SMED30019391

Overview
NameSMED30019391
Smed IDSMED30019391
Length (bp)2760
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30019391 (SMED30019391) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30019391 (SMED30019391) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30019391

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
prepharyngeal regionSMED30019391h1SMcG0017390 SmedASXL_000837SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
parapharyngeal regionSMED30019391h1SMcG0017390 dd_Smed_v6_35242_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
testisSMED30019391h1SMcG0017390 PL06003X1F08_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
early male germ cellSMED30019391h1SMcG0017390 PL06003X1F08_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism asexual adult cDNA to DNA expression microarray evidence
testis primordiumSMED30019391h1SMcG0017390 PL06003X1F08_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism juvenile stagecDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Alignments
SMED30019391 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000054:147256..174325 +13581
Homology
[Close]
BLAST of SMED30019391 vs. Planmine SMEST
Match: SMESG000053767.1 (SMESG000053767.1)

HSP 1 Score: 1281.16 bits (3314), Expect = 0.000e+0
Identity = 694/694 (100.00%), Postives = 694/694 (100.00%), Query Frame = 2 
Query:  119 MNELNMVERTRKLEHFVDKTKKRRYTKSKLLELRRNKKCQEWPRIFSKKFIGVDGKWDPVGAFENNNFSQRTHSRDDIQHFYNDRFRKRQRDDYKYYWYGESTKRXXXXXXXXXXXXXXXXPKQRYQYDEDIVYESNRSRGXXXXXXXXXXXXXNKSRNTIEKECNESIANDSKPEWFTGGPSNINETIELSGMSRELEAGILKNRKPTQRTDENFTQPKKSTSDIDSNSHFSPMKSDDISQIDSHLLKIIQKNAKENDKRKTSASAKEVEKVLKSILLRPNEESQETSTLSQNSNGIILTVNEIEANLKLKGNRGAGDMSAYYKLLGLVQNNFNTNSSEENKPINPVSSKAXXXXXXXXXXXXPRQFINSKYPLANLMKNSRNTPKLTEESDLEPIGGKLEDSVNVETAEKELKDKSVRSEVNSDTDKSNSNVINNSMKFDENSVNNDVKKINGFNNYNAHSMNNAVKNERLAMASRNVCNPLSNQFSNHMLGTGQNAYXXXXXXXXXXXXXXXXXXXXQSEYCSTPETANNDKTENKTDTDSSFSNAENSSLDAFNTHLDNNFRLNAADQSAVPNQIGSYVNNFNLNNYMAPGSPLYNQLSMKQFLPFGYSQNSMFGRQFLNPYLLQQLFMHKQWENRNISLQNQLRQFQSMIFNCNSQQNAGNTANTNPTFIPTNNMSLNQGDCSPIGASK 2200
