVA-TIPIVKKKELGCLWKNTTVVSLTAAAASFAFYKIDKKAGLLVVPFAVW 191
[Close]
BLAST of Translocator protein vs. Ensembl Fly
Match: Tspo (gene:FBgn0031263 transcript:FBtr0078066)

HSP 1 Score: 131.724 bits (330), Expect = 6.348e-38
Identity = 66/157 (42.04%), Postives = 93/157 (59.24%), Query Frame = 1 
Query:   67 AIAIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKEGA-FTSET-KLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSASE 531
            A+ +P +  + +  +TR  +++WY  +  PSF PP  VF P+W  LY  MGY SYL+W++G  F  E  KLPL+ YG+QL  N AW+ IFFG+H I    +DI  L     AC + F  +NK A  L +PY+AWL  A A+N   W+LN   + A +
Sbjct:   16 AVILPNLGGIYNGRLTRQHLQSWYANLKFPSFKPPNSVFAPMWISLYAGMGYGSYLVWRDGGGFAGEAAKLPLIAYGTQLALNWAWTPIFFGQHNIKGGLIDIVALTAAASACGVLFYRVNKTAGLLFVPYVAWLGFATALNYAIWKLNPEKEQAPK 172
[Close]
BLAST of Translocator protein vs. Ensembl Zebrafish
Match: tspo (translocator protein [Source:ZFIN;Acc:ZDB-GENE-041010-125])

HSP 1 Score: 135.191 bits (339), Expect = 2.313e-39
Identity = 70/153 (45.75%), Postives = 97/153 (63.40%), Query Frame = 1 
Query:   73 AIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSAS 528
            A+P +  +   IITR EVKTWY T+ KPS+ PP   F  VW+ LY  MGY SYL+WKE G FT +  +PL LYG QL  N AW+ IFFG HKI  A +++ L+   V A  +++ PI++ A+ L++PY+AWL +A ++N   W+ N   K   
Sbjct:   10 ALPHVGGIFGGIITRREVKTWYSTLNKPSWRPPNAAFPVVWTTLYTGMGYGSYLVWKELGGFTQDAMVPLGLYGLQLALNWAWTPIFFGAHKIQLALIELLLMSGTVAATMVSWYPISRTATLLMVPYMAWLCVATSLNYCIWRDNPEPKKED 162
[Close]
BLAST of Translocator protein vs. Ensembl Zebrafish
Match: tspo (translocator protein [Source:ZFIN;Acc:ZDB-GENE-041010-125])

HSP 1 Score: 135.191 bits (339), Expect = 2.313e-39
Identity = 70/153 (45.75%), Postives = 97/153 (63.40%), Query Frame = 1 
Query:   73 AIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSAS 528
            A+P +  +   IITR EVKTWY T+ KPS+ PP   F  VW+ LY  MGY SYL+WKE G FT +  +PL LYG QL  N AW+ IFFG HKI  A +++ L+   V A  +++ PI++ A+ L++PY+AWL +A ++N   W+ N   K   
Sbjct:   10 ALPHVGGIFGGIITRREVKTWYSTLNKPSWRPPNAAFPVVWTTLYTGMGYGSYLVWKELGGFTQDAMVPLGLYGLQLALNWAWTPIFFGAHKIQLALIELLLMSGTVAATMVSWYPISRTATLLMVPYMAWLCVATSLNYCIWRDNPEPKKED 162
[Close]
BLAST of Translocator protein vs. Ensembl Xenopus
Match: dlc1 (DLC1 Rho GTPase activating protein [Source:Xenbase;Acc:XB-GENE-482055])

HSP 1 Score: 149.058 bits (375), Expect = 3.572e-44
Identity = 77/152 (50.66%), Postives = 103/152 (67.76%), Query Frame = 1 
Query:   76 IPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSAS 528
            +P +  +   +ITR EVKTWY T++KPS+ PP ++FGPVW+ LY +MGY SYLI+KE G       +PL LY SQL  N AW+ IFFG HKIGW  VD+ LL+    A  I++ PI++ A+ L++PY+AWLTLA A+N R W+ NK     S
Sbjct:   13 LPHVGGIAGGLITRQEVKTWYTTLVKPSWRPPNWMFGPVWTTLYTSMGYGSYLIYKELGGLNENAVVPLGLYASQLALNWAWTPIFFGAHKIGWGLVDLLLLWGAAAATTISWYPISRPAAYLMLPYLAWLTLASALNYRIWRDNKDKSDLS 164
[Close]
BLAST of Translocator protein vs. Ensembl Xenopus
Match: dlc1 (DLC1 Rho GTPase activating protein [Source:Xenbase;Acc:XB-GENE-482055])

