SMED30019210

Overview
NameSMED30019210
Smed IDSMED30019210
Length (bp)487
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30019210 (SMED30019210) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30019210 (SMED30019210) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30019210 (SMED30019210) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30019210 (SMED30019210) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30019210

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30019210SMESG000036067.1 dd_Smed_v4_9473_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30019210SMESG000036067.1 dd_Smed_v4_9473_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30019210SMESG000036067.1 dd_Smed_v4_9473_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30019210SMESG000036067.1 dd_Smed_v4_9473_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30019210 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002942:1094..1583 -2191
v31.005383:52593..53082 +1939
v31.002942:1430..1880 -678
Homology
[Close]
BLAST of SMED30019210 vs. Planmine SMEST
Match: SMESG000036067.1 (SMESG000036067.1)

HSP 1 Score: 268.085 bits (684), Expect = 1.769e-85
Identity = 151/162 (93.21%), Postives = 156/162 (96.30%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQIEKLELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFNQSETEKSILIAEKSPESQLFIDSTKGANTNEIGALEYKKNXXXXXXXXXGFNNPKGYCYLNC 487
            QLKMEDSNSS EK+ LELNRS+ ++K LQ ENNNIKSGFASQIE+LELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFNQSETEKSILIAEKSPESQLFIDSTK ANTNEIGALEYKKNIPVIPVPPIGFNNPKGYCYLNC
Sbjct:  630 QLKMEDSNSSNEKMLLELNRSEYKFKSLQIENNNIKSGFASQIEQLELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFNQSETEKSILIAEKSPESQLFIDSTKAANTNEIGALEYKKNIPVIPVPPIGFNNPKGYCYLNC 791

HSP 2 Score: 53.5286 bits (127), Expect = 1.136e-8
Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQIEKLELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENE 253
            Q++++DSN S E+LKLEL +S+++++ LQ++NNNI+S FA QIE+L+  + E + +   LQ ++   K       + NLQ ENE
Sbjct:  531 QMQIKDSNYSNERLKLELKQSENKFQSLQNDNNNIESRFAEQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHSQERNLQLENE 614

HSP 3 Score: 45.4394 bits (106), Expect = 5.677e-6
Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQ-----------IEKLELKMN------EINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSS------------NNHAECKLKFNQSETEKSILIAE 337
            + ++++ N S++ LK +LN+  ++ K LQDEN++IKS   S+           IE++  KM       E++E N+IL +NY +  L           +EN+KL+S+            N + E KLKFNQS  EK  L +E
Sbjct:  295 EFQLDNLNRSVKNLKSQLNKMGNKCKDLQDENDHIKSELESRKNCDSPTKNANIEQIIFKMKNLNLNEEMDERNQILLHNYDERYL-----------RENKKLESTIKEIEKKNKILQNKYEEYKLKFNQSNHEKQNLTSE 424
[Close]
BLAST of SMED30019210 vs. Planmine SMEST
Match: SMESG000036067.1 (SMESG000036067.1)

HSP 1 Score: 268.085 bits (684), Expect = 1.798e-85
Identity = 151/162 (93.21%), Postives = 156/162 (96.30%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQIEKLELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFNQSETEKSILIAEKSPESQLFIDSTKGANTNEIGALEYKKNXXXXXXXXXGFNNPKGYCYLNC 487
            QLKMEDSNSS EK+ LELNRS+ ++K LQ ENNNIKSGFASQIE+LELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFNQSETEKSILIAEKSPESQLFIDSTK ANTNEIGALEYKKNIPVIPVPPIGFNNPKGYCYLNC
Sbjct:  625 QLKMEDSNSSNEKMLLELNRSEYKFKSLQIENNNIKSGFASQIEQLELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFNQSETEKSILIAEKSPESQLFIDSTKAANTNEIGALEYKKNIPVIPVPPIGFNNPKGYCYLNC 786

HSP 2 Score: 53.5286 bits (127), Expect = 1.113e-8
Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQIEKLELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENE 253
            Q++++DSN S E+LKLEL +S+++++ LQ++NNNI+S FA QIE+L+  + E + +   LQ ++   K       + NLQ ENE
Sbjct:  526 QMQIKDSNYSNERLKLELKQSENKFQSLQNDNNNIESRFAEQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHSQERNLQLENE 609