            MNELNMVERTRKLEHFVDKTKKRRYTKSKLLELRRNKKCQEWPRIFSKKFIGVDGKWDPVGAFENNNFSQRTHSRDDIQHFYNDRFRKRQRDDYKYYWYGESTKRYSSSYGGNYSHYYPSNPKQRYQYDEDIVYESNRSRGSPDDYYPSYSYTSNKSRNTIEKECNESIANDSKPEWFTGGPSNINETIELSGMSRELEAGILKNRKPTQRTDENFTQPKKSTSDIDSNSHFSPMKSDDISQIDSHLLKIIQKNAKENDKRKTSASAKEVEKVLKSILLRPNEESQETSTLSQNSNGIILTVNEIEANLKLKGNRGAGDMSAYYKLLGLVQNNFNTNSSEENKPINPVSSKAVNHTVTSTNNNHPRQFINSKYPLANLMKNSRNTPKLTEESDLEPIGGKLEDSVNVETAEKELKDKSVRSEVNSDTDKSNSNVINNSMKFDENSVNNDVKKINGFNNYNAHSMNNAVKNERLAMASRNVCNPLSNQFSNHMLGTGQNAYRWIRAMNNAAAASARITQINQSEYCSTPETANNDKTENKTDTDSSFSNAENSSLDAFNTHLDNNFRLNAADQSAVPNQIGSYVNNFNLNNYMAPGSPLYNQLSMKQFLPFGYSQNSMFGRQFLNPYLLQQLFMHKQWENRNISLQNQLRQFQSMIFNCNSQQNAGNTANTNPTFIPTNNMSLNQGDCSPIGASK
Sbjct:    1 MNELNMVERTRKLEHFVDKTKKRRYTKSKLLELRRNKKCQEWPRIFSKKFIGVDGKWDPVGAFENNNFSQRTHSRDDIQHFYNDRFRKRQRDDYKYYWYGESTKRYSSSYGGNYSHYYPSNPKQRYQYDEDIVYESNRSRGSPDDYYPSYSYTSNKSRNTIEKECNESIANDSKPEWFTGGPSNINETIELSGMSRELEAGILKNRKPTQRTDENFTQPKKSTSDIDSNSHFSPMKSDDISQIDSHLLKIIQKNAKENDKRKTSASAKEVEKVLKSILLRPNEESQETSTLSQNSNGIILTVNEIEANLKLKGNRGAGDMSAYYKLLGLVQNNFNTNSSEENKPINPVSSKAVNHTVTSTNNNHPRQFINSKYPLANLMKNSRNTPKLTEESDLEPIGGKLEDSVNVETAEKELKDKSVRSEVNSDTDKSNSNVINNSMKFDENSVNNDVKKINGFNNYNAHSMNNAVKNERLAMASRNVCNPLSNQFSNHMLGTGQNAYRWIRAMNNAAAASARITQINQSEYCSTPETANNDKTENKTDTDSSFSNAENSSLDAFNTHLDNNFRLNAADQSAVPNQIGSYVNNFNLNNYMAPGSPLYNQLSMKQFLPFGYSQNSMFGRQFLNPYLLQQLFMHKQWENRNISLQNQLRQFQSMIFNCNSQQNAGNTANTNPTFIPTNNMSLNQGDCSPIGASK 694
[Close]
BLAST of SMED30019391 vs. Planmine SMEST
Match: SMESG000053767.1 (SMESG000053767.1)

HSP 1 Score: 1270.76 bits (3287), Expect = 0.000e+0
Identity = 689/689 (100.00%), Postives = 689/689 (100.00%), Query Frame = 2 
Query:  134 MVERTRKLEHFVDKTKKRRYTKSKLLELRRNKKCQEWPRIFSKKFIGVDGKWDPVGAFENNNFSQRTHSRDDIQHFYNDRFRKRQRDDYKYYWYGESTKRXXXXXXXXXXXXXXXXPKQRYQYDEDIVYESNRSRGXXXXXXXXXXXXXNKSRNTIEKECNESIANDSKPEWFTGGPSNINETIELSGMSRELEAGILKNRKPTQRTDENFTQPKKSTSDIDSNSHFSPMKSDDISQIDSHLLKIIQKNAKENDKRKTSASAKEVEKVLKSILLRPNEESQETSTLSQNSNGIILTVNEIEANLKLKGNRGAGDMSAYYKLLGLVQNNFNTNSSEENKPINPVSSKAXXXXXXXXXXXXPRQFINSKYPLANLMKNSRNTPKLTEESDLEPIGGKLEDSVNVETAEKELKDKSVRSEVNSDTDKSNSNVINNSMKFDENSVNNDVKKINGFNNYNAHSMNNAVKNERLAMASRNVCNPLSNQFSNHMLGTGQNAYXXXXXXXXXXXXXXXXXXXXQSEYCSTPETANNDKTENKTDTDSSFSNAENSSLDAFNTHLDNNFRLNAADQSAVPNQIGSYVNNFNLNNYMAPGSPLYNQLSMKQFLPFGYSQNSMFGRQFLNPYLLQQLFMHKQWENRNISLQNQLRQFQSMIFNCNSQQNAGNTANTNPTFIPTNNMSLNQGDCSPIGASK 2200