HSP 1 Score: 148.288 bits (373), Expect = 1.082e-43
Identity = 76/150 (50.67%), Postives = 102/150 (68.00%), Query Frame = 1 
Query:   76 IPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKS 522
            +P +  +   +ITR EVKTWY T++KPS+ PP ++FGPVW+ LY +MGY SYLI+KE G       +PL LY SQL  N AW+ IFFG HKIGW  VD+ LL+    A  I++ PI++ A+ L++PY+AWLTLA A+N R W+ NK    
Sbjct:   62 LPHVGGIAGGLITRQEVKTWYTTLVKPSWRPPNWMFGPVWTTLYTSMGYGSYLIYKELGGLNENAVVPLGLYASQLALNWAWTPIFFGAHKIGWGLVDLLLLWGAAAATTISWYPISRPAAYLMLPYLAWLTLASALNYRIWRDNKDKSE 211
[Close]
BLAST of Translocator protein vs. Ensembl Xenopus
Match: dlc1 (DLC1 Rho GTPase activating protein [Source:Xenbase;Acc:XB-GENE-482055])

HSP 1 Score: 149.443 bits (376), Expect = 1.123e-43
Identity = 77/152 (50.66%), Postives = 103/152 (67.76%), Query Frame = 1 
Query:   76 IPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSAS 528
            +P +  +   +ITR EVKTWY T++KPS+ PP ++FGPVW+ LY +MGY SYLI+KE G       +PL LY SQL  N AW+ IFFG HKIGW  VD+ LL+    A  I++ PI++ A+ L++PY+AWLTLA A+N R W+ NK     S
Sbjct:   62 LPHVGGIAGGLITRQEVKTWYTTLVKPSWRPPNWMFGPVWTTLYTSMGYGSYLIYKELGGLNENAVVPLGLYASQLALNWAWTPIFFGAHKIGWGLVDLLLLWGAAAATTISWYPISRPAAYLMLPYLAWLTLASALNYRIWRDNKDKSDLS 213
[Close]
BLAST of Translocator protein vs. Ensembl Mouse
Match: Tspo (translocator protein [Source:MGI Symbol;Acc:MGI:88222])

HSP 1 Score: 115.931 bits (289), Expect = 8.894e-32
Identity = 57/153 (37.25%), Postives = 83/153 (54.25%), Query Frame = 1 
Query:   76 IPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSASE 531
            +P +     +   R E   WY ++ KPS+ PP++   P+W  LY  MGY SY++WKE G FT +  +PL LY  QL  N AW  IFFG  ++GWA  D+ L+     A  + +  ++  A+ LL PY+AWL  A  +N   W+ N   +  S 
Sbjct:   14 VPSLGGFMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIVWKELGGFTEDAMVPLGLYTGQLALNWAWPPIFFGARQMGWALADLLLVSGVATATTLAWHRVSPPAARLLYPYLAWLAFATVLNYYVWRDNSGRRGGSR 166
[Close]
BLAST of Translocator protein vs. Ensembl Mouse
Match: Tspo (translocator protein [Source:MGI Symbol;Acc:MGI:88222])

HSP 1 Score: 80.1073 bits (196), Expect = 7.806e-19
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:   76 IPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFG 336
            +P +     +   R E   WY ++ KPS+ PP++   P+W  LY  MGY SY++WKE G FT +  +PL LY  QL  N AW  IFFG
Sbjct:   14 VPSLGGFMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIVWKELGGFTEDAMVPLGLYTGQLALNWAWPPIFFG 101
[Close]
BLAST of Translocator protein vs. Ensembl Mouse
Match: Tspo2 (translocator protein 2 [Source:MGI Symbol;Acc:MGI:1917276])

