SMED30019313
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30019313 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of SMED30019313 vs. TrEMBL
Match: A0A267DQJ8 (DDE_3 domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig002000g2 PE=4 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 2.740e-25 Identity = 80/351 (22.79%), Postives = 166/351 (47.29%), Query Frame = 1 Query: 475 KRHSISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSK-SLISPEIGDKLLQFAEENRNATLE-----LLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALG-INGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGYFIIHDNPFISGSTLSLNNFVE--NLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNAIN--------RAIENELE----AAENKDLKDLFRDIQRFFPKCLLKEKIL 1464 +R ++S+ +R ++ A E++ ++ + + + + ++++ ++ +TG V A+K GG+K +S E+ + L+ F + ATL+ L+Q + C + ISR L+ ++ T+K ++ N+D + R+ + + + E +++ D+ CN W T R G + + R N+++ LA+ + G +++K + G T + FF E+ ++E + ++HDN ++ E LPPYS FLN +K S+ ++++ V+ + + A+ R +E ELE A + R+ R+ P+C+ E I+ Sbjct: 8 RRVAVSQQDRRRLVNAFVLNEDWLNLAEQLNIPRQSARNVIVKFERTGRVEAEKRGGNKPKALSDEMIEALVGFVADTPAATLQDMRRHLMQAFPDWQACTIQT--ISRALDGQLITVKLLRTIPNAWNADRIKHERREFAKWLMTEG-MGKLLVFCDEMGCNVWTARTQGRAAEGVRAVRIVANQRGRNVTMCLAVSPMRGLVYWKIVRGGMTRELFAEFFAELAALVDEP-FCLLHDNARAHWDPPAMGEEQEYRPLPPYSPFLNMTERAIAAVKASLKRSLSRVELQRQIGDRNAAAALGITLQEHRARILERELEDCMSAVTQLHCEAWHRESLRYVPRCIAMEDIV 354
BLAST of SMED30019313 vs. TrEMBL
Match: A0A0C2JI12 (DDE_3 domain-containing protein OS=Thelohanellus kitauei OX=669202 GN=RF11_01522 PE=4 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.847e-18 Identity = 83/342 (24.27%), Postives = 166/342 (48.54%), Query Frame = 1 Query: 487 ISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLISPEI-----GDKLLQFAEENRNATLE-LLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLE--EQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIK---LNETGYFIIHDNPF------ISGSTLSLNNFVENLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNAINRAIENELEAAENKDLKDLFRDIQRFFPKCLLKEKI 1461 +S+ ++ I+ A + G+ ++I GV+++TI S++ ++++G + + K G I PE +++ + ++N L ++ + + V K+ I R L ++ K++ E RN+++ + IR+ Y R+LE + +RE++ I+ID+ N + R++ G + + + R+ NIS+ A+ +NG + +K+ +F + ++ DE+ K LN I+ DN IS + + LPPYS F+NP+ ++F K K I +E NS +++ A + I + D + + R+ +CL +E I Sbjct: 6 LSDLDRKRIVDAYQKGQKASEISLVLGVARSTINSVIKIFHQSGRIDSNKRG----YIQPEKLNEDQKERIKSWVDDNAGIPLRTIVTKVQEEMDISVGKSTIDRILQRFHYSWKRVSIIPERRNNESTLNIRERYATRYLELLQSFREHQFIFIDECGVNISMRTSHGRSKIGSPAIHVVPNLRSRNISICAAMNVNGMLLHKWHDRAFNRDLFGNYIDELLEKIRALNIEHATIVMDNVSFHHCEEISQQISEAGHTLLFLPPYSPFMNPIENMFSKWKREIRYRRSE----NSEELYQNITAASSLITSS-------DCSGYYSHMFRYINRCLRREVI 332
BLAST of SMED30019313 vs. TrEMBL
