40S ribosomal protein S3a

Overview


Name	40S ribosomal protein S3a
Smed ID	SMED30019273
Length (bp)	882

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of 40S ribosomal protein S3a (SMED30019273) t-SNE clustered cells

Violin plots show distribution of expression levels for 40S ribosomal protein S3a (SMED30019273) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 40S ribosomal protein S3a (SMED30019273) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 40S ribosomal protein S3a (SMED30019273) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30019273

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 13

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30019273	h1SMcG0017075	SmedASXL_003914	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
pharynx	SMED30019273	h1SMcG0017075	dd_Smed_v4_163_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30019273	h1SMcG0017075	dd_Smed_v4_163_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30019273	h1SMcG0017075	dd_Smed_v4_163_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30019273	h1SMcG0017075	dd_Smed_v4_163_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30019273	h1SMcG0017075	dd_Smed_v4_163_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30019273	h1SMcG0017075	dd_Smed_v4_163_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30019273	h1SMcG0017075	dd_Smed_v4_163_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30019273	h1SMcG0017075	dd_Smed_v4_163_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30019273	h1SMcG0017075	dd_Smed_v4_163_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30019273	h1SMcG0017075	dd_Smed_v4_163_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30019273	h1SMcG0017075	dd_Smed_v4_163_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30019273	h1SMcG0017075	dd_Smed_v6_163_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of 40S ribosomal protein S3a vs. Ensembl Human
Match: RPS3A (ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421])

HSP 1 Score: 283.108 bits (723), Expect = 3.943e-95
Identity = 138/243 (56.79%), Postives = 178/243 (73.25%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGE----IIERPDGHEPPVQTSV 850
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DSIGKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+ +++  ATG+     +ER DG+EPPVQ SV
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 264

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BLAST of 40S ribosomal protein S3a vs. Ensembl Human
Match: RPS3A (ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421])

HSP 1 Score: 263.077 bits (671), Expect = 6.778e-88
Identity = 127/222 (57.21%), Postives = 164/222 (73.87%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATG 799
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DSIGKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+ +++  ATG
Sbjct:    3 DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATG 223

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BLAST of 40S ribosomal protein S3a vs. Ensembl Human
Match: RPS3A (ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421])

HSP 1 Score: 259.61 bits (662), Expect = 1.505e-86
Identity = 130/228 (57.02%), Postives = 165/228 (72.37%), Query Frame = 2

Query:  179 MFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGE----IIERPDGHEPPVQTSV 850
            MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DSIGKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+ +++  ATG+     +ER DG+EPPVQ SV
Sbjct:    1 MFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 227

[Close]

Query:  179 MFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGE----IIERPDGHEPPVQTSV 850
            MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DSIGKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+ +++  ATG+     +ER DG+EPPVQ SV
Sbjct:    1 MFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 227

[Close]

BLAST of 40S ribosomal protein S3a vs. Ensembl Human
Match: RPS3A (ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421])

HSP 1 Score: 224.557 bits (571), Expect = 2.911e-73
Identity = 113/194 (58.25%), Postives = 141/194 (72.68%), Query Frame = 2

Query:  179 MFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMD 760
            MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DSIGKDI + C  I+PL D  VRKVK+++KPK +L KLM+
Sbjct:    1 MFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLME 193

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BLAST of 40S ribosomal protein S3a vs. Ensembl Celegans
Match: rps-1 (40S ribosomal protein S3a [Source:UniProtKB/Swiss-Prot;Acc:P48154])

HSP 1 Score: 276.559 bits (706), Expect = 4.077e-93
Identity = 135/239 (56.49%), Postives = 172/239 (71.97%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV 850
            DPF +KEW+ I+AP+MF  R   +T++ +TQGTKIASEGLK RV  +SLG+LN    D FRKF L  EDVQG   LT+F  M +T DK+CS+VKKW T IE    VKTTD + LRVFVIAFTKK+ NQ+KK +Y +  +I+ IR  M   I+ EV  CD+KEVV KL  DSIGKDI + CS ++PL +  +RKVK+I++PK+DL +L DLHGDS  T+ A GE ++RPD +EPPVQ  V
Sbjct:   21 DPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLNNSEAD-FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGDS-ITVGADGEKVDRPDDYEPPVQQEV 257

[Close]

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV 850
            DPF +KEW+ I+AP+MF  R   +T++ +TQGTKIASEGLK RV  +SLG+LN    D FRKF L  EDVQG   LT+F  M +T DK+CS+VKKW T IE    VKTTD + LRVFVIAFTKK+ NQ+KK +Y +  +I+ IR  M   I+ EV  CD+KEVV KL  DSIGKDI + CS ++PL +  +RKVK+I++PK+DL +L DLHGDS  T+ A GE ++RPD +EPPVQ  V
Sbjct:   21 DPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLNNSEAD-FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGDS-ITVGADGEKVDRPDDYEPPVQQEV 257