HSP 1 Score: 53.1434 bits (126), Expect = 2.293e-8
Identity = 56/146 (38.36%), Postives = 75/146 (51.37%), Query Frame = 1 
Query:   70 IAIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE--GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQ 501
            I I  +I+ PSS         W          PP  V   VW  +Y  MGY+SYL+WKE  G F     LPL LY  QL  +  + ++F      G A +D+ LLY  V +    ++PINK A+ LL+PY+AWLT+  AI  R W+
Sbjct:   17 ILICMLIHQPSSRCEDERKLPW---------CPPHKVILLVWVTIYSVMGYASYLVWKELGGGFRWPLALPLGLYSFQLALSWTFLVLFLAADSPGLALLDLLLLYGLVASLVFIWQPINKLAALLLLPYLAWLTVTTAITYRLWR 153
[Close]
BLAST of Translocator protein vs. Ensembl Mouse
Match: Tspo2 (translocator protein 2 [Source:MGI Symbol;Acc:MGI:1917276])

HSP 1 Score: 53.1434 bits (126), Expect = 2.293e-8
Identity = 56/146 (38.36%), Postives = 75/146 (51.37%), Query Frame = 1 
Query:   70 IAIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE--GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQ 501
            I I  +I+ PSS         W          PP  V   VW  +Y  MGY+SYL+WKE  G F     LPL LY  QL  +  + ++F      G A +D+ LLY  V +    ++PINK A+ LL+PY+AWLT+  AI  R W+
Sbjct:   17 ILICMLIHQPSSRCEDERKLPW---------CPPHKVILLVWVTIYSVMGYASYLVWKELGGGFRWPLALPLGLYSFQLALSWTFLVLFLAADSPGLALLDLLLLYGLVASLVFIWQPINKLAALLLLPYLAWLTVTTAITYRLWR 153
[Close]
BLAST of Translocator protein vs. UniProt/SwissProt
Match: sp|P30535|TSPO_BOVIN (Translocator protein OS=Bos taurus OX=9913 GN=TSPO PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.784e-33
Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = 1 
Query:  112 TRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSASE 531
            TR E   WY ++ KP + PP+++  P+W  LY  MGY SY+IWKE G F+ E  +PL LY  QL  N AW  +FFG  ++GWA VD+ L      A  + +  ++  A+ LL PY+AWL  AG +N R WQ N+  +S   
Sbjct:   26 TRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSYMIWKELGGFSKEAVVPLGLYAGQLALNWAWPPLFFGTRQMGWALVDLLLTGGMAAATAMAWHQVSPPAACLLYPYLAWLAFAGMLNYRMWQDNQVRRSGRR 166
[Close]
BLAST of Translocator protein vs. UniProt/SwissProt
Match: sp|Q9GMC9|TSPO_SHEEP (Translocator protein OS=Ovis aries OX=9940 GN=TSPO PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.136e-33
Identity = 60/140 (42.86%), Postives = 82/140 (58.57%), Query Frame = 1 
Query:  115 RNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSASE 531
            R E   WY ++ KP + PP+++  P+W  LY  MGY SYLIWKE G F+ E  +PL LY  QL  N AW  +FFG  ++GWA VD+ L      A  + +R ++  A+ LL PY+AWL  A  +N R WQ N+  +S   
Sbjct:   27 RGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSYLIWKELGGFSKEAVVPLGLYAGQLALNWAWPPLFFGARQMGWAFVDLLLTGGMAAATAMAWRQVSPPAACLLYPYLAWLAFAAMLNYRMWQDNQGRRSGRR 166
[Close]
BLAST of Translocator protein vs. UniProt/SwissProt
Match: sp|P16257|TSPO_RAT (Translocator protein OS=Rattus norvegicus OX=10116 GN=Tspo PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.040e-32
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 1 
Query:   76 IPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSASE 531
            +P +     +   R E   WY ++ KPS+ PP++   P+W  LY  MGY SY+IWKE G FT E  +PL LY  QL  N AW  IFFG  ++GWA VD+ L+     A  + +  ++  A+ LL PY+AWL  A  +N   W+ N   +  S 
Sbjct:   14 VPSLGGFMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIIWKELGGFTEEAMVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLMLVSGVATATTLAWHRVSPPAARLLYPYLAWLAFATMLNYYVWRDNSGRRGGSR 166
[Close]
BLAST of Translocator protein vs. UniProt/SwissProt
Match: sp|P50637|TSPO_MOUSE (Translocator protein OS=Mus musculus OX=10090 GN=Tspo PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.222e-31
Identity = 57/153 (37.25%), Postives = 83/153 (54.25%), Query Frame = 1 
Query:   76 IPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSASE 531
            +P +     +   R E   WY ++ KPS+ PP++   P+W  LY  MGY SY++WKE G FT +  +PL LY  QL  N AW  IFFG  ++GWA  D+ L+     A  + +  ++  A+ LL PY+AWL  A  +N   W+ N   +  S 
Sbjct:   14 VPSLGGFMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIVWKELGGFTEDAMVPLGLYTGQLALNWAWPPIFFGARQMGWALADLLLVSGVATATTLAWHRVSPPAARLLYPYLAWLAFATVLNYYVWRDNSGRRGGSR 166
[Close]
BLAST of Translocator protein vs. UniProt/SwissProt