HSP 3 Score: 45.4394 bits (106), Expect = 5.673e-6
Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQ-----------IEKLELKMN------EINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSS------------NNHAECKLKFNQSETEKSILIAE 337
            + ++++ N S++ LK +LN+  ++ K LQDEN++IKS   S+           IE++  KM       E++E N+IL +NY +  L           +EN+KL+S+            N + E KLKFNQS  EK  L +E
Sbjct:  290 EFQLDNLNRSVKNLKSQLNKMGNKCKDLQDENDHIKSELESRKNCDSPTKNANIEQIIFKMKNLNLNEEMDERNQILLHNYDERYL-----------RENKKLESTIKEIEKKNKILQNKYEEYKLKFNQSNHEKQNLTSE 419
[Close]
BLAST of SMED30019210 vs. Planmine SMEST
Match: SMESG000036067.1 (SMESG000036067.1)

HSP 1 Score: 268.085 bits (684), Expect = 3.685e-85
Identity = 151/162 (93.21%), Postives = 156/162 (96.30%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQIEKLELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFNQSETEKSILIAEKSPESQLFIDSTKGANTNEIGALEYKKNXXXXXXXXXGFNNPKGYCYLNC 487
            QLKMEDSNSS EK+ LELNRS+ ++K LQ ENNNIKSGFASQIE+LELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFNQSETEKSILIAEKSPESQLFIDSTK ANTNEIGALEYKKNIPVIPVPPIGFNNPKGYCYLNC
Sbjct:  630 QLKMEDSNSSNEKMLLELNRSEYKFKSLQIENNNIKSGFASQIEQLELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFNQSETEKSILIAEKSPESQLFIDSTKAANTNEIGALEYKKNIPVIPVPPIGFNNPKGYCYLNC 791

HSP 2 Score: 53.9138 bits (128), Expect = 8.266e-9
Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQIEKLELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENE 253
            Q++++DSN S E+LKLEL +S+++++ LQ++NNNI+S FA QIE+L+  + E + +   LQ ++   K       + NLQ ENE
Sbjct:  531 QMQIKDSNYSNERLKLELKQSENKFQSLQNDNNNIESRFAEQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHSQERNLQLENE 614

HSP 3 Score: 45.8246 bits (107), Expect = 4.341e-6
Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQ-----------IEKLELKMN------EINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSS------------NNHAECKLKFNQSETEKSILIAE 337
            + ++++ N S++ LK +LN+  ++ K LQDEN++IKS   S+           IE++  KM       E++E N+IL +NY +  L           +EN+KL+S+            N + E KLKFNQS  EK  L +E
Sbjct:  295 EFQLDNLNRSVKNLKSQLNKMGNKCKDLQDENDHIKSELESRKNCDSPTKNANIEQIIFKMKNLNLNEEMDERNQILLHNYDERYL-----------RENKKLESTIKEIEKKNKILQNKYEEYKLKFNQSNHEKQNLTSE 424
[Close]
BLAST of SMED30019210 vs. Planmine SMEST
Match: SMESG000036067.1 (SMESG000036067.1)

HSP 1 Score: 267.7 bits (683), Expect = 4.319e-85
Identity = 151/162 (93.21%), Postives = 156/162 (96.30%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQIEKLELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFNQSETEKSILIAEKSPESQLFIDSTKGANTNEIGALEYKKNXXXXXXXXXGFNNPKGYCYLNC 487
            QLKMEDSNSS EK+ LELNRS+ ++K LQ ENNNIKSGFASQIE+LELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFNQSETEKSILIAEKSPESQLFIDSTK ANTNEIGALEYKKNIPVIPVPPIGFNNPKGYCYLNC
Sbjct:  625 QLKMEDSNSSNEKMLLELNRSEYKFKSLQIENNNIKSGFASQIEQLELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFNQSETEKSILIAEKSPESQLFIDSTKAANTNEIGALEYKKNIPVIPVPPIGFNNPKGYCYLNC 786

HSP 2 Score: 53.9138 bits (128), Expect = 8.182e-9
Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQIEKLELKMNEINEENKILQNNYSQSKLNQSEIDKINLQKENE 253
            Q++++DSN S E+LKLEL +S+++++ LQ++NNNI+S FA QIE+L+  + E + +   LQ ++   K       + NLQ ENE
Sbjct:  526 QMQIKDSNYSNERLKLELKQSENKFQSLQNDNNNIESRFAEQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHSQERNLQLENE 609