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BLAST of 40S ribosomal protein S3a vs. Ensembl Fly
Match: RpS3A (gene:FBgn0017545 transcript:FBtr0308296)

HSP 1 Score: 245.743 bits (626), Expect = 9.447e-81
Identity = 118/246 (47.97%), Postives = 163/246 (66.26%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKT--EDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSA-----TTISATGEIIERPDGHEPPVQTSV 850
            DPF +K+W+ ++AP+MF  R   +T+V +TQG +IAS+ LK RV  +SL +L +    E +FRKF L  EDVQ    L +F GM LTTDK  SMVKKWQT IE   + KT D + LRVF I FT K     +K  YAQ  Q++ IR  M ++I  EV+  D+K++V KL +DSI KDI + C  I+PL D  +RKVKV++KP+ D++KL++LHGD         +S+ G +I+RP+G+EPPVQ +V
Sbjct:   23 DPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 268

[Close]

BLAST of 40S ribosomal protein S3a vs. Ensembl Fly
Match: RpS3A (gene:FBgn0017545 transcript:FBtr0089175)

HSP 1 Score: 245.743 bits (626), Expect = 9.447e-81
Identity = 118/246 (47.97%), Postives = 163/246 (66.26%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKT--EDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSA-----TTISATGEIIERPDGHEPPVQTSV 850
            DPF +K+W+ ++AP+MF  R   +T+V +TQG +IAS+ LK RV  +SL +L +    E +FRKF L  EDVQ    L +F GM LTTDK  SMVKKWQT IE   + KT D + LRVF I FT K     +K  YAQ  Q++ IR  M ++I  EV+  D+K++V KL +DSI KDI + C  I+PL D  +RKVKV++KP+ D++KL++LHGD         +S+ G +I+RP+G+EPPVQ +V
Sbjct:   23 DPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 268

[Close]

BLAST of 40S ribosomal protein S3a vs. Ensembl Fly
Match: RpS3A (gene:FBgn0017545 transcript:FBtr0089176)

HSP 1 Score: 196.823 bits (499), Expect = 2.569e-62
Identity = 98/205 (47.80%), Postives = 132/205 (64.39%), Query Frame = 2

Query:  257 NRVVTMSLGELNEKT--EDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSA-----TTISATGEIIERPDGHEPPVQTSV 850
             RV  +SL +L +    E +FRKF L  EDVQ    L +F GM LTTDK  SMVKKWQT IE   + KT D + LRVF I FT K     +K  YAQ  Q++ IR  M ++I  EV+  D+K++V KL +DSI KDI + C  I+PL D  +RKVKV++KP+ D++KL++LHGD         +S+ G +I+RP+G+EPPVQ +V
Sbjct:   14 GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEAV 218

[Close]

BLAST of 40S ribosomal protein S3a vs. Ensembl Zebrafish
Match: rps3a (ribosomal protein S3A [Source:NCBI gene;Acc:337240])

HSP 1 Score: 281.952 bits (720), Expect = 6.633e-95
Identity = 136/246 (55.28%), Postives = 177/246 (71.95%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISA-------TGEIIERPDGHEPPVQTSV 850
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGT+IAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DS+GKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+  +T +A       TG  +ER DG+EPP+Q SV
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEVSLADL-QNDEVAFRKFKLVTEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYEPPIQESV 267

[Close]

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISA-------TGEIIERPDGHEPPVQTSV 850
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGT+IAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DS+GKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+  +T +A       TG  +ER DG+EPP+Q SV
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEVSLADL-QNDEVAFRKFKLVTEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYEPPIQESV 267

[Close]

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISA-------TGEIIERPDGHEPPVQTSV 850
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGT+IAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DS+GKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+  +T +A       TG  +ER DG+EPP+Q SV
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEVSLADL-QNDEVAFRKFKLVTEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYEPPIQESV 267

[Close]

BLAST of 40S ribosomal protein S3a vs. Ensembl Xenopus
Match: ppp6r3 (protein phosphatase 6 regulatory subunit 3 [Source:Xenbase;Acc:XB-GENE-5822318])

HSP 1 Score: 279.256 bits (713), Expect = 9.219e-94
Identity = 137/243 (56.38%), Postives = 173/243 (71.19%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSAT----TISATGEIIERPDGHEPPVQTSV 850
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DSIGKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+           TG  +ER DG+EPPVQ SV
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERADGYEPPVQESV 264