Match: sp|P30536|TSPO_HUMAN (Translocator protein OS=Homo sapiens OX=9606 GN=TSPO PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 2.070e-29
Identity = 59/138 (42.75%), Postives = 77/138 (55.80%), Query Frame = 1 
Query:  100 SSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNK 510
             S     E   WY  + KPS+ PP +V GPVW  LY  MGY SYL+WKE G FT +  +PL LY  QL  N AW  IFFG  ++GWA VD+ L+     A  + +  ++  A+ LL PY+AWL     +N   W+ N 
Sbjct:   22 GSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNH 159
[Close]
BLAST of Translocator protein vs. TrEMBL
Match: A0A1S4EFU9 (translocator protein isoform X1 OS=Diaphorina citri OX=121845 GN=LOC103512545 PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.583e-45
Identity = 77/156 (49.36%), Postives = 108/156 (69.23%), Query Frame = 1 
Query:   67 AIAIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKEGA-FTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSASE 531
            AI +P +  + SS++ RNE+KTWY T+ +PS+ PP Y+FGPVW+ LY  MGY+SYL+W++G  F    K+PL LYG+QL  N AWS IFFG HK+ WA  +IS+L++ V A    F  +NK A  L++PY+AWLTLA A+N   W+ N ++ +  E
Sbjct:    9 AILLPNLGGITSSLLVRNEIKTWYETLKRPSWRPPNYLFGPVWTALYCGMGYASYLVWRDGGGFLGPAKIPLALYGTQLALNWAWSPIFFGLHKLDWALGEISVLWVTVAASGYKFHEVNKTAGYLMVPYLAWLTLATALNYVIWRDNPKSIAEKE 164
[Close]
BLAST of Translocator protein vs. TrEMBL
Match: A7S6F6 (Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g167042 PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.721e-45
Identity = 78/148 (52.70%), Postives = 102/148 (68.92%), Query Frame = 1 
Query:   67 AIAIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKEGA-FTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLN 507
            A   P I  +  S+ITR EVKTWY  + KPS+ PP + FGPVW+ LY  MGYSSYL+WKEG    S TKLPL+LYGSQ++ N AW+ +FFG HK+G A V+I  L+  V  C  TF PI+K A+ L++PY+AW++LA  +N   W+ N
Sbjct:    9 ACVFPHIGGIAGSVITRKEVKTWYEDLDKPSWRPPNWAFGPVWTSLYTAMGYSSYLVWKEGGGINSTTKLPLILYGSQIVLNWAWTPLFFGAHKMGAAFVEILFLWGTVAGCIYTFYPISKLAAGLMVPYLAWVSLASCLNYSIWKRN 156
[Close]
BLAST of Translocator protein vs. TrEMBL
Match: Q8AVD5 (Bzrp-prov protein OS=Xenopus laevis OX=8355 GN=tspo PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.435e-42
Identity = 72/152 (47.37%), Postives = 103/152 (67.76%), Query Frame = 1 
Query:   76 IPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSAS 528
            +P +  +   +ITR EVKTWY T++KPS+ PP ++FGPVW+ LY +MGY SYLI+KE G    +  +PL LY  QL  N AW+ IFFG HKIGW  VD+  L+    A  +++ PI+++A+ L++PY+AWLTLA A+N   W+ NK+   + 
Sbjct:   13 LPHVGGIVGGLITRKEVKTWYTTLVKPSWRPPNWMFGPVWTTLYTSMGYGSYLIYKELGGLNEKAVVPLGLYAGQLALNWAWTPIFFGAHKIGWGLVDLVFLWGTAVATTLSWHPISRSAAYLMLPYLAWLTLASALNYCIWRDNKKEDKSE 164
[Close]
BLAST of Translocator protein vs. TrEMBL
Match: V4A1Y9 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_210696 PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.385e-42
Identity = 70/162 (43.21%), Postives = 104/162 (64.20%), Query Frame = 1 
Query:   40 MSDLVNKSIAIAIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKEGA-FTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKS 522
            MS+ +  + AI +P +  +    IT+  +  WY  + +PS+ PP Y+F PVW+ LY +MGY+SYL+W++G  F  + KLPL L+G+QL  N AW+ IFFG  K+G A ++I +L+  V A  ++F P+N  AS LLIPY+ WLTLA A+    W+ NK  + 
Sbjct:    1 MSEYIRPAFAIILPNLGGIAGGFITKKSIPDWYENLHRPSWRPPNYLFAPVWTFLYSSMGYASYLVWRDGGGFDGDAKLPLALFGTQLALNWAWTPIFFGLRKMGLATIEIGVLWGTVAATIVSFHPVNTTASYLLIPYLGWLTLASALTFNIWKNNKDRRD 162
[Close]
BLAST of Translocator protein vs. TrEMBL
Match: B0BM41 (LOC100144961 protein OS=Xenopus tropicalis OX=8364 GN=tspo PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.282e-41
Identity = 79/153 (51.63%), Postives = 104/153 (67.97%), Query Frame = 1 
Query:   76 IPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSASE 531
            +P +  +   +ITR EVKTWY T++KPS+ PP ++FGPVW+ LY +MGY SYLI+KE G       +PL LY SQL  N AW+ IFFG HKIGW  VD+ LL+    A  I++ PI++ A+ L++PY+AWLTLA A+N R W   K NK  SE
Sbjct:   13 LPHVGGIAGGLITRQEVKTWYTTLVKPSWRPPNWMFGPVWTTLYTSMGYGSYLIYKELGGLNENAVVPLGLYASQLALNWAWTPIFFGAHKIGWGLVDLLLLWGAAAATTISWYPISRPAAYLMLPYLAWLTLASALNYRIW---KDNKDKSE 162
[Close]
BLAST of Translocator protein vs. Ensembl Cavefish
Match: tspo (translocator protein [Source:ZFIN;Acc:ZDB-GENE-041010-125])

