Neutral sphingomyelinase

Overview
NameNeutral sphingomyelinase
Smed IDSMED30019060
Length (bp)687
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Neutral sphingomyelinase (SMED30019060) t-SNE clustered cells

Violin plots show distribution of expression levels for Neutral sphingomyelinase (SMED30019060) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Neutral sphingomyelinase (SMED30019060) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Neutral sphingomyelinase (SMED30019060) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30019060

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 11

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parapharyngeal regionSMED30019060SMESG000012166.1 SmedASXL_067534SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30019060SMESG000012166.1 dd_Smed_v4_8717_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30019060SMESG000012166.1 dd_Smed_v4_8717_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30019060SMESG000012166.1 dd_Smed_v4_8717_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30019060SMESG000012166.1 dd_Smed_v4_8717_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30019060SMESG000012166.1 dd_Smed_v4_8717_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30019060SMESG000012166.1 Contig48825newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30019060SMESG000012166.1 Contig48825uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30019060SMESG000012166.1 Contig3279GPL15192PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
parapharyngeal regionSMED30019060SMESG000012166.1 dd_Smed_v6_8717_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Category 2 cellSMED30019060SMESG000012166.1 dd_Smed_v4_8717_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Neutral sphingomyelinase vs. TrEMBL
Match: A0A504YPF6 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_10893 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.265e-13
Identity = 55/148 (37.16%), Postives = 86/148 (58.11%), Query Frame = 1 
Query:  118 SNLSLGLMISTFILLVIAIATPYWNCGNLLTDCNEG-KDIAVKIFFML--GLVSIAVVLILEILGIVSITYRGNSSINLARXXXXXXXXXXXXXXXXXFTSIRGHNWSYMLTVIALTLGLQVLIIGMMTSSCTVTTRSRGHVIVRETV 552
            S + LGL IS   L+++ +AT YW+CG+L   C  G KD+ V +  +L  GLVS+ +V IL+++G+ + +   +     AR +L+ +G   LLI +LVFT   G  WSY ++ +     +QV I+ +M+S CT     R  V+V  TV
Sbjct:    8 STILLGLAIS---LVIVGLATSYWSCGSLFDSCQRGMKDVTVTVIVLLLIGLVSLCIVFILDLVGLCTESLTSSPGYITARFVLIYLGSTCLLIGILVFTGKIGRAWSYFVSTVGCVFAIQVAILAIMSSRCTA---KRERVVVTRTV 149
[Close]
BLAST of Neutral sphingomyelinase vs. TrEMBL
Match: A0A4E0RN46 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_000078 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.039e-12
Identity = 54/148 (36.49%), Postives = 85/148 (57.43%), Query Frame = 1 
Query:  118 SNLSLGLMISTFILLVIAIATPYWNCGNLLTDCNEG-KDIAVKIFFML--GLVSIAVVLILEILGIVSITYRGNSSINLARXXXXXXXXXXXXXXXXXFTSIRGHNWSYMLTVIALTLGLQVLIIGMMTSSCTVTTRSRGHVIVRETV 552
            S + LGL IS   L+++ +AT YW+CG+L   C  G KD+ V +  +L  GLV + +V IL+++G+ + +   +     AR +L+ +G   LLI +LVFT   G  WSY ++ +     +QV I+ +M+S CT     R  V+V  TV
Sbjct:    8 STILLGLAIS---LVIVGLATSYWSCGSLFDSCQRGMKDVTVTVIVLLLIGLVCLCIVFILDLVGLCTESLASSPGYITARFVLIYLGSTCLLIGILVFTGKIGRAWSYFVSTVGCVFAIQVAILAIMSSRCTA---KRERVVVTRTV 149
[Close]
BLAST of Neutral sphingomyelinase vs. TrEMBL
Match: A0A5J4NS07 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0004886 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.470e-11
Identity = 50/134 (37.31%), Postives = 78/134 (58.21%), Query Frame = 1 
Query:  130 LGLMISTFILLVIAIATPYWNCGNLLTDCNE--GKDIAVKIFFML--GLVSIAVVLILEILGIVSITYRGNSSINLARXXXXXXXXXXXXXXXXXFTSIRGHNWSYMLTVIALTLGLQVLIIGMMTSSCTVTTR 519
            LGL I    L+ + +AT YW CGNL   C     KD+ + I  +L  GL+ +++V +L+++G+ S  +  ++    AR ILL +G   LLI VLV+T   GH WSY LTV+     +Q+ I+ +++S C   T+
Sbjct:   12 LGLAIG---LVAVGLATSYWRCGNLFEGCQRYGAKDVVIAIIALLLVGLICLSIVFLLDLIGLCSDVFVVSAGYLTARFILLYLGTACLLIGVLVYTGKLGHEWSYFLTVVGCVFAMQIAILAIISSRCVTGTQ 142
[Close]
BLAST of Neutral sphingomyelinase vs. TrEMBL
Match: H2KRD2 (Uncharacterized protein OS=Clonorchis sinensis OX=79923 GN=CLF_106005 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.961e-11
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 1 
Query:  106 EMNTSNLSLGLMISTFILLVIAIATPYWNCGNLLTDCNEG--KD--IAVKIFFMLGLVSIAVVLILEILGIVSITYRGNSSINLARXXXXXXXXXXXXXXXXXFTSIRGHNWSYMLTVIALTLGLQVLIIGMMTSSCTVTTRSR 525
             +    L++ L+  +  L+V  +AT +W CG+L   C     KD  IAV I  ++G+  IA+V +L+++ + S   R  S    ARL+LL IG  +LLI +LVFT   G+ WSY    +   LG+QV I+ +++S C+ TTR R
Sbjct:    2 AIELHRLAIVLLSFSVALVVCGLATSHWGCGSLFVSCQNADYKDAVIAVIILLLIGVACIAIVFLLDLISLCSDELRSKSGYITARLVLLYIGSAALLIGILVFTGKVGYAWSYFAATVGCVLGIQVAILAVISSRCS-TTRQR 144
[Close]
BLAST of Neutral sphingomyelinase vs. TrEMBL
Match: A0A4S2LLK5 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007720 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.338e-10
Identity = 56/147 (38.10%), Postives = 83/147 (56.46%), Query Frame = 1 
Query:  118 SNLSLGLMISTFILLVIAIATPYWNCGNLLTDCN-EGKD--IAVKIFFMLGLVSIAVVLILEILGIVSITYRGNSSINLARXXXXXXXXXXXXXXXXXFTSIRGHNWSYMLTVIALTLGLQVLIIGMMTSSCTVTTRSRGHVIVRET 549
            S + LGL IS   L++I IAT +W CG+L   C    KD  IAV +  ++G V +AVV IL+++G+ S  +  ++     R +LL +G   LLI +LVFT  +   WSY L  +     +QV I+ +M+S C   T+    V+VR T
Sbjct:    8 STILLGLAIS---LVIIGIATNHWGCGSLFEGCQYRDKDATIAVLVLLLIGAVCLAVVFILDLIGLCSDVFVVSAGYLTTRFVLLYLGSAFLLIGILVFTGKKMFAWSYFLATVGTVFAMQVAILAIMSSRCVTGTQ---RVVVRTT 148
[Close]
BLAST of Neutral sphingomyelinase vs. Planmine SMEST
Match: SMESG000012166.1 (SMESG000012166.1)

