SOXP-1

Overview


Name	SOXP-1 (AFD29619.1)
Smed ID	SMED30019097
Length (bp)	1596

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SOXP-1 (SMED30019097) t-SNE clustered cells

Violin plots show distribution of expression levels for SOXP-1 (SMED30019097) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SOXP-1 (SMED30019097) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SOXP-1 (SMED30019097) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Expression Details

SOXP-1 ( SOXP-1 ) is expressed during Stage 4, Stage 5, Stage 6, Stage 7 and Stage 8 in the sigma neoblast, blastomere and neoblast

Click to see image symbols and abbreviations


Abbreviation or symbol	Definition
O	oral hemisphere
A	aboral hemisphere
D	dorsal
V	ventral
L	lateral
black arrowhead	embryonic pharynx
red arrowhead	definitive pharynx
black arrows	primitive gut
yellow arrows	primitive ectoderm cells
cyan arrows	brain
cyan arrowheads	nerve cords
blue arrowheads	eye progenitors (trail cells)
purple arrowheads	eyes
scale bar	100 µm

Anatomical Expression

PAGE et. al., 2020

SMED30019097

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 42

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
neoblast	SMED30019097	h1SMcG0006253	SMED30019097	smed_20140614	PMID:29906446 Zeng et al., 2018
pigment cell	SMED30019097	h1SMcG0006253	SmedASXL_013552	SmedAsxl_ww_GCZZ01	PMID:29158443 He et al., 2017
X1 cell	SMED30019097	h1SMcG0006253	SmedASXL_013552	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30019097	h1SMcG0006253	SmedASXL_013552	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30019097	h1SMcG0006253	SmedASXL_071363	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
protonephridia	SMED30019097	h1SMcG0006253	dd_Smed_v4_7227_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30019097	h1SMcG0006253	dd_Smed_v4_7227_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30019097	h1SMcG0006253	dd_Smed_v4_7227_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30019097	h1SMcG0006253	dd_Smed_v4_7227_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30019097	h1SMcG0006253	dd_Smed_v4_7227_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30019097	h1SMcG0006253	Contig37301	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30019097	h1SMcG0006253	Contig37301	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30019097	h1SMcG0006253	Contig3942	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30019097	h1SMcG0006253	Contig3942	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
sigma neoblast	SMED30019097	h1SMcG0006253	SMED30019097	smed_20140614	PMID:30194301 Mihaylova et al., 2018
sigma neoblast	SMED30019097	h1SMcG0006253	JQ425151	smed_ncbi_20240424	PMID:30194301 Mihaylova et al., 2018
neoblast	SMED30019097	h1SMcG0006253	SMED30019097	smed_20140614	PMID:28072387 Davies et al., 2017
neoblast	SMED30019097	h1SMcG0006253	SMED30019097	smed_20140614	PMID:28072387 Davies et al., 2017
neoblast	SMED30019097	h1SMcG0006253	SMED30019097	smed_20140614	PMID:28072387 Davies et al., 2017
blastomere	SMED30019097	h1SMcG0006253	SMED30019097	smed_20140614	PMID:28072387 Davies et al., 2017
blastomere	SMED30019097	h1SMcG0006253	SMED30019097	smed_20140614	PMID:28072387 Davies et al., 2017
neoblast	SMED30019097	h1SMcG0006253	AFD29619.1	smed_ncbi_20240424	PMID:28072387 Davies et al., 2017
neoblast	SMED30019097	h1SMcG0006253	AFD29619.1	smed_ncbi_20240424	PMID:28072387 Davies et al., 2017
neoblast	SMED30019097	h1SMcG0006253	AFD29619.1	smed_ncbi_20240424	PMID:28072387 Davies et al., 2017
blastomere	SMED30019097	h1SMcG0006253	AFD29619.1	smed_ncbi_20240424	PMID:28072387 Davies et al., 2017
blastomere	SMED30019097	h1SMcG0006253	AFD29619.1	smed_ncbi_20240424	PMID:28072387 Davies et al., 2017
neoblast	SMED30019097	h1SMcG0006253	JQ425151.1	smed_ncbi_20240424	PMID:28072387 Davies et al., 2017
neoblast	SMED30019097	h1SMcG0006253	JQ425151.1	smed_ncbi_20240424	PMID:28072387 Davies et al., 2017
neoblast	SMED30019097	h1SMcG0006253	JQ425151.1	smed_ncbi_20240424	PMID:28072387 Davies et al., 2017
blastomere	SMED30019097	h1SMcG0006253	JQ425151.1	smed_ncbi_20240424	PMID:28072387 Davies et al., 2017
blastomere	SMED30019097	h1SMcG0006253	JQ425151.1	smed_ncbi_20240424	PMID:28072387 Davies et al., 2017
sigma neoblast	SMED30019097	h1SMcG0006253	JQ425151	smed_ncbi_20240424	PMID:25017721 van Wolfswinkel et al., 2014
sigma neoblast	SMED30019097	h1SMcG0006253	JQ425151	smed_ncbi_20240424	PMID:25017721 van Wolfswinkel et al., 2014
zeta neoblast	SMED30019097	h1SMcG0006253	dd_Smed_v4_7227_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
neoblast	SMED30019097	h1SMcG0006253	SmWIOct06_023556	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30019097	h1SMcG0006253	SMED30019097	smed_20140614	PMID:22385657 Wagner et al., 2012
neoblast	SMED30019097	h1SMcG0006253	SMED_11833_V2_1	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30019097	h1SMcG0006253	SMED_11833_V2_1	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30019097	h1SMcG0006253	SMED_11833_V2_2	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30019097	h1SMcG0006253	SMED_11833_V2_2	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30019097	h1SMcG0006253	SMED_17522_V2_1	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30019097	h1SMcG0006253	SMED_17522_V2_1	GPL14150	PMID:22385657 Wagner et al., 2012

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of SOXP-1 vs. Ensembl Human
Match: SOX13 (SRY-box transcription factor 13 [Source:HGNC Symbol;Acc:HGNC:11192])

HSP 1 Score: 75.0998 bits (183), Expect = 1.145e-13
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN+ K  Y EE  RL++ H  ++PDYKY+P+ +
Sbjct:  428 MNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPK 498

[Close]

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN+ K  Y EE  RL++ H  ++PDYKY+P+ +
Sbjct:  428 MNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPK 498

[Close]

BLAST of SOXP-1 vs. Ensembl Human
Match: SOX5 (SRY-box transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:11201])

