DUF3421 domain-containing protein

Overview


Name	DUF3421 domain-containing protein
Smed ID	SMED30019264
Length (bp)	675

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of DUF3421 domain-containing protein (SMED30019264) t-SNE clustered cells

Violin plots show distribution of expression levels for DUF3421 domain-containing protein (SMED30019264) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of DUF3421 domain-containing protein (SMED30019264) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for DUF3421 domain-containing protein (SMED30019264) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30019264

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 10

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
intestinal phagocyte	SMED30019264	h1SMcG0002525	Contig776	GPL15192	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30019264	h1SMcG0009297	Contig776	GPL15192	PMID:23079596 Forsthoefel et al., 2012
gut	SMED30019264	h1SMcG0009297	dd_Smed_v4_2061_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30019264	h1SMcG0009297	dd_Smed_v4_2061_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30019264	h1SMcG0009297	Contig42059	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30019264	h1SMcG0009297	Contig42059	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30019264	h1SMcG0009297	Contig17650	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30019264	h1SMcG0009297	Contig17650	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30019264	h1SMcG0009296	Contig17650	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30019264	h1SMcG0009296	Contig17650	newmark_ests	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of DUF3421 domain-containing protein vs. Ensembl Fly
Match: CG13321 (gene:FBgn0033787 transcript:FBtr0345371)

HSP 1 Score: 98.9821 bits (245), Expect = 1.051e-24
Identity = 54/137 (39.42%), Postives = 76/137 (55.47%), Query Frame = 3

Query:  234 GHIPNDSVNAGNS------YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEW-KSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLC 623
            G +P  ++ AG+       ++ RA +NGE +P K+V G+  AY+ + G+EIS  ++EVLV  H      + W  S+ GSV      +G + EG PLY+GR      L  GK  P H C YIPY  QE+R E Y+VL 
Sbjct:   13 GSLPPGAILAGHDSDQDPIFVGRAYHNGEMLPAKVVPGKQQAYVPWGGQEISKHDFEVLVGDH------FSWIPSSGGSVPPHAIQVGQTGEGEPLYVGRGYFQGSLTPGKVHPSHQCLYIPYGGQEHRLEAYEVLV 143

HSP 2 Score: 91.2781 bits (225), Expect = 7.367e-22
Identity = 51/145 (35.17%), Postives = 70/145 (48.28%), Query Frame = 3

Query:  210 LSWQKASNGHIPNDSVNAGNS------YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSVIGGSD-EGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLC 623
             SW  +S G +P  ++  G +      Y+ R  + G   PGK+     C YI Y G+E     YEVLV       Q   W ++ G  I  G+V+GG D +G  +Y+GRA     LL  K  P  GC Y+PY   E  K DY++L 
Sbjct:   76 FSWIPSSGGSVPPHAIQVGQTGEGEPLYVGRGYFQGSLTPGKVHPSHQCLYIPYGGQEHRLEAYEVLV-------QPETWIASSGRGIVPGTVVGGHDADGDQIYVGRAYHEGDLLPAKVIPNKGCAYVPYGGGEVVKHDYELLA 213

HSP 3 Score: 83.1889 bits (204), Expect = 8.689e-19
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 3

Query:  273 YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEW-KSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLC 623
            Y+ RA + G+ +P K++  + CAY+ Y G E+   +YE+L       G  Y W   + G+V     + G + +G PL+IGRA     L  GK    H C YIP+D +E R + Y+VL 
Sbjct:  173 YVGRAYHEGDLLPAKVIPNKGCAYVPYGGGEVVKHDYELLA------GYGYGWVHDSHGNVPGNAVLCGRTSDGEPLFIGRAHHHGSLTPGKIHQSHHCLYIPFDGEEVRIDHYEVLV 284

HSP 4 Score: 51.9878 bits (123), Expect = 1.023e-7
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 3

Query:  216 WQKASNGHIPNDSVNAGNS------YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLV 395
            W   S+G++P ++V  G +      +I RA ++G   PGKI +  +C YI +DG+E+    YEVLV
Sbjct:  219 WVHDSHGNVPGNAVLCGRTSDGEPLFIGRAHHHGSLTPGKIHQSHHCLYIPFDGEEVRIDHYEVLV 284

[Close]

BLAST of DUF3421 domain-containing protein vs. Ensembl Fly
Match: CG13321 (gene:FBgn0033787 transcript:FBtr0087792)