Match: W4XP44 (DDE_3 domain-containing protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.079e-17 Identity = 84/362 (23.20%), Postives = 157/362 (43.37%), Query Frame = 1 Query: 469 KVKRHSISESHKREIIQAKE-NGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSK-SLISPEIGDKLLQFAEENRNATLELLQQYLA---THNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRG----RAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNE-----TGYFIIHDN--PFISGSTL-SLNNFVE--NLPPYSSFLNPVGSIFKKIKESINKAIT-----------EVQGFNSMKIHD-KFNAINRAIENELEAAENKDLKDLFRDIQRFFPKCLLKEKI 1461 +V+ IS +R +++A E NG++Y ++ G+ ++T +SI+ Y +G + GG++ S I E+ + L + N TL ++ L VS I+R L+ + T+K + + RN+ V++ R+ Y FLE N ++ID+ N W T R RG R ++ Q RN N+S ++ + G +H++ F + T ++ F + NE +I+DN P + +N+ +E LPPYS FLN K ++ + + G + + + +A+ ++ + Q + P+CL +++I Sbjct: 4 RVQYMKISNVDRRRLVEAFEGNGQDYLELADNLGIKRSTARSIVATYLDSGRIEKLPRGGARNSKIDEEMKNYLQDIIDTNPLLTLRQMKDKLREDLPQKPEVSTTTIARALDAMLMTLKLAEDVPDARNAPRVLQQREEYAEWFLEHGVLAN-CVFIDECGYNIWTRRTQGRAPRGVPARRVVHG--QRGRNCNVSFAVSAAV-GLVHHEMAFETVTRASFERFLAATVAECNEMFPDDAPVVLIYDNARPHVRAELPEDVNSLIETKRLPPYSPFLNMTEMAHSSFKSAVKRTLALPAWQRRVGDRVAAGRAGVNLQQWRCDALREVAVQCIDTVTPAKCTQWYNHSQTYMPRCLARQEI 361
BLAST of SMED30019313 vs. TrEMBL
Match: W4Z474 (DDE_3 domain-containing protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.408e-16 Identity = 87/362 (24.03%), Postives = 162/362 (44.75%), Query Frame = 1 Query: 487 ISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSL-ISPEIGDKLLQFAEENRNATLELLQQYLATHNC----IVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRG----RAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFT-EVT---YTSFFDEVTIKLNET-----GYFIIHDN--PFISGSTLSLNNFV---ENLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNA--------------INRAIENELEAAENKDLKDLFRDIQRFFPKCLLKEKI 1461 IS + + + +A +N ++Y ++ G++++T +SI+ Y TG V GG++++ + ++ + L + N TL +++ LA HN VS + ++R L+ + T+K + + RN+ V+E R Y FLE N ++ID+ N W T R RG R ++ Q RN N++ +++ I G +H++ F + T +VT + F E + N+ ++I+DN P + N + + LPPYS FLN K ++ + T Q +++ D+ A + A ++A + Q + P+CL + I Sbjct: 40 ISNTDRARLAEAFDNQQDYLELADTLGINRSTARSIVATYVDTGRVQKLPRGGARNVKMDVDMRNHLENIIDANPLLTLRQMKESLA-HNLPDKPAVSTSSVARALDGMMLTLKMAEDVPDARNAPRVVEQRLEYAEWFLEHGVVGN-CVFIDETGYNVWTRRTRGRAPRGVPARRVVHG--QRGRNCNVTFAVSVAI-GLVHHRIAFETVTRDVTRERFEDFLAETVAECNQMFPADEPIYLIYDNARPHVRAQLPDGANPIIQTKRLPPYSPFLNMTEMAHSAFKAAVKR--TLAQPAWQLRVGDRQAAQDAGINLQQWRCDILRDAALQNIDAITPGKCTQWYNHSQTYLPRCLASQHI 394
BLAST of SMED30019313 vs. TrEMBL