HSP 1 Score: 73.559 bits (179), Expect = 2.168e-13
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN  K  Y EE  RL++ H  ++PDYKY+P+ +
Sbjct:  174 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPK 244

[Close]

BLAST of SOXP-1 vs. Ensembl Human
Match: SOX6 (SRY-box transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:16421])

HSP 1 Score: 73.9442 bits (180), Expect = 3.726e-13
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  601 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 671

[Close]

BLAST of SOXP-1 vs. Ensembl Human
Match: SOX6 (SRY-box transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:16421])

HSP 1 Score: 73.9442 bits (180), Expect = 3.751e-13
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  598 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 668

[Close]

BLAST of SOXP-1 vs. Ensembl Celegans
Match: egl-13 (Transcription factor egl-13 [Source:UniProtKB/Swiss-Prot;Acc:Q23045])

HSP 1 Score: 72.7886 bits (177), Expect = 7.519e-14
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM+++R  RR IL  +PD  NS +SK LG  WK ++N  K  Y EE  RL++LH  + PDY+Y+P+ +
Sbjct:  176 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLHMEQHPDYRYRPRPK 246

[Close]

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM+++R  RR IL  +PD  NS +SK LG  WK ++N  K  Y EE  RL++LH  + PDY+Y+P+ +
Sbjct:  176 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLHMEQHPDYRYRPRPK 246

[Close]

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM+++R  RR IL  +PD  NS +SK LG  WK ++N  K  Y EE  RL++LH  + PDY+Y+P+ +
Sbjct:  176 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLHMEQHPDYRYRPRPK 246

[Close]

BLAST of SOXP-1 vs. Ensembl Celegans
Match: egl-13 (Transcription factor egl-13 [Source:UniProtKB/Swiss-Prot;Acc:Q23045])

HSP 1 Score: 72.7886 bits (177), Expect = 8.187e-14
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM+++R  RR IL  +PD  NS +SK LG  WK ++N  K  Y EE  RL++LH  + PDY+Y+P+ +
Sbjct:  179 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLHMEQHPDYRYRPRPK 249

[Close]

BLAST of SOXP-1 vs. Ensembl Celegans
Match: egl-13 (Transcription factor egl-13 [Source:UniProtKB/Swiss-Prot;Acc:Q23045])

HSP 1 Score: 72.7886 bits (177), Expect = 8.355e-14
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM+++R  RR IL  +PD  NS +SK LG  WK ++N  K  Y EE  RL++LH  + PDY+Y+P+ +
Sbjct:  182 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLHMEQHPDYRYRPRPK 252

[Close]

BLAST of SOXP-1 vs. Ensembl Fly
Match: Sox102F (gene:FBgn0039938 transcript:FBtr0089252)

HSP 1 Score: 72.0182 bits (175), Expect = 5.830e-13
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL   PD  NS +SK LG  WK ++N  K  Y EE  RL++LH  + PDY+Y+P+ +
Sbjct:  389 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNADKQPYYEEQSRLSKLHMEQHPDYRYRPRPK 459

[Close]

BLAST of SOXP-1 vs. Ensembl Fly
Match: Sox102F (gene:FBgn0039938 transcript:FBtr0334488)

HSP 1 Score: 72.0182 bits (175), Expect = 5.830e-13
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL   PD  NS +SK LG  WK ++N  K  Y EE  RL++LH  + PDY+Y+P+ +
Sbjct:  389 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNADKQPYYEEQSRLSKLHMEQHPDYRYRPRPK 459

[Close]

BLAST of SOXP-1 vs. Ensembl Fly
Match: Sox102F (gene:FBgn0039938 transcript:FBtr0334489)

HSP 1 Score: 72.0182 bits (175), Expect = 5.830e-13
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL   PD  NS +SK LG  WK ++N  K  Y EE  RL++LH  + PDY+Y+P+ +
Sbjct:  389 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNADKQPYYEEQSRLSKLHMEQHPDYRYRPRPK 459

[Close]

BLAST of SOXP-1 vs. Ensembl Fly
Match: Sox102F (gene:FBgn0039938 transcript:FBtr0100600)

HSP 1 Score: 72.0182 bits (175), Expect = 6.264e-13
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL   PD  NS +SK LG  WK ++N  K  Y EE  RL++LH  + PDY+Y+P+ +
Sbjct:  427 MNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNADKQPYYEEQSRLSKLHMEQHPDYRYRPRPK 497

[Close]

BLAST of SOXP-1 vs. Ensembl Fly
Match: Sox100B (gene:FBgn0024288 transcript:FBtr0085735)

HSP 1 Score: 70.8626 bits (172), Expect = 1.163e-12
Identity = 39/118 (33.05%), Postives = 64/118 (54.24%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGRAIYDRQPCTTERSNSTSATDEENGKDNNSVQDGRRSSDIEN 763
            +N FM++++  RR +   +P   NS+LSK LG LWK + +  K  + E A++L   H  E PDYKYQP+++  R   +    +  +     + SAT   +GK  +S  +G+R +   N
Sbjct:   81 MNAFMVWAQAARRVMSKQYPHLQNSELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDYKYQPRRKKARVLPSQQSGEGGSPGPEMTLSATMGSSGKPRSSNSNGQRRAGKGN 198

[Close]

BLAST of SOXP-1 vs. Ensembl Zebrafish
Match: sox6 (SRY-box transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6])

HSP 1 Score: 75.0998 bits (183), Expect = 9.749e-14
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  563 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 633

[Close]

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  563 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 633

[Close]

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  563 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 633

[Close]

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  563 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 633

[Close]

BLAST of SOXP-1 vs. Ensembl Zebrafish
Match: sox6 (SRY-box transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6])

HSP 1 Score: 75.0998 bits (183), Expect = 1.116e-13
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  580 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 650

[Close]

BLAST of SOXP-1 vs. Ensembl Xenopus
Match: spidr (scaffold protein involved in DNA repair [Source:Xenbase;Acc:XB-GENE-5813435])

HSP 1 Score: 73.9442 bits (180), Expect = 3.403e-13
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  511 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 581

[Close]

BLAST of SOXP-1 vs. Ensembl Xenopus
Match: spidr (scaffold protein involved in DNA repair [Source:Xenbase;Acc:XB-GENE-5813435])

HSP 1 Score: 73.559 bits (179), Expect = 3.728e-13
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  506 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 576

[Close]

BLAST of SOXP-1 vs. Ensembl Xenopus
Match: spidr (scaffold protein involved in DNA repair [Source:Xenbase;Acc:XB-GENE-5813435])