HSP 1 Score: 98.9821 bits (245), Expect = 1.051e-24
Identity = 54/137 (39.42%), Postives = 76/137 (55.47%), Query Frame = 3

Query:  234 GHIPNDSVNAGNS------YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEW-KSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLC 623
            G +P  ++ AG+       ++ RA +NGE +P K+V G+  AY+ + G+EIS  ++EVLV  H      + W  S+ GSV      +G + EG PLY+GR      L  GK  P H C YIPY  QE+R E Y+VL 
Sbjct:   13 GSLPPGAILAGHDSDQDPIFVGRAYHNGEMLPAKVVPGKQQAYVPWGGQEISKHDFEVLVGDH------FSWIPSSGGSVPPHAIQVGQTGEGEPLYVGRGYFQGSLTPGKVHPSHQCLYIPYGGQEHRLEAYEVLV 143

HSP 2 Score: 91.2781 bits (225), Expect = 7.367e-22
Identity = 51/145 (35.17%), Postives = 70/145 (48.28%), Query Frame = 3

Query:  210 LSWQKASNGHIPNDSVNAGNS------YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSVIGGSD-EGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLC 623
             SW  +S G +P  ++  G +      Y+ R  + G   PGK+     C YI Y G+E     YEVLV       Q   W ++ G  I  G+V+GG D +G  +Y+GRA     LL  K  P  GC Y+PY   E  K DY++L 
Sbjct:   76 FSWIPSSGGSVPPHAIQVGQTGEGEPLYVGRGYFQGSLTPGKVHPSHQCLYIPYGGQEHRLEAYEVLV-------QPETWIASSGRGIVPGTVVGGHDADGDQIYVGRAYHEGDLLPAKVIPNKGCAYVPYGGGEVVKHDYELLA 213

HSP 3 Score: 83.1889 bits (204), Expect = 8.689e-19
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 3

Query:  273 YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEW-KSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLC 623
            Y+ RA + G+ +P K++  + CAY+ Y G E+   +YE+L       G  Y W   + G+V     + G + +G PL+IGRA     L  GK    H C YIP+D +E R + Y+VL 
Sbjct:  173 YVGRAYHEGDLLPAKVIPNKGCAYVPYGGGEVVKHDYELLA------GYGYGWVHDSHGNVPGNAVLCGRTSDGEPLFIGRAHHHGSLTPGKIHQSHHCLYIPFDGEEVRIDHYEVLV 284

HSP 4 Score: 51.9878 bits (123), Expect = 1.023e-7
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 3

Query:  216 WQKASNGHIPNDSVNAGNS------YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLV 395
            W   S+G++P ++V  G +      +I RA ++G   PGKI +  +C YI +DG+E+    YEVLV
Sbjct:  219 WVHDSHGNVPGNAVLCGRTSDGEPLFIGRAHHHGSLTPGKIHQSHHCLYIPFDGEEVRIDHYEVLV 284

[Close]

BLAST of DUF3421 domain-containing protein vs. Ensembl Fly
Match: CG31086 (gene:FBgn0051086 transcript:FBtr0084989)

HSP 1 Score: 93.2041 bits (230), Expect = 7.676e-24
Identity = 55/143 (38.46%), Postives = 73/143 (51.05%), Query Frame = 3

Query:  213 SWQKASNGHIPNDSVNAGNS------YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSV-IGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVL 620
            SW   SNG IP  +V AG+       +I RA Y  + +P KI+  +  AY+ Y  +E+    YEVL       G  YEW       +  G+V +G + +G  LY GR   A  L  GK  P HGC YIPYDS+E +   Y+VL
Sbjct:    5 SWLHFSNGAIPQAAVVAGHDSDGDTIFIGRAFYCNDMLPAKIIPNKGKAYVAYANQEVELENYEVL------SGFNYEWLPAENGEVPPGAVKVGQNVDGETLYAGRGYHAGSLTVGKVHPSHGCLYIPYDSEEVKIFAYEVL 141

[Close]

BLAST of DUF3421 domain-containing protein vs. Ensembl Fly
Match: CG31086 (gene:FBgn0051086 transcript:FBtr0307341)

HSP 1 Score: 93.2041 bits (230), Expect = 7.676e-24
Identity = 55/143 (38.46%), Postives = 73/143 (51.05%), Query Frame = 3

