Large subunit ribosomal protein L45

Overview
NameLarge subunit ribosomal protein L45
Smed IDSMED30019639
Length (bp)1222
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Large subunit ribosomal protein L45 (SMED30019639) t-SNE clustered cells

Violin plots show distribution of expression levels for Large subunit ribosomal protein L45 (SMED30019639) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Large subunit ribosomal protein L45 (SMED30019639) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Large subunit ribosomal protein L45 (SMED30019639) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30019639

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30019639SMESG000026832.1 SmedASXL_003059SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30019639SMESG000026832.1 SmedASXL_003059SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Human
Match: MRPL45 (mitochondrial ribosomal protein L45 [Source:HGNC Symbol;Acc:HGNC:16651])

HSP 1 Score: 161.77 bits (408), Expect = 6.255e-46
Identity = 83/214 (38.79%), Postives = 132/214 (61.68%), Query Frame = 3 
Query:  300 EMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            E  ++ R+ G++      +R I+L+CT  IFD ++PPEGD ++S L+       TE    T+ + +++R+I+ +D+NF  K FP  A+DI+ +    L +  S+   L  LVTE    DM   ++ KT+  +F    +   VV +R    + +G ++GQI VR +++QT+AI+D+FGRL+YG  D P+D+LEYVVFEKQ++  Y  WR+H KIV
Sbjct:   55 EFMQHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNN--SDHDRLHTLVTEHCFPDMTWDIKYKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFEKQLTNPYGSWRMHTKIV 266
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Human
Match: MRPL45 (mitochondrial ribosomal protein L45 [Source:HGNC Symbol;Acc:HGNC:16651])

HSP 1 Score: 161.384 bits (407), Expect = 7.885e-46
Identity = 83/214 (38.79%), Postives = 132/214 (61.68%), Query Frame = 3 
Query:  300 EMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            E  ++ R+ G++      +R I+L+CT  IFD ++PPEGD ++S L+       TE    T+ + +++R+I+ +D+NF  K FP  A+DI+ +    L +  S+   L  LVTE    DM   ++ KT+  +F    +   VV +R    + +G ++GQI VR +++QT+AI+D+FGRL+YG  D P+D+LEYVVFEKQ++  Y  WR+H KIV
Sbjct:   55 EFMQHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNN--SDHDRLHTLVTEHCFPDMTWDIKYKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFEKQLTNPYGSWRMHTKIV 266
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Human
Match: MRPL45 (mitochondrial ribosomal protein L45 [Source:HGNC Symbol;Acc:HGNC:16651])

HSP 1 Score: 115.931 bits (289), Expect = 2.377e-29
Identity = 70/214 (32.71%), Postives = 106/214 (49.53%), Query Frame = 3 
Query:  300 EMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            E  ++ R+ G++      +R I+L+CT  IFD ++PPEGD ++S L+       TE    T+ + +++R+I+ +D+NF  K FP  A+DI+ +    L +  S+   L  LVTE                   HC                                 T+AI+D+FGRL+YG  D P+D+LEYVVFEKQ++  Y  WR+H KIV
Sbjct:   55 EFMQHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNN--SDHDRLHTLVTE-------------------HCF-------------------------------PTLAIYDRFGRLMYGQEDVPKDVLEYVVFEKQLTNPYGSWRMHTKIV 216
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Human
Match: MRPL45 (mitochondrial ribosomal protein L45 [Source:HGNC Symbol;Acc:HGNC:16651])

HSP 1 Score: 115.931 bits (289), Expect = 2.715e-29
Identity = 70/214 (32.71%), Postives = 106/214 (49.53%), Query Frame = 3 
Query:  300 EMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            E  ++ R+ G++      +R I+L+CT  IFD ++PPEGD ++S L+       TE    T+ + +++R+I+ +D+NF  K FP  A+DI+ +    L +  S+   L  LVTE                   HC                                 T+AI+D+FGRL+YG  D P+D+LEYVVFEKQ++  Y  WR+H KIV
Sbjct:   55 EFMQHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNN--SDHDRLHTLVTE-------------------HCF-------------------------------PTLAIYDRFGRLMYGQEDVPKDVLEYVVFEKQLTNPYGSWRMHTKIV 216
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Celegans
Match: mrpl-45 (Probable 39S ribosomal protein L45, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q95Y71])

HSP 1 Score: 93.5893 bits (231), Expect = 6.373e-21
Identity = 67/230 (29.13%), Postives = 110/230 (47.83%), Query Frame = 3 
Query:  285 KLNPSEMRENLRRIGMLTRNSFKERE--------INLSCTDVIFDQFIPPEGDGKLSILN------PSRYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRT-EPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKI 929
            +++P EMR  L + G+   N +KE +        +       I D ++PPE  G  + +N        R      +    T  +RK + F+  FD K F   AEDIY Q    L   + ++  + + +TE     M   +EN ++        +   VV++R  +     G    QI VR +++Q +A++D+FG L+ GS D  +D++EYVVFE  I+    +WR+H KI
Sbjct:   82 EMSPGEMRTELLKRGI---NPYKEAQPRVWNEAQVTFQSIYGIADPYVPPENPGSFTDVNNKFDEVKQRIQHKFYNWRMGTNRIRKKQGFEK-FDIKTFCAKAEDIYVQAHRALE--QRDKTAMYKYITEYAFAKMWPDVENGSVRFELISVLEPSRVVAVRCFDNPPKSGNDIAQITVRMHTRQKLAVYDRFGGLLLGSEDEEKDVVEYVVFENHIAVVDGEWRLHGKI 305
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Fly
Match: mRpL45 (gene:FBgn0263863 transcript:FBtr0084272)

