WD repeat domain 89

Overview
NameWD repeat domain 89
Smed IDSMED30019008
Length (bp)2286
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of WD repeat domain 89 (SMED30019008) t-SNE clustered cells

Violin plots show distribution of expression levels for WD repeat domain 89 (SMED30019008) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of WD repeat domain 89 (SMED30019008) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for WD repeat domain 89 (SMED30019008) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30019008

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30019008SMESG000066447.1 SMESG000066446.1 SmedASXL_017707SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30019008SMESG000066447.1 SMESG000066446.1 SmedASXL_017706SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Human
Match: WDR89 (WD repeat domain 89 [Source:HGNC Symbol;Acc:HGNC:20489])

HSP 1 Score: 65.0846 bits (157), Expect = 4.140e-11
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIR----NPST---PIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTV 2161
            ++IC+G        EK + DALLVFWD R    N ST    +G Y ++HSD++  + F     N+++SG  DGL+NV+DI   +EEDAL+T 
Sbjct:  128 HIICAGT-------EKVDDDALLVFWDARMNSQNLSTTKDSLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINIDNEEDALVTT 212
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Human
Match: WDR89 (WD repeat domain 89 [Source:HGNC Symbol;Acc:HGNC:20489])

HSP 1 Score: 65.0846 bits (157), Expect = 1.799e-10
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIR----NPST---PIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTV 2161
            ++IC+G        EK + DALLVFWD R    N ST    +G Y ++HSD++  + F     N+++SG  DGL+NV+DI   +EEDAL+T 
Sbjct:  128 HIICAGT-------EKVDDDALLVFWDARMNSQNLSTTKDSLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINIDNEEDALVTT 212
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Human
Match: WDR89 (WD repeat domain 89 [Source:HGNC Symbol;Acc:HGNC:20489])

HSP 1 Score: 65.0846 bits (157), Expect = 1.799e-10
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIR----NPST---PIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTV 2161
            ++IC+G        EK + DALLVFWD R    N ST    +G Y ++HSD++  + F     N+++SG  DGL+NV+DI   +EEDAL+T 
Sbjct:  128 HIICAGT-------EKVDDDALLVFWDARMNSQNLSTTKDSLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINIDNEEDALVTT 212
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Human
Match: WDR89 (WD repeat domain 89 [Source:HGNC Symbol;Acc:HGNC:20489])

HSP 1 Score: 65.0846 bits (157), Expect = 1.799e-10
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIR----NPST---PIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTV 2161
            ++IC+G        EK + DALLVFWD R    N ST    +G Y ++HSD++  + F     N+++SG  DGL+NV+DI   +EEDAL+T 
Sbjct:  128 HIICAGT-------EKVDDDALLVFWDARMNSQNLSTTKDSLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINIDNEEDALVTT 212
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Fly
Match: CG12134 (gene:FBgn0033471 transcript:FBtr0088389)

HSP 1 Score: 60.4622 bits (145), Expect = 1.984e-9
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 2 
Query: 1910 DGNLICSGAAVKESLFEKGESDALLVFWDIRNPSTPIGYYKDSHSDNIVSLSFM---DNLLLSGGEDGLINVYDIRQASEEDALL 2155
            +G +IC G        E+  S+A LVF+D+R     +G Y +SH D+I SL F     +LL +G  DGL+NV+D+++  E++ALL
Sbjct:   98 NGRIICCGT-------EQFHSNAFLVFFDVRE-RQQMGVYFESHEDDITSLRFHAQNPDLLATGSVDGLVNVFDVKEPDEDEALL 174
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Fly
Match: CG12134 (gene:FBgn0033471 transcript:FBtr0088388)

HSP 1 Score: 60.8474 bits (146), Expect = 2.463e-9
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 2 
Query: 1910 DGNLICSGAAVKESLFEKGESDALLVFWDIRNPSTPIGYYKDSHSDNIVSLSFM---DNLLLSGGEDGLINVYDIRQASEEDALL 2155
            +G +IC G        E+  S+A LVF+D+R     +G Y +SH D+I SL F     +LL +G  DGL+NV+D+++  E++ALL
Sbjct:  168 NGRIICCGT-------EQFHSNAFLVFFDVRE-RQQMGVYFESHEDDITSLRFHAQNPDLLATGSVDGLVNVFDVKEPDEDEALL 244
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Zebrafish
Match: wdr89 (WD repeat domain 89 [Source:ZFIN;Acc:ZDB-GENE-090319-3])

HSP 1 Score: 65.4698 bits (158), Expect = 7.842e-11
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIR--NPSTPIGYYKDSHSDNIVSLSF---MDNLLLSGGEDGLINVYDIRQASEEDALLTV 2161
             ++C+G        E+ E D+ LVFWD R      P+G Y +SHSD++ ++ F     + L SGG DGL+NV+D+    E+DAL+T 
Sbjct:  122 RVLCAGT-------EQVEEDSFLVFWDARMVQDRGPLGVYSESHSDDVTAVKFHPQQADRLASGGTDGLVNVFDLSLGGEDDALVTT 201
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Xenopus
Match: pak1ip1 (PAK1 interacting protein 1 [Source:Xenbase;Acc:XB-GENE-492186])