Query:  213 SWQKASNGHIPNDSVNAGNS------YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSV-IGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVL 620
            SW   SNG IP  +V AG+       +I RA Y  + +P KI+  +  AY+ Y  +E+    YEVL       G  YEW       +  G+V +G + +G  LY GR   A  L  GK  P HGC YIPYDS+E +   Y+VL
Sbjct:    5 SWLHFSNGAIPQAAVVAGHDSDGDTIFIGRAFYCNDMLPAKIIPNKGKAYVAYANQEVELENYEVL------SGFNYEWLPAENGEVPPGAVKVGQNVDGETLYAGRGYHAGSLTVGKVHPSHGCLYIPYDSEEVKIFAYEVL 141

[Close]

BLAST of DUF3421 domain-containing protein vs. Ensembl Fly
Match: CG32633 (gene:FBgn0052633 transcript:FBtr0073800)

HSP 1 Score: 93.2041 bits (230), Expect = 1.496e-22
Identity = 54/149 (36.24%), Postives = 77/149 (51.68%), Query Frame = 3

Query:  216 WQKASNGHIPNDSVNAGNS------YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSV-IGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLCFLKRRV 641
            W   SNG +P ++V AG+       Y+ RA ++ + +P K++  +  AY+ Y  +E     YEVL       G  YEW S     +  G+V +G + +G  LY GR   A  L  GK  P HGC YIPYDS E +   Y+VLC  +R +
Sbjct:    6 WMHFSNGSVPPNAVVAGHDSDGDTIYVGRAFFSNDMLPAKVIPNKGKAYVAYAREEHELENYEVL------SGYNYEWLSAENGEVPPGAVKVGRNVDGEYLYAGRGYHAGSLTMGKVHPSHGCLYIPYDSDEVKIFAYEVLCQPERWI 148

HSP 2 Score: 73.9442 bits (180), Expect = 2.181e-15
Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = 3

Query:  216 WQKASNGHIPNDSVNAGNS------YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSVIGGSD-EGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLC 623
            W   +  +IP+ ++ AG+       Y+ R   NG+ +P K+V  +  AY  Y   E   ++ +VL       G  + W       +  G++  G + +G PLY+GRA   + L  GK  P HGC YIP+  +E R E+Y+VL 
Sbjct:  147 WIDTTATNIPDGALVAGHDSNGDTIYVGRVFRNGDLLPAKVVPAKGKAYAAYAQAEHELTDVQVLT------GSGFRWVPASHGNVAPGALSSGPNVDGEPLYVGRAIYCDSLSVGKIHPSHGCIYIPFGGEEVRLENYEVLV 283

[Close]

BLAST of DUF3421 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q66S13|NATT4_THANI (Natterin-4 OS=Thalassophryne nattereri OX=289382 PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 2.324e-6
Identity = 44/144 (30.56%), Postives = 64/144 (44.44%), Query Frame = 3

Query:  210 LSWQKASNGHIPNDSVNAGNSYIARAVY-------NGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVL 620
            L W +  NGHIP+++V   N+Y+ R  Y        G Y P K   G +C Y  Y   E     + +LV+  NF  +  EWK   G  + + +V    D    LY+ +    NK   GK    H   Y+P+   E +  +Y VL
Sbjct:   76 LEWVRW-NGHIPSNAVKISNTYVGREDYVCRVGCEAGYYTPKK---GPSCFYP-YGFTEQHSKMFHILVNRDNF--EILEWKWKTGGEVPENAVKACRD----LYVAK----NKYGLGKLHQSHHVFYLPWKGTEYKYNEYYVL 204

[Close]

BLAST of DUF3421 domain-containing protein vs. TrEMBL
Match: A0A1I8I9L7 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig020479g1 PE=4 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.618e-34
Identity = 66/162 (40.74%), Postives = 98/162 (60.49%), Query Frame = 3