HSP 1 Score: 134.035 bits (336), Expect = 7.128e-39
Identity = 69/151 (45.70%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:   73 AIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKS 522
            A+P +  +    ITR EVKTWY T+ KPS+ PP   F  VW+ LY  MGY SYL+WKE G F   + +PL LYG QL  N AW+ IFFG HKI  A +++ +L   V A  +++ P+N+ A+ L++PY+AWL LA ++N   W+ N   K 
Sbjct:   19 ALPHVGGLYGGFITRKEVKTWYTTLNKPSWRPPNAAFPVVWTTLYTGMGYGSYLVWKELGGFNENSLVPLGLYGLQLALNWAWTPIFFGAHKIKLALIELVMLSGTVAATMVSWYPVNRTATLLMVPYMAWLCLATSLNYCIWRDNPETKK 169
[Close]
BLAST of Translocator protein vs. Ensembl Nematostella
Match: EDO40711 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S6F6])

HSP 1 Score: 158.303 bits (399), Expect = 7.911e-49
Identity = 78/148 (52.70%), Postives = 102/148 (68.92%), Query Frame = 1 
Query:   67 AIAIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKEGA-FTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLN 507
            A   P I  +  S+ITR EVKTWY  + KPS+ PP + FGPVW+ LY  MGYSSYL+WKEG    S TKLPL+LYGSQ++ N AW+ +FFG HK+G A V+I  L+  V  C  TF PI+K A+ L++PY+AW++LA  +N   W+ N
Sbjct:    9 ACVFPHIGGIAGSVITRKEVKTWYEDLDKPSWRPPNWAFGPVWTSLYTAMGYSSYLVWKEGGGINSTTKLPLILYGSQIVLNWAWTPLFFGAHKMGAAFVEILFLWGTVAGCIYTFYPISKLAAGLMVPYLAWVSLASCLNYSIWKRN 156
[Close]
BLAST of Translocator protein vs. Ensembl Nematostella
Match: EDO27659 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T8M6])

HSP 1 Score: 93.9745 bits (232), Expect = 6.116e-24
Identity = 60/159 (37.74%), Postives = 92/159 (57.86%), Query Frame = 1 
Query:   34 FTMSDLVNKSIAIAIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKEGAFTSE-TKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLN 507
            F MS  +     +AI   +   SS++T++ ++TWY TI KP F PP +VF PVW++L+  MG +  L+W +     E  K  L L+  QLL N+ WS IFF    I  A+++I LL L ++  ++ F+ I+  AS LLIPY+ W++ A  + +    LN
Sbjct:    2 FRMSKSLKILYVVAICLAVGYLSSLVTQSSIETWYPTIKKPIFNPPNWVFAPVWTLLFIMMGIAGGLVWDKLEQNRELVKKGLFLFTIQLLLNAFWSYIFFSLKNILLASIEIILLLLIIYETYVVFKKIDSMASKLLIPYLFWVSFATILTVTICFLN 160
[Close]
BLAST of Translocator protein vs. Ensembl Medaka
Match: tspo (translocator protein [Source:NCBI gene;Acc:101165869])

HSP 1 Score: 134.035 bits (336), Expect = 4.728e-39
Identity = 72/151 (47.68%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:   73 AIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKS 522
            A+P +  +    ITR +VKTWY T+ KPS+ PP   F  VW+ LY +MGY SYLIWKE G FT +  +PL LYG+QL  N AW+ IFFG HK+  A ++I LL   V A   ++ PI+  A+ LL PY+AWL LA ++N   W+ N   K 
Sbjct:   10 ALPHLGGLYGGFITRKQVKTWYPTLKKPSWRPPNAAFPVVWTCLYTSMGYGSYLIWKELGGFTQDALVPLGLYGTQLALNWAWTPIFFGAHKLKLALMEIVLLTGTVGATMASWYPISSTATLLLAPYLAWLCLATSLNYCIWRDNAEEKE 160
[Close]
BLAST of Translocator protein vs. Ensembl Medaka
Match: tspo (translocator protein [Source:NCBI gene;Acc:101165869])

HSP 1 Score: 123.635 bits (309), Expect = 4.828e-35
Identity = 67/134 (50.00%), Postives = 87/134 (64.93%), Query Frame = 1 
Query:   73 AIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTL 471
            A+P +  +    ITR +VKTWY T+ KPS+ PP   F  VW+ LY +MGY SYLIWKE G FT +  +PL LYG+QL  N AW+ IFFG HK+  A ++I LL   V A   ++ PI+  A+ LL PY+AWL L
Sbjct:   10 ALPHLGGLYGGFITRKQVKTWYPTLKKPSWRPPNAAFPVVWTCLYTSMGYGSYLIWKELGGFTQDALVPLGLYGTQLALNWAWTPIFFGAHKLKLALMEIVLLTGTVGATMASWYPISSTATLLLAPYLAWLCL 143
[Close]
BLAST of Translocator protein vs. Ensembl Medaka
Match: tspo (translocator protein [Source:NCBI gene;Acc:101165869])