HSP 1 Score: 73.559 bits (179), Expect = 3.740e-13
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  573 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 643

[Close]

BLAST of SOXP-1 vs. Ensembl Xenopus
Match: spidr (scaffold protein involved in DNA repair [Source:Xenbase;Acc:XB-GENE-5813435])

HSP 1 Score: 73.559 bits (179), Expect = 3.800e-13
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  571 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 641

[Close]

BLAST of SOXP-1 vs. Ensembl Xenopus
Match: spidr (scaffold protein involved in DNA repair [Source:Xenbase;Acc:XB-GENE-5813435])

HSP 1 Score: 73.559 bits (179), Expect = 3.842e-13
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  586 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 656

[Close]

BLAST of SOXP-1 vs. Ensembl Mouse
Match: Sox13 (SRY (sex determining region Y)-box 13 [Source:MGI Symbol;Acc:MGI:98361])

HSP 1 Score: 75.0998 bits (183), Expect = 8.108e-14
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN+ K  Y EE  RL++ H  ++PDYKY+P+ +
Sbjct:  420 MNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPK 490

[Close]

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN+ K  Y EE  RL++ H  ++PDYKY+P+ +
Sbjct:  420 MNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPK 490

[Close]

BLAST of SOXP-1 vs. Ensembl Mouse
Match: Sox13 (SRY (sex determining region Y)-box 13 [Source:MGI Symbol;Acc:MGI:98361])

HSP 1 Score: 74.7146 bits (182), Expect = 8.844e-14
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN+ K  Y EE  RL++ H  ++PDYKY+P+ +
Sbjct:  401 MNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPK 471

[Close]

BLAST of SOXP-1 vs. Ensembl Mouse
Match: Sox5 (SRY (sex determining region Y)-box 5 [Source:MGI Symbol;Acc:MGI:98367])

HSP 1 Score: 73.559 bits (179), Expect = 1.517e-13
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN  K  Y EE  RL++ H  ++PDYKY+P+ +
Sbjct:  189 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPK 259

[Close]

BLAST of SOXP-1 vs. Ensembl Mouse
Match: Sox6 (SRY (sex determining region Y)-box 6 [Source:MGI Symbol;Acc:MGI:98368])

HSP 1 Score: 73.9442 bits (180), Expect = 2.459e-13
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  582 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 652

[Close]

BLAST of SOXP-1 vs. UniProt/SwissProt
Match: sp|Q9UN79|SOX13_HUMAN (Transcription factor SOX-13 OS=Homo sapiens OX=9606 GN=SOX13 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 5.498e-13
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN+ K  Y EE  RL++ H  ++PDYKY+P+ +
Sbjct:  428 MNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPK 498

[Close]

BLAST of SOXP-1 vs. UniProt/SwissProt
Match: sp|Q04891|SOX13_MOUSE (Transcription factor SOX-13 OS=Mus musculus OX=10090 GN=Sox13 PE=1 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 5.671e-13
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK +TN+ K  Y EE  RL++ H  ++PDYKY+P+ +
Sbjct:  420 MNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPK 490

[Close]

BLAST of SOXP-1 vs. UniProt/SwissProt
Match: sp|P36394|SRY_RAT (Sex-determining region Y protein (Fragment) OS=Rattus norvegicus OX=10116 GN=Sry PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.255e-12
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVR 628
            +N FM++SR  R  +    P   NS++SK+LG  WK +T   K  + +EA+RL  LH  ++P+YKYQP +RV+
Sbjct:    9 MNAFMVWSRGERHKLAQQNPSMQNSEISKQLGYQWKSLTEAEKRPFFQEAQRLKTLHREKYPNYKYQPHRRVK 81

[Close]

BLAST of SOXP-1 vs. UniProt/SwissProt
Match: sp|Q23045|EGL13_CAEEL (Transcription factor egl-13 OS=Caenorhabditis elegans OX=6239 GN=egl-13 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.346e-12
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM+++R  RR IL  +PD  NS +SK LG  WK ++N  K  Y EE  RL++LH  + PDY+Y+P+ +
Sbjct:  333 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLHMEQHPDYRYRPRPK 403

[Close]

BLAST of SOXP-1 vs. UniProt/SwissProt
Match: sp|P47792|SX19A_DANRE (Transcription factor Sox-19a OS=Danio rerio OX=7955 GN=sox19a PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.455e-12
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVR 628
            +N FM++SR  RR +    P   NS++SK LG  WK +T+  K  + +EAKRL  LH  E+PDYKY+P+++ +
Sbjct:   57 MNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRPFIDEAKRLRALHMKEYPDYKYKPRRKTK 129

[Close]

BLAST of SOXP-1 vs. TrEMBL
Match: H9CXU8 (SOXP-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 614.379 bits (1583), Expect = 0.000e+0
Identity = 318/334 (95.21%), Postives = 318/334 (95.21%), Query Frame = 2

Query:  215 MLCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSXXXXXXXXXXXXLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGRAIYDRQPCTTERSNSTSATDEENGKDNNSVQDGRRSSDIENQYIRYSVLGKNIVKRECQSFNSPLKSDNVKLETQEQDFIQAMPKPLNVRITNYNENSIFLRQQRLPSSSTMYLLPSENLIISNGIMGSQDLGEDYCRELYIINDFFPENVNIDDEIDITGNIFSNDLDLEWSEIDENYKQDLPNLNSLFQH 1216
            MLCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSRKRRRRPTTPRPLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGRAIYDRQPCTTERSNSTSATDEENGKDNNSVQDGRRSSDIENQYIRYSVLGKNIVKRECQSFNSPLKSDNVKLETQEQDFIQAMPKPLNVRITNYNENSIFLRQQRLPSSSTMYLLPSENLIISNGIMGSQDL                ENVNIDDEIDITGNIFSNDLDLEWSEIDENYKQDLPNLNSLFQH
Sbjct:    1 MLCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSRKRRRRPTTPRPLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGRAIYDRQPCTTERSNSTSATDEENGKDNNSVQDGRRSSDIENQYIRYSVLGKNIVKRECQSFNSPLKSDNVKLETQEQDFIQAMPKPLNVRITNYNENSIFLRQQRLPSSSTMYLLPSENLIISNGIMGSQDL----------------ENVNIDDEIDITGNIFSNDLDLEWSEIDENYKQDLPNLNSLFQH 318

[Close]