Query:  165 MSKVKSAAGKGIEISLSWQKASNGHIPNDSVN-AGNSYIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFG---GQAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKE-DYDVLCFLKR 635
            MS  KS+ GKG+++ LSW  A+NG IP  +V+  G+ ++AR   +GE +PGK+  G N  Y  YDG+E  C  Y+VL +T N G   G  +EW +  G+   K ++I GSD+GRPLY+ +A +  +  AGK+ P++G  Y      E+ KE D++VL    R
Sbjct:    1 MSTFKSSGGKGVDLCLSWVNAANGEIPAGAVSIGGDVFVARCFSDGELLPGKVAAGHNSCYAPYDGEEKCCDTYQVLCETCNHGLTGGPGFEWVAWSGNTAPKHALISGSDQGRPLYVAKANIDGEWCAGKYIPDYGKAYFSCGGAEHEKEDDFEVLVMCTR 162

[Close]

BLAST of DUF3421 domain-containing protein vs. TrEMBL
Match: A0A1I8H8B2 (DUF3421 domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig012514g1 PE=4 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.973e-31
Identity = 65/155 (41.94%), Postives = 96/155 (61.94%), Query Frame = 3

Query:  165 MSKVKSAAGKGIEISLSWQKASNGHIPNDSVNAG-NSYIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTH-NFGGQAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENR-KEDYDVL 620
            MS+V     +GIE+ LSW  ASNG IP  +V AG + Y+ARA + GE++PGK+  G   AY+ Y  +E+  SEYEVLV +     G  Y+W   +G+ + KG+++ G D G PLY+ RA    ++  GK QP+  C YI +  +E++  +DY+VL
Sbjct:    1 MSRVNHNDIEGIELCLSWHPASNGDIPAGAVKAGEDCYVARAKHEGEWVPGKLSAGHTSAYVPYGDEEVPYSEYEVLVSSEIGHFGCGYQWLPAKGNSVPKGALVSGYDNGAPLYVARATFEGEVCCGKAQPDLECAYISWGGKEHKIVDDYEVL 155

[Close]

BLAST of DUF3421 domain-containing protein vs. TrEMBL
Match: Q5DHE4 (SJCHGC04453 protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.991e-31
Identity = 62/151 (41.06%), Postives = 92/151 (60.93%), Query Frame = 3

Query:  189 GKGIEISLSWQKASNGHIPNDSVN-AGNSYIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFG-GQAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLCFLKR 635
            GKGI+I LSW  A++G++P++++N +G+ Y+ R+ ++G +IPGK V G N AY   +G+EI   EYEVL DT   G  + YEW+S  G  + K ++I G     PLYI R  V  ++  GK    H C Y P+   E+   DY+VL + K+
Sbjct:    5 GKGIQIPLSWVPATDGNVPHNAINVSGDIYVIRSKHDGHWIPGKAVIGHNTAYYPMNGQEIKTREYEVLCDTSLSGHNKGYEWESESGGNVPKNAIIAGMSGNDPLYIARGSVNGEVCVGKVHYGHNCAYFPWGGNEHSVNDYEVLVWKKK 155

[Close]

BLAST of DUF3421 domain-containing protein vs. TrEMBL
Match: A0A267GMN7 (DUF3421 domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig020417g1 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.050e-30
Identity = 59/151 (39.07%), Postives = 94/151 (62.25%), Query Frame = 3

Query:  183 AAGKGIEISLSWQKASNGHIPNDSVNAGNS-YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTH-NFGGQAYEWKSTRGSVITKGSVIGG-SDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLCF 626
            A+G   +++LSW  A  G IPN ++  G+  ++ARA + GE IPGK   G + AY+ Y G+E + S+YE+L DTH    G  Y W+   G  + +G++IGG S + +P YIGR+++  +++AGK    HGC Y P+  QE+R  ++++L  
Sbjct:   14 ASGGNPQVTLSWIPARGGQIPNGAIQVGHGVFVARAQHAGELIPGKASMGHHAAYVSYGGQEHAVSDYEILCDTHMQCFGCNYTWERCHGRSVPRGALIGGYSADRKPYYIGRSQINGEMVAGKVFEPHGCAYFPWGGQEHRSNEFEILVL 164

[Close]

BLAST of DUF3421 domain-containing protein vs. TrEMBL
Match: A0A1I8H2V3 (DUF3421 domain-containing protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.627e-30
Identity = 59/151 (39.07%), Postives = 93/151 (61.59%), Query Frame = 3