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BLAST of 40S ribosomal protein S3a vs. Ensembl Xenopus
Match: ppp6r3 (protein phosphatase 6 regulatory subunit 3 [Source:Xenbase;Acc:XB-GENE-5822318])

HSP 1 Score: 200.29 bits (508), Expect = 1.580e-63
Identity = 97/167 (58.08%), Postives = 123/167 (73.65%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKL 634
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL 188

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BLAST of 40S ribosomal protein S3a vs. Ensembl Mouse
Match: Rps3a1 (ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063])

HSP 1 Score: 282.337 bits (721), Expect = 5.152e-95
Identity = 138/243 (56.79%), Postives = 176/243 (72.43%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISA----TGEIIERPDGHEPPVQTSV 850
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DSIGKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+  ++  A    TG  +ER DG+EPPVQ SV
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPVQESV 264

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BLAST of 40S ribosomal protein S3a vs. UniProt/SwissProt
Match: sp|Q5DAA3|RS3A_SCHJA (40S ribosomal protein S3a OS=Schistosoma japonicum OX=6182 GN=SJCHGC01275 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 4.140e-100
Identity = 139/240 (57.92%), Postives = 183/240 (76.25%), Query Frame = 2

Query:  131 SDPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV 850
            +DPF KKEW+ I+AP+MFPKR+ ART+VT+TQGT+IASE LK RVVT+SLG+L+EK E+ FRKF LQIEDVQG  CLT+F G++LT DK+CS+V KW++TIE   DVKTTD + LR F+I FT   P   + H+YAQ  +IK IR  + E+IQ EV++CD+KEVV KL  DSI +D  +  S+I+PL +  +RKVKV+++PK DL +LM+LHG+S +T  A GE + RPD +EPP   SV
Sbjct:   22 ADPFSKKEWYDIKAPAMFPKRTCARTLVTRTQGTRIASEALKGRVVTLSLGDLSEKNEEVFRKFKLQIEDVQGRHCLTNFHGLELTRDKLCSVVVKWRSTIEAHVDVKTTDGYLLRFFIITFTPSVPRSERLHSYAQTTRIKRIRARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPLGETFIRKVKVLKRPKADLARLMELHGESKST--APGETVSRPDHYEPPKVDSV 259

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BLAST of 40S ribosomal protein S3a vs. UniProt/SwissProt
Match: sp|P61246|RS3A_FELCA (40S ribosomal protein S3a (Fragment) OS=Felis catus OX=9685 GN=RPS3A PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.848e-94
Identity = 138/243 (56.79%), Postives = 178/243 (73.25%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGE----IIERPDGHEPPVQTSV 850
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DSIGKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+ +++  ATG+     +ER DG+EPPVQ SV
Sbjct:   19 DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 260

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BLAST of 40S ribosomal protein S3a vs. UniProt/SwissProt
Match: sp|P61247|RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens OX=9606 GN=RPS3A PE=1 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 1.894e-94
Identity = 138/243 (56.79%), Postives = 178/243 (73.25%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGE----IIERPDGHEPPVQTSV 850
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DSIGKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+ +++  ATG+     +ER DG+EPPVQ SV
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 264

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BLAST of 40S ribosomal protein S3a vs. UniProt/SwissProt
Match: sp|Q56JV9|RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus OX=9913 GN=RPS3A PE=2 SV=3)

HSP 1 Score: 283.108 bits (723), Expect = 1.894e-94
Identity = 138/243 (56.79%), Postives = 178/243 (73.25%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGE----IIERPDGHEPPVQTSV 850
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DSIGKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+ +++  ATG+     +ER DG+EPPVQ SV
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 264

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BLAST of 40S ribosomal protein S3a vs. UniProt/SwissProt
Match: sp|P49242|RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus OX=10116 GN=Rps3a PE=1 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 3.376e-94
Identity = 139/243 (57.20%), Postives = 175/243 (72.02%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSA----TTISATGEIIERPDGHEPPVQTSV 850
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DSIGKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+      TT   TG  +ER DG+EPPVQ SV
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYEPPVQESV 264

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BLAST of 40S ribosomal protein S3a vs. TrEMBL
Match: A0A183A0Z6 (40S ribosomal protein S3a OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS631 PE=3 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 3.927e-101
Identity = 146/240 (60.83%), Postives = 187/240 (77.92%), Query Frame = 2