BLAST of SOXP-1 vs. TrEMBL
Match: A0A3P7P8C9 (HMG box domain-containing protein (Fragment) OS=Dibothriocephalus latus OX=60516 GN=DILT_LOCUS10137 PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.011e-33
Identity = 66/135 (48.89%), Postives = 97/135 (71.85%), Query Frame = 2

Query:  221 CSNCSNNQDT-LKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSXXXXXXXXXXXXLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            C  C + +D+ ++ W+ HLA  H +P EW SE+A  L     + PYT++T+S+K+R R + PRPLN+FMIF++HIRRN+L VF  ASNS +S++LG +W+ +   +K  Y+ EA RL ++H +EFPDYKYQPKK+
Sbjct:    6 CLACPSARDSGVEAWICHLAEAHVMPTEWTSERAARLVGPAARTPYTLITESKKKRCRGSVPRPLNSFMIFAQHIRRNVLRVFGKASNSVISRQLGEIWRTLPRPVKERYDAEAARLVKIHQIEFPDYKYQPKKK 140

[Close]

BLAST of SOXP-1 vs. TrEMBL
Match: A0A087W088 (Transcription factor SOX 14 OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000191100 PE=4 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.269e-32
Identity = 70/134 (52.24%), Postives = 97/134 (72.39%), Query Frame = 2

Query:  221 CSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSXXXXXXXXXXXXLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            C+ C + Q  L  W+ HL   H LP EW S++A  L      +PYT +T+S+KRRR+ + PRPLN+FM+F++HIRRN+L V  +ASNS LS++LGI+W+ V   IK+ Y+EEA +L ++H LEFP+YKYQPKKR
Sbjct:    4 CAECPSAQSGLHAWIRHLTDFHALPTEWPSDRALRLTGAAAAKPYTTITESKKRRRKDSVPRPLNSFMLFAQHIRRNVLRVHNEASNSVLSQQLGIVWRSVPRAIKNCYDEEAAKLVKIHQLEFPNYKYQPKKR 137

[Close]

BLAST of SOXP-1 vs. TrEMBL
Match: A0A0R3WGL7 (HMG box domain-containing protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS10011 PE=4 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.596e-32
Identity = 70/134 (52.24%), Postives = 97/134 (72.39%), Query Frame = 2

Query:  221 CSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSXXXXXXXXXXXXLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            C++C   Q  L  W+ HL   H LP EW S++A  L      +PYT +T+S+KRRR+ + PRPLN+FM+F++HIRRN+L V  +ASNS LS++LGI+W+ V   IK+ Y+EEA +L ++H LEFP+YKYQPKKR
Sbjct:   39 CADCPPAQSGLHTWIRHLTDFHALPTEWPSDRALRLTGTAAAKPYTTITESKKRRRKDSVPRPLNSFMLFAQHIRRNVLRVHNEASNSVLSQQLGIVWRSVPRAIKNCYDEEAAKLVKIHQLEFPNYKYQPKKR 172

[Close]

BLAST of SOXP-1 vs. TrEMBL
Match: A0A068WSN2 (Transcription factor SOX 14 OS=Echinococcus granulosus OX=6210 GN=EgrG_000191100 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.780e-32
Identity = 70/134 (52.24%), Postives = 96/134 (71.64%), Query Frame = 2

Query:  221 CSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSXXXXXXXXXXXXLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            C+ C   Q  L  W+ HL   H LP EW S++A  L      +PYT +T+S+KRRR+ + PRPLN+FM+F++HIRRN+L V  +ASNS LS++LGI+W+ V   IK+ Y+EEA +L ++H LEFP+YKYQPKKR
Sbjct:    4 CAECPPAQGGLHAWIRHLTDFHALPTEWPSDRALRLTGAAAAKPYTTITESKKRRRKDSVPRPLNSFMLFAQHIRRNVLRVHNEASNSVLSQQLGIVWRSVPRAIKNCYDEEAAKLVKIHQLEFPNYKYQPKKR 137

[Close]

BLAST of SOXP-1 vs. Ensembl Cavefish
Match: sox19b (transcription factor Sox-19b [Source:NCBI gene;Acc:103045346])

HSP 1 Score: 72.0182 bits (175), Expect = 1.590e-13
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGR--AIYDRQPCTTERSNSTS 691
            +N FM++SR  RR +    P   NS++SK LG  WK +T+  K  + +EAKRL  +H  E+PDYKY+P+++ +   +  A   + P TT +  + S
Sbjct:   58 MNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYKPRRKTKPLLKKDAPPGKYPLTTAQGQALS 153

[Close]

BLAST of SOXP-1 vs. Ensembl Cavefish
Match: sox13 (SRY-box transcription factor 13 [Source:NCBI gene;Acc:103022571])

HSP 1 Score: 73.559 bits (179), Expect = 2.175e-13
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL++ H   +PDYKY+P+ +
Sbjct:  433 MNAFMVWAKDERRRILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQHLERYPDYKYKPRPK 503

[Close]

BLAST of SOXP-1 vs. Ensembl Cavefish
Match: sox13 (SRY-box transcription factor 13 [Source:NCBI gene;Acc:103022571])

HSP 1 Score: 73.559 bits (179), Expect = 2.257e-13
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL++ H   +PDYKY+P+ +
Sbjct:  441 MNAFMVWAKDERRRILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQHLERYPDYKYKPRPK 511

[Close]

BLAST of SOXP-1 vs. Ensembl Cavefish
Match: sox6 (SRY-box transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6])

HSP 1 Score: 73.559 bits (179), Expect = 2.404e-13
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL+++H  ++P+YKY+P+ +
Sbjct:  582 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 652

[Close]

BLAST of SOXP-1 vs. Ensembl Cavefish
Match: sox13 (SRY-box transcription factor 13 [Source:NCBI gene;Acc:103022571])

HSP 1 Score: 73.559 bits (179), Expect = 2.561e-13
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL++ H   +PDYKY+P+ +
Sbjct:  465 MNAFMVWAKDERRRILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQHLERYPDYKYKPRPK 535

[Close]

BLAST of SOXP-1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008165.1 (pep scaffold:Pmarinus_7.0:GL479973:18969:29522:-1 gene:ENSPMAG00000007384.1 transcript:ENSPMAT00000008165.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 71.633 bits (174), Expect = 8.488e-15
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPK 616
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++++ K  Y EE  RL++LH   +P YKY+P+
Sbjct:   65 MNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKAMSSQEKQPYYEEQARLSKLHLERYPGYKYRPR 133

[Close]