Query:  183 AAGKGIEISLSWQKASNGHIPNDSVNAGNS-YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTH-NFGGQAYEWKSTRGSVITKGSVIGG-SDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLCF 626
            A+G   +++LSW  A  G IPN ++  G+  ++ARA + GE IPGK   G   AY+ Y G+E + S+YE+L DTH    G  Y W+   G  + +G++IGG S + +P YIGR+++  +++AGK    HGC Y P+  QE+R  ++++L  
Sbjct:   14 ASGGNPQVTLSWIPARGGQIPNGAIQVGHGVFVARAQHAGELIPGKASMGHQAAYVSYGGQEHAVSDYEILCDTHMQCFGCNYTWERCHGRSVPRGALIGGYSADRQPYYIGRSQINGEMVAGKVFEPHGCAYFPWGGQEHRSNEFEILVL 164

[Close]

BLAST of DUF3421 domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000055806.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000027.1:7684441:7697076:-1 gene:ENSAMXG00000043142.1 transcript:ENSAMXT00000055806.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 52.373 bits (124), Expect = 9.767e-8
Identity = 48/146 (32.88%), Postives = 66/146 (45.21%), Query Frame = 3

Query:  204 ISLSWQKASNGHIPNDSVNAGNSYIARAVY-------NGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVL 620
            +SL W    NG +PN +VN  N Y  R  Y        G Y P K   G  C Y  Y   E   S++EVLV+   F  +  EW+S     +   SV   S     +Y+G+    NK   GK  P H   ++P++ +E   + YDVL
Sbjct:   50 VSLKWV-TWNGSLPNGAVNIYNGYTKRTDYICKYNCEAGFYTPSK---GPYC-YYPYADSEYPASKFEVLVNEDYF--EFLEWRSGSYGSVPPNSVRTCSRGD--IYVGK----NKYGLGKVVPRHEAFFLPWEGKEYWYKKYDVL 182

[Close]

BLAST of DUF3421 domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000043153.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000027.1:7684441:7688885:-1 gene:ENSAMXG00000043142.1 transcript:ENSAMXT00000043153.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 51.9878 bits (123), Expect = 1.193e-7
Identity = 48/146 (32.88%), Postives = 66/146 (45.21%), Query Frame = 3

Query:  204 ISLSWQKASNGHIPNDSVNAGNSYIARAVY-------NGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVL 620
            +SL W    NG +PN +VN  N Y  R  Y        G Y P K   G  C Y  Y   E   S++EVLV+   F  +  EW+S     +   SV   S     +Y+G+    NK   GK  P H   ++P++ +E   + YDVL
Sbjct:   87 VSLKWV-TWNGSLPNGAVNIYNGYTKRTDYICKYNCEAGFYTPSK---GPYC-YYPYADSEYPASKFEVLVNEDYF--EFLEWRSGSYGSVPPNSVRTCSRGD--IYVGK----NKYGLGKVVPRHEAFFLPWEGKEYWYKKYDVL 219

[Close]

BLAST of DUF3421 domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000045654.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000027.1:7684441:7697076:-1 gene:ENSAMXG00000043142.1 transcript:ENSAMXT00000045654.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 51.9878 bits (123), Expect = 1.420e-7
Identity = 48/146 (32.88%), Postives = 66/146 (45.21%), Query Frame = 3

Query:  204 ISLSWQKASNGHIPNDSVNAGNSYIARAVY-------NGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVL 620
            +SL W    NG +PN +VN  N Y  R  Y        G Y P K   G  C Y  Y   E   S++EVLV+   F  +  EW+S     +   SV   S     +Y+G+    NK   GK  P H   ++P++ +E   + YDVL
Sbjct:   78 VSLKWV-TWNGSLPNGAVNIYNGYTKRTDYICKYNCEAGFYTPSK---GPYC-YYPYADSEYPASKFEVLVNEDYF--EFLEWRSGSYGSVPPNSVRTCSRGD--IYVGK----NKYGLGKVVPRHEAFFLPWEGKEYWYKKYDVL 210

[Close]

BLAST of DUF3421 domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000027077.2 (natterin-3-like [Source:NCBI gene;Acc:103027322])

HSP 1 Score: 49.6766 bits (117), Expect = 8.212e-7
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 3