HSP 1 Score: 174.866 bits (442), Expect = 1.271e-50
Identity = 107/296 (36.15%), Postives = 163/296 (55.07%), Query Frame = 3 
Query:  177 VREMRTRHRNARFLIMNKYQPWPKAADVKKVFEDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLIDEPLKTPN*LVSSVFDSACKIIST 1055
            VR  +T+H    F  + K +      D+  + E  + +   EMR  ++  G+L    + ER  ++SCT  IF+ ++PPEGDGK SI++ S   +  E      K+ MAVRKIR +D NF    F   A+DIY Q    +     ++  + E V+E+   +M+  +++KT+   F    + P VV  R    IT+   F Q+ VRF+SQQ +AI+D+FGRL++GS    +D+LEYVVFEK IS EY +WR+H KI+ D L +      T RLI++  + P  L  S  D+  K + +
Sbjct:   47 VRHRQTKHWKPEFKRLRKLKF--VKMDLPNLREKQEDITKEEMRSRMKERGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHM--AAKDKYKIREFVSERCYPEMMHNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSEIITKDVLEYVVFEKHISNEYGKWRLHDKIIPDWLPAKQPAPITYRLIEDAEEPPKEL--SAGDAEVKQVDS 336
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Zebrafish
Match: mrpl45 (mitochondrial ribosomal protein L45 [Source:ZFIN;Acc:ZDB-GENE-040426-1041])

HSP 1 Score: 170.244 bits (430), Expect = 2.739e-49
Identity = 89/233 (38.20%), Postives = 137/233 (58.80%), Query Frame = 3 
Query:  243 PKAADVKKVFEDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            P +A++K   +D       E  +  R  G++ R  + ER IN+SCT  I+D ++PPEGD +LS L      + TE    T  + +A+RKI+ +DS F  K+FP I + I+      L ++  N+  L  LVTE+   +M+RG   KTL   F    + P +V  R    I++G L+GQ+ VR +S+QT+AI+D+FGRL+ G  + P+D+LEY+V E+ +   Y +WR+H KIV
Sbjct:   49 PPSANIKSKTQD-------EQEKKARAAGVVVRQEYMERPINISCTAGIYDPYVPPEGDARLSTLTKEGLKQRTEQLRQTAASQLAIRKIKDYDSTFTSKEFPGIGQQIFIDAHAALTEF--NKEKLHSLVTERCYPEMVRGNRYKTLRWRFIESLEPPRLVQARCPDMISKGNLYGQVTVRMHSRQTLAIYDRFGRLMLGDEEEPRDVLEYLVMERHLVNPYGRWRLHGKIV 272
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Zebrafish
Match: mrpl45 (mitochondrial ribosomal protein L45 [Source:ZFIN;Acc:ZDB-GENE-040426-1041])

HSP 1 Score: 170.244 bits (430), Expect = 2.739e-49
Identity = 89/233 (38.20%), Postives = 137/233 (58.80%), Query Frame = 3 
Query:  243 PKAADVKKVFEDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            P +A++K   +D       E  +  R  G++ R  + ER IN+SCT  I+D ++PPEGD +LS L      + TE    T  + +A+RKI+ +DS F  K+FP I + I+      L ++  N+  L  LVTE+   +M+RG   KTL   F    + P +V  R    I++G L+GQ+ VR +S+QT+AI+D+FGRL+ G  + P+D+LEY+V E+ +   Y +WR+H KIV
Sbjct:   49 PPSANIKSKTQD-------EQEKKARAAGVVVRQEYMERPINISCTAGIYDPYVPPEGDARLSTLTKEGLKQRTEQLRQTAASQLAIRKIKDYDSTFTSKEFPGIGQQIFIDAHAALTEF--NKEKLHSLVTERCYPEMVRGNRYKTLRWRFIESLEPPRLVQARCPDMISKGNLYGQVTVRMHSRQTLAIYDRFGRLMLGDEEEPRDVLEYLVMERHLVNPYGRWRLHGKIV 272
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Zebrafish
Match: mrpl45 (mitochondrial ribosomal protein L45 [Source:ZFIN;Acc:ZDB-GENE-040426-1041])

HSP 1 Score: 170.244 bits (430), Expect = 2.739e-49
Identity = 89/233 (38.20%), Postives = 137/233 (58.80%), Query Frame = 3 
Query:  243 PKAADVKKVFEDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            P +A++K   +D       E  +  R  G++ R  + ER IN+SCT  I+D ++PPEGD +LS L      + TE    T  + +A+RKI+ +DS F  K+FP I + I+      L ++  N+  L  LVTE+   +M+RG   KTL   F    + P +V  R    I++G L+GQ+ VR +S+QT+AI+D+FGRL+ G  + P+D+LEY+V E+ +   Y +WR+H KIV
Sbjct:   49 PPSANIKSKTQD-------EQEKKARAAGVVVRQEYMERPINISCTAGIYDPYVPPEGDARLSTLTKEGLKQRTEQLRQTAASQLAIRKIKDYDSTFTSKEFPGIGQQIFIDAHAALTEF--NKEKLHSLVTERCYPEMVRGNRYKTLRWRFIESLEPPRLVQARCPDMISKGNLYGQVTVRMHSRQTLAIYDRFGRLMLGDEEEPRDVLEYLVMERHLVNPYGRWRLHGKIV 272
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Zebrafish
Match: mrpl45 (mitochondrial ribosomal protein L45 [Source:ZFIN;Acc:ZDB-GENE-040426-1041])

HSP 1 Score: 120.939 bits (302), Expect = 2.489e-31
Identity = 61/150 (40.67%), Postives = 93/150 (62.00%), Query Frame = 3 
Query:  483 TMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            T  +RKI+ +DS F  K+FP I + I+      L ++  N+  L  LVTE+   +M+RG   KTL   F    + P +V  R    I++G L+GQ+ VR +S+QT+AI+D+FGRL+ G  + P+D+LEY+V E+ +   Y +WR+H KIV
Sbjct:   65 TNQIRKIKDYDSTFTSKEFPGIGQQIFIDAHAALTEF--NKEKLHSLVTERCYPEMVRGNRYKTLRWRFIESLEPPRLVQARCPDMISKGNLYGQVTVRMHSRQTLAIYDRFGRLMLGDEEEPRDVLEYLVMERHLVNPYGRWRLHGKIV 212
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Zebrafish
Match: mrpl45 (mitochondrial ribosomal protein L45 [Source:ZFIN;Acc:ZDB-GENE-040426-1041])