            MVERTRKLEHFVDKTKKRRYTKSKLLELRRNKKCQEWPRIFSKKFIGVDGKWDPVGAFENNNFSQRTHSRDDIQHFYNDRFRKRQRDDYKYYWYGESTKRYSSSYGGNYSHYYPSNPKQRYQYDEDIVYESNRSRGSPDDYYPSYSYTSNKSRNTIEKECNESIANDSKPEWFTGGPSNINETIELSGMSRELEAGILKNRKPTQRTDENFTQPKKSTSDIDSNSHFSPMKSDDISQIDSHLLKIIQKNAKENDKRKTSASAKEVEKVLKSILLRPNEESQETSTLSQNSNGIILTVNEIEANLKLKGNRGAGDMSAYYKLLGLVQNNFNTNSSEENKPINPVSSKAVNHTVTSTNNNHPRQFINSKYPLANLMKNSRNTPKLTEESDLEPIGGKLEDSVNVETAEKELKDKSVRSEVNSDTDKSNSNVINNSMKFDENSVNNDVKKINGFNNYNAHSMNNAVKNERLAMASRNVCNPLSNQFSNHMLGTGQNAYRWIRAMNNAAAASARITQINQSEYCSTPETANNDKTENKTDTDSSFSNAENSSLDAFNTHLDNNFRLNAADQSAVPNQIGSYVNNFNLNNYMAPGSPLYNQLSMKQFLPFGYSQNSMFGRQFLNPYLLQQLFMHKQWENRNISLQNQLRQFQSMIFNCNSQQNAGNTANTNPTFIPTNNMSLNQGDCSPIGASK
Sbjct:    1 MVERTRKLEHFVDKTKKRRYTKSKLLELRRNKKCQEWPRIFSKKFIGVDGKWDPVGAFENNNFSQRTHSRDDIQHFYNDRFRKRQRDDYKYYWYGESTKRYSSSYGGNYSHYYPSNPKQRYQYDEDIVYESNRSRGSPDDYYPSYSYTSNKSRNTIEKECNESIANDSKPEWFTGGPSNINETIELSGMSRELEAGILKNRKPTQRTDENFTQPKKSTSDIDSNSHFSPMKSDDISQIDSHLLKIIQKNAKENDKRKTSASAKEVEKVLKSILLRPNEESQETSTLSQNSNGIILTVNEIEANLKLKGNRGAGDMSAYYKLLGLVQNNFNTNSSEENKPINPVSSKAVNHTVTSTNNNHPRQFINSKYPLANLMKNSRNTPKLTEESDLEPIGGKLEDSVNVETAEKELKDKSVRSEVNSDTDKSNSNVINNSMKFDENSVNNDVKKINGFNNYNAHSMNNAVKNERLAMASRNVCNPLSNQFSNHMLGTGQNAYRWIRAMNNAAAASARITQINQSEYCSTPETANNDKTENKTDTDSSFSNAENSSLDAFNTHLDNNFRLNAADQSAVPNQIGSYVNNFNLNNYMAPGSPLYNQLSMKQFLPFGYSQNSMFGRQFLNPYLLQQLFMHKQWENRNISLQNQLRQFQSMIFNCNSQQNAGNTANTNPTFIPTNNMSLNQGDCSPIGASK 689
The following BLAST results are available for this feature:
BLAST of SMED30019391 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019391 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000053767.10.000e+0100.00SMESG000053767.1[more]
SMESG000053767.10.000e+0100.00SMESG000053767.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30019391 ID=SMED30019391|Name=SMED30019391|organism=Schmidtea mediterranea sexual|type=transcript|length=2760bp
TAAAAATATGTTGCTTGTAAGAATTTTTCTTTTGTTATCGTGAAATAGAA