Query:  131 SDPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV 850
            +DPF KKEW+ IRAP+MF KR+ ART+VT+TQGTKIASE LK RVVT+SLG+L+EKTE+ FRKF LQ+EDVQG QCLT+F G++LT DK+CS++ KW++TIE   DVKTTD + LR F+I+FT +      +HTYAQA +IK +R  + E+IQ EVASCD+KEVV KL  DSI +D  +  S+IFP TD  +RKVKV++KPKMDL +LMDLHG+S +  S +GE + RPD +EPP   SV
Sbjct:   22 ADPFSKKEWYDIRAPTMFSKRTCARTLVTRTQGTKIASEALKGRVVTLSLGDLHEKTEEVFRKFKLQVEDVQGRQCLTNFHGLELTRDKLCSVILKWRSTIEAHVDVKTTDGYLLRFFIISFTPRVTRFKCRHTYAQATRIKRVRARLVEIIQQEVASCDLKEVVNKLIPDSIAQDARKSASWIFPQTDTLIRKVKVLKKPKMDLARLMDLHGESKS--SGSGEGVSRPDHYEPPTVDSV 259

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BLAST of 40S ribosomal protein S3a vs. TrEMBL
Match: A0A504Z354 (40S ribosomal protein S3a OS=Fasciola gigantica OX=46835 GN=FGIG_11145 PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 8.009e-99
Identity = 144/240 (60.00%), Postives = 184/240 (76.67%), Query Frame = 2

Query:  131 SDPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV 850
            +DPF KKEW+ IRAP MF KR+ ART+VT+TQGTKIASE LK RVVT+SLG+L+EKTE+ FRKF LQ+EDVQG QCLT+F G++LT DK+CS++ KW++TIE   DVKTTD + LR F+I+FT +      +HTYAQA +IK +R  + E+IQ EV+SCD+KEVV KL  DSI  D  +  S+IFP  D  +RKVKV++KPKMDL++LMDLHG+S    +A GE + RPD +EPP   SV
Sbjct:   22 ADPFSKKEWYDIRAPVMFSKRTCARTLVTRTQGTKIASEALKGRVVTLSLGDLHEKTEEVFRKFKLQVEDVQGRQCLTNFHGLELTRDKLCSVILKWRSTIEAHVDVKTTDGYLLRFFIISFTPRVTRFKCRHTYAQATRIKRVRARLVEIIQQEVSSCDLKEVVNKLIPDSIAHDARKSASWIFPQIDTLIRKVKVLKKPKMDLSRLMDLHGESKG--AAPGESVSRPDHYEPPAVDSV 259

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BLAST of 40S ribosomal protein S3a vs. TrEMBL
Match: A0A2H1CUG1 (40S ribosomal protein S3a OS=Fasciola hepatica OX=6192 GN=D915_01300 PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 8.009e-99
Identity = 144/240 (60.00%), Postives = 184/240 (76.67%), Query Frame = 2

Query:  131 SDPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV 850
            +DPF KKEW+ IRAP MF KR+ ART+VT+TQGTKIASE LK RVVT+SLG+L+EKTE+ FRKF LQ+EDVQG QCLT+F G++LT DK+CS++ KW++TIE   DVKTTD + LR F+I+FT +      +HTYAQA +IK +R  + E+IQ EV+SCD+KEVV KL  DSI  D  +  S+IFP  D  +RKVKV++KPKMDL++LMDLHG+S    +A GE + RPD +EPP   SV
Sbjct:   22 ADPFSKKEWYDIRAPVMFSKRTCARTLVTRTQGTKIASEALKGRVVTLSLGDLHEKTEEVFRKFKLQVEDVQGRQCLTNFHGLELTRDKLCSVILKWRSTIEAHVDVKTTDGYLLRFFIISFTPRVTRFKCRHTYAQATRIKRVRARLVEIIQQEVSSCDLKEVVNKLIPDSIAHDARKSASWIFPQIDTLIRKVKVLKKPKMDLSRLMDLHGESKG--AAPGESVSRPDHYEPPAVDSV 259

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BLAST of 40S ribosomal protein S3a vs. TrEMBL
Match: C1L8J7 (40S ribosomal protein S3a OS=Schistosoma japonicum OX=6182 GN=rps3a PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 9.547e-98
Identity = 139/240 (57.92%), Postives = 183/240 (76.25%), Query Frame = 2

Query:  131 SDPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV 850
            +DPF KKEW+ I+AP+MFPKR+ ART+VT+TQGT+IASE LK RVVT+SLG+L+EK E+ FRKF LQIEDVQG  CLT+F G++LT DK+CS+V KW++TIE   DVKTTD + LR F+I FT   P   + H+YAQ  +IK IR  + E+IQ EV++CD+KEVV KL  DSI +D  +  S+I+PL +  +RKVKV+++PK DL +LM+LHG+S +T  A GE + RPD +EPP   SV
Sbjct:   22 ADPFSKKEWYDIKAPAMFPKRTCARTLVTRTQGTRIASEALKGRVVTLSLGDLSEKNEEVFRKFKLQIEDVQGRHCLTNFHGLELTRDKLCSIVVKWRSTIEAHVDVKTTDGYLLRFFIITFTPSVPRSERLHSYAQTTRIKRIRARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPLGETFIRKVKVLKRPKADLARLMELHGESKST--APGETVSRPDHYEPPKVDSV 259