HSP 1 Score: 120.939 bits (302), Expect = 2.489e-31
Identity = 61/150 (40.67%), Postives = 93/150 (62.00%), Query Frame = 3 
Query:  483 TMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            T  +RKI+ +DS F  K+FP I + I+      L ++  N+  L  LVTE+   +M+RG   KTL   F    + P +V  R    I++G L+GQ+ VR +S+QT+AI+D+FGRL+ G  + P+D+LEY+V E+ +   Y +WR+H KIV
Sbjct:   65 TNQIRKIKDYDSTFTSKEFPGIGQQIFIDAHAALTEF--NKEKLHSLVTERCYPEMVRGNRYKTLRWRFIESLEPPRLVQARCPDMISKGNLYGQVTVRMHSRQTLAIYDRFGRLMLGDEEEPRDVLEYLVMERHLVNPYGRWRLHGKIV 212
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Xenopus
Match: mrpl45 (mitochondrial ribosomal protein L45 [Source:NCBI gene;Acc:613101])

HSP 1 Score: 155.992 bits (393), Expect = 9.793e-44
Identity = 79/215 (36.74%), Postives = 132/215 (61.40%), Query Frame = 3 
Query:  297 SEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            ++M    R  G++T +   ER IN++CT  IFD +IPPEGD +LS L+     + T+    T  + +A+RK++++DS F  K FP  A++++      L  +  +E  L  LVTE+   +M+RG   +T+  +F    + P VV +R    +++G L+ Q+ VR +++Q++ I+D+FGR++ GS + P+D+LEYVVFE+ +   Y  WR+H KIV
Sbjct:   54 ADMISKARAAGVVTPHETMERPINIACTAGIFDPYIPPEGDARLSSLSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTTKTFPEKAQELFIAAHQCLTKFDRHE--LHTLVTERCYPEMVRGNRYRTIQWSFVESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQSLTIYDRFGRVMCGSEE-PRDVLEYVVFERHMVNPYGTWRMHGKIV 265
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Xenopus
Match: mrpl45 (mitochondrial ribosomal protein L45 [Source:NCBI gene;Acc:613101])

HSP 1 Score: 155.606 bits (392), Expect = 1.258e-43
Identity = 79/215 (36.74%), Postives = 132/215 (61.40%), Query Frame = 3 
Query:  297 SEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            ++M    R  G++T +   ER IN++CT  IFD +IPPEGD +LS L+     + T+    T  + +A+RK++++DS F  K FP  A++++      L  +  +E  L  LVTE+   +M+RG   +T+  +F    + P VV +R    +++G L+ Q+ VR +++Q++ I+D+FGR++ GS + P+D+LEYVVFE+ +   Y  WR+H KIV
Sbjct:   51 ADMISKARAAGVVTPHETMERPINIACTAGIFDPYIPPEGDARLSSLSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTTKTFPEKAQELFIAAHQCLTKFDRHE--LHTLVTERCYPEMVRGNRYRTIQWSFVESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQSLTIYDRFGRVMCGSEE-PRDVLEYVVFERHMVNPYGTWRMHGKIV 262
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Xenopus
Match: mrpl45 (mitochondrial ribosomal protein L45 [Source:NCBI gene;Acc:613101])

HSP 1 Score: 155.606 bits (392), Expect = 3.760e-43
Identity = 79/215 (36.74%), Postives = 132/215 (61.40%), Query Frame = 3 
Query:  297 SEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            ++M    R  G++T +   ER IN++CT  IFD +IPPEGD +LS L+     + T+    T  + +A+RK++++DS F  K FP  A++++      L  +  +E  L  LVTE+   +M+RG   +T+  +F    + P VV +R    +++G L+ Q+ VR +++Q++ I+D+FGR++ GS + P+D+LEYVVFE+ +   Y  WR+H KIV
Sbjct:   94 ADMISKARAAGVVTPHETMERPINIACTAGIFDPYIPPEGDARLSSLSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTTKTFPEKAQELFIAAHQCLTKFDRHE--LHTLVTERCYPEMVRGNRYRTIQWSFVESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQSLTIYDRFGRVMCGSEE-PRDVLEYVVFERHMVNPYGTWRMHGKIV 305
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Mouse
Match: Mrpl45 (mitochondrial ribosomal protein L45 [Source:MGI Symbol;Acc:MGI:1914286])

HSP 1 Score: 166.392 bits (420), Expect = 8.335e-48
Identity = 88/214 (41.12%), Postives = 130/214 (60.75%), Query Frame = 3 
Query:  300 EMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIKNT---MAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            E  E  R+ G++      ER I+L+CT  IFD ++PPEGD ++S L+    T+ T    KN    +A+RKIR+FD+NF  K FP  A+DI+ +    L +  S+   L  LVTE    DM+  L+ KT+   F    +   VV +R    + +  ++GQ+ VR +++QT+AI+D+FGRL+YG  D P+D+LEYVVFE+ +   Y  WR+HAKIV
Sbjct:   55 EFLEYARKAGLVIPQERLERPIHLACTAGIFDPYVPPEGDARMSSLSKEGLTQRTERLRKNAASQLAIRKIREFDANFKTKDFPEKAKDIFIEAHLCLNN--SDHDRLHTLVTEHCFPDMVWDLKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLMNPYGSWRMHAKIV 266
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Mouse
Match: Mrpl45 (mitochondrial ribosomal protein L45 [Source:MGI Symbol;Acc:MGI:1914286])

