SMED30019313

Overview
NameSMED30019313
Smed IDSMED30019313
Length (bp)1732
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30019313 (SMED30019313) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30019313 (SMED30019313) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30019313 (SMED30019313) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30019313 (SMED30019313) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30019313

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30019313 SmedASXL_017277SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30019313 SmedASXL_017277SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30019313 vs. TrEMBL
Match: A0A267DQJ8 (DDE_3 domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig002000g2 PE=4 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.740e-25
Identity = 80/351 (22.79%), Postives = 166/351 (47.29%), Query Frame = 1
Query:  475 KRHSISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSK-SLISPEIGDKLLQFAEENRNATLE-----LLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALG-INGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGYFIIHDNPFISGSTLSLNNFVE--NLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNAIN--------RAIENELE----AAENKDLKDLFRDIQRFFPKCLLKEKIL 1464
            +R ++S+  +R ++ A    E++ ++  +  + + + ++++ ++ +TG V A+K GG+K   +S E+ + L+ F  +   ATL+     L+Q +     C +    ISR L+ ++ T+K ++      N+D +   R+ + +  + E      +++ D+  CN W   T  R   G      + + R  N+++ LA+  + G +++K + G  T   +  FF E+   ++E  + ++HDN        ++    E   LPPYS FLN        +K S+ ++++ V+    +   +   A+         R +E ELE    A      +   R+  R+ P+C+  E I+
Sbjct:    8 RRVAVSQQDRRRLVNAFVLNEDWLNLAEQLNIPRQSARNVIVKFERTGRVEAEKRGGNKPKALSDEMIEALVGFVADTPAATLQDMRRHLMQAFPDWQACTIQT--ISRALDGQLITVKLLRTIPNAWNADRIKHERREFAKWLMTEG-MGKLLVFCDEMGCNVWTARTQGRAAEGVRAVRIVANQRGRNVTMCLAVSPMRGLVYWKIVRGGMTRELFAEFFAELAALVDEP-FCLLHDNARAHWDPPAMGEEQEYRPLPPYSPFLNMTERAIAAVKASLKRSLSRVELQRQIGDRNAAAALGITLQEHRARILERELEDCMSAVTQLHCEAWHRESLRYVPRCIAMEDIV 354          
BLAST of SMED30019313 vs. TrEMBL
Match: A0A0C2JI12 (DDE_3 domain-containing protein OS=Thelohanellus kitauei OX=669202 GN=RF11_01522 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.847e-18
Identity = 83/342 (24.27%), Postives = 166/342 (48.54%), Query Frame = 1
Query:  487 ISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLISPEI-----GDKLLQFAEENRNATLE-LLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLE--EQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIK---LNETGYFIIHDNPF------ISGSTLSLNNFVENLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNAINRAIENELEAAENKDLKDLFRDIQRFFPKCLLKEKI 1461
            +S+  ++ I+ A + G+  ++I    GV+++TI S++  ++++G + + K G     I PE       +++  + ++N    L  ++ +     +  V K+ I R L    ++ K++    E RN+++ + IR+ Y  R+LE  + +RE++ I+ID+   N     +  R++ G    + + + R+ NIS+  A+ +NG + +K+   +F    + ++ DE+  K   LN     I+ DN        IS       + +  LPPYS F+NP+ ++F K K  I    +E    NS +++    A +  I +        D    +  + R+  +CL +E I