HSP 1 Score: 102.449 bits (254), Expect = 4.876e-27
Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = 1 
Query:  178 VFGPVWSMLYGTMGYSSYLIWKE-GAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKS 522
             F  VW+ LY +MGY SYLIWKE G FT +  +PL LYG+QL  N AW+ IFFG HK+  A ++I LL   V A   ++ PI+  A+ LL PY+AWL LA ++N   W+ N   K 
Sbjct:   20 AFPVVWTCLYTSMGYGSYLIWKELGGFTQDALVPLGLYGTQLALNWAWTPIFFGAHKLKLALMEIVLLTGTVGATMASWYPISSTATLLLAPYLAWLCLATSLNYCIWRDNAEEKE 135
[Close]
BLAST of Translocator protein vs. Planmine SMEST
Match: SMESG000002991.1 (SMESG000002991.1)

HSP 1 Score: 329.717 bits (844), Expect = 4.463e-116
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 
Query:   40 MSDLVNKSIAIAIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKEGAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSASE 531
            MSDLVNKSIAIAIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKEGAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSASE
Sbjct:    1 MSDLVNKSIAIAIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKEGAFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNKRNKSASE 164
[Close]
BLAST of Translocator protein vs. Planmine SMEST
Match: SMESG000079158.1 (SMESG000079158.1)