HSP 3 Score: 45.8246 bits (107), Expect = 4.770e-6
Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQ-----------IEKLELKMN------EINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSS------------NNHAECKLKFNQSETEKSILIAE 337
            + ++++ N S++ LK +LN+  ++ K LQDEN++IKS   S+           IE++  KM       E++E N+IL +NY +  L           +EN+KL+S+            N + E KLKFNQS  EK  L +E
Sbjct:  290 EFQLDNLNRSVKNLKSQLNKMGNKCKDLQDENDHIKSELESRKNCDSPTKNANIEQIIFKMKNLNLNEEMDERNQILLHNYDERYL-----------RENKKLESTIKEIEKKNKILQNKYEEYKLKFNQSNHEKQNLTSE 419
[Close]
BLAST of SMED30019210 vs. Planmine SMEST
Match: SMESG000038519.1 (SMESG000038519.1)

HSP 1 Score: 115.931 bits (289), Expect = 1.513e-31
Identity = 83/189 (43.92%), Postives = 111/189 (58.73%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQIEKLELKMNEINEENKILQNNYSQSKLN-----------QSEIDKINLQKENEKLKSS-NNHAECKLKFNQSETEKSI---------LIAEKSPESQLFIDSTK------GANTNEIGALEYKKNXXXXXXXXXGFNNPKGYCYLNC 487
            QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKS FASQIE+LE  + +INEE +ILQN Y + KL            Q + +  NL  + +KL+S  +N  + ++K  + E + ++         L +  +  S+  ++  +      G+ +N      Y      I   PIGF NPKG+C+LNC
Sbjct:  118 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSAFASQIEQLESIIKQINEERQILQNKYDECKLRFNQSNHEEQILQWQTEMKNLTTKYDKLQSDRDNEFQAQIKREKREIQSALNAVLKENDRLNSRINSRSRSNLEVKRRDRRSFGSESNMSNVTPYNYQNNNILRDPIGFENPKGFCFLNC 306

HSP 2 Score: 62.003 bits (149), Expect = 8.451e-12
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 2 
Query:    2 QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQIEKLELKMNEINEENKILQNNYS--QSKLNQSEIDKINLQKENEKLKSSNNHAE-----CKLKFNQS 307
            QLKM++SN SI+KLKL+L++S+++ K LQ+E NNIKSGFA+QIE+L+  + E + +   LQ ++   + KL  S+   + L+ ENE +K+  +  E     C+LK   S
Sbjct:   17 QLKMDNSNRSIKKLKLQLSQSENKCKSLQNE-NNIKSGFAAQIEQLQSALKESDRKMGSLQRDFGDCKEKLKHSQERNLQLENENETVKTKFHQFEEITKDCQLKMEDS 124
The following BLAST results are available for this feature:
BLAST of SMED30019210 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30019210 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000036067.11.769e-8593.21SMESG000036067.1[more]
SMESG000036067.11.798e-8593.21SMESG000036067.1[more]
SMESG000036067.13.685e-8593.21SMESG000036067.1[more]
SMESG000036067.14.319e-8593.21SMESG000036067.1[more]
SMESG000038519.11.513e-3143.92SMESG000038519.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30019210 ID=SMED30019210|Name=SMED30019210|organism=Schmidtea mediterranea sexual|type=transcript|length=487bp
CCAATTGAAAATGGAGGATTCAAATAGTTCTATTGAGAAACTGAAATTGG
AATTGAATCGATCAAAAGACGAATACAAAAGGTTGCAGGATGAAAATAAT
AATATCAAATCCGGATTTGCGTCACAAATTGAGAAATTGGAATTAAAGAT
GAATGAAATTAACGAGGAAAATAAAATTCTGCAAAACAATTATTCTCAAA
GCAAATTGAACCAATCAGAAATAGATAAAATAAATTTGCAAAAAGAAAAT
GAAAAATTAAAATCGTCAAATAATCACGCCGAGTGTAAATTAAAATTCAA
TCAATCAGAAACAGAGAAATCGATTTTGATTGCGGAAAAGTCACCCGAAT
CACAACTTTTTATCGATTCCACTAAAGGAGCAAATACTAATGAAATTGGT
GCTTTGGAATATAAAAAAAATATCCCAGTTATTCCGGTTCCACCAATTGG
CTTCAATAACCCAAAAGGCTACTGCTACCTAAATTGT
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protein sequence of SMED30019210-orf-1

>SMED30019210-orf-1 ID=SMED30019210-orf-1|Name=SMED30019210-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=162bp
QLKMEDSNSSIEKLKLELNRSKDEYKRLQDENNNIKSGFASQIEKLELKM
NEINEENKILQNNYSQSKLNQSEIDKINLQKENEKLKSSNNHAECKLKFN
QSETEKSILIAEKSPESQLFIDSTKGANTNEIGALEYKKNIPVIPVPPIG
FNNPKGYCYLNC
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000099neuron
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 36..96