HSP 1 Score: 49.6766 bits (117), Expect = 4.475e-7
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 3 
Query:  300 EMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIKNTMA 491
            E  E  R+ G++      ER I+L+CT  IFD ++PPEGD ++S L+    T+ T    KN  +
Sbjct:   44 EFLEYARKAGLVIPQERLERPIHLACTAGIFDPYVPPEGDARMSSLSKEGLTQRTERLRKNAAS 107
[Close]
BLAST of Large subunit ribosomal protein L45 vs. UniProt/SwissProt
Match: sp|Q9VCX3|RM45_DROME (Probable 39S ribosomal protein L45, mitochondrial OS=Drosophila melanogaster OX=7227 GN=mRpL45 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.274e-49
Identity = 107/296 (36.15%), Postives = 163/296 (55.07%), Query Frame = 3 
Query:  177 VREMRTRHRNARFLIMNKYQPWPKAADVKKVFEDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLIDEPLKTPN*LVSSVFDSACKIIST 1055
            VR  +T+H    F  + K +      D+  + E  + +   EMR  ++  G+L    + ER  ++SCT  IF+ ++PPEGDGK SI++ S   +  E      K+ MAVRKIR +D NF    F   A+DIY Q    +     ++  + E V+E+   +M+  +++KT+   F    + P VV  R    IT+   F Q+ VRF+SQQ +AI+D+FGRL++GS    +D+LEYVVFEK IS EY +WR+H KI+ D L +      T RLI++  + P  L  S  D+  K + +
Sbjct:   47 VRHRQTKHWKPEFKRLRKLKF--VKMDLPNLREKQEDITKEEMRSRMKERGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHM--AAKDKYKIREFVSERCYPEMMHNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSEIITKDVLEYVVFEKHISNEYGKWRLHDKIIPDWLPAKQPAPITYRLIEDAEEPPKEL--SAGDAEVKQVDS 336
[Close]
BLAST of Large subunit ribosomal protein L45 vs. UniProt/SwissProt
Match: sp|Q9D0Q7|RM45_MOUSE (39S ribosomal protein L45, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl45 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 5.831e-47
Identity = 88/214 (41.12%), Postives = 130/214 (60.75%), Query Frame = 3 
Query:  300 EMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIKNT---MAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            E  E  R+ G++      ER I+L+CT  IFD ++PPEGD ++S L+    T+ T    KN    +A+RKIR+FD+NF  K FP  A+DI+ +    L +  S+   L  LVTE    DM+  L+ KT+   F    +   VV +R    + +  ++GQ+ VR +++QT+AI+D+FGRL+YG  D P+D+LEYVVFE+ +   Y  WR+HAKIV
Sbjct:   55 EFLEYARKAGLVIPQERLERPIHLACTAGIFDPYVPPEGDARMSSLSKEGLTQRTERLRKNAASQLAIRKIREFDANFKTKDFPEKAKDIFIEAHLCLNN--SDHDRLHTLVTEHCFPDMVWDLKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLMNPYGSWRMHAKIV 266
[Close]
BLAST of Large subunit ribosomal protein L45 vs. UniProt/SwissProt
Match: sp|Q3T142|RM45_BOVIN (39S ribosomal protein L45, mitochondrial OS=Bos taurus OX=9913 GN=MRPL45 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.070e-45
Identity = 83/214 (38.79%), Postives = 131/214 (61.21%), Query Frame = 3 
Query:  300 EMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNP---SRYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            E  E  R+ G++      ER I+L+CT  IFD ++PPEGD ++S L+    ++ TE     + + +++R+I++ D NF  K FP  A+DI+ +    L +  S+   L  LVTE    DM+  ++ KT+  +F    + P VV +R    +T+   +GQ+ VR +++QT+AI+D+FGRL+YG  D P+D+LEYVVFEK ++  Y  WR+H KIV
Sbjct:   55 EFTEYARKAGLVIPQESLERPIHLACTASIFDAYVPPEGDARVSSLSKEGLAQRTERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNN--SDHDRLHTLVTENCFPDMVWDIKYKTVSWSFVESLEPPQVVQVRCSSLVTKSNTYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLANPYGSWRMHGKIV 266
[Close]
BLAST of Large subunit ribosomal protein L45 vs. UniProt/SwissProt
Match: sp|Q9BRJ2|RM45_HUMAN (39S ribosomal protein L45, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL45 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.787e-45
Identity = 83/214 (38.79%), Postives = 132/214 (61.68%), Query Frame = 3 
Query:  300 EMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            E  ++ R+ G++      +R I+L+CT  IFD ++PPEGD ++S L+       TE    T+ + +++R+I+ +D+NF  K FP  A+DI+ +    L +  S+   L  LVTE    DM   ++ KT+  +F    +   VV +R    + +G ++GQI VR +++QT+AI+D+FGRL+YG  D P+D+LEYVVFEKQ++  Y  WR+H KIV
Sbjct:   55 EFMQHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNN--SDHDRLHTLVTEHCFPDMTWDIKYKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFEKQLTNPYGSWRMHTKIV 266
[Close]
BLAST of Large subunit ribosomal protein L45 vs. UniProt/SwissProt
Match: sp|Q4QQQ4|RM45_XENTR (39S ribosomal protein L45, mitochondrial OS=Xenopus tropicalis OX=8364 GN=mrpl45 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.188e-43
Identity = 79/215 (36.74%), Postives = 132/215 (61.40%), Query Frame = 3 
Query:  297 SEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            ++M    R  G++T +   ER IN++CT  IFD +IPPEGD +LS L+     + T+    T  + +A+RK++++DS F  K FP  A++++      L  +  +E  L  LVTE+   +M+RG   +T+  +F    + P VV +R    +++G L+ Q+ VR +++Q++ I+D+FGR++ GS + P+D+LEYVVFE+ +   Y  WR+H KIV
Sbjct:   54 ADMISKARAAGVVTPHETMERPINIACTAGIFDPYIPPEGDARLSSLSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTTKTFPEKAQELFIAAHQCLTKFDRHE--LHTLVTERCYPEMVRGNRYRTIQWSFVESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQSLTIYDRFGRVMCGSEE-PRDVLEYVVFERHMVNPYGTWRMHGKIV 265
[Close]
BLAST of Large subunit ribosomal protein L45 vs. TrEMBL
Match: A0A564Y6X8 (Tim44 domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS2921 PE=4 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 4.443e-60
Identity = 109/276 (39.49%), Postives = 166/276 (60.14%), Query Frame = 3 