Query:  195 GIEISLSWQKASNGHIPNDSVNAGNSYIARAVY-------NGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKS-TRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLCFLK 632
            G  ++L+W  + +G +PN +V   N Y  R  Y        G Y P K   G  C Y  +  KE    E+EVLV+  NF  +  EWK+ + GSV        G   G  +++G+    NK   GK  P+    ++P++  E   + YDVL   K
Sbjct:   80 GDNVNLNWT-SWDGSLPNGAVGIYNGYTKRTDYICKYNCEAGFYTPSK---GPYCNY-AWGNKEYHAPEFEVLVNVDNF--EFLEWKAGSYGSVPNYAVRTCG---GIGIFVGK----NKYGLGKVVPQFEAFFLPWEGDEYWYKKYDVLAINK 219

[Close]

BLAST of DUF3421 domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000034725.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000027.1:7691520:7695470:-1 gene:ENSAMXG00000032799.1 transcript:ENSAMXT00000034725.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.2914 bits (116), Expect = 8.995e-7
Identity = 47/156 (30.13%), Postives = 64/156 (41.03%), Query Frame = 3

Query:  174 VKSAAGKGIEISLSWQKASNGHIPNDSVNAGNSYIARAVY-------NGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVL 620
            V +   K   ++L W    NG +PN +V   NSY  R  Y        G Y P K   G  C Y  Y   E    ++EVLV+   F  +  EWKS     +   SV               R  NK   GK  P+H   ++P++ +E   + YDVL
Sbjct:   16 VSAPRRKSDNVNLKWV-TWNGLLPNGAVKIYNSYTERTEYICKSDCEAGFYTPSK---GPYC-YYPYGDSEYLALKFEVLVNEDYF--EFLEWKSGSWGSVPPNSV---------------RTCNKYGLGKVHPKHEAFFLPWEGKEYWYKWYDVL 149

[Close]

BLAST of DUF3421 domain-containing protein vs. Planmine SMEST
Match: SMESG000029906.1 (SMESG000029906.1)

HSP 1 Score: 322.398 bits (825), Expect = 8.170e-114
Identity = 156/159 (98.11%), Postives = 158/159 (99.37%), Query Frame = 3

Query:  165 MSKVKSAAGKGIEISLSWQKASNGHIPNDSVNAGNSYIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLCFLKRRV 641
            MSKVKSAAGKGIEISLSWQKASNGHIPNDSVNAGNSYIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKS+RGSVI KGSVIGGSDEGRPLYIGRARVA+KLLAGKFQPEHGCTYIPYDSQENRKEDYDVLCFLKRRV
Sbjct:    1 MSKVKSAAGKGIEISLSWQKASNGHIPNDSVNAGNSYIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSSRGSVIPKGSVIGGSDEGRPLYIGRARVADKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLCFLKRRV 159

[Close]

BLAST of DUF3421 domain-containing protein vs. Planmine SMEST
Match: SMESG000029910.1 (SMESG000029910.1)

HSP 1 Score: 163.696 bits (413), Expect = 3.887e-51
Identity = 74/160 (46.25%), Postives = 111/160 (69.38%), Query Frame = 3

Query:  165 MSKVKSAAGKGIEISLSWQKASNGHIPNDSVNA-GNSYIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLCFLKRRV 641
            MSKV +  G+ +EIS+SWQ+A +G IP  +V A G+ ++ARA +NGEYIPGK+V G +  ++CYDGKEI+ S Y+VLVDT       YEWK +    I   ++IGG+D G+PL+I ++ V  + + GKF P+HGC ++PY+  E  K ++++LC LK+ +
Sbjct:    1 MSKVITQYGRAVEISVSWQEAHDGSIPLHAVKADGSCFVARAKHNGEYIPGKLVTGHSHVFVCYDGKEITKSHYQVLVDTSILPTTGYEWKWSEDLEIPPNAIIGGTDNGQPLFIVKSIVEGETVVGKFHPDHGCAHVPYEGLEFEKNEFEILCSLKKHL 160

[Close]

BLAST of DUF3421 domain-containing protein vs. Planmine SMEST
Match: SMESG000074396.1 (SMESG000074396.1)

HSP 1 Score: 158.688 bits (400), Expect = 3.107e-49
Identity = 73/161 (45.34%), Postives = 113/161 (70.19%), Query Frame = 3