HSP 1 Score: 255.373 bits (651), Expect = 2.299e-87
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:  109 MNTSNLSLGLMISTFILLVIAIATPYWNCGNLLTDCNEGKDIAVKIFFMLGLVSIAVVLILEILGIVSITYRGNSSINLARXXXXXXXXXXXXXXXXXFTSIRGHNWSYMLTVIALTLGLQVLIIGMMTSSCTVTTRSRGHVIVRETVVTH 561
            MNTSNLSLGL+ISTFILLVIAIATPYWNCGNLLTDCNEGKDIAVKIFFMLGLVSIAVVLILEILGIVSITYRGNSSINLARLILLGIGICSLLICVLVFTSIRGHNWSYMLTVIALTLGLQVLIIGMMTSSCTVTTRSRGHVIVRETVVTH
Sbjct:    1 MNTSNLSLGLIISTFILLVIAIATPYWNCGNLLTDCNEGKDIAVKIFFMLGLVSIAVVLILEILGIVSITYRGNSSINLARLILLGIGICSLLICVLVFTSIRGHNWSYMLTVIALTLGLQVLIIGMMTSSCTVTTRSRGHVIVRETVVTH 151
[Close]
BLAST of Neutral sphingomyelinase vs. Planmine SMEST
Match: SMESG000012170.1 (SMESG000012170.1)