HSP 1 Score: 173.711 bits (439), Expect = 1.258e-54
Identity = 85/158 (53.80%), Postives = 109/158 (68.99%), Query Frame = 1 
Query:   40 MSDLVNKSIAIAIPFIINVPSSIITRNEVKTWYMTIIKPSFTPPKYVFGPVWSMLYGTMGYSSYLIWKEG-AFTSETKLPLLLYGSQLLFNSAWSLIFFGRHKIGWAAVDISLLYLNVWACFITFRPINKNASNLLIPYIAWLTLAGAINIRTWQLNK 510
            MSD    + AI+IP      +SI  +     W+ T+ +P F+PP YVF P+W MLY +MGYSSY++WKEG  FT +T LP  LYG QL+ N AW  IFF +H+IGWA V+IS+LY+N   C + FRPI+  ASNLLIPYI+WLTLA A+N R W LN+
Sbjct:    1 MSDFFKAAFAISIPLGGCFINSIFVKPLEDKWFQTLKRPCFSPPGYVFAPIWIMLYTSMGYSSYILWKEGNGFTDKTILPFALYGFQLILNLAWPTIFFKKHQIGWAFVNISVLYVNALLCILKFRPISVKASNLLIPYISWLTLASALNFRLWMLNR 158
The following BLAST results are available for this feature:
BLAST of Translocator protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
TSPO4.311e-3042.75translocator protein [Source:HGNC Symbol;Acc:HGNC:... [more]
TSPO4.311e-3042.75translocator protein [Source:HGNC Symbol;Acc:HGNC:... [more]
TSPO4.311e-3042.75translocator protein [Source:HGNC Symbol;Acc:HGNC:... [more]
TSPO3.318e-2150.00translocator protein [Source:HGNC Symbol;Acc:HGNC:... [more]
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BLAST of Translocator protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3
Match NameE-valueIdentityDescription
C41G7.91.813e-627.12pep chromosome:WBcel235:I:9515002:9515859:-1 gene:... [more]
C41G7.91.813e-627.12pep chromosome:WBcel235:I:9515002:9515839:-1 gene:... [more]
C41G7.93.909e-627.12pep chromosome:WBcel235:I:9515002:9516776:-1 gene:... [more]
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BLAST of Translocator protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Tspo6.348e-3842.04gene:FBgn0031263 transcript:FBtr0078066[more]
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BLAST of Translocator protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
tspo2.313e-3945.75translocator protein [Source:ZFIN;Acc:ZDB-GENE-041... [more]
tspo2.313e-3945.75translocator protein [Source:ZFIN;Acc:ZDB-GENE-041... [more]
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BLAST of Translocator protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
dlc13.572e-4450.66DLC1 Rho GTPase activating protein [Source:Xenbase... [more]
dlc11.082e-4350.67DLC1 Rho GTPase activating protein [Source:Xenbase... [more]
dlc11.123e-4350.66DLC1 Rho GTPase activating protein [Source:Xenbase... [more]
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BLAST of Translocator protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Tspo8.894e-3237.25translocator protein [Source:MGI Symbol;Acc:MGI:88... [more]
Tspo7.806e-1943.18translocator protein [Source:MGI Symbol;Acc:MGI:88... [more]
Tspo22.293e-838.36translocator protein 2 [Source:MGI Symbol;Acc:MGI:... [more]
Tspo22.293e-838.36translocator protein 2 [Source:MGI Symbol;Acc:MGI:... [more]
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BLAST of Translocator protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P30535|TSPO_BOVIN2.784e-3342.55Translocator protein OS=Bos taurus OX=9913 GN=TSPO... [more]
sp|Q9GMC9|TSPO_SHEEP8.136e-3342.86Translocator protein OS=Ovis aries OX=9940 GN=TSPO... [more]