Query:  177 VREMRTRHRNARFLIMNKYQPWPKAADVKKVF----EDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIK---NTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKS-TLVCHRTSRL 980
            VR +R +    +F ++ + QPW +  D   +        ++   SE+RE+LRR G++    F++R INL+ +  IFD+++PPEGDGK S+L+    TE   + +K    + A  +I+K    F    FP  A+ IY++VL++LP +  NE  LLEL TEK   +M  GL+ +TL   F    + P VVS RTE  + +G +FGQ+ +RF++QQ +AI+D+FGRL++G   +P D+LEYVVFE  I++EY +WRIH K+V    +       RT RL
Sbjct:   14 VRTIRHKPWIPKFRLIRQMQPWVQPFDPDLISIGGKSGGERSTASEIREHLRRNGLMPPLIFQDRPINLTHSGRIFDEYVPPEGDGKSSLLSTEMVTEMKDTVVKKAKTSRAAVRIKKHKPTFSTASFPSEADAIYKEVLSLLPKFYDNEERLLELTTEKAFAEMTAGLKLRTLHWDFVGSLEPPRVVSCRTEEALGKGNVFGQVTIRFHTQQILAIYDRFGRLLFGHPTSPVDVLEYVVFENYITDEYGRWRIHGKVVPSWARGFAAAPQRTRRL 289
[Close]
BLAST of Large subunit ribosomal protein L45 vs. TrEMBL
Match: A0A0X3QDD1 (Putative 39S ribosomal protein L45 OS=Schistocephalus solidus OX=70667 GN=RM45 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 5.696e-58
Identity = 107/280 (38.21%), Postives = 163/280 (58.21%), Query Frame = 3 
Query:  165 CNISVREMRTRHRNARFLIMNKYQPWPKAADVKKVF----EDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPSRYTEST---SSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLI 983
            C   VR +R +    +F ++ + QPW +  D   +F       ++   SE+RE L+R G++    F++R IN++ +  IFD+++PPEGDGK SIL+    +E     S   K+  A+R+I K    F+   FP  A+ IY++   +LP Y  NE  LLEL+TEK   +M  GL  +TL   F    + P VVS+RTE  I +  +F Q+ VRF +QQ +AI+D+FGRL++G   +  D+LEY+VFE  I++ + QWRIH KIV    +     +RT +L+
Sbjct:   18 CLEPVRHIRHKPWIPKFRLIRQMQPWVRPFDPDLLFLGGKTGPERTTASEIREQLKRNGLMPPLIFQDRPINITHSGRIFDEYVPPEGDGKASILSAEGLSEKKDLLSKKAKSMRAMRRISKHQPTFNTAAFPSEADAIYKEANILLPKYFDNESRLLELLTEKAFVEMTDGLRLRTLEWQFKGSLEPPRVVSMRTEEAIGKDNIFAQVTVRFLTQQVLAIYDRFGRLLFGHPTSAVDVLEYIVFENHITDAFGQWRIHGKIVPPWARVMTAPNRTHKLL 297
[Close]
BLAST of Large subunit ribosomal protein L45 vs. TrEMBL
Match: A0A0V0J2Y1 (Putative 39S ribosomal protein L45 (Fragment) OS=Schistocephalus solidus OX=70667 GN=RM45 PE=4 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.179e-57
Identity = 107/280 (38.21%), Postives = 163/280 (58.21%), Query Frame = 3 
Query:  165 CNISVREMRTRHRNARFLIMNKYQPWPKAADVKKVF----EDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPSRYTEST---SSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLI 983
            C   VR +R +    +F ++ + QPW +  D   +F       ++   SE+RE L+R G++    F++R IN++ +  IFD+++PPEGDGK SIL+    +E     S   K+  A+R+I K    F+   FP  A+ IY++   +LP Y  NE  LLEL+TEK   +M  GL  +TL   F    + P VVS+RTE  I +  +F Q+ VRF +QQ +AI+D+FGRL++G   +  D+LEY+VFE  I++ + QWRIH KIV    +     +RT +L+
Sbjct:   51 CLEPVRHIRHKPWIPKFRLIRQMQPWVRPFDPDLLFLGGKTGPERTTASEIREQLKRNGLMPPLIFQDRPINITHSGRIFDEYVPPEGDGKASILSAEGLSEKKDLLSKKAKSMRAMRRISKHQPTFNTAAFPSEADAIYKEANILLPKYFDNESRLLELLTEKAFVEMTDGLRLRTLEWQFKGSLEPPRVVSMRTEEAIGKDNIFAQVTVRFLTQQVLAIYDRFGRLLFGHPTSAVDVLEYIVFENHITDAFGQWRIHGKIVPPWARVMTAPNRTHKLL 330
[Close]
BLAST of Large subunit ribosomal protein L45 vs. TrEMBL
Match: A0A3P7CZ71 (Tim44 domain-containing protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS11163 PE=4 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 6.704e-57
Identity = 107/280 (38.21%), Postives = 163/280 (58.21%), Query Frame = 3 
Query:  165 CNISVREMRTRHRNARFLIMNKYQPWPKAADVKKVF----EDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPSRYTEST---SSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLI 983
            C   VR +R +    +F ++ + QPW +  D   +F       ++   SE+RE L+R G++    F++R IN++ +  IFD+++PPEGDGK SIL+    +E     S   K+  A+R+I K    F+   FP  A+ IY++   +LP Y  NE  LLEL+TEK   +M  GL  +TL   F    + P VVS+RTE  I +  +F Q+ VRF +QQ +AI+D+FGRL++G   +  D+LEY+VFE  I++ + QWRIH KIV    +     +RT +L+
Sbjct:    8 CLEPVRHIRHKPWIPKFRLIRQMQPWVRPFDPDLLFLGGKTGPERTTASEIREQLKRNGLMPPLIFQDRPINITHSGRIFDEYVPPEGDGKASILSAEGLSEKKDLLSKKAKSMRAMRRISKHQPTFNTAAFPSEADAIYKEANILLPKYFDNESRLLELLTEKAFVEMTDGLRLRTLEWQFKGSLEPPRVVSMRTEEAIGKDNIFAQVTVRFLTQQVLAIYDRFGRLLFGHPTSAVDVLEYIVFENHITDAFGQWRIHGKIVPPWARVMTAPNRTHKLL 287
[Close]
BLAST of Large subunit ribosomal protein L45 vs. TrEMBL
Match: A0A183T3W3 (Putative 39S ribosomal protein L45 OS=Schistocephalus solidus OX=70667 PE=4 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 6.704e-57
Identity = 107/280 (38.21%), Postives = 163/280 (58.21%), Query Frame = 3 
Query:  165 CNISVREMRTRHRNARFLIMNKYQPWPKAADVKKVF----EDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPSRYTEST---SSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLI 983
            C   VR +R +    +F ++ + QPW +  D   +F       ++   SE+RE L+R G++    F++R IN++ +  IFD+++PPEGDGK SIL+    +E     S   K+  A+R+I K    F+   FP  A+ IY++   +LP Y  NE  LLEL+TEK   +M  GL  +TL   F    + P VVS+RTE  I +  +F Q+ VRF +QQ +AI+D+FGRL++G   +  D+LEY+VFE  I++ + QWRIH KIV    +     +RT +L+
Sbjct:    8 CLEPVRHIRHKPWIPKFRLIRQMQPWVRPFDPDLLFLGGKTGPERTTASEIREQLKRNGLMPPLIFQDRPINITHSGRIFDEYVPPEGDGKASILSAEGLSEKKDLLSKKAKSMRAMRRISKHQPTFNTAAFPSEADAIYKEANILLPKYFDNESRLLELLTEKAFVEMTDGLRLRTLEWQFKGSLEPPRVVSMRTEEAIGKDNIFAQVTVRFLTQQVLAIYDRFGRLLFGHPTSAVDVLEYIVFENHITDAFGQWRIHGKIVPPWARVMTAPNRTHKLL 287
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Cavefish
Match: mrpl45 (mitochondrial ribosomal protein L45 [Source:NCBI gene;Acc:103022322])

HSP 1 Score: 149.828 bits (377), Expect = 1.303e-41
Identity = 79/198 (39.90%), Postives = 120/198 (60.61%), Query Frame = 3 
Query:  348 FKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            + ER IN+SCT  I D +IPPEGD +LS L+     + TE    +  + +A RKI+  DS F  K F + A++I+ +    L ++  N+  L  LVTE+   +M+RG   KTL   F    + P VV  R    +++G ++GQ+ VR +S+QT+AI+D+FGRL+ G  + P+D+LEY+V E+ +   Y  WR+H KIV
Sbjct:   76 YIERPINISCTAGIVDPYIPPEGDARLSTLSKEGLKQRTEQLRQSAASQLAFRKIKDHDSEFSSKGFAVKAQEIFIEAHAALTEF--NKEKLHSLVTERCYPEMVRGNRYKTLHWRFIESLEPPRVVHARCPDMVSKGNMYGQVTVRMHSRQTLAIYDRFGRLMLGDEEEPRDVLEYLVMERHLINPYGCWRLHGKIV 271
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Sea Lamprey
Match: mrpl45 (mitochondrial ribosomal protein L45 [Source:ZFIN;Acc:ZDB-GENE-040426-1041])

HSP 1 Score: 171.014 bits (432), Expect = 2.090e-50
Identity = 85/213 (39.91%), Postives = 130/213 (61.03%), Query Frame = 3 
Query:  318 RRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPSRYTEST---SSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLK 947
            R  G++ R  + ER IN++CT  IFD ++PPEGD +L+ ++P    +       T  + +A+RK++++D  F  K F   A+DIY +  + L ++  N+  L +LVTE+   +M+RG   KTL   F    + P VV +R    I  G L+GQ+ VR  S+QT+A++D+FGRL+YGS + P+D+LEYVVFE+ +   Y  WR+H KIV    K
Sbjct:   60 RAAGVVVRQQYVERPINITCTAGIFDGYVPPEGDSRLTSMSPEGLKQRAMQIKQTAASQLAIRKLKEYDDGFSTKTFATKAQDIYVEAHDCLVNF--NKVRLHQLVTERCFPEMVRGNRLKTLRWHFLESLEPPRVVHVRCPKTIDPGNLYGQVTVRLLSKQTMALYDRFGRLMYGSEEVPKDVLEYVVFERHMPNPYGSWRLHGKIVPQWTK 270
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Medaka
Match: mrpl45 (mitochondrial ribosomal protein L45 [Source:NCBI gene;Acc:101158663])

HSP 1 Score: 161.384 bits (407), Expect = 5.659e-46
Identity = 81/208 (38.94%), Postives = 129/208 (62.02%), Query Frame = 3 
Query:  318 RRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPS---RYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIV 932
            R  G++ +  + ER IN++CT  +FD +IPPEGD +LS L+     + TE    +  + +A+RKI++ DS F  K F   A++I+ +    L  +  N+  L  LVTE+   +M RG  +KT+  +F    + P VV  R    +T+G L+GQ+ VR +S+QT+AI+D+FGRL+ GS + P+D+LEY++ E+ +   Y +WR+H KIV
Sbjct:   66 RAAGVVIQQQYMERPINIACTAGVFDPYIPPEGDARLSTLSKEGLKQRTEQIRQSAASQLAIRKIKEHDSLFSTKTFAEQAQEIFIEAHRALTQF--NKEKLHSLVTERCYPEMTRGNRHKTIRWSFVESLEPPRVVHARCPDMVTKGNLYGQVTVRLHSKQTLAIYDRFGRLMLGSEEQPKDVLEYLIIERHLINPYGRWRLHGKIV 271
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Planmine SMEST
Match: SMESG000026832.1 (SMESG000026832.1)

HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0
Identity = 298/301 (99.00%), Postives = 301/301 (100.00%), Query Frame = 3 
Query:  105 MSINYFGIVIKLFSKSKSLPCNISVREMRTRHRNARFLIMNKYQPWPKAADVKKVFEDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLIDEPLKTPN 1007
            MSINYFGIVIKLFSKSKSLPCNISVREMRTRHRNARFLIMNKYQPWPKAADVKK+FEDFDKLNPSEMRENLRRIGMLTRNSFKE+EINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLN+LPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLIDEPLKTPN
Sbjct:    1 MSINYFGIVIKLFSKSKSLPCNISVREMRTRHRNARFLIMNKYQPWPKAADVKKIFEDFDKLNPSEMRENLRRIGMLTRNSFKEKEINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNILPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLIDEPLKTPN 301
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BLAST of Large subunit ribosomal protein L45 vs. Planmine SMEST
Match: SMESG000026832.1 (SMESG000026832.1)

HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 271/274 (98.91%), Postives = 274/274 (100.00%), Query Frame = 3 
Query:  186 MRTRHRNARFLIMNKYQPWPKAADVKKVFEDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLIDEPLKTPN 1007
            MRTRHRNARFLIMNKYQPWPKAADVKK+FEDFDKLNPSEMRENLRRIGMLTRNSFKE+EINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLN+LPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLIDEPLKTPN
Sbjct:    1 MRTRHRNARFLIMNKYQPWPKAADVKKIFEDFDKLNPSEMRENLRRIGMLTRNSFKEKEINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNILPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLIDEPLKTPN 274
[Close]
BLAST of Large subunit ribosomal protein L45 vs. Planmine SMEST
Match: SMESG000026832.1 (SMESG000026832.1)

HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 259/262 (98.85%), Postives = 262/262 (100.00%), Query Frame = 3 
Query:  222 MNKYQPWPKAADVKKVFEDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLIDEPLKTPN 1007
            MNKYQPWPKAADVKK+FEDFDKLNPSEMRENLRRIGMLTRNSFKE+EINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLN+LPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLIDEPLKTPN
Sbjct:    1 MNKYQPWPKAADVKKIFEDFDKLNPSEMRENLRRIGMLTRNSFKEKEINLSCTDVIFDQFIPPEGDGKLSILNPSRYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAEDIYRQVLNILPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHDQPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQDLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLIDEPLKTPN 262
The following BLAST results are available for this feature:
BLAST of Large subunit ribosomal protein L45 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
MRPL456.255e-4638.79mitochondrial ribosomal protein L45 [Source:HGNC S... [more]
MRPL457.885e-4638.79mitochondrial ribosomal protein L45 [Source:HGNC S... [more]
MRPL452.377e-2932.71mitochondrial ribosomal protein L45 [Source:HGNC S... [more]
MRPL452.715e-2932.71mitochondrial ribosomal protein L45 [Source:HGNC S... [more]
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BLAST of Large subunit ribosomal protein L45 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl-456.373e-2129.13Probable 39S ribosomal protein L45, mitochondrial ... [more]
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BLAST of Large subunit ribosomal protein L45 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mRpL451.271e-5036.15gene:FBgn0263863 transcript:FBtr0084272[more]
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BLAST of Large subunit ribosomal protein L45 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
mrpl452.739e-4938.20mitochondrial ribosomal protein L45 [Source:ZFIN;A... [more]
mrpl452.739e-4938.20mitochondrial ribosomal protein L45 [Source:ZFIN;A... [more]
mrpl452.739e-4938.20mitochondrial ribosomal protein L45 [Source:ZFIN;A... [more]
mrpl452.489e-3140.67mitochondrial ribosomal protein L45 [Source:ZFIN;A... [more]
mrpl452.489e-3140.67mitochondrial ribosomal protein L45 [Source:ZFIN;A... [more]
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BLAST of Large subunit ribosomal protein L45 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
mrpl459.793e-4436.74mitochondrial ribosomal protein L45 [Source:NCBI g... [more]
mrpl451.258e-4336.74mitochondrial ribosomal protein L45 [Source:NCBI g... [more]
mrpl453.760e-4336.74mitochondrial ribosomal protein L45 [Source:NCBI g... [more]
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BLAST of Large subunit ribosomal protein L45 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Mrpl458.335e-4841.12mitochondrial ribosomal protein L45 [Source:MGI Sy... [more]
Mrpl454.475e-737.50mitochondrial ribosomal protein L45 [Source:MGI Sy... [more]
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BLAST of Large subunit ribosomal protein L45 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9VCX3|RM45_DROME1.274e-4936.15Probable 39S ribosomal protein L45, mitochondrial ... [more]
sp|Q9D0Q7|RM45_MOUSE5.831e-4741.1239S ribosomal protein L45, mitochondrial OS=Mus mu... [more]
sp|Q3T142|RM45_BOVIN1.070e-4538.7939S ribosomal protein L45, mitochondrial OS=Bos ta... [more]
sp|Q9BRJ2|RM45_HUMAN3.787e-4538.7939S ribosomal protein L45, mitochondrial OS=Homo s... [more]
sp|Q4QQQ4|RM45_XENTR5.188e-4336.7439S ribosomal protein L45, mitochondrial OS=Xenopu... [more]
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BLAST of Large subunit ribosomal protein L45 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A564Y6X84.443e-6039.49Tim44 domain-containing protein OS=Hymenolepis dim... [more]
A0A0X3QDD15.696e-5838.21Putative 39S ribosomal protein L45 OS=Schistocepha... [more]
A0A0V0J2Y12.179e-5738.21Putative 39S ribosomal protein L45 (Fragment) OS=S... [more]
A0A3P7CZ716.704e-5738.21Tim44 domain-containing protein OS=Schistocephalus... [more]
A0A183T3W36.704e-5738.21Putative 39S ribosomal protein L45 OS=Schistocepha... [more]
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BLAST of Large subunit ribosomal protein L45 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl451.303e-4139.90mitochondrial ribosomal protein L45 [Source:NCBI g... [more]
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BLAST of Large subunit ribosomal protein L45 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl452.090e-5039.91mitochondrial ribosomal protein L45 [Source:ZFIN;A... [more]
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BLAST of Large subunit ribosomal protein L45 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Large subunit ribosomal protein L45 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Large subunit ribosomal protein L45 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl455.659e-4638.94mitochondrial ribosomal protein L45 [Source:NCBI g... [more]
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BLAST of Large subunit ribosomal protein L45 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000026832.10.000e+099.00SMESG000026832.1[more]
SMESG000026832.10.000e+098.91SMESG000026832.1[more]
SMESG000026832.10.000e+098.85SMESG000026832.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30019639 ID=SMED30019639|Name=Large subunit ribosomal protein L45|organism=Schmidtea mediterranea sexual|type=transcript|length=1222bp
GCATTTACATACTTAATTTTATGAATCGTTTATTCGAATAAAATAATACA
TATTAATTAATATTTATTTAATCGTGATTGCATCACTTTATCAAAATAAT
TATTATGTCTATTAATTACTTTGGAATAGTTATAAAATTATTTTCAAAGT
CAAAGTCATTGCCATGCAATATATCTGTTCGTGAAATGAGAACGAGACAT
AGAAATGCAAGATTTCTTATAATGAATAAATACCAACCATGGCCTAAAGC
TGCAGATGTGAAAAAAGTTTTTGAGGACTTTGATAAACTTAATCCATCAG
AAATGCGTGAAAATTTGCGCCGAATCGGAATGCTGACAAGAAATTCCTTT
AAGGAAAGAGAAATTAATTTATCTTGTACAGATGTAATTTTTGATCAATT
CATTCCACCTGAAGGTGATGGGAAATTATCGATACTAAATCCATCGCGTT
ATACCGAGTCTACTTCATCGACAATCAAAAATACGATGGCAGTGAGAAAA
ATTAGGAAATTCGATTCCAATTTTGATAAAAAGCAATTTCCATTAATTGC
TGAGGATATTTATCGGCAGGTTCTGAATGTTTTACCGGATTATAAATCTA
ATGAAGGCTGCCTATTAGAGCTCGTCACCGAAAAGGGTTTGTGTGACATG
CTCAGAGGCTTGGAGAACAAAACATTGATGCACACCTTTCACTGTCACCA
TGACCAGCCGTCAGTTGTCTCTCTGAGAACCGAACCCGGGATTACCGAAG
GCCAACTTTTCGGCCAGATTATTGTCAGATTTTACAGTCAACAAACAATT
GCAATATTCGATAAGTTTGGTCGGCTGGTTTACGGCAGTCACGATACGCC
GCAGGATTTGCTGGAATATGTTGTGTTTGAGAAACAGATTTCCGAGGAAT
ACAGCCAGTGGAGGATTCACGCGAAAATCGTTTCAGATTCGTTGAAAAGC
ACCCTTGTTTGCCATCGTACTTCAAGGCTTATTGACGAGCCGCTTAAAAC
TCCCAATTAGCTAGTTAGTTCCGTTTTTGACTCAGCTTGTAAAATTATTT
CCACACATCGTTTGTCTTATTTTAATTGTTTGTGTGTTGAGTCGAGTAAT
GCTGAATAGCATCAGTTATCATATTGGAAACCCCGATCCTATGCAATCGA
ATTGGGTGGTTAGACTGTCCGTTCCTATTACCTGTTTCAAATTCCTGAAT
GTTTGATTGGTTAATGTTAAAT
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protein sequence of SMED30019639-orf-1

>SMED30019639-orf-1 ID=SMED30019639-orf-1|Name=SMED30019639-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=302bp
MSINYFGIVIKLFSKSKSLPCNISVREMRTRHRNARFLIMNKYQPWPKAA
DVKKVFEDFDKLNPSEMRENLRRIGMLTRNSFKEREINLSCTDVIFDQFI
PPEGDGKLSILNPSRYTESTSSTIKNTMAVRKIRKFDSNFDKKQFPLIAE
DIYRQVLNVLPDYKSNEGCLLELVTEKGLCDMLRGLENKTLMHTFHCHHD
QPSVVSLRTEPGITEGQLFGQIIVRFYSQQTIAIFDKFGRLVYGSHDTPQ
DLLEYVVFEKQISEEYSQWRIHAKIVSDSLKSTLVCHRTSRLIDEPLKTP
N*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR007379Tim44-like_dom
IPR032710NTF2-like_dom_sf
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
Vocabulary: cellular component
TermDefinition
GO:0005739mitochondrion
GO:0005762mitochondrial large ribosomal subunit
GO:0005840ribosome
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: biological process
TermDefinition
GO:0008150biological_process
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007379Tim44-like domainSMARTSM00978Tim44_a_2coord: 127..276
e-value: 2.8E-7
score: 40.2
IPR007379Tim44-like domainPFAMPF04280Tim44coord: 129..274
e-value: 7.9E-16
score: 58.5
NoneNo IPR availableGENE3DG3DSA:3.10.450.240coord: 126..293
e-value: 6.2E-39
score: 135.2
NoneNo IPR availablePANTHERPTHR28554FAMILY NOT NAMEDcoord: 57..278
IPR032710NTF2-like domain superfamilySUPERFAMILYSSF54427NTF2-likecoord: 119..278