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BLAST of 40S ribosomal protein S3a vs. TrEMBL
Match: A0A0R3UG15 (40S ribosomal protein S3a OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS6114 PE=3 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 9.737e-98
Identity = 142/240 (59.17%), Postives = 181/240 (75.42%), Query Frame = 2

Query:  131 SDPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV 850
            +DPF KKEW+ +RAP+MF  R  ART++T+TQGTKIASEGLK RV+ +SLG+LN+KT+D FRKF LQ+EDVQG  CLT+F GM LT DK+C MV KWQ+TIE   DVKTTD + LR FVIAFTKK  +Q K H YAQ+ +IK +R  + EV+Q EV+ CD+K VV+KL  DSIG+D   + S IFPL+   VRKVK+++KPK+DL +LM+LHG+  T     GE + RPD +EPPV  +V
Sbjct:   21 TDPFAKKEWYELRAPTMFSNRVCARTLITRTQGTKIASEGLKGRVIQLSLGDLNDKTQDIFRKFKLQVEDVQGRHCLTNFHGMDLTRDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVIAFTKKQEDQ-KSHAYAQSTRIKKLRAKIVEVVQREVSRCDLKSVVQKLIPDSIGQDALNEASTIFPLSGALVRKVKILKKPKLDLGRLMELHGEGKT--DEFGEGVARPDHYEPPVVNAV 257

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BLAST of 40S ribosomal protein S3a vs. Ensembl Cavefish
Match: rps3a (ribosomal protein S3A [Source:NCBI gene;Acc:103024043])

HSP 1 Score: 285.034 bits (728), Expect = 3.882e-96
Identity = 142/245 (57.96%), Postives = 178/245 (72.65%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGD---SATTISATGEI---IERPDGHEPPVQTSV 850
            DPF KK+W+ +RAP+MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DS+GKDI + C  I+PL D  VRKVK+++KPK DL KLM+LHG+   S+TT  A GE    +ER DG+EPPVQ SV
Sbjct:   23 DPFSKKDWYDVRAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFDLGKLMELHGEGGSSSTTKPAEGETGAKVERADGYEPPVQESV 266

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BLAST of 40S ribosomal protein S3a vs. Ensembl Sea Lamprey
Match: rps3a (ribosomal protein S3A [Source:NCBI gene;Acc:337240])

HSP 1 Score: 229.18 bits (583), Expect = 4.017e-75
Identity = 119/253 (47.04%), Postives = 160/253 (63.24%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTIS------ATGEI--------IERPDGHEPPVQTSV 850
            DPF KK+W+ ++AP+MF  R+  +T+VT++QGT+IAS+GLK RV   SL +L +  E  FRKF L +EDVQG  CLT+F GM LT DK+CSMVKKWQT IE   DVKTTD + LR+F I FTKK  NQ++K  YAQ QQ+++IR  M E++  EV S D+KE+V KL I S   ++  KC  +  +       V         + KLM+LHG+ A + +      A G+         +ER DG+EPPVQ +V
Sbjct:    2 DPFSKKDWYDVKAPAMFNIRNMGKTLVTRSQGTRIASDGLKGRVFEASLADL-QNDEVAFRKFKLIVEDVQGKSCLTNFHGMDLTRDKLCSMVKKWQTMIEAHVDVKTTDGYLLRLFCIGFTKKRSNQIRKTAYAQRQQVRAIRRKMVEIMTREVQSNDLKELVNKLRIRSSSNEVIFKCKIVMRVITVFAAAVLTASAFACAVGKLMELHGEGAASTAAKPASGAAGDAEGTASSTKVERGDGYEPPVQETV 253

[Close]

BLAST of 40S ribosomal protein S3a vs. Ensembl Yeast
Match: RPS1A (Ribosomal protein 10 (rp10) of the small (40S) subunit; homologous to mammalian ribosomal protein S3A, no bacterial homolog; RPS1A has a paralog, RPS1B, that arose from the whole genome duplication [Source:SGD;Acc:S000004433])

HSP 1 Score: 214.927 bits (546), Expect = 1.106e-69
Identity = 99/215 (46.05%), Postives = 145/215 (67.44%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSA 778
            DPF +KEWF I+APS F  R+  +T+V K+ G K AS+ LK RVV + L +L    + +FRK  L++++VQG   LT+F GM  TTDK+ SMV+KWQT IE    VKT+D++ LR+F IAFT+K  NQ+K+H+YAQ+  I++IR ++ E++  EV    + ++  KL  + I K+I      IFPL +  VRKVK++++PK D+  LM LHG+ +
Sbjct:   22 DPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGS 236