BLAST of SOXP-1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006684.1 (pep scaffold:Pmarinus_7.0:GL477399:28105:35473:-1 gene:ENSPMAG00000006026.1 transcript:ENSPMAT00000006684.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 67.3958 bits (163), Expect = 8.760e-13
Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNS-QLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  ++ Q+S+  G  WK ++N+ K  Y EE  RL++LH  ++PDYKY+P+ +
Sbjct:   65 MNAFMVWAKDERRKILQAFPDMKHTLQISECPGSRWKSMSNQEKQPYYEEQARLSKLHLEKYPDYKYKPRPK 136

[Close]

BLAST of SOXP-1 vs. Ensembl Sea Lamprey
Match: sox1b (SRY-box transcription factor 1b [Source:NCBI gene;Acc:562710])

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-12
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKK 619
            +N FM++SR  RR +    P   NS++SK LG  WK +T   K  + +EAKRL  LH  E PDYKY+P++
Sbjct:   63 MNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTEAEKRPFIDEAKRLRALHMKEHPDYKYRPRR 132

[Close]

BLAST of SOXP-1 vs. Ensembl Sea Lamprey
Match: sox10 (SRY-box transcription factor 10 [Source:ZFIN;Acc:ZDB-GENE-011207-1])

HSP 1 Score: 66.6254 bits (161), Expect = 2.277e-12
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR +   +P   N++LSK LG LW+ +    K  + EEA+RL   H  + PDYKYQP++R
Sbjct:  116 MNAFMVWAQAARRKLSDQYPQLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRMQHKKDHPDYKYQPRRR 186

[Close]

BLAST of SOXP-1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010223.1 (pep scaffold:Pmarinus_7.0:GL478813:2555:9375:-1 gene:ENSPMAG00000009255.1 transcript:ENSPMAT00000010223.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 61.6178 bits (148), Expect = 3.113e-12
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR +    PD  N++LSK LG  W+ +T E +    EEA+RL  LH  E PDYKY+P+++
Sbjct:   10 MNAFMVWAKDERRRLAKQNPDLHNAELSKMLGKSWRALTPESRRPCVEEAERLRLLHLSEHPDYKYRPRRK 80

[Close]

BLAST of SOXP-1 vs. Ensembl Nematostella
Match: EDO36072 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJN1])

HSP 1 Score: 71.633 bits (174), Expect = 1.013e-15
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVR 628
            +N FMI+S   RR + +  P   NSQ+SK LG  W+K+T E K  +  EAK L +LH +E PDYKY+P++RV+
Sbjct:   11 MNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEKQKFFAEAKLLNELHMIEHPDYKYRPRRRVK 83

[Close]

BLAST of SOXP-1 vs. Ensembl Nematostella
Match: EDO38755 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SC09])

HSP 1 Score: 70.0922 bits (170), Expect = 3.677e-15
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++SR  R  IL   P  +N++LSK LG+ WKK++ E K  Y E+AK L ++H  + PDYKYQPK+R
Sbjct:   12 MNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKLSVEEKEPYIEKAKHLTEMHKEKHPDYKYQPKRR 82

[Close]

BLAST of SOXP-1 vs. Ensembl Nematostella
Match: EDO47688 (Predicted protein; Sox family protein 2 [Source:UniProtKB/TrEMBL;Acc:Q3S383])

HSP 1 Score: 71.633 bits (174), Expect = 3.287e-14
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVR 628
            +N +M++SR  RR I    P   NS++SK LG+ W  +T + K  Y EEAKRL +LH  + PDYKYQPK++ +
Sbjct:   12 MNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSLTLDEKQPYVEEAKRLRELHKKDHPDYKYQPKRKPK 84

[Close]

BLAST of SOXP-1 vs. Ensembl Nematostella
Match: EDO33516 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SRZ8])

HSP 1 Score: 67.3958 bits (163), Expect = 3.772e-14
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            LN F+++S+  RR I +  P   N  +S++LG+ W+K+T E K+ Y EEAK+L + H   +P YKYQP+KR
Sbjct:   10 LNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEEEKAYYFEEAKKLKEEHKERYPHYKYQPRKR 80

[Close]

BLAST of SOXP-1 vs. Ensembl Nematostella
Match: EDO39449 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S9V3])

HSP 1 Score: 63.929 bits (154), Expect = 6.444e-13
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++SR  RR +   +P+  N ++SK LG  W +++ E K  +  EAKRL  +H  ++PDY Y+P++R
Sbjct:   13 MNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEEEKRPFVTEAKRLRTIHNQKYPDYSYKPRRR 83

[Close]

BLAST of SOXP-1 vs. Ensembl Medaka
Match: sox6b (SRY-box containing gene 6b [Source:NCBI gene;Acc:100304449])

HSP 1 Score: 74.3294 bits (181), Expect = 1.274e-13
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL++LH  ++P+YKY+P+ +
Sbjct:  489 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQDKQPYYEEQARLSKLHLEKYPNYKYKPRPK 559

[Close]

BLAST of SOXP-1 vs. Ensembl Medaka
Match: sox6b (SRY-box containing gene 6b [Source:NCBI gene;Acc:100304449])

HSP 1 Score: 74.3294 bits (181), Expect = 1.310e-13
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL++LH  ++P+YKY+P+ +
Sbjct:  560 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQDKQPYYEEQARLSKLHLEKYPNYKYKPRPK 630

[Close]

BLAST of SOXP-1 vs. Ensembl Medaka
Match: sox6b (SRY-box containing gene 6b [Source:NCBI gene;Acc:100304449])

HSP 1 Score: 74.3294 bits (181), Expect = 1.351e-13
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL++LH  ++P+YKY+P+ +
Sbjct:  533 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQDKQPYYEEQARLSKLHLEKYPNYKYKPRPK 603

[Close]

BLAST of SOXP-1 vs. Ensembl Medaka
Match: sox6b (SRY-box containing gene 6b [Source:NCBI gene;Acc:100304449])

HSP 1 Score: 74.3294 bits (181), Expect = 1.523e-13
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL++LH  ++P+YKY+P+ +
Sbjct:  574 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQDKQPYYEEQARLSKLHLEKYPNYKYKPRPK 644

[Close]

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKR 622
            +N FM++++  RR IL  FPD  NS +SK LG  WK ++N+ K  Y EE  RL++LH  ++P+YKY+P+ +
Sbjct:  574 MNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQDKQPYYEEQARLSKLHLEKYPNYKYKPRPK 644

[Close]

BLAST of SOXP-1 vs. Planmine SMEST
Match: SMESG000010063.1 (SMESG000010063.1)