AGTTCAAATCTATTGTTCCAGAGATTGAAGTTATTTTTTGATTGAAATCG
TTTTCATAAATTCTGACTATGAACGAATTGAATATGGTCGAGAGAACTCG
GAAATTGGAGCATTTTGTAGACAAGACAAAAAAACGACGATATACGAAGT
CGAAATTGTTGGAATTGAGACGGAATAAGAAATGCCAAGAATGGCCGAGA
ATTTTCAGTAAAAAATTTATCGGAGTTGACGGAAAATGGGACCCGGTTGG
GGCGTTTGAAAATAACAACTTTTCTCAAAGAACTCACAGTCGAGATGATA
TCCAGCATTTTTACAATGACAGATTTAGGAAACGCCAGAGAGATGACTAT
AAATATTACTGGTACGGAGAATCAACAAAAAGATATAGTTCATCGTACGG
AGGTAACTATTCACATTACTATCCTTCAAATCCCAAGCAAAGATACCAAT
ATGATGAAGATATTGTCTATGAGTCTAATCGAAGTAGAGGCTCACCAGAT
GATTATTATCCATCATATTCTTACACATCAAATAAATCTCGAAACACCAT
CGAGAAAGAGTGTAACGAATCTATTGCCAATGATTCGAAACCTGAATGGT
TTACTGGAGGCCCGAGCAATATCAACGAAACGATAGAATTATCTGGCATG
TCTCGGGAACTGGAAGCAGGAATTCTGAAAAATCGAAAACCCACTCAAAG
GACTGATGAAAATTTCACACAGCCAAAAAAATCTACTTCTGACATAGATT
CCAATAGCCATTTTTCTCCAATGAAAAGCGACGACATTTCTCAAATAGAT
TCGCATTTATTGAAGATAATTCAAAAGAATGCAAAAGAAAATGATAAAAG
AAAAACTTCGGCATCTGCGAAGGAAGTAGAAAAGGTTTTAAAATCGATTT
TATTGCGACCGAATGAAGAATCTCAGGAAACATCAACGTTATCACAAAAT
TCCAACGGGATTATTCTTACAGTCAATGAGATAGAAGCTAATTTGAAATT
GAAAGGAAATCGTGGAGCTGGAGACATGAGTGCTTATTATAAACTTCTTG
GTTTGGTACAAAATAACTTTAATACGAATTCATCAGAAGAAAACAAGCCA
ATAAATCCAGTGAGCAGTAAAGCCGTGAATCACACGGTCACAAGTACCAA
CAATAATCACCCTCGTCAATTTATCAACTCCAAATATCCACTGGCAAATT
TAATGAAAAACAGTCGCAACACTCCGAAACTTACTGAGGAATCTGATTTG
GAACCAATTGGTGGAAAATTAGAAGACTCAGTCAATGTTGAAACGGCGGA
GAAAGAATTGAAAGATAAATCTGTGAGATCGGAAGTCAACAGTGACACGG
ATAAATCAAATTCGAATGTGATTAACAATTCAATGAAATTTGACGAGAAT
TCAGTTAATAATGACGTGAAAAAGATAAATGGTTTCAACAATTACAACGC
CCATTCTATGAATAACGCAGTCAAAAACGAGAGACTGGCAATGGCATCAA
GAAATGTCTGTAATCCACTTTCCAATCAGTTCTCTAACCACATGCTGGGA
ACTGGACAAAACGCATATCGATGGATTCGGGCAATGAATAATGCTGCTGC
TGCCAGTGCAAGAATTACTCAAATCAACCAATCAGAATATTGCTCAACGC
CAGAAACTGCCAACAACGATAAAACTGAAAATAAAACTGACACAGACTCG
TCATTTTCCAATGCTGAGAACAGCTCGTTAGACGCTTTCAATACGCACTT
GGACAATAATTTCCGATTGAATGCCGCCGATCAGTCGGCGGTTCCAAATC
AGATCGGATCATATGTCAATAATTTCAACTTGAATAACTATATGGCACCT
GGCTCACCTTTGTATAATCAACTGTCAATGAAACAATTTCTGCCTTTCGG
CTATTCACAGAATTCCATGTTTGGAAGGCAGTTTTTGAATCCATATTTAC
TTCAACAATTGTTTATGCATAAACAATGGGAAAATAGAAATATCTCACTG
CAAAATCAACTGCGTCAATTCCAGTCCATGATATTCAATTGCAATTCCCA
ACAAAACGCTGGCAATACGGCGAATACAAATCCAACTTTCATTCCTACGA