Match: A0A182MKK7 (CCHC-type domain-containing protein OS=Anopheles culicifacies OX=139723 PE=4 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.647e-16 Identity = 71/262 (27.10%), Postives = 129/262 (49.24%), Query Frame = 1 Query: 409 QNDIELTDDPSTPSTVHLRQKVKRHSISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGG--SKSLISPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRF--LEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGYFIIHDNPFI 1182 ++D+ +T++ +TP + +R+K K + S + +IQA ENG + I + ++T+ SIL +Y KT A K GG K L S + D E+ + +L Q+ H+ VS I+R + N +T K+I+ E RN+ +EIRK Y + ++ + +++ID+ N ++ R+ +G A + R NIS++ A+ +G ++Y + + T+ F +E+ K+N G + H I Sbjct: 9 ESDLSITEESNTPGSSQMRRKNK--TTSNEDRERVIQANENGYTPSMIAEMLSMKRSTVYSILKKYFKTSEAEASKRGGIKPKKLKSAAVADIQSWIDEDCAISLKKLSQKIFERHSIQVSATTIAREIKNFNYTFKRIKLLPERRNTLNTVEIRKEYASAYNRCAQRLPQAAVVFIDEVGFNVCMRTSMGRSLKGTAAGKVVPQIRVRNISIVCAINRSGILYYMSRSKAINQQTFVQFIEELKEKMN--GLVVGHSPLLI 266
BLAST of SMED30019313 vs. Ensembl Cavefish
Match: ENSAMXT00000037693.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002301.1:340558:341571:1 gene:ENSAMXG00000038162.1 transcript:ENSAMXT00000037693.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 49.2914 bits (116), Expect = 7.332e-6 Identity = 36/156 (23.08%), Postives = 76/156 (48.72%), Query Frame = 1 Query: 469 KVKRHSISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLISPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLN-NRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDD 933 K K H+I ++ + ++G Y I + +S +T++ I+ ++ TG V K G K ++ P ++++ + + T+ LQQ +A+ VSK I R+L+ N++F ++ N R + +R+ + W +R+++ D+ Sbjct: 3 KTKEHTIQV--RQRCVDLHKSGNGYKKIATRLHLSISTVRGIIKKFKTTGTVVNKPGRGRKFIVPPRTVRRMIREIKSSPKLTVTELQQMVASWGHKVSKTTIRRYLHANKLFGRHALKKPFLTHNHK---RKRLEFAKRYYDFNW--DRVLWSDE 151
BLAST of SMED30019313 vs. Planmine SMEST
Match: SMESG000041908.1 (SMESG000041908.1) HSP 1 Score: 292.738 bits (748), Expect = 4.087e-86 Identity = 149/321 (46.42%), Postives = 214/321 (66.67%), Query Frame = 1 Query: 478 RHSISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLISPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGYFIIHDNPFISGSTLSLNNFVENLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNAINRAIENELEAAENKDLKDLFRDIQRFFPK 1440 R ISE K II A ENGE+Y G G+++N+IK+I+++Y K G + KIGGS S IS E G+KLL F E+N A+LE ++ +L + N VS N ISRFL N + T K+I+ + RNSD V+++R Y R+LEE W ++++IYID+ NTW L R ++G +Y TL +NR N+SL LA+G+NG +H+K + GS+ + TY F +E+T+KLN TG+ +IHDN I G +SLNN +E+LPPYS FLNP+ S+F KIK +I K+I+ G +SM +F+ + A++NEL + +DL + F I+RFFPK Sbjct: 505 RKKISEIDKIRIINAMENGEDYFHFGKLLGIARNSIKTIIYKYRKFGKLSQGKIGGSISKISEENGNKLLDFVEKNVYASLEEMKNFLISENLSVSTNTISRFLENHLITTKQIRPSVAERNSDRVLDLRMEYTTRYLEEAWMDSQLIYIDECGFNTWTSQKLGRNKKGERLYATLPTNRGRNMSLALAIGVNGPVHHKLVVGSYKKDTYQIFINEITVKLNGTGFRLIHDNASIHGGAISLNNVIEHLPPYSPFLNPIESVFSKIKFNIRKSISRAGGLSSMNFQSRFDFLKDALDNELVKEDYRDLTNYFWHIRRFFPK 825
BLAST of SMED30019313 vs. Planmine SMEST