HSP 1 Score: 614.379 bits (1583), Expect = 0.000e+0
Identity = 318/334 (95.21%), Postives = 318/334 (95.21%), Query Frame = 2

Query:  215 MLCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSXXXXXXXXXXXXLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGRAIYDRQPCTTERSNSTSATDEENGKDNNSVQDGRRSSDIENQYIRYSVLGKNIVKRECQSFNSPLKSDNVKLETQEQDFIQAMPKPLNVRITNYNENSIFLRQQRLPSSSTMYLLPSENLIISNGIMGSQDLGEDYCRELYIINDFFPENVNIDDEIDITGNIFSNDLDLEWSEIDENYKQDLPNLNSLFQH 1216
            MLCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSRKRRRRPTTPRPLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGRAIYDRQPCTTERSNSTSATDEENGKDNNSVQDGRRSSDIENQYIRYSVLGKNIVKRECQSFNSPLKSDNVKLETQEQDFIQAMPKPLNVRITNYNENSIFLRQQRLPSSSTMYLLPSENLIISNGIMGSQDL                ENVNIDDEIDITGNIFSNDLDLEWSEIDENYKQDLPNLNSLFQH
Sbjct:    1 MLCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSRKRRRRPTTPRPLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGRAIYDRQPCTTERSNSTSATDEENGKDNNSVQDGRRSSDIENQYIRYSVLGKNIVKRECQSFNSPLKSDNVKLETQEQDFIQAMPKPLNVRITNYNENSIFLRQQRLPSSSTMYLLPSENLIISNGIMGSQDL----------------ENVNIDDEIDITGNIFSNDLDLEWSEIDENYKQDLPNLNSLFQH 318

[Close]

BLAST of SOXP-1 vs. Planmine SMEST
Match: SMESG000010063.1 (SMESG000010063.1)

HSP 1 Score: 370.933 bits (951), Expect = 2.317e-127
Identity = 191/195 (97.95%), Postives = 192/195 (98.46%), Query Frame = 2

Query:  215 MLCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSXXXXXXXXXXXXLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGRAIYDRQPCTTERSNSTSATDEENGKDNNSVQDGRRSSDIENQYIRYSVLGKNI 799
            MLCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSRKRRRRPTTPRPLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGRAIYDRQPCTTERSNSTSATDEENGKDNNSVQDGRRSSDIENQYIRYSVL   +
Sbjct:    1 MLCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSRKRRRRPTTPRPLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGRAIYDRQPCTTERSNSTSATDEENGKDNNSVQDGRRSSDIENQYIRYSVLATTL 195

[Close]

BLAST of SOXP-1 vs. Planmine SMEST
Match: SMESG000074761.1 (SMESG000074761.1)

HSP 1 Score: 135.191 bits (339), Expect = 8.471e-34
Identity = 73/129 (56.59%), Postives = 97/129 (75.19%), Query Frame = 2

Query:  218 LCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIVTDSXXXXXXXXXXXXLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYK 604
            LC  CS  Q++L+ WM HL   HPLP +W+S+ A  L DD+  +PY+ VT+SRK+R++  TPRPLN+FMIFSRH+RRN+L  F DASNS++SK LG LW  +   IKS+Y+ EAK+LA LH+ EFP+YK
Sbjct:   26 LCQKCSAYQNSLRDWMKHLVDRHPLPIQWMSDLANNLTDDKLSKPYSTVTESRKKRKKHITPRPLNSFMIFSRHLRRNVLIFFSDASNSEISKLLGKLWNNIPATIKSMYDNEAKKLAILHSKEFPEYK 154

[Close]

BLAST of SOXP-1 vs. Planmine SMEST
Match: SMESG000011244.1 (SMESG000011244.1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.111e-12
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGR 640
            +N FM++SR  RR +    P   NS++SK LG +WK ++ E K  + +EAKRL   H  ++PDYKY+P+++ +   +
Sbjct:  260 MNAFMVWSRGQRRRMAQDNPKMHNSEISKRLGGMWKNLSEEDKKPFIDEAKRLRANHMTQYPDYKYRPRRKHKAMDK 336

[Close]

BLAST of SOXP-1 vs. Planmine SMEST
Match: SMESG000011244.1 (SMESG000011244.1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.117e-12
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 2

Query:  410 LNTFMIFSRHIRRNILSVFPDASNSQLSKELGILWKKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGR 640
            +N FM++SR  RR +    P   NS++SK LG +WK ++ E K  + +EAKRL   H  ++PDYKY+P+++ +   +
Sbjct:  261 MNAFMVWSRGQRRRMAQDNPKMHNSEISKRLGGMWKNLSEEDKKPFIDEAKRLRANHMTQYPDYKYRPRRKHKAMDK 337

The following BLAST results are available for this feature:

BLAST of SOXP-1 vs. Ensembl Human
BLAST of SOXP-1 vs. Ensembl Celegans
BLAST of SOXP-1 vs. Ensembl Fly
BLAST of SOXP-1 vs. Ensembl Zebrafish
BLAST of SOXP-1 vs. Ensembl Xenopus
BLAST of SOXP-1 vs. Ensembl Mouse
BLAST of SOXP-1 vs. UniProt/SwissProt
BLAST of SOXP-1 vs. TrEMBL
BLAST of SOXP-1 vs. Ensembl Cavefish
BLAST of SOXP-1 vs. Ensembl Sea Lamprey
BLAST of SOXP-1 vs. Ensembl Yeast
BLAST of SOXP-1 vs. Ensembl Nematostella
BLAST of SOXP-1 vs. Ensembl Medaka
BLAST of SOXP-1 vs. Planmine SMEST

BLAST of SOXP-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SOX13	1.145e-13	46.48	SRY-box transcription factor 13 [Source:HGNC Symbo...	[more]
SOX13	1.145e-13	46.48	SRY-box transcription factor 13 [Source:HGNC Symbo...	[more]
SOX5	2.168e-13	46.48	SRY-box transcription factor 5 [Source:HGNC Symbol...	[more]
SOX6	3.726e-13	43.66	SRY-box transcription factor 6 [Source:HGNC Symbol...	[more]
SOX6	3.751e-13	43.66	SRY-box transcription factor 6 [Source:HGNC Symbol...	[more]