[Close]

BLAST of 40S ribosomal protein S3a vs. Ensembl Yeast
Match: RPS1B (Ribosomal protein 10 (rp10) of the small (40S) subunit; homologous to mammalian ribosomal protein S3A, no bacterial homolog; RPS1B has a paralog, RPS1A, that arose from the whole genome duplication [Source:SGD;Acc:S000004528])

HSP 1 Score: 214.542 bits (545), Expect = 1.246e-69
Identity = 99/215 (46.05%), Postives = 146/215 (67.91%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSA 778
            DPF +KEWF I+APS F  R+  +T+V K+ G K AS+ LK RVV + L +L    + +FRK  L++++VQG   LT+F GM  TTDK+ SMV+KWQT IE    VKT+D++ LR+F IAFT+K  NQ+K+H+YAQ+  I++IR ++ E++  EV +  + ++  KL  + I K+I      IFPL +  VRKVK++++PK D+  LM LHG+ +
Sbjct:   22 DPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGS 236

[Close]

BLAST of 40S ribosomal protein S3a vs. Ensembl Nematostella
Match: EDO41784 (40S ribosomal protein S3a [Source:UniProtKB/Swiss-Prot;Acc:A7S3J7])

HSP 1 Score: 253.447 bits (646), Expect = 2.594e-84
Identity = 129/244 (52.87%), Postives = 173/244 (70.90%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEI-----IERPDGHEPPVQTSV 850
            DPF KK+W+ ++APSMF  R   +T+VT+T GTKIAS+GLK RV  +SL +L +  E  FRKF L  E+VQG  CLT+F GM +TTDK+ S+VKKWQT IE   DVKTTD + LR+F I FTK+  NQ+KK  YA+  QIK+IR  M ++I  EV++ D+KEVV KL  DSIGKDI + C  I+PL D  +RKVKV++KPK D+ KLM++HG++++  + T        I+R +G EPP+Q +V
Sbjct:   22 DPFTKKDWYDVKAPSMFNIRQIGKTVVTRTAGTKIASDGLKGRVFEVSLADL-QNDEIAFRKFKLMCEEVQGRNCLTNFHGMNMTTDKLRSLVKKWQTLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTKIDR-EGFEPPIQDTV 263

[Close]

BLAST of 40S ribosomal protein S3a vs. Ensembl Medaka
Match: rps3a (ribosomal protein S3A [Source:NCBI gene;Acc:100049481])

HSP 1 Score: 270.396 bits (690), Expect = 2.186e-90
Identity = 135/245 (55.10%), Postives = 175/245 (71.43%), Query Frame = 2

Query:  134 DPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISA------TGEIIERPDGHEPPVQTSV 850
            DPF KK+W+ ++AP+MF  R+  +T+VT+TQGTKIAS+GLK RV  +SL +L +  E  FRKF L  EDVQG  CLT+F GM LT DKMCSMVKKWQT IE   DVKTTD + LR+F + FTKK  NQ++K +YAQ QQ++ IR  M E++  EV + D+KEVV KL  DS+GKDI + C  I+PL D  VRKVK+++KPK +L KLM+LHG+     +A      TG  +ER DG+EPP+Q +V
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYEPPIQETV 266

[Close]

BLAST of 40S ribosomal protein S3a vs. Planmine SMEST
Match: SMESG000066540.1 (SMESG000066540.1)

HSP 1 Score: 498.819 bits (1283), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 2

Query:   65 MALGXXXXXXXXXXXXXXXXXXSDPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV 850
            MALGKTTKKAQKLGPKKGKKKASDPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV
Sbjct:    1 MALGKTTKKAQKLGPKKGKKKASDPFLKKEWFVIRAPSMFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV 262

[Close]

BLAST of 40S ribosomal protein S3a vs. Planmine SMEST
Match: SMESG000066537.1 (SMESG000066537.1)

HSP 1 Score: 460.685 bits (1184), Expect = 2.708e-166
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 2

Query:  179 MFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV 850
            MFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV
Sbjct:    1 MFPKRSFARTIVTKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPNQLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIARKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIERPDGHEPPVQTSV 224

The following BLAST results are available for this feature:

BLAST of 40S ribosomal protein S3a vs. Ensembl Human
BLAST of 40S ribosomal protein S3a vs. Ensembl Celegans
BLAST of 40S ribosomal protein S3a vs. Ensembl Fly
BLAST of 40S ribosomal protein S3a vs. Ensembl Zebrafish
BLAST of 40S ribosomal protein S3a vs. Ensembl Xenopus
BLAST of 40S ribosomal protein S3a vs. Ensembl Mouse
BLAST of 40S ribosomal protein S3a vs. UniProt/SwissProt
BLAST of 40S ribosomal protein S3a vs. TrEMBL
BLAST of 40S ribosomal protein S3a vs. Ensembl Cavefish
BLAST of 40S ribosomal protein S3a vs. Ensembl Sea Lamprey
BLAST of 40S ribosomal protein S3a vs. Ensembl Yeast
BLAST of 40S ribosomal protein S3a vs. Ensembl Nematostella
BLAST of 40S ribosomal protein S3a vs. Ensembl Medaka
BLAST of 40S ribosomal protein S3a vs. Planmine SMEST

BLAST of 40S ribosomal protein S3a vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RPS3A	3.943e-95	56.79	ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC...	[more]
RPS3A	6.778e-88	57.21	ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC...	[more]
RPS3A	1.505e-86	57.02	ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC...	[more]
RPS3A	1.505e-86	57.02	ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC...	[more]
RPS3A	2.911e-73	58.25	ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC...	[more]

BLAST of 40S ribosomal protein S3a vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2


Match Name	E-value	Identity	Description
rps-1	4.077e-93	56.49	40S ribosomal protein S3a [Source:UniProtKB/Swiss...	[more]
rps-1	4.077e-93	56.49	40S ribosomal protein S3a [Source:UniProtKB/Swiss...	[more]

BLAST of 40S ribosomal protein S3a vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3


Match Name	E-value	Identity	Description
RpS3A	9.447e-81	47.97	gene:FBgn0017545 transcript:FBtr0308296	[more]
RpS3A	9.447e-81	47.97	gene:FBgn0017545 transcript:FBtr0089175	[more]
RpS3A	2.569e-62	47.80	gene:FBgn0017545 transcript:FBtr0089176	[more]

BLAST of 40S ribosomal protein S3a vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rps3a	6.633e-95	55.28	ribosomal protein S3A [Source:NCBI gene;Acc:337240...	[more]
rps3a	6.633e-95	55.28	ribosomal protein S3A [Source:NCBI gene;Acc:337240...	[more]
rps3a	6.633e-95	55.28	ribosomal protein S3A [Source:NCBI gene;Acc:337240...	[more]

BLAST of 40S ribosomal protein S3a vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ppp6r3	9.219e-94	56.38	protein phosphatase 6 regulatory subunit 3 [Source...	[more]
ppp6r3	1.580e-63	58.08	protein phosphatase 6 regulatory subunit 3 [Source...	[more]

BLAST of 40S ribosomal protein S3a vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1


Match Name	E-value	Identity	Description
Rps3a1	5.152e-95	56.79	ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:...	[more]

BLAST of 40S ribosomal protein S3a vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q5DAA3\|RS3A_SCHJA	4.140e-100	57.92	40S ribosomal protein S3a OS=Schistosoma japonicum...	[more]
sp\|P61246\|RS3A_FELCA	1.848e-94	56.79	40S ribosomal protein S3a (Fragment) OS=Felis catu...	[more]
sp\|P61247\|RS3A_HUMAN	1.894e-94	56.79	40S ribosomal protein S3a OS=Homo sapiens OX=9606 ...	[more]
sp\|Q56JV9\|RS3A_BOVIN	1.894e-94	56.79	40S ribosomal protein S3a OS=Bos taurus OX=9913 GN...	[more]
sp\|P49242\|RS3A_RAT	3.376e-94	57.20	40S ribosomal protein S3a OS=Rattus norvegicus OX=...	[more]

BLAST of 40S ribosomal protein S3a vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A183A0Z6	3.927e-101	60.83	40S ribosomal protein S3a OS=Echinostoma caproni O...	[more]
A0A504Z354	8.009e-99	60.00	40S ribosomal protein S3a OS=Fasciola gigantica OX...	[more]
A0A2H1CUG1	8.009e-99	60.00	40S ribosomal protein S3a OS=Fasciola hepatica OX=...	[more]
C1L8J7	9.547e-98	57.92	40S ribosomal protein S3a OS=Schistosoma japonicum...	[more]
A0A0R3UG15	9.737e-98	59.17	40S ribosomal protein S3a OS=Mesocestoides corti O...	[more]

BLAST of 40S ribosomal protein S3a vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
rps3a	3.882e-96	57.96	ribosomal protein S3A [Source:NCBI gene;Acc:103024...	[more]

BLAST of 40S ribosomal protein S3a vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
rps3a	4.017e-75	47.04	ribosomal protein S3A [Source:NCBI gene;Acc:337240...	[more]