Match: SMESG000005064.1 (SMESG000005064.1) HSP 1 Score: 290.426 bits (742), Expect = 7.335e-86 Identity = 153/343 (44.61%), Postives = 216/343 (62.97%), Query Frame = 1 Query: 415 DIELTDDPSTPSTVHLRQKVKRHSISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLISPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGYFIIHDNPFISGSTLSLNNFVENLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNAINRAIENELEAAENKDLKDLFRDIQRFFPKC 1443 +I L + PST K ISE K II A ENGE+Y G G+S+N+IK+I+++Y K + KIGG+KS IS E G+KLL F E+N A+L ++ +L + N VS N ISRFL N + T K+I+ + RNSD V++ R Y R+LEE W ++++IYID+ NTW L R ++G +Y TL +NR N+SL LA G+NG +H+K + GS+ + TY F +E+T+KLN TGY +IHDN I G +SLNN +E+LPPYS FLN + S+F KIK +I K+I+ GF+SM +F+ + A++NEL + DL + F I+RFF C Sbjct: 106 EITLLSKVARPSTTPETLTKKHTLISEIDKIRIINAMENGEDYFYFGKLLGISRNSIKTIIYKYRKFEKLSQGKIGGNKSKISEEHGNKLLDFVEKNVYASLVEMKNFLISENLSVSTNTISRFLGNHLITTKQIRPSVAERNSDRVLDFRMKYTTRYLEEAWMDSQLIYIDECGFNTWTSQKLGRNKKGERLYATLPTNRGRNMSLALAFGVNGPVHHKLVVGSYKKDTYQIFINEITVKLNGTGYRLIHDNASIHGGAISLNNAIEHLPPYSPFLNLIESVFSKIKFNIRKSISRAGGFSSMNFQSRFDFLKDALDNELVKEDYSDLTNYFGHIRRFFRNC 448
BLAST of SMED30019313 vs. Planmine SMEST
Match: SMESG000005064.1 (SMESG000005064.1) HSP 1 Score: 275.789 bits (704), Expect = 1.186e-80 Identity = 145/321 (45.17%), Postives = 205/321 (63.86%), Query Frame = 1 Query: 415 DIELTDDPSTPSTVHLRQKVKRHSISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLISPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGYFIIHDNPFISGSTLSLNNFVENLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNAINRAIENEL 1377 +I L + PST K ISE K II A ENGE+Y G G+S+N+IK+I+++Y K + KIGG+KS IS E G+KLL F E+N A+L ++ +L + N VS N ISRFL N + T K+I+ + RNSD V++ R Y R+LEE W ++++IYID+ NTW L R ++G +Y TL +NR N+SL LA G+NG +H+K + GS+ + TY F +E+T+KLN TGY +IHDN I G +SLNN +E+LPPYS FLN + S+F KIK +I K+I+ GF+SM +F+ + A++NEL Sbjct: 89 EITLLSKVARPSTTPETLTKKHTLISEIDKIRIINAMENGEDYFYFGKLLGISRNSIKTIIYKYRKFEKLSQGKIGGNKSKISEEHGNKLLDFVEKNVYASLVEMKNFLISENLSVSTNTISRFLGNHLITTKQIRPSVAERNSDRVLDFRMKYTTRYLEEAWMDSQLIYIDECGFNTWTSQKLGRNKKGERLYATLPTNRGRNMSLALAFGVNGPVHHKLVVGSYKKDTYQIFINEITVKLNGTGYRLIHDNASIHGGAISLNNAIEHLPPYSPFLNLIESVFSKIKFNIRKSISRAGGFSSMNFQSRFDFLKDALDNEL 409
BLAST of SMED30019313 vs. Planmine SMEST
Match: SMESG000069530.1 (SMESG000069530.1) HSP 1 Score: 234.572 bits (597), Expect = 3.734e-73 Identity = 111/246 (45.12%), Postives = 164/246 (66.67%), Query Frame = 1 Query: 727 LQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGYFIIHDNPFISGSTLSLNNFVENLPPYSSFLNPVGSIFKKIKESINKAITEVQGFNSMKIHDKFNAINRAIENELEAAENKDLKDLFRDIQRFFPKCLLKEKIL 1464 ++ +L + N VS N ISRFL N + T K+I+ + RNSD V+++R Y R+LEE W ++++IYID+ NTW L R ++G +Y TL +NR N+SL LA+G+NG +H+K + GS+ + TY F +E+T+KLN TG+ +IHDN I G +SLNN +E+LPPYS FLNP+ S+F KIK +I K+I+ G +SM +F+ + A++NEL + +DL + F I+RFFPKC+ K I Sbjct: 1 MKNFLISENLSVSTNTISRFLGNHLITTKQIRPSVAERNSDRVLDLRMEYTTRYLEEAWMDSQLIYIDECGFNTWTSQKLGRNKKGERLYATLPTNRGRNMSLALAIGVNGPVHHKLVVGSYKKDTYQVFINEITVKLNGTGFRLIHDNASIHGGAISLNNVIEHLPPYSPFLNPIESVFSKIKFNIRKSISRAGGLSSMNFQSRFDFLKDALDNELVKEDYRDLTNYFWHIRRFFPKCIKKIHIF 246