sp|P16257|TSPO_RAT3.040e-3239.22Translocator protein OS=Rattus norvegicus OX=10116... [more]
sp|P50637|TSPO_MOUSE6.222e-3137.25Translocator protein OS=Mus musculus OX=10090 GN=T... [more]
sp|P30536|TSPO_HUMAN2.070e-2942.75Translocator protein OS=Homo sapiens OX=9606 GN=TS... [more]
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BLAST of Translocator protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1S4EFU93.583e-4549.36translocator protein isoform X1 OS=Diaphorina citr... [more]
A7S6F65.721e-4552.70Predicted protein OS=Nematostella vectensis OX=453... [more]
Q8AVD52.435e-4247.37Bzrp-prov protein OS=Xenopus laevis OX=8355 GN=tsp... [more]
V4A1Y94.385e-4243.21Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
B0BM413.282e-4151.63LOC100144961 protein OS=Xenopus tropicalis OX=8364... [more]
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BLAST of Translocator protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
tspo7.128e-3945.70translocator protein [Source:ZFIN;Acc:ZDB-GENE-041... [more]
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BLAST of Translocator protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Translocator protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Translocator protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO407117.911e-4952.70Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO276596.116e-2437.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Translocator protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
tspo4.728e-3947.68translocator protein [Source:NCBI gene;Acc:1011658... [more]
tspo4.828e-3550.00translocator protein [Source:NCBI gene;Acc:1011658... [more]
tspo4.876e-2748.28translocator protein [Source:NCBI gene;Acc:1011658... [more]
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BLAST of Translocator protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000002991.14.463e-116100.00SMESG000002991.1[more]
SMESG000079158.11.258e-5453.80SMESG000079158.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30019649 ID=SMED30019649|Name=Translocator protein|organism=Schmidtea mediterranea sexual|type=transcript|length=767bp
TATCATTGGTGTAAGAAAAGTCGTTCAGCTTAATTTACTATGAGTGACCT
TGTTAATAAGTCAATTGCTATCGCTATACCTTTCATTATTAATGTTCCTT
CAAGCATTATAACTCGGAATGAAGTTAAGACATGGTACATGACAATTATA
AAACCATCATTTACACCCCCAAAATATGTTTTTGGTCCAGTGTGGTCTAT
GTTATATGGAACTATGGGCTATTCTTCTTACCTTATATGGAAAGAAGGAG
CTTTTACATCCGAAACTAAATTACCACTTTTATTATATGGATCACAATTA
CTTTTTAATTCTGCTTGGTCGTTAATATTTTTTGGTCGACATAAGATAGG
ATGGGCTGCAGTTGACATTTCTCTTTTGTATTTGAACGTTTGGGCATGTT
TTATCACATTCCGACCGATAAACAAGAACGCATCGAATTTGTTAATACCT
TACATAGCTTGGCTGACACTTGCAGGTGCTATTAACATCAGAACATGGCA
ATTGAACAAGAGAAATAAATCAGCATCCGAATAGGTTCTTATTTAGGAAA
TAAGTTTTGCTTAAATTTAGATTTATAGTCGATTATTATTGGTTAGTTTC
GATTAGGCAATTTTCATGACGTCAACAATAAATATAATACGTGTGCTTGA
ACAGTTATAATCGATAATTGAAATAATATTGGCTTTCAATTTTATATTTA
TTTTTTGTACTTAGGATAAATAATTTTCATTATTGAATATATAAAGTTAT
TATTTTTATAAAAAAAA
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000101muscle cell
PLANA:0000142posterior region of the whole animal
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR004307TspO_MBR
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane