SMED30019518

Overview
NameSMED30019518
Smed IDSMED30019518
Length (bp)1056
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30019518 (SMED30019518) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30019518 (SMED30019518) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30019518 (SMED30019518) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30019518 (SMED30019518) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30019518

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30019518h1SMcG0012840 dd_Smed_v4_12680_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30019518h1SMcG0012840 dd_Smed_v4_12680_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30019518h1SMcG0012840 dd_Smed_v4_12680_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30019518h1SMcG0012840 dd_Smed_v4_12680_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30019518h1SMcG0012840 dd_Smed_v4_12680_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30019518h1SMcG0012840 dd_Smed_v4_12680_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30019518h1SMcG0012840 dd_Smed_v4_12680_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30019518h1SMcG0012840 dd_Smed_v4_12680_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30019518 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000110:215102..216904 -5079
Homology
[Close]
BLAST of SMED30019518 vs. Planmine SMEST
Match: SMESG000072984.1 (SMESG000072984.1)

HSP 1 Score: 251.136 bits (640), Expect = 1.308e-144
Identity = 140/148 (94.59%), Postives = 141/148 (95.27%), Query Frame = 2 
Query:  617 LIEYLISCGDLSFEDCCCQHDQFKCKSY--NWSANIIQETTRAKVINRMNKIRKLLTXXXXXXXXXXXXXXXXXPLSFVNSNILFRDVIGYYIWEICENFWKLIENPYNHFERIQLRLYCHASILVALSEYSVARQHHPENTDKSIND 1054
            L +   SCGDLSFEDCCCQHDQFKCKSY  NWSANIIQETTRAKVINRMNKIRKLLTSSN EFNSRFNENLLNFPLSFVNSNILFRDVIGYYIWEICENFWKLIENPYNHFERIQLRLYCHASILVALSEYSVARQHHPENTDKSIND
Sbjct:  149 LFKIFASCGDLSFEDCCCQHDQFKCKSYLYNWSANIIQETTRAKVINRMNKIRKLLTSSNYEFNSRFNENLLNFPLSFVNSNILFRDVIGYYIWEICENFWKLIENPYNHFERIQLRLYCHASILVALSEYSVARQHHPENTDKSIND 296

HSP 2 Score: 165.622 bits (418), Expect = 1.308e-144
Identity = 82/88 (93.18%), Postives = 83/88 (94.32%), Query Frame = 1 
Query:   88 MQLIVINGESCSEKIEVEIEEFAFVADIKDKFDEILSGHGKYKSEYFKLIYKNMVLNDDYIKLYNFHDHDEIWFGKIENYLTKYKLMA 351
            MQLIVINGESCSEKIEVEIEEFAFVADIKDKFDEILSGHGKYKSEYF LIYKNMVLNDDYIKLYNFHDHDEIWFGKIENYLT    +A
Sbjct:    1 MQLIVINGESCSEKIEVEIEEFAFVADIKDKFDEILSGHGKYKSEYFILIYKNMVLNDDYIKLYNFHDHDEIWFGKIENYLTNEDCIA 88

HSP 3 Score: 138.272 bits (347), Expect = 1.308e-144
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 3 
Query:  375 VSEDCIAEIFIATRTLDIIYIVVKLNDSISAIRLILAKVYSEITNLWDCKGREIKNNEIVKDIYTSGLFKIFA 593
             +EDCIAEIFIA RTLDIIYI+VKLNDSISAIRLILAKVYSEITNLWDCKGREIKNNEIVKDIYTSGLFKIFA
Sbjct:   82 TNEDCIAEIFIAARTLDIIYIIVKLNDSISAIRLILAKVYSEITNLWDCKGREIKNNEIVKDIYTSGLFKIFA 154
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BLAST of SMED30019518 vs. Planmine SMEST
Match: SMESG000024532.1 (SMESG000024532.1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.976e-43
Identity = 43/81 (53.09%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:   88 MQLIVINGESCSEKIEVEIEEFAFVADIKDKFDEILSGHGKYKSEYFKLIYKNMVLNDDYIKLYNFHDHDEIWFGKIENYL 330
            M++ V+NGE+ S K  +EI++ ++V DIK K D+IL+G GK++ E+ + IYKN++L+D+YIK Y   + DEIWFGKIENYL
Sbjct:    1 MKISVVNGENLSVKFVIEIDKHSYVGDIKHKIDKILNGQGKWEKEHLRFIYKNIILHDEYIKRYKVCESDEIWFGKIENYL 81

HSP 2 Score: 68.9366 bits (167), Expect = 1.976e-43
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 2 
Query:  647 LSFEDCCCQHDQFKCKSYNWSANIIQETTRAKVINRMNKIRKLLTXXXXXXXXXXXXXXXXXPLSFVNSNILFRDVIGYYIWEICENFWKLIENP-----YNHFERIQLRLYCHASILVALSEYSVARQHHPENTDKSIN 1051
            LSFEDC  QHD+F  +    S    ++ T    +N +NKIR +++  N+  ++R  ENL N P   VNS +LF   I   I +IC+ FWK  ++      YN  +  +L      SILVAL +YS +RQ  PEN DKS N
Sbjct:  164 LSFEDCVRQHDEFTFRFCLNSEFEFEDMTEINTVNLINKIRTIMS-LNDVIDARLKENLSNIPSGVVNSKLLFYYNIQLRILDICQEFWKSTKDSPYYINYNIIKSFEL------SILVALHQYSHSRQKDPENKDKSFN 296

HSP 3 Score: 54.6842 bits (130), Expect = 1.976e-43
Identity = 27/70 (38.57%), Postives = 49/70 (70.00%), Query Frame = 3 
Query:  378 SEDCIAEIFIATRTLDIIYIVVKLNDSISAIRLILAKVYSEITNLWDCKGREIKNNEIVKDIYTSGLFKI 587
            S+D I E+F+A  +  +I+++VK+N SI+ IR ++  V S++ N++D  GRE++N +IV DI   G +++
Sbjct:   83 SDDVIIEVFLAGCSPVLIWLIVKINHSITVIRSMIEIVQSKLINIYDWNGREMQNVQIVSDIDPIGYYRL 152
[Close]
BLAST of SMED30019518 vs. Planmine SMEST
Match: SMESG000024532.1 (SMESG000024532.1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.684e-43
Identity = 43/81 (53.09%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:   88 MQLIVINGESCSEKIEVEIEEFAFVADIKDKFDEILSGHGKYKSEYFKLIYKNMVLNDDYIKLYNFHDHDEIWFGKIENYL 330
            M++ V+NGE+ S K  +EI++ ++V DIK K D+IL+G GK++ E+ + IYKN++L+D+YIK Y   + DEIWFGKIENYL
Sbjct:    1 MKISVVNGENLSVKFVIEIDKHSYVGDIKHKIDKILNGQGKWEKEHLRFIYKNIILHDEYIKRYKVCESDEIWFGKIENYL 81

HSP 2 Score: 68.5514 bits (166), Expect = 4.684e-43
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 2 
Query:  647 LSFEDCCCQHDQFKCKSYNWSANIIQETTRAKVINRMNKIRKLLTXXXXXXXXXXXXXXXXXPLSFVNSNILFRDVIGYYIWEICENFWKLIENP-----YNHFERIQLRLYCHASILVALSEYSVARQHHPENTDKSIN 1051
            LSFEDC  QHD+F  +    S    ++ T    +N +NKIR +++  N+  ++R  ENL N P   VNS +LF   I   I +IC+ FWK  ++      YN  +  +L      SILVAL +YS +RQ  PEN DKS N
Sbjct:  164 LSFEDCVRQHDEFTFRFCLNSEFEFEDMTEINTVNLINKIRTIMS-LNDVIDARLKENLSNIPSGVVNSKLLFYYNIQLRILDICQEFWKSTKDSPYYINYNIIKSFEL------SILVALHQYSHSRQKDPENKDKSFN 296

HSP 3 Score: 54.299 bits (129), Expect = 4.684e-43
Identity = 27/70 (38.57%), Postives = 49/70 (70.00%), Query Frame = 3 
Query:  378 SEDCIAEIFIATRTLDIIYIVVKLNDSISAIRLILAKVYSEITNLWDCKGREIKNNEIVKDIYTSGLFKI 587
            S+D I E+F+A  +  +I+++VK+N SI+ IR ++  V S++ N++D  GRE++N +IV DI   G +++
Sbjct:   83 SDDVIIEVFLAGCSPVLIWLIVKINHSITVIRSMIEIVQSKLINIYDWNGREMQNVQIVSDIDPIGYYRL 152
[Close]
BLAST of SMED30019518 vs. Planmine SMEST
Match: SMESG000071997.1 (SMESG000071997.1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.200e-24
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   88 MQLIVINGESCSEKIEVEIEEFAFVADIKDKFDEILSGHGKYKSEYFKLI-YKNMVLND-DYIKLYNFHDHDEIWFGKIENYLTK 336
            M++ V+NGE+  EK  +EIE   FV++IK +  E      + +  YF LI   N +LND D++  YN  D+DEIW G +EN++ K
Sbjct:    1 MKIFVVNGENGGEKTAIEIEGLTFVSEIKLRLPE------ECRVNYFWLINSNNFLLNDNDHLSRYNLSDNDEIWHGSLENFIKK 79

HSP 2 Score: 49.2914 bits (116), Expect = 2.200e-24
Identity = 24/69 (34.78%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:  381 EDCIAEIFIATRTLDIIYIVVKLNDSISAIRLILAKVYSEITNLWDCKGREIKNNEIVKDIYTSGLFKI 587
            +D I EIF++  T  I ++VVK+N S+S IR  L ++  +I N+++  G+ +++N++V DI   G +++
Sbjct:   80 DDVIVEIFLSGWTPFISWLVVKVNQSMSEIRAALVRIEPDIINIFNGDGQLMEDNQLVTDIDRDGYYRL 148

HSP 3 Score: 40.0466 bits (92), Expect = 2.200e-24
Identity = 45/156 (28.85%), Postives = 77/156 (49.36%), Query Frame = 2 
Query:  629 LISCG-----DLSFEDCCCQHD----QFK-CKSY-----NWSANIIQETTRAKVINRMNKIRKLLTXXXXXXXXXXXXXXXXXPLSFVNSNILFRDVIGYYIWEICENFWKLIENPYNHFERIQLRLYCHASILVALSEYSVARQHHPENTDKSIN 1051
            +ISCG     +L+F++C   +     +FK  KS+      + +  IQE TR ++I +M +IR++++S++               L F+ S +LF+  I   + EIC ++W LI+  Y       + LY   S+L  LSE S +  +   + DKS  
Sbjct:  149 IISCGRGANMNLAFDECYKFYKLHILRFKYSKSHLLYYAQFYSEGIQEQTRYQLIYQMIRIREIMSSNDVIDTRLNKNLSDF--LFFIKSKLLFQQDISARLLEICYSYWFLIKYFYTSEVWAVVGLYFRLSLLNVLSECSNSVVNLGVSADKSFG 302
[Close]
BLAST of SMED30019518 vs. Planmine SMEST
Match: SMESG000024746.1 (SMESG000024746.1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.105e-21
Identity = 23/70 (32.86%), Postives = 44/70 (62.86%), Query Frame = 3 
Query:  378 SEDCIAEIFIATRTLDIIYIVVKLNDSISAIRLILAKVYSEITNLWDCKGREIKNNEIVKDIYTSGLFKI 587
            ++D I E+F+       I++++ +ND IS +R IL ++  EI  +W+  G ++ NN+ VKDI  +G +++
Sbjct:   83 NDDVIIEVFLMGLASGFIWLILPMNDKISTVRSILERIAPEIIKIWNGNGSKLSNNKTVKDIDENGYYRL 152

HSP 2 Score: 45.4394 bits (106), Expect = 1.105e-21
Identity = 46/146 (31.51%), Postives = 70/146 (47.95%), Query Frame = 2 
Query:  629 LISCG----DLSFEDCCCQHDQFKCKSYNWSANIIQETTRAKVINRMNKIRKLLTXXXXXXXXXXXXXXXXXPLSFVNSNILFRDVIGYYIWEICENFWKLIENPYNHFERIQLRLYCHASILVALSEYSVARQHHPENTDKSIND 1054
            ++SCG    DL+F DCC ++DQF+ +  +   N         V++ M +IRK LTS+ +  N+   +     P SF+NS  LF + I   I  +   +W  ++ P        +   C   I   L EY  AR+ H E  DKSI +
Sbjct:  153 VVSCGEKKRDLTFTDCCYRYDQFRIEYLHMFLNYNSNKKFKNVVD-MTEIRKRLTSNESLNNNYIKKLSNFPP-SFINSCFLFCNNIYPRIIHLFNEYWLSLKYPIGFQICEIIHNCCGVFIWNELFEYVRARRDHREIADKSIKE 296

HSP 3 Score: 42.3578 bits (98), Expect = 1.105e-21
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  145 EEFAFVADIKDKFDEILSGHGKYKSEYFKLIYKNMVLNDD-YIKLYNFHDHDEIWFGKIENYL 330
            E F  V DIK K +       K+    F+LI+  ++LNDD YI+ Y   ++D I++G +ENYL
Sbjct:   21 EFFELVKDIKAKLNA--GNPEKWLENNFQLIHNKLILNDDEYIRRYKLCENDIIYYGTVENYL 81
The following BLAST results are available for this feature:
BLAST of SMED30019518 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019518 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000072984.11.308e-14494.59SMESG000072984.1[more]
SMESG000024532.11.976e-4353.09SMESG000024532.1[more]
SMESG000024532.14.684e-4353.09SMESG000024532.1[more]
SMESG000071997.12.200e-2441.18SMESG000071997.1[more]
SMESG000024746.11.105e-2132.86SMESG000024746.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30019518 ID=SMED30019518|Name=SMED30019518|organism=Schmidtea mediterranea sexual|type=transcript|length=1056bp
TGTATTTATGCAAAAAATACCAAAATATTTTTGTTATCTTATTTTTGTAA
ATTTGTTTTAGTTAGATTGTAGTATCAAAATATTAAAATGCAATTGATAG
TGATAAATGGTGAAAGTTGTAGTGAAAAAATAGAAGTTGAAATAGAAGAA
TTCGCATTCGTAGCAGATATAAAAGATAAATTTGATGAAATTCTTAGTGG
ACATGGAAAATATAAGTCAGAATACTTTAAATTAATTTACAAAAATATGG
TTTTAAACGATGACTATATTAAGCTATACAATTTTCATGATCATGATGAA
ATCTGGTTTGGTAAAATTGAAAATTATTTGACAAAGTATAAATTAATGGC
AATCTTATATGATTTTTATTTGATGTCAGTGAGGATTGTATTGCAGAGAT
TTTTATAGCAACACGGACACTTGATATTATATATATAGTAGTAAAATTAA
ATGATTCGATATCAGCGATCAGATTAATATTAGCAAAAGTTTATTCTGAA
ATTACAAATTTGTGGGATTGCAAAGGTCGAGAAATTAAAAATAATGAAAT
AGTTAAAGATATATATACGAGTGGATTATTTAAAATTTTTGCGAGGTTAG
TACGATTATTGAATAATTGATTGAATACTTGATAAGCTGTGGCGATTTGT
CTTTCGAAGATTGCTGCTGTCAGCACGATCAATTCAAATGCAAATCATAT
AATTGGTCAGCTAATATTATCCAAGAAACAACAAGAGCGAAAGTAATAAA
TCGAATGAATAAAATCAGGAAGTTGCTCACCTCATCAAATAACGAATTCA
ATTCCAGATTTAACGAGAATTTATTGAATTTTCCGTTGTCATTTGTCAAT
TCAAATATTCTATTTCGTGACGTCATTGGCTATTACATCTGGGAGATTTG
TGAGAATTTTTGGAAATTGATTGAAAATCCATATAATCATTTCGAGCGTA
TCCAGTTGAGATTGTATTGCCACGCATCTATATTAGTTGCTTTATCTGAA
TATAGTGTTGCTAGGCAACATCACCCAGAAAATACCGATAAATCAATAAA
TGACAT
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protein sequence of SMED30019518-orf-1

>SMED30019518-orf-1 ID=SMED30019518-orf-1|Name=SMED30019518-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=100bp
MNKIRKLLTSSNNEFNSRFNENLLNFPLSFVNSNILFRDVIGYYIWEICE
NFWKLIENPYNHFERIQLRLYCHASILVALSEYSVARQHHPENTDKSIND
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protein sequence of SMED30019518-orf-2

>SMED30019518-orf-2 ID=SMED30019518-orf-2|Name=SMED30019518-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=107bp
MQLIVINGESCSEKIEVEIEEFAFVADIKDKFDEILSGHGKYKSEYFKLI
YKNMVLNDDYIKLYNFHDHDEIWFGKIENYLTKYKLMAILYDFYLMSVRI
VLQRFL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000099neuron
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-like_domsf