Query:  165 MSKVKSAAGKGIEISLSWQKASNGHIPNDSVNAG-NSYIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGG-QAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLCFLKRRV 641
            MSKV S  G G+E+SLSW KA+NG IP  +V AG  +++ARA ++G+YIPGK V G N  ++ + G E + + YE+LV++   GG + YEWK T G  + KG+++GG ++G PLY+ R+ + ++++ GK+ P+HGC Y+PY  +E+R E+ +VLCF  + V
Sbjct:    1 MSKVSSQYGAGVELSLSWVKANNGSIPPKAVRAGGQTFVARAKHDGQYIPGKFVEGYNEVFVSFGGVEHAKNYYEILVESSMLGGHKGYEWKWTNGENVPKGALVGGLNDGAPLYVARSFIEDQMVVGKYYPQHGCAYMPYGGEEHRVENAEVLCFTTKHV 161

[Close]

BLAST of DUF3421 domain-containing protein vs. Planmine SMEST
Match: SMESG000074378.1 (SMESG000074378.1)

HSP 1 Score: 158.688 bits (400), Expect = 3.107e-49
Identity = 73/161 (45.34%), Postives = 113/161 (70.19%), Query Frame = 3

Query:  165 MSKVKSAAGKGIEISLSWQKASNGHIPNDSVNAG-NSYIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGG-QAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLCFLKRRV 641
            MSKV S  G G+E+SLSW KA+NG IP  +V AG  +++ARA ++G+YIPGK V G N  ++ + G E + + YE+LV++   GG + YEWK T G  + KG+++GG ++G PLY+ R+ + ++++ GK+ P+HGC Y+PY  +E+R E+ +VLCF  + V
Sbjct:    1 MSKVSSQYGAGVELSLSWVKANNGSIPPKAVRAGGQTFVARAKHDGQYIPGKFVEGYNEVFVSFGGVEHAKNYYEILVESSMLGGHKGYEWKWTNGENVPKGALVGGLNDGAPLYVARSFIEDQMVVGKYYPQHGCAYMPYGGEEHRVENAEVLCFTTKHV 161

[Close]

BLAST of DUF3421 domain-containing protein vs. Planmine SMEST
Match: SMESG000029913.1 (SMESG000029913.1)

HSP 1 Score: 153.68 bits (387), Expect = 2.988e-47
Identity = 72/160 (45.00%), Postives = 110/160 (68.75%), Query Frame = 3

Query:  165 MSKVKSAAGKGIEISLSWQKASNGHIPNDSVNAGNS-YIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKGSVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLCFLKRRV 641
            MSK+ S  G+ +EIS+SW    +G+IP+ +V+AG+S Y+ARA +  EYIPGK V+G   AY+ YDGKEI+ SEY++LVD+   GG + EW  TRG+ I   S++GG+D  RPLYI ++ +  +++ GK+ PE  C + PY  +E+RK   ++LC   +++
Sbjct:    1 MSKIVSEYGRSVEISVSWIDCQDGNIPDKAVSAGDSCYVARAKHLDEYIPGKFVQGHTSAYVSYDGKEIAKSEYQILVDSSILGGPSIEWHYTRGNQIPYRSIVGGTDNERPLYIAKSAINGEVVVGKYLPEFACGFFPYGGKEHRKSMVEILCCTTKQL 160

The following BLAST results are available for this feature:

BLAST of DUF3421 domain-containing protein vs. Ensembl Human
BLAST of DUF3421 domain-containing protein vs. Ensembl Celegans
BLAST of DUF3421 domain-containing protein vs. Ensembl Fly
BLAST of DUF3421 domain-containing protein vs. Ensembl Zebrafish
BLAST of DUF3421 domain-containing protein vs. Ensembl Xenopus
BLAST of DUF3421 domain-containing protein vs. Ensembl Mouse
BLAST of DUF3421 domain-containing protein vs. UniProt/SwissProt
BLAST of DUF3421 domain-containing protein vs. TrEMBL
BLAST of DUF3421 domain-containing protein vs. Ensembl Cavefish
BLAST of DUF3421 domain-containing protein vs. Ensembl Sea Lamprey
BLAST of DUF3421 domain-containing protein vs. Ensembl Yeast
BLAST of DUF3421 domain-containing protein vs. Ensembl Nematostella
BLAST of DUF3421 domain-containing protein vs. Ensembl Medaka
BLAST of DUF3421 domain-containing protein vs. Planmine SMEST