BLAST of SMED30019313 vs. Planmine SMEST
Match: SMESG000050992.1 (SMESG000050992.1) HSP 1 Score: 207.223 bits (526), Expect = 6.005e-57 Identity = 112/262 (42.75%), Postives = 163/262 (62.21%), Query Frame = 1 Query: 403 PNQN--DIELTDDPSTPSTVHLRQKVKRHS---------ISESHKREIIQAKENGENYNDIGCKFGVSKNTIKSILFRYNKTGIVCAKKIGGSKSLISPEIGDKLLQFAEENRNATLELLQQYLATHNCIVSKNPISRFLNNRIFTIKKIQATDEVRNSDTVMEIRKIYVRRFLEEQWRENRIIYIDDWSCNTWKGITLNRTQRGRAIYNTLQSNRNTNISLILALGINGAIHYKFIFGSFTEVTYTSFFDEVTIKLNETGY 1155 PN+ I L S ST + K+ R++ ISE K II A ENGE+Y G G+ +N+IK+++++Y K G + KIGGSKS IS + G+KLL F E+N A+LE ++ +L N VS N ISRFL N + T K+I+ + RNSD V+++R Y R+LEE W ++++IYID+ N W L R ++G +Y+TL +NR N+SL LA+G+NG++H+K I GS+ + TY F +E+T+KLN TGY Sbjct: 926 PNRTKMSIPLLSKKSNFSTKKFKSKIFRNNSSSGGVTRRISEIDKIRIINAMENGEDYFHFGKLLGIFRNSIKTLIYKYRKFGKLSQGKIGGSKSKISEDYGNKLLDFVEKNVYASLEEMKNFLIFENLSVSTNTISRFLGNHLITTKQIRPSVAERNSDRVLDLRMKYTTRYLEEAWMDSQLIYIDECGFNIWTSQKLGRNKKGERLYSTLPTNRGRNMSLALAIGVNGSVHHKLIVGSYKKDTYQIFINEITVKLNGTGY 1187 The following BLAST results are available for this feature:
BLAST of SMED30019313 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30019313 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30019313 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30019313 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30019313 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30019313 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30019313 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30019313 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30019313 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED30019313 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30019313 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30019313 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30019313 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30019313 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30019313 ID=SMED30019313|Name=SMED30019313|organism=Schmidtea mediterranea sexual|type=transcript|length=1732bpback to top protein sequence of SMED30019313-orf-1 >SMED30019313-orf-1 ID=SMED30019313-orf-1|Name=SMED30019313-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=472bp MLPDELPSQPEIKNILTSYVHEISSSGESSDENIDIHDEESVIYQGYEALback to top Annotated Terms
The following terms have been associated with this transcript:
|