Sbjct:    6 LSDLDRKRIVDAYQKGQKASEISLVLGVARSTINSVIKIFHQSGRIDSNKRG----YIQPEKLNEDQKERIKSWVDDNAGIPLRTIVTKVQEEMDISVGKSTIDRILQRFHYSWKRVSIIPERRNNESTLNIRERYATRYLELLQSFREHQFIFIDECGVNISMRTSHGRSKIGSPAIHVVPNLRSRNISICAAMNVNGMLLHKWHDRAFNRDLFGNYIDELLEKIRALNIEHATIVMDNVSFHHCEEISQQISEAGHTLLFLPPYSPFMNPIENMFSKWKREIRYRRSE----NSEELYQNITAASSLITSS-------DCSGYYSHMFRYINRCLRREVI 332          
BLAST of SMED30019313 vs. TrEMBL
Match: W4XP44 (DDE_3 domain-containing protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.079e-17
Identity = 84/362 (23.20%), Postives = 157/362 (43.37%), Query Frame = 1
Query:  469 KVKRHSISESHKREIIQAKE-NGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSK-SLISPEIGDKLLQFAEENRNATLELLQQYLA---THNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRG----RAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNE-----TGYFIIHDN--PFISGSTL-SLNNFVE--NLPPYSSFLNPVGSIFKKIKESINKAIT-----------EVQGFNSMKIHD-KFNAINRAIENELEAAENKDLKDLFRDIQRFFPKCLLKEKI 1461
            +V+   IS   +R +++A E NG++Y ++    G+ ++T +SI+  Y  +G +     GG++ S I  E+ + L    + N   TL  ++  L         VS   I+R L+  + T+K  +   + RN+  V++ R+ Y   FLE     N  ++ID+   N W   T  R  RG    R ++   Q  RN N+S  ++  + G +H++  F + T  ++  F      + NE         +I+DN  P +       +N+ +E   LPPYS FLN         K ++ + +               G   + +   + +A+       ++          +   Q + P+CL +++I
Sbjct:    4 RVQYMKISNVDRRRLVEAFEGNGQDYLELADNLGIKRSTARSIVATYLDSGRIEKLPRGGARNSKIDEEMKNYLQDIIDTNPLLTLRQMKDKLREDLPQKPEVSTTTIARALDAMLMTLKLAEDVPDARNAPRVLQQREEYAEWFLEHGVLAN-CVFIDECGYNIWTRRTQGRAPRGVPARRVVHG--QRGRNCNVSFAVSAAV-GLVHHEMAFETVTRASFERFLAATVAECNEMFPDDAPVVLIYDNARPHVRAELPEDVNSLIETKRLPPYSPFLNMTEMAHSSFKSAVKRTLALPAWQRRVGDRVAAGRAGVNLQQWRCDALREVAVQCIDTVTPAKCTQWYNHSQTYMPRCLARQEI 361          
BLAST of SMED30019313 vs. TrEMBL
Match: W4Z474 (DDE_3 domain-containing protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.408e-16
Identity = 87/362 (24.03%), Postives = 162/362 (44.75%), Query Frame = 1
Query:  487 ISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSL-ISPEIGDKLLQFAEENRNATLELLQQYLATHNC----IVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRG----RAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFT-EVT---YTSFFDEVTIKLNET-----GYFIIHDN--PFISGSTLSLNNFV---ENLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNA--------------INRAIENELEAAENKDLKDLFRDIQRFFPKCLLKEKI 1461
            IS + +  + +A +N ++Y ++    G++++T +SI+  Y  TG V     GG++++ +  ++ + L    + N   TL  +++ LA HN      VS + ++R L+  + T+K  +   + RN+  V+E R  Y   FLE     N  ++ID+   N W   T  R  RG    R ++   Q  RN N++  +++ I G +H++  F + T +VT   +  F  E   + N+        ++I+DN  P +        N +   + LPPYS FLN         K ++ +  T  Q    +++ D+  A              +  A    ++A         +   Q + P+CL  + I
Sbjct:   40 ISNTDRARLAEAFDNQQDYLELADTLGINRSTARSIVATYVDTGRVQKLPRGGARNVKMDVDMRNHLENIIDANPLLTLRQMKESLA-HNLPDKPAVSTSSVARALDGMMLTLKMAEDVPDARNAPRVVEQRLEYAEWFLEHGVVGN-CVFIDETGYNVWTRRTRGRAPRGVPARRVVHG--QRGRNCNVTFAVSVAI-GLVHHRIAFETVTRDVTRERFEDFLAETVAECNQMFPADEPIYLIYDNARPHVRAQLPDGANPIIQTKRLPPYSPFLNMTEMAHSAFKAAVKR--TLAQPAWQLRVGDRQAAQDAGINLQQWRCDILRDAALQNIDAITPGKCTQWYNHSQTYLPRCLASQHI 394          