BLAST of DUF3421 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of DUF3421 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of DUF3421 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
CG13321	1.051e-24	39.42	gene:FBgn0033787 transcript:FBtr0345371	[more]
CG13321	1.051e-24	39.42	gene:FBgn0033787 transcript:FBtr0087792	[more]
CG31086	7.676e-24	38.46	gene:FBgn0051086 transcript:FBtr0084989	[more]
CG31086	7.676e-24	38.46	gene:FBgn0051086 transcript:FBtr0307341	[more]
CG32633	1.496e-22	36.24	gene:FBgn0052633 transcript:FBtr0073800	[more]

BLAST of DUF3421 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of DUF3421 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of DUF3421 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of DUF3421 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1


Match Name	E-value	Identity	Description
sp\|Q66S13\|NATT4_THANI	2.324e-6	30.56	Natterin-4 OS=Thalassophryne nattereri OX=289382 P...	[more]

BLAST of DUF3421 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1I8I9L7	5.618e-34	40.74	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A1I8H8B2	1.973e-31	41.94	DUF3421 domain-containing protein OS=Macrostomum l...	[more]
Q5DHE4	4.991e-31	41.06	SJCHGC04453 protein OS=Schistosoma japonicum OX=61...	[more]
A0A267GMN7	2.050e-30	39.07	DUF3421 domain-containing protein OS=Macrostomum l...	[more]
A0A1I8H2V3	3.627e-30	39.07	DUF3421 domain-containing protein OS=Macrostomum l...	[more]

BLAST of DUF3421 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000055806.1	9.767e-8	32.88	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000043153.1	1.193e-7	32.88	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000045654.1	1.420e-7	32.88	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000027077.2	8.212e-7	31.17	natterin-3-like [Source:NCBI gene;Acc:103027322]	[more]
ENSAMXT00000034725.1	8.995e-7	30.13	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]

BLAST of DUF3421 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of DUF3421 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of DUF3421 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of DUF3421 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of DUF3421 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000029906.1	8.170e-114	98.11	SMESG000029906.1	[more]
SMESG000029910.1	3.887e-51	46.25	SMESG000029910.1	[more]
SMESG000074396.1	3.107e-49	45.34	SMESG000074396.1	[more]
SMESG000074378.1	3.107e-49	45.34	SMESG000074378.1	[more]
SMESG000029913.1	2.988e-47	45.00	SMESG000029913.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30019264 ID=SMED30019264|Name=DUF3421 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=675bp
GTTATCATGAAATTAGATTTGTCAAATATTAAGCTGTTTATGAAATATAC
TTAAATGTATGTGAGACCTTTGACCTCTGATGACGTCATAACCCGAATAT
CATAGATAAGAGATATATTTAAATAATCAACTGAATTAAAATTTAAAGGA
ACTCTTTGATTGAAATGAGTAAGGTAAAAAGTGCGGCAGGTAAAGGTATA
GAAATTAGTTTGTCATGGCAAAAGGCATCGAATGGACACATTCCTAATGA
TTCTGTAAATGCTGGCAATTCTTACATCGCAAGAGCAGTTTATAATGGAG
AATACATTCCTGGAAAGATTGTACGTGGTGAAAATTGCGCCTATATCTGT
TACGATGGCAAAGAAATAAGCTGTAGTGAATATGAGGTTTTAGTTGACAC
ACACAATTTTGGAGGTCAGGCTTATGAATGGAAGTCCACTAGAGGCTCTG
TAATTACTAAAGGATCAGTCATTGGAGGATCCGACGAAGGAAGACCTCTT
TACATTGGAAGGGCTAGAGTAGCAAATAAGCTATTGGCCGGTAAGTTTCA
ACCTGAACATGGATGTACTTACATACCATATGACTCTCAAGAAAATAGGA
AAGAGGATTATGACGTTTTATGCTTTTTGAAAAGACGTGTTTAAGAAAAA
TATAAGTTTTCGAGTTAAAAAAAAA

protein sequence of SMED30019264-orf-1

>SMED30019264-orf-1 ID=SMED30019264-orf-1|Name=SMED30019264-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=160bp
MSKVKSAAGKGIEISLSWQKASNGHIPNDSVNAGNSYIARAVYNGEYIPG
KIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSTRGSVITKG
SVIGGSDEGRPLYIGRARVANKLLAGKFQPEHGCTYIPYDSQENRKEDYD
VLCFLKRRV*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0003116	parenchymal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR006616	DM9_repeat
IPR024518	DUF3421

Main menu

DUF3421 domain-containing protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 10

Owlery

blazegraph-runner