BLAST of 40S ribosomal protein S3a vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
RPS1A	1.106e-69	46.05	Ribosomal protein 10 (rp10) of the small (40S) sub...	[more]
RPS1B	1.246e-69	46.05	Ribosomal protein 10 (rp10) of the small (40S) sub...	[more]

BLAST of 40S ribosomal protein S3a vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO41784	2.594e-84	52.87	40S ribosomal protein S3a [Source:UniProtKB/Swiss...	[more]

BLAST of 40S ribosomal protein S3a vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1


Match Name	E-value	Identity	Description
rps3a	2.186e-90	55.10	ribosomal protein S3A [Source:NCBI gene;Acc:100049...	[more]

BLAST of 40S ribosomal protein S3a vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000066540.1	0.000e+0	100.00	SMESG000066540.1	[more]
SMESG000066537.1	2.708e-166	100.00	SMESG000066537.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30019273 ID=SMED30019273|Name=40S ribosomal protein S3a|organism=Schmidtea mediterranea sexual|type=transcript|length=882bp
TAACAAAACAACTAATTTGTTTAAATTATATTAAAGTAGTTAATATAAAA
ATATTTAAATTAAAATGGCTTTAGGTAAAACAACCAAAAAGGCACAGAAA
CTTGGACCCAAGAAGGGAAAGAAGAAGGCATCTGATCCATTTTTGAAAAA
AGAATGGTTTGTTATTAGAGCACCATCAATGTTCCCTAAAAGATCATTTG
CCAGAACTATCGTTACTAAAACTCAAGGAACTAAAATTGCCAGTGAAGGC
CTTAAAAACCGAGTCGTAACAATGAGTTTAGGAGAATTGAATGAGAAAAC
TGAGGATACCTTCAGAAAATTCTCACTTCAAATTGAAGATGTTCAAGGAA
ATCAATGTTTAACTTCATTCAAAGGAATGCAATTGACAACTGACAAAATG
TGCTCAATGGTCAAAAAATGGCAAACAACCATTGAATGCTTTGCTGATGT
AAAGACAACTGATAACTTCCATTTGAGAGTGTTTGTTATCGCTTTCACCA
AAAAAGCACCAAATCAATTGAAAAAGCACACTTATGCACAAGCCCAACAA
ATCAAATCAATTAGAGATATTATGCGCGAAGTGATTCAAACTGAAGTAGC
TTCATGCGATATCAAAGAAGTAGTGAAGAAGCTTTGCATTGATTCAATTG
GAAAAGATATTGCACGAAAATGTTCTTACATTTTCCCATTGACTGACTGC
TGTGTAAGAAAAGTCAAGGTCATTAGAAAACCAAAAATGGATTTGACTAA
ACTCATGGATCTACACGGAGACTCTGCAACTACTATTTCAGCAACAGGTG
AAATTATTGAGCGACCTGATGGACATGAACCTCCAGTTCAAACTTCTGTT
TAAATAAATATAAATTTTTGGATTAAAAAAAA

protein sequence of SMED30019273-orf-1

>SMED30019273-orf-1 ID=SMED30019273-orf-1|Name=SMED30019273-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=263bp
MALGKTTKKAQKLGPKKGKKKASDPFLKKEWFVIRAPSMFPKRSFARTIV
TKTQGTKIASEGLKNRVVTMSLGELNEKTEDTFRKFSLQIEDVQGNQCLT
SFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAPN
QLKKHTYAQAQQIKSIRDIMREVIQTEVASCDIKEVVKKLCIDSIGKDIA
RKCSYIFPLTDCCVRKVKVIRKPKMDLTKLMDLHGDSATTISATGEIIER
PDGHEPPVQTSV*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **cellular component**
Term	Definition
GO:0022627	cytosolic small ribosomal subunit
GO:0005840	ribosome
GO:0005737	cytoplasm
GO:0030529	intracellular ribonucleoprotein complex
GO:0005622	intracellular

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000429	neoblast
PLANA:0002032	epidermal cell
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR001593	Ribosomal_S3Ae

Vocabulary: **biological process**
Term	Definition
GO:0006412	translation

Vocabulary: **molecular function**
Term	Definition
GO:0003735	structural constituent of ribosome

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001593	Ribosomal protein S3Ae	SMART	SM01397	Ribosomal_S3Ae_2	coord: 1..185 e-value: 4.8E-87 score: 305.2
IPR001593	Ribosomal protein S3Ae	PFAM	PF01015	Ribosomal_S3Ae	coord: 1..185 e-value: 8.9E-69 score: 231.1
None	No IPR available	PANTHER	PTHR11830	40S RIBOSOMAL PROTEIN S3A	coord: 1..224
None	No IPR available	PANTHER	PTHR11830:SF26	40S RIBOSOMAL PROTEIN S3A	coord: 1..224