BLAST of SMED30019313 vs. TrEMBL
Match: A0A182MKK7 (CCHC-type domain-containing protein OS=Anopheles culicifacies OX=139723 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.647e-16
Identity = 71/262 (27.10%), Postives = 129/262 (49.24%), Query Frame = 1
Query:  409 QNDIELTDDPSTPSTVHLRQKVKRHSISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGG--SKSLISPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRF--LEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGYFIIHDNPFI 1182
            ++D+ +T++ +TP +  +R+K K  + S   +  +IQA ENG   + I     + ++T+ SIL +Y KT    A K GG   K L S  + D      E+   +  +L Q+    H+  VS   I+R + N  +T K+I+   E RN+   +EIRK Y   +    ++  +  +++ID+   N     ++ R+ +G A    +   R  NIS++ A+  +G ++Y     +  + T+  F +E+  K+N  G  + H    I
Sbjct:    9 ESDLSITEESNTPGSSQMRRKNK--TTSNEDRERVIQANENGYTPSMIAEMLSMKRSTVYSILKKYFKTSEAEASKRGGIKPKKLKSAAVADIQSWIDEDCAISLKKLSQKIFERHSIQVSATTIAREIKNFNYTFKRIKLLPERRNTLNTVEIRKEYASAYNRCAQRLPQAAVVFIDEVGFNVCMRTSMGRSLKGTAAGKVVPQIRVRNISIVCAINRSGILYYMSRSKAINQQTFVQFIEELKEKMN--GLVVGHSPLLI 266          
BLAST of SMED30019313 vs. Ensembl Cavefish
Match: ENSAMXT00000037693.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002301.1:340558:341571:1 gene:ENSAMXG00000038162.1 transcript:ENSAMXT00000037693.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.2914 bits (116), Expect = 7.332e-6
Identity = 36/156 (23.08%), Postives = 76/156 (48.72%), Query Frame = 1
Query:  469 KVKRHSISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLISPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLN-NRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDD 933
            K K H+I    ++  +   ++G  Y  I  +  +S +T++ I+ ++  TG V  K   G K ++ P    ++++  + +   T+  LQQ +A+    VSK  I R+L+ N++F    ++      N       R  + +R+ +  W  +R+++ D+
Sbjct:    3 KTKEHTIQV--RQRCVDLHKSGNGYKKIATRLHLSISTVRGIIKKFKTTGTVVNKPGRGRKFIVPPRTVRRMIREIKSSPKLTVTELQQMVASWGHKVSKTTIRRYLHANKLFGRHALKKPFLTHNHK---RKRLEFAKRYYDFNW--DRVLWSDE 151          
BLAST of SMED30019313 vs. Planmine SMEST
Match: SMESG000041908.1 (SMESG000041908.1)

HSP 1 Score: 292.738 bits (748), Expect = 4.087e-86
Identity = 149/321 (46.42%), Postives = 214/321 (66.67%), Query Frame = 1
Query:  478 RHSISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLISPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGYFIIHDNPFISGSTLSLNNFVENLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNAINRAIENELEAAENKDLKDLFRDIQRFFPK 1440
            R  ISE  K  II A ENGE+Y   G   G+++N+IK+I+++Y K G +   KIGGS S IS E G+KLL F E+N  A+LE ++ +L + N  VS N ISRFL N + T K+I+ +   RNSD V+++R  Y  R+LEE W ++++IYID+   NTW    L R ++G  +Y TL +NR  N+SL LA+G+NG +H+K + GS+ + TY  F +E+T+KLN TG+ +IHDN  I G  +SLNN +E+LPPYS FLNP+ S+F KIK +I K+I+   G +SM    +F+ +  A++NEL   + +DL + F  I+RFFPK
Sbjct:  505 RKKISEIDKIRIINAMENGEDYFHFGKLLGIARNSIKTIIYKYRKFGKLSQGKIGGSISKISEENGNKLLDFVEKNVYASLEEMKNFLISENLSVSTNTISRFLENHLITTKQIRPSVAERNSDRVLDLRMEYTTRYLEEAWMDSQLIYIDECGFNTWTSQKLGRNKKGERLYATLPTNRGRNMSLALAIGVNGPVHHKLVVGSYKKDTYQIFINEITVKLNGTGFRLIHDNASIHGGAISLNNVIEHLPPYSPFLNPIESVFSKIKFNIRKSISRAGGLSSMNFQSRFDFLKDALDNELVKEDYRDLTNYFWHIRRFFPK 825          