ACAACATGTCGCTGAACCAAGGCGATTGTTCTCCAATTGGTGCTAGCAAA
TAAAAATAAACTTGAATCGTTTTTTCTCTCTTTTACAAATGTTGATTTGG
TTTTCTTATCGTTGCAGTCAGATCGTTTGACGTTTTTTCAAAATTTCGTT
TTTTCTATTATTATCAAAGGACTTGGTCTCCTGTCTCTCCTTTACTCTGT
CTGTTTCTCGCTCTCTCACCGAATGAAATGTGCTGGAATAAATGTATTTT
TCTTTTCTCTGAAATACTCCCCGTACGGAATTTGGCATCGGTTTTGAGTT
TTTGGTCTTGCTGTTTTTTTTGTTTATTGAATTTAATGAATTTTTTTTAC
AAAAATGGAATCTGCTTCCGGATTTTTATTTGGGTTTTTTGGAGAATTGT
AATTACTAAGTTCGTTTATGTTGGATTTTTTTATATTTCTTTTTTCGTTA
AAATTCATCATTGGAGTTATTTTTACTTTTTTTTGGAAAAAGTAGTTTTT
GAAAACCAATAAAATTCGAAAAATGGATTTCAATTCAAATACGGTTCTAT
GTGAATTAAAACCGTCATTATTTTCTATCGTAGTTATATTAGCATGATGA
TATTTGCGTG
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protein sequence of SMED30019391-orf-1

>SMED30019391-orf-1 ID=SMED30019391-orf-1|Name=SMED30019391-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=695bp
MNELNMVERTRKLEHFVDKTKKRRYTKSKLLELRRNKKCQEWPRIFSKKF
IGVDGKWDPVGAFENNNFSQRTHSRDDIQHFYNDRFRKRQRDDYKYYWYG
ESTKRYSSSYGGNYSHYYPSNPKQRYQYDEDIVYESNRSRGSPDDYYPSY
SYTSNKSRNTIEKECNESIANDSKPEWFTGGPSNINETIELSGMSRELEA
GILKNRKPTQRTDENFTQPKKSTSDIDSNSHFSPMKSDDISQIDSHLLKI
IQKNAKENDKRKTSASAKEVEKVLKSILLRPNEESQETSTLSQNSNGIIL
TVNEIEANLKLKGNRGAGDMSAYYKLLGLVQNNFNTNSSEENKPINPVSS
KAVNHTVTSTNNNHPRQFINSKYPLANLMKNSRNTPKLTEESDLEPIGGK
LEDSVNVETAEKELKDKSVRSEVNSDTDKSNSNVINNSMKFDENSVNNDV
KKINGFNNYNAHSMNNAVKNERLAMASRNVCNPLSNQFSNHMLGTGQNAY
RWIRAMNNAAAASARITQINQSEYCSTPETANNDKTENKTDTDSSFSNAE
NSSLDAFNTHLDNNFRLNAADQSAVPNQIGSYVNNFNLNNYMAPGSPLYN
QLSMKQFLPFGYSQNSMFGRQFLNPYLLQQLFMHKQWENRNISLQNQLRQ
FQSMIFNCNSQQNAGNTANTNPTFIPTNNMSLNQGDCSPIGASK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000208testis
PLANA:0000419prepharyngeal region
PLANA:0000420parapharyngeal region
PLANA:0002030early male germ cell
PLANA:0003304testis primordium
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 634..654
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 409..424
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 409..431
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 526..549
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..220
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..238