BLAST of SOXP-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
egl-13	7.519e-14	45.07	Transcription factor egl-13 [Source:UniProtKB/Swi...	[more]
egl-13	7.519e-14	45.07	Transcription factor egl-13 [Source:UniProtKB/Swi...	[more]
egl-13	7.519e-14	45.07	Transcription factor egl-13 [Source:UniProtKB/Swi...	[more]
egl-13	8.187e-14	45.07	Transcription factor egl-13 [Source:UniProtKB/Swi...	[more]
egl-13	8.355e-14	45.07	Transcription factor egl-13 [Source:UniProtKB/Swi...	[more]

BLAST of SOXP-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Sox102F	5.830e-13	43.66	gene:FBgn0039938 transcript:FBtr0089252	[more]
Sox102F	5.830e-13	43.66	gene:FBgn0039938 transcript:FBtr0334488	[more]
Sox102F	5.830e-13	43.66	gene:FBgn0039938 transcript:FBtr0334489	[more]
Sox102F	6.264e-13	43.66	gene:FBgn0039938 transcript:FBtr0100600	[more]
Sox100B	1.163e-12	33.05	gene:FBgn0024288 transcript:FBtr0085735	[more]

BLAST of SOXP-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
sox6	9.749e-14	45.07	SRY-box transcription factor 6 [Source:ZFIN;Acc:ZD...	[more]
sox6	9.749e-14	45.07	SRY-box transcription factor 6 [Source:ZFIN;Acc:ZD...	[more]
sox6	9.749e-14	45.07	SRY-box transcription factor 6 [Source:ZFIN;Acc:ZD...	[more]
sox6	9.749e-14	45.07	SRY-box transcription factor 6 [Source:ZFIN;Acc:ZD...	[more]
sox6	1.116e-13	45.07	SRY-box transcription factor 6 [Source:ZFIN;Acc:ZD...	[more]

BLAST of SOXP-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
spidr	3.403e-13	43.66	scaffold protein involved in DNA repair [Source:Xe...	[more]
spidr	3.728e-13	43.66	scaffold protein involved in DNA repair [Source:Xe...	[more]
spidr	3.740e-13	43.66	scaffold protein involved in DNA repair [Source:Xe...	[more]
spidr	3.800e-13	43.66	scaffold protein involved in DNA repair [Source:Xe...	[more]
spidr	3.842e-13	43.66	scaffold protein involved in DNA repair [Source:Xe...	[more]

BLAST of SOXP-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Sox13	8.108e-14	46.48	SRY (sex determining region Y)-box 13 [Source:MGI ...	[more]
Sox13	8.108e-14	46.48	SRY (sex determining region Y)-box 13 [Source:MGI ...	[more]
Sox13	8.844e-14	46.48	SRY (sex determining region Y)-box 13 [Source:MGI ...	[more]
Sox5	1.517e-13	46.48	SRY (sex determining region Y)-box 5 [Source:MGI S...	[more]
Sox6	2.459e-13	43.66	SRY (sex determining region Y)-box 6 [Source:MGI S...	[more]

BLAST of SOXP-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q9UN79\|SOX13_HUMAN	5.498e-13	46.48	Transcription factor SOX-13 OS=Homo sapiens OX=960...	[more]
sp\|Q04891\|SOX13_MOUSE	5.671e-13	46.48	Transcription factor SOX-13 OS=Mus musculus OX=100...	[more]
sp\|P36394\|SRY_RAT	1.255e-12	42.47	Sex-determining region Y protein (Fragment) OS=Rat...	[more]
sp\|Q23045\|EGL13_CAEEL	1.346e-12	45.07	Transcription factor egl-13 OS=Caenorhabditis eleg...	[more]
sp\|P47792\|SX19A_DANRE	1.455e-12	43.84	Transcription factor Sox-19a OS=Danio rerio OX=795...	[more]

BLAST of SOXP-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
H9CXU8	0.000e+0	95.21	SOXP-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=...	[more]
A0A3P7P8C9	5.011e-33	48.89	HMG box domain-containing protein (Fragment) OS=Di...	[more]
A0A087W088	1.269e-32	52.24	Transcription factor SOX 14 OS=Echinococcus multil...	[more]
A0A0R3WGL7	2.596e-32	52.24	HMG box domain-containing protein OS=Taenia asiati...	[more]
A0A068WSN2	2.780e-32	52.24	Transcription factor SOX 14 OS=Echinococcus granul...	[more]

BLAST of SOXP-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
sox19b	1.590e-13	37.50	transcription factor Sox-19b [Source:NCBI gene;Acc...	[more]
sox13	2.175e-13	45.07	SRY-box transcription factor 13 [Source:NCBI gene;...	[more]
sox13	2.257e-13	45.07	SRY-box transcription factor 13 [Source:NCBI gene;...	[more]
sox6	2.404e-13	43.66	SRY-box transcription factor 6 [Source:ZFIN;Acc:ZD...	[more]
sox13	2.561e-13	45.07	SRY-box transcription factor 13 [Source:NCBI gene;...	[more]

BLAST of SOXP-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSPMAT00000008165.1	8.488e-15	44.93	pep scaffold:Pmarinus_7.0:GL479973:18969:29522:-1 ...	[more]
ENSPMAT00000006684.1	8.760e-13	41.67	pep scaffold:Pmarinus_7.0:GL477399:28105:35473:-1 ...	[more]
sox1b	1.942e-12	45.71	SRY-box transcription factor 1b [Source:NCBI gene;...	[more]
sox10	2.277e-12	40.85	SRY-box transcription factor 10 [Source:ZFIN;Acc:Z...	[more]
ENSPMAT00000010223.1	3.113e-12	42.25	pep scaffold:Pmarinus_7.0:GL478813:2555:9375:-1 ge...	[more]

BLAST of SOXP-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SOXP-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO36072	1.013e-15	47.95	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38755	3.677e-15	49.30	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO47688	3.287e-14	46.58	Predicted protein; Sox family protein 2 [Source:U...	[more]
EDO33516	3.772e-14	45.07	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO39449	6.444e-13	39.44	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SOXP-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
sox6b	1.274e-13	45.07	SRY-box containing gene 6b [Source:NCBI gene;Acc:1...	[more]
sox6b	1.310e-13	45.07	SRY-box containing gene 6b [Source:NCBI gene;Acc:1...	[more]
sox6b	1.351e-13	45.07	SRY-box containing gene 6b [Source:NCBI gene;Acc:1...	[more]
sox6b	1.523e-13	45.07	SRY-box containing gene 6b [Source:NCBI gene;Acc:1...	[more]
sox6b	1.523e-13	45.07	SRY-box containing gene 6b [Source:NCBI gene;Acc:1...	[more]