BLAST of SMED30019313 vs. Planmine SMEST
Match: SMESG000005064.1 (SMESG000005064.1)

HSP 1 Score: 290.426 bits (742), Expect = 7.335e-86
Identity = 153/343 (44.61%), Postives = 216/343 (62.97%), Query Frame = 1
Query:  415 DIELTDDPSTPSTVHLRQKVKRHSISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLISPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGYFIIHDNPFISGSTLSLNNFVENLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNAINRAIENELEAAENKDLKDLFRDIQRFFPKC 1443
            +I L    + PST       K   ISE  K  II A ENGE+Y   G   G+S+N+IK+I+++Y K   +   KIGG+KS IS E G+KLL F E+N  A+L  ++ +L + N  VS N ISRFL N + T K+I+ +   RNSD V++ R  Y  R+LEE W ++++IYID+   NTW    L R ++G  +Y TL +NR  N+SL LA G+NG +H+K + GS+ + TY  F +E+T+KLN TGY +IHDN  I G  +SLNN +E+LPPYS FLN + S+F KIK +I K+I+   GF+SM    +F+ +  A++NEL   +  DL + F  I+RFF  C
Sbjct:  106 EITLLSKVARPSTTPETLTKKHTLISEIDKIRIINAMENGEDYFYFGKLLGISRNSIKTIIYKYRKFEKLSQGKIGGNKSKISEEHGNKLLDFVEKNVYASLVEMKNFLISENLSVSTNTISRFLGNHLITTKQIRPSVAERNSDRVLDFRMKYTTRYLEEAWMDSQLIYIDECGFNTWTSQKLGRNKKGERLYATLPTNRGRNMSLALAFGVNGPVHHKLVVGSYKKDTYQIFINEITVKLNGTGYRLIHDNASIHGGAISLNNAIEHLPPYSPFLNLIESVFSKIKFNIRKSISRAGGFSSMNFQSRFDFLKDALDNELVKEDYSDLTNYFGHIRRFFRNC 448          
BLAST of SMED30019313 vs. Planmine SMEST
Match: SMESG000005064.1 (SMESG000005064.1)

HSP 1 Score: 275.789 bits (704), Expect = 1.186e-80
Identity = 145/321 (45.17%), Postives = 205/321 (63.86%), Query Frame = 1
Query:  415 DIELTDDPSTPSTVHLRQKVKRHSISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLISPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGYFIIHDNPFISGSTLSLNNFVENLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNAINRAIENEL 1377
            +I L    + PST       K   ISE  K  II A ENGE+Y   G   G+S+N+IK+I+++Y K   +   KIGG+KS IS E G+KLL F E+N  A+L  ++ +L + N  VS N ISRFL N + T K+I+ +   RNSD V++ R  Y  R+LEE W ++++IYID+   NTW    L R ++G  +Y TL +NR  N+SL LA G+NG +H+K + GS+ + TY  F +E+T+KLN TGY +IHDN  I G  +SLNN +E+LPPYS FLN + S+F KIK +I K+I+   GF+SM    +F+ +  A++NEL
Sbjct:   89 EITLLSKVARPSTTPETLTKKHTLISEIDKIRIINAMENGEDYFYFGKLLGISRNSIKTIIYKYRKFEKLSQGKIGGNKSKISEEHGNKLLDFVEKNVYASLVEMKNFLISENLSVSTNTISRFLGNHLITTKQIRPSVAERNSDRVLDFRMKYTTRYLEEAWMDSQLIYIDECGFNTWTSQKLGRNKKGERLYATLPTNRGRNMSLALAFGVNGPVHHKLVVGSYKKDTYQIFINEITVKLNGTGYRLIHDNASIHGGAISLNNAIEHLPPYSPFLNLIESVFSKIKFNIRKSISRAGGFSSMNFQSRFDFLKDALDNEL 409          
BLAST of SMED30019313 vs. Planmine SMEST
Match: SMESG000069530.1 (SMESG000069530.1)

HSP 1 Score: 234.572 bits (597), Expect = 3.734e-73
Identity = 111/246 (45.12%), Postives = 164/246 (66.67%), Query Frame = 1
Query:  727 LQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGYFIIHDNPFISGSTLSLNNFVENLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNAINRAIENELEAAENKDLKDLFRDIQRFFPKCLLKEKIL 1464
            ++ +L + N  VS N ISRFL N + T K+I+ +   RNSD V+++R  Y  R+LEE W ++++IYID+   NTW    L R ++G  +Y TL +NR  N+SL LA+G+NG +H+K + GS+ + TY  F +E+T+KLN TG+ +IHDN  I G  +SLNN +E+LPPYS FLNP+ S+F KIK +I K+I+   G +SM    +F+ +  A++NEL   + +DL + F  I+RFFPKC+ K  I 