HSP 1 Score: 142.895 bits (359), Expect = 4.566e-43
Identity = 85/133 (63.91%), Postives = 107/133 (80.45%), Query Frame = 1 
Query:  109 MNTSNLSLGLMISTFILLVIAIATPYWNCGNLLTDCNE-GKDIAVKIFFMLGLVSIAVVLILEILGIVSITYRGNSSINLARXXXXXXXXXXXXXXXXXFTSIRGHNWSYMLTVIALTLGLQVLIIGMMTSSC 504
            MNT +LSLGL+IS F+LL+IA+ATPYW+CGN+L DCN  G  +A KIFFMLGLV  AVVLILEILG   + YR + ++NL +LILLGI + SLLIC+L+F S+  + WSYML V+ +TLGLQV IIG+M+SSC
Sbjct:    1 MNTLSLSLGLIISMFVLLIIAVATPYWHCGNILLDCNHYGTWVAAKIFFMLGLVCCAVVLILEILGYACLNYRSHGTMNLVKLILLGISVGSLLICILLFNSVTSNQWSYMLAVVGMTLGLQVFIIGLMSSSC 133
[Close]
BLAST of Neutral sphingomyelinase vs. Planmine SMEST
Match: SMESG000012168.1 (SMESG000012168.1)

HSP 1 Score: 114.39 bits (285), Expect = 6.249e-32
Identity = 85/153 (55.56%), Postives = 113/153 (73.86%), Query Frame = 1 
Query:  109 MNTSNLSLGLMISTFILLVIAIATPYWNCGNLLTDCNEGKDIAV-KIFFMLGLVSIAVVLILEILGIVSITYRGNSSINLARXXXXXXXXXXXXXXXXXFTSIRGHNWSYMLTVIALTLGLQVLIIGMMTSSCTVTTRS-RGHVIVRETVVTH 561
            MNT+ LSL L+IST  LL+ A+  PYW+CGN+L+DCN    + V KIFF+LGLV   VVL+LE++   +I+Y GN+S+NL RLI+LGI + SLL+C+L++TS   + WSYM TVIA+TL +Q  +IG+M+SSC V   S   HVIVR T VTH
Sbjct:    1 MNTNRLSLVLVISTVSLLITAMILPYWHCGNILSDCNYDAGLVVAKIFFILGLVCFVVVLVLELIQFCTISYYGNASLNLVRLIMLGIAVGSLLMCILIYTSNIVNQWSYMCTVIAMTLAVQAFVIGIMSSSCFVVKSSVPDHVIVRRTFVTH 153
[Close]
BLAST of Neutral sphingomyelinase vs. Planmine SMEST
Match: SMESG000011804.1 (SMESG000011804.1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.089e-14
Identity = 47/149 (31.54%), Postives = 87/149 (58.39%), Query Frame = 1 
Query:  109 MNTSNLSLGLMISTFILLVIAIATPYWNCGNLLTDC---NEGKDIAVKIFFMLGLVSIAVVLILEILGIVSITYRGNSSINLARXXXXXXXXXXXXXXXXXFTSIRGHNWSYMLTVIALTLGLQVLIIGMMTSSCTVTTRSRGHVIVRE 546
            +++  ++L  +  + +LL+ A ATPYW CG L TDC   ++ + ++V I F LG+  + VV +L+ +   + T   N + N  RL+LL +G+  ++  V +  S R   WS+++ ++  TL +QV+++ + T +C   TRS   +IV+ 
Sbjct:    2 IDSVRITLVFLFVSIVLLICAAATPYWGCGYLYTDCIQHDKVQGLSVMILFTLGICFLIVVAVLDFVNCCNGTLLLNVTTNQVRLVLLFLGVGCIVSAVCIHASYRAPIWSFLMAIVGGTLLVQVIVLALNTCTCVTRTRSE-RIIVKH 149
The following BLAST results are available for this feature:
BLAST of Neutral sphingomyelinase vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neutral sphingomyelinase vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neutral sphingomyelinase vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neutral sphingomyelinase vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neutral sphingomyelinase vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neutral sphingomyelinase vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neutral sphingomyelinase vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neutral sphingomyelinase vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A504YPF65.265e-1337.16Uncharacterized protein OS=Fasciola gigantica OX=4... [more]