BLAST of SOXP-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000010063.1	0.000e+0	95.21	SMESG000010063.1	[more]
SMESG000010063.1	2.317e-127	97.95	SMESG000010063.1	[more]
SMESG000074761.1	8.471e-34	56.59	SMESG000074761.1	[more]
SMESG000011244.1	3.111e-12	38.96	SMESG000011244.1	[more]
SMESG000011244.1	3.117e-12	38.96	SMESG000011244.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Cross References

External references for this transcript


Database	Accession
SmedGD GBrowse	SMED30019097
GenBank	AFD29619.1

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30019097 ID=SMED30019097|Name=SOXP-1|organism=Schmidtea mediterranea sexual|type=transcript|length=1596bp
GGAATAACAGCCAATTAGGGATCAGCTGCAATTTGGCCTATGATTGGACA
TTGATTTTTATAGTCTCAGGCGTTCTCAGCTTACGTGTGCACCTTTTTAG
TGGACACGTTAAATTTGATAGGTGCTTAGTGGTGTTGATTCCTGTTTGGA
AACTGTATATAACCAAGGTTATTTGTTGCTTTGAGACAAATGCAACACAA
TCAAATAATTAATTATGCTATGTTCAAATTGTTCAAACAATCAGGATACT
TTGAAATTATGGATGGTCCATTTAGCTTCTTGTCACCCATTACCTCCTGA
ATGGCTTAGTGAAAAGGCCAAAGTATTAAATGATGACGAAAATCAGCGCC
CCTATACAATTGTCACTGATTCCCGAAAAAGAAGGCGACGTCCAACCACA
CCAAGACCACTAAATACGTTCATGATTTTTTCGAGGCATATCAGACGAAA
TATTCTCTCAGTGTTTCCGGATGCATCAAATTCCCAATTAAGCAAAGAGC
TTGGAATTTTATGGAAGAAAGTCACAAATGAAATTAAATCCCTTTATGAA
GAAGAGGCAAAGCGATTGGCTCAATTACATGCTCTTGAATTTCCCGATTA
TAAATATCAACCAAAGAAACGAGTCCGAAGATTTGGAAGAGCGATTTATG
ATCGACAGCCCTGTACAACAGAAAGATCTAACTCAACTAGTGCAACAGAC
GAAGAAAATGGTAAAGACAATAATAGTGTTCAAGACGGTAGAAGATCAAG
CGATATTGAGAATCAGTATATAAGATATTCAGTTTTGGGTAAAAATATTG
TAAAACGAGAATGTCAGTCCTTTAATAGTCCTTTAAAAAGCGACAACGTT
AAATTGGAAACGCAAGAACAAGATTTTATCCAAGCGATGCCCAAACCTCT
AAACGTCCGAATAACGAATTACAACGAAAACAGTATATTTTTACGACAAC
AAAGATTACCATCAAGTAGCACAATGTATTTACTTCCTTCAGAAAACCTA
ATAATTAGTAATGGGATTATGGGATCACAGGACTTGGGTGAGGATTATTG
TAGAGAGTTGTATATAATTAATGATTTTTTCCCAGAAAATGTAAACATAG
ACGATGAAATTGATATAACAGGAAACATTTTTAGCAATGATTTAGATTTA
GAGTGGTCTGAAATTGATGAAAATTACAAACAAGATTTACCAAATCTTAA
TTCATTATTTCAACACTAATATATTTGATTTATAAAATATTTAAATATTT
TTTATTAAACAGTCTTTTACATGTACATATAGTATTGGAACTCTTCTCTG
ACTTATAAGATAACAGAGATATTGTAATAAGATTAAATTGGTTATGTGTT
TCGGTTTTTGTAAGATTGGTAATTTTCAGAAGAATTTAGACTTTTTTCAT
GGAAATTGGAATTGAGAAACAAACTGAATAAAGAAACAAATTTTTGAAAA
AAACGAAACAGATACTTATTATCAAAAGAAAATTATCTGAAGCATCGAGT
CGGTATGAAAAATAAACTAATTAGTCAGAAAATTTTTGATGAAATAACGT
CTAATGAAATTAAGATCTCCAAGGAATACTTTTTCTAACATTTGAT

protein sequence of SMED30019097-orf-1

>SMED30019097-orf-1 ID=SMED30019097-orf-1|Name=SMED30019097-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=335bp
MLCSNCSNNQDTLKLWMVHLASCHPLPPEWLSEKAKVLNDDENQRPYTIV
TDSRKRRRRPTTPRPLNTFMIFSRHIRRNILSVFPDASNSQLSKELGILW
KKVTNEIKSLYEEEAKRLAQLHALEFPDYKYQPKKRVRRFGRAIYDRQPC
TTERSNSTSATDEENGKDNNSVQDGRRSSDIENQYIRYSVLGKNIVKREC
QSFNSPLKSDNVKLETQEQDFIQAMPKPLNVRITNYNENSIFLRQQRLPS
SSTMYLLPSENLIISNGIMGSQDLGEDYCRELYIINDFFPENVNIDDEID
ITGNIFSNDLDLEWSEIDENYKQDLPNLNSLFQH*

Aliases

The feature 'SOXP-1' has the following synonyms


Synonym
SOXP-1

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000014	zeta neoblast
PLANA:0000020	protonephridia
PLANA:0000099	neuron
PLANA:0002075	pigment cell
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell
PLANA:0004517	blastomere
PLANA:0000429	neoblast
PLANA:0000009	sigma neoblast

Vocabulary: **INTERPRO**
Term	Definition
IPR036910	HMG_box_dom_sf
IPR009071	HMG_box_dom

Vocabulary: **molecular function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Schmidtea mediterranea Developmental Stages**
Term	Definition
PLANA:0000006	Stage 6
PLANA:0000007	Stage 7
PLANA:0000005	Stage 5
PLANA:0000008	Stage 8
PLANA:0000004	Stage 4

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 61..131 e-value: 1.1E-19 score: 81.4
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 63..130 e-value: 4.0E-16 score: 59.2
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 62..130 score: 16.295
IPR036910	High mobility group box domain superfamily	GENE3D	G3DSA:1.10.30.10		coord: 60..139 e-value: 1.9E-21 score: 78.3
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	SSF47095	HMG-box	coord: 52..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..166
None	No IPR available	PANTHER	PTHR45789:SF2	FI18025P1	coord: 46..167
None	No IPR available	PANTHER	PTHR45789	FAMILY NOT NAMED	coord: 46..167

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SOXP-1

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 42

Owlery

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