Sbjct:    1 MKNFLISENLSVSTNTISRFLGNHLITTKQIRPSVAERNSDRVLDLRMEYTTRYLEEAWMDSQLIYIDECGFNTWTSQKLGRNKKGERLYATLPTNRGRNMSLALAIGVNGPVHHKLVVGSYKKDTYQVFINEITVKLNGTGFRLIHDNASIHGGAISLNNVIEHLPPYSPFLNPIESVFSKIKFNIRKSISRAGGLSSMNFQSRFDFLKDALDNELVKEDYRDLTNYFWHIRRFFPKCIKKIHIF 246          
BLAST of SMED30019313 vs. Planmine SMEST
Match: SMESG000050992.1 (SMESG000050992.1)

HSP 1 Score: 207.223 bits (526), Expect = 6.005e-57
Identity = 112/262 (42.75%), Postives = 163/262 (62.21%), Query Frame = 1
Query:  403 PNQN--DIELTDDPSTPSTVHLRQKVKRHS---------ISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLISPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGY 1155
            PN+    I L    S  ST   + K+ R++         ISE  K  II A ENGE+Y   G   G+ +N+IK+++++Y K G +   KIGGSKS IS + G+KLL F E+N  A+LE ++ +L   N  VS N ISRFL N + T K+I+ +   RNSD V+++R  Y  R+LEE W ++++IYID+   N W    L R ++G  +Y+TL +NR  N+SL LA+G+NG++H+K I GS+ + TY  F +E+T+KLN TGY
Sbjct:  926 PNRTKMSIPLLSKKSNFSTKKFKSKIFRNNSSSGGVTRRISEIDKIRIINAMENGEDYFHFGKLLGIFRNSIKTLIYKYRKFGKLSQGKIGGSKSKISEDYGNKLLDFVEKNVYASLEEMKNFLIFENLSVSTNTISRFLGNHLITTKQIRPSVAERNSDRVLDLRMKYTTRYLEEAWMDSQLIYIDECGFNIWTSQKLGRNKKGERLYSTLPTNRGRNMSLALAIGVNGSVHHKLIVGSYKKDTYQIFINEITVKLNGTGY 1187          
The following BLAST results are available for this feature:
BLAST of SMED30019313 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019313 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019313 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019313 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019313 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019313 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019313 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019313 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267DQJ82.740e-2522.79DDE_3 domain-containing protein OS=Macrostomum lig... [more]
A0A0C2JI122.847e-1824.27DDE_3 domain-containing protein OS=Thelohanellus k... [more]
W4XP443.079e-1723.20DDE_3 domain-containing protein OS=Strongylocentro... [more]
W4Z4741.408e-1624.03DDE_3 domain-containing protein OS=Strongylocentro... [more]
A0A182MKK71.647e-1627.10CCHC-type domain-containing protein OS=Anopheles c... [more]
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BLAST of SMED30019313 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSAMXT00000037693.17.332e-623.08pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
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BLAST of SMED30019313 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019313 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019313 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019313 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019313 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000041908.14.087e-8646.42SMESG000041908.1[more]
SMESG000005064.17.335e-8644.61SMESG000005064.1[more]
SMESG000005064.11.186e-8045.17SMESG000005064.1[more]
SMESG000069530.13.734e-7345.12SMESG000069530.1[more]