A0A4E0RN462.039e-1236.49Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A5J4NS074.470e-1137.31Uncharacterized protein OS=Paragonimus westermani ... [more]
H2KRD24.961e-1137.50Uncharacterized protein OS=Clonorchis sinensis OX=... [more]
A0A4S2LLK51.338e-1038.10Uncharacterized protein OS=Opisthorchis felineus O... [more]
back to top
BLAST of Neutral sphingomyelinase vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neutral sphingomyelinase vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neutral sphingomyelinase vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neutral sphingomyelinase vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neutral sphingomyelinase vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Neutral sphingomyelinase vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000012166.12.299e-8799.34SMESG000012166.1[more]
SMESG000012170.14.566e-4363.91SMESG000012170.1[more]
SMESG000012168.16.249e-3255.56SMESG000012168.1[more]
SMESG000011804.11.089e-1431.54SMESG000011804.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30019060 ID=SMED30019060|Name=Neutral sphingomyelinase|organism=Schmidtea mediterranea sexual|type=transcript|length=687bp
TGTCACGTGATGCATTGTGTTTGCTCGCACACAGCCATAATTCCAATACA
AACTCAAATCGAATTGAGAATTATAAAAGAAAATTTTTTATTTTGAACTC
ATTTCGAAATGAATACCAGCAATTTGAGTCTTGGATTAATGATATCCACA
TTTATTCTACTAGTCATTGCAATAGCGACTCCATATTGGAATTGCGGCAA
TCTCCTCACTGATTGCAATGAGGGAAAGGATATTGCTGTCAAGATATTCT
TTATGCTTGGTCTCGTCTCAATAGCCGTCGTATTGATTCTGGAAATTCTT
GGTATCGTGTCGATAACATATCGTGGAAATTCTTCAATAAATTTAGCTCG
ACTGATTCTGTTGGGAATCGGAATATGTAGTTTGTTGATTTGTGTTTTAG
TGTTCACGTCTATCCGGGGCCATAATTGGTCTTATATGCTTACGGTGATT
GCGCTGACTCTCGGATTGCAAGTTCTTATAATTGGAATGATGACAAGCAG
CTGTACGGTTACTACAAGATCCAGAGGACATGTGATTGTCAGAGAAACGG
TCGTAACCCATTGATGATGGTTTCAAATTGATATAGCAATCTTATATTAT
GGTTATTAATTTATATTATTAGTAATATCGAATGTTGATCTGTATACTGG
ACATTCTATTTTGTTAATAATAAATTTATATCATTAT
back to top

protein sequence of SMED30019060-orf-1

>SMED30019060-orf-1 ID=SMED30019060-orf-1|Name=SMED30019060-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=152bp
MNTSNLSLGLMISTFILLVIAIATPYWNCGNLLTDCNEGKDIAVKIFFML
GLVSIAVVLILEILGIVSITYRGNSSINLARLILLGIGICSLLICVLVFT
SIRGHNWSYMLTVIALTLGLQVLIIGMMTSSCTVTTRSRGHVIVRETVVT
H*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000028Category 2 cell
PLANA:0000099neuron
PLANA:0000420parapharyngeal region
PLANA:0002032epidermal cell
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..21
score: 0.529
NoneNo IPR availableTMHMMTMhelixcoord: 82..104
NoneNo IPR availableTMHMMTMhelixcoord: 47..69
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
NoneNo IPR availableTMHMMTMhelixcoord: 109..131