HSP 1 Score: 58.151 bits (139), Expect = 2.561e-8
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 2 
Query: 1919 LICSGAAVKESLFEKGESDALLVFWDIR----NPST---PIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDAL 2152
            ++C+G        EK E DA LVFWD R    N S    P+G Y +SH D+I  + F     +++ SG  DGL+NV++I + +E+DAL
Sbjct:  130 VVCAGT-------EKVEEDAFLVFWDARYNSENKSARQDPLGVYAESHFDDITKVCFHPTNPSMVASGSTDGLVNVFNISKDNEDDAL 210
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Mouse
Match: Wdr89 (WD repeat domain 89 [Source:MGI Symbol;Acc:MGI:1919588])

HSP 1 Score: 69.707 bits (169), Expect = 4.697e-12
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIRNPST------PIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTV 2161
            ++IC+GA       EK + DALLVFWD R  S       P+G Y ++HSD+I  + F     NL++SG  DGL+NV+D+    EEDAL+  
Sbjct:  128 HVICAGA-------EKVDEDALLVFWDARFTSQDLSTRDPLGAYSETHSDDITQVRFHPSNPNLVVSGSTDGLVNVFDLSADKEEDALVAT 211
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Mouse
Match: Wdr89 (WD repeat domain 89 [Source:MGI Symbol;Acc:MGI:1919588])

HSP 1 Score: 69.707 bits (169), Expect = 4.697e-12
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIRNPST------PIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTV 2161
            ++IC+GA       EK + DALLVFWD R  S       P+G Y ++HSD+I  + F     NL++SG  DGL+NV+D+    EEDAL+  
Sbjct:  128 HVICAGA-------EKVDEDALLVFWDARFTSQDLSTRDPLGAYSETHSDDITQVRFHPSNPNLVVSGSTDGLVNVFDLSADKEEDALVAT 211
[Close]
BLAST of WD repeat domain 89 vs. UniProt/SwissProt
Match: sp|Q5FVP5|WDR89_RAT (WD repeat-containing protein 89 OS=Rattus norvegicus OX=10116 GN=Wdr89 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.087e-11
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIRNPST------PIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTV 2161
            ++IC+GA       EK E DALLVFWD R  S       P+G Y ++HSD+I  + F     N+++SG  DGL+NV+D+   +EEDAL+  
Sbjct:  128 HIICAGA-------EKVEDDALLVFWDARFTSQDLSTRDPLGAYSETHSDDITQVRFHPSNPNMVVSGSTDGLVNVFDLSVDNEEDALVAT 211
[Close]
BLAST of WD repeat domain 89 vs. UniProt/SwissProt
Match: sp|Q9D0R9|WDR89_MOUSE (WD repeat-containing protein 89 OS=Mus musculus OX=10090 GN=Wdr89 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.286e-11
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIRNPST------PIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTV 2161
            ++IC+GA       EK + DALLVFWD R  S       P+G Y ++HSD+I  + F     NL++SG  DGL+NV+D+    EEDAL+  
Sbjct:  128 HVICAGA-------EKVDEDALLVFWDARFTSQDLSTRDPLGAYSETHSDDITQVRFHPSNPNLVVSGSTDGLVNVFDLSADKEEDALVAT 211
[Close]
BLAST of WD repeat domain 89 vs. UniProt/SwissProt
Match: sp|Q5RBZ3|WDR89_PONAB (WD repeat-containing protein 89 OS=Pongo abelii OX=9601 GN=WDR89 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.273e-11
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIRNPST-------PIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTV 2161
            ++IC+G        EK + DALLVFWD R  S        P+G Y ++HSD++  + F     N+++SG  DGL+NV+DI   +EEDAL+T 
Sbjct:  128 HIICAGT-------EKVDDDALLVFWDARMNSQDLSTTKDPLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINIDNEEDALVTT 212
[Close]
BLAST of WD repeat domain 89 vs. UniProt/SwissProt
Match: sp|Q3ZBK1|WDR89_BOVIN (WD repeat-containing protein 89 OS=Bos taurus OX=9913 GN=WDR89 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.134e-10
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIR-------NPSTPIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTV 2161
            ++IC+G        EK + DALLVFWD R           P+G Y ++HSD+I  + F     N+++SG  DGL+NV+DI   +E+DAL+T 
Sbjct:  127 HVICAGT-------EKVDDDALLVFWDARINSQDLSTTKEPLGAYSETHSDDITQVRFHPSNPNMVVSGSTDGLVNVFDISADNEDDALVTT 211
[Close]
BLAST of WD repeat domain 89 vs. UniProt/SwissProt
Match: sp|Q96FK6|WDR89_HUMAN (WD repeat-containing protein 89 OS=Homo sapiens OX=9606 GN=WDR89 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 8.639e-10
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIR----NPST---PIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTV 2161
            ++IC+G        EK + DALLVFWD R    N ST    +G Y ++HSD++  + F     N+++SG  DGL+NV+DI   +EEDAL+T 
Sbjct:  128 HIICAGT-------EKVDDDALLVFWDARMNSQNLSTTKDSLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINIDNEEDALVTT 212
[Close]
BLAST of WD repeat domain 89 vs. TrEMBL
Match: A0A1V9XAE6 (WD repeat-containing protein 89-like OS=Tropilaelaps mercedesae OX=418985 GN=BIW11_01666 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.448e-11
Identity = 55/185 (29.73%), Postives = 95/185 (51.35%), Query Frame = 2 
Query: 1628 NCGTNFSKYCKSRGNNFFLVDNDNVYLFDLSVHNFKKQCFNINNISDICYNQEKDILLCSSYKNI-ICKTRDNETIVYE-