SMESG000050992.16.005e-5742.75SMESG000050992.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30019313 ID=SMED30019313|Name=SMED30019313|organism=Schmidtea mediterranea sexual|type=transcript|length=1732bp
GATCTAAACTTTATATAAATTAAAATATTTTCGACATTTTAATTTATTTT
AACTTGTACAATGCTTCCTGATGAATTGCCATCTCAACCAGAAATTAAAA
ATATCCTCACATCTTATGTTCATGAAATATCTAGTTCAGGTGAAAGTTCC
GATGAAAATATTGACATACACGACGAAGAATCTGTTATTTATCAAGGTTA
TGAAGCACTGCCATCAGGACCTACTGAAAACAATGAAAATTGTCATGACA
GTTTCGAAGAAAGTGAAACTGAAGAGAATATCAATAATTTGGATCAATGT
ATTTTGCGAACACTAGATTCGAATGAATTAAACGGATTTGGAAATCAAAT
TGATTTTTCAACTCCACTTCTTGACACAATGCAATCAGAAATATGGAATC
AACCAAATCAAAATGACATAGAATTAACCGACGACCCTTCCACTCCCAGC
ACAGTTCATTTGCGACAAAAAGTAAAACGACATTCAATTTCAGAAAGTCA
TAAAAGAGAAATTATCCAAGCAAAGGAAAACGGTGAAAATTATAACGATA
TAGGATGCAAATTTGGGGTTTCCAAAAATACTATAAAGTCTATTTTATTT
CGATATAATAAAACAGGAATTGTGTGTGCTAAAAAAATTGGTGGCAGCAA
ATCTTTAATTTCACCAGAAATTGGCGATAAGCTGTTACAATTTGCCGAAG
AAAATCGTAATGCAACACTTGAATTATTGCAACAGTACTTGGCGACACAT
AATTGCATAGTATCAAAAAACCCGATTTCAAGGTTTTTGAATAATCGTAT
ATTTACAATTAAGAAGATTCAAGCAACCGATGAGGTTAGGAATTCCGATA
CCGTCATGGAAATAAGAAAAATATATGTTAGACGCTTTTTGGAAGAACAA
TGGAGAGAGAATAGGATAATTTACATTGACGATTGGTCGTGCAACACATG
GAAAGGTATTACTTTAAACAGAACACAGAGAGGAAGAGCTATATACAACA
CTTTGCAAAGTAACAGGAATACTAATATATCACTGATTCTCGCATTAGGG
ATAAATGGGGCAATACATTACAAATTCATATTTGGTTCATTCACAGAAGT
AACCTACACCAGTTTTTTTGATGAAGTCACAATCAAATTGAATGAAACAG
GCTATTTCATCATACATGATAATCCTTTCATTAGCGGATCAACATTGTCA
TTAAACAATTTCGTCGAAAACCTTCCACCATATAGTTCTTTTCTTAATCC
AGTTGGAAGTATTTTCAAGAAAATCAAAGAAAGCATTAATAAGGCAATCA
CTGAAGTGCAAGGGTTCAATTCGATGAAGATTCATGATAAGTTTAATGCC
ATCAATAGAGCAATCGAAAACGAACTAGAAGCTGCTGAAAATAAAGATTT
AAAAGATCTTTTTCGAGATATTCAACGGTTTTTCCCAAAATGCTTGTTGA
AAGAAAAAATACTGATGCAAATTTAAATAAATAAATACTTTTAACCTAGT
TATTTCTCATTACATAACTTCTACATTTCTAGTGAATTAATTAGCATAAA
ATTATTATCAATAAAATTTTAATCTTCATTAACATCTAAAATTTACCAGA
TCTGTTAGTGACTCTTTACGACACTACTAGAAAATTAAGGTAAATCAAAA
TTTCACATTAATAATTATATTTTTATTCGACTTGACAATTTTATCTGAAA
ATCGAGTTTTCTCTATCGAATAATTCATATTC
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protein sequence of SMED30019313-orf-1

>SMED30019313-orf-1 ID=SMED30019313-orf-1|Name=SMED30019313-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=472bp
MLPDELPSQPEIKNILTSYVHEISSSGESSDENIDIHDEESVIYQGYEAL
PSGPTENNENCHDSFEESETEENINNLDQCILRTLDSNELNGFGNQIDFS
TPLLDTMQSEIWNQPNQNDIELTDDPSTPSTVHLRQKVKRHSISESHKRE
IIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLI
SPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLNNRIFTI
KKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGI
TLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYT
SFFDEVTIKLNETGYFIIHDNPFISGSTLSLNNFVENLPPYSSFLNPVGS
IFKKIKESINKAITEVQGFNSMKIHDKFNAINRAIENELEAAENKDLKDL
FRDIQRFFPKCLLKEKILMQI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002056medial muscle cell
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR001523Paired_dom
IPR011991WHTH_DNA-bd_dom
IPR009057Homeobox-like_sf
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
Vocabulary: biological process
TermDefinition
GO:0006355regulation of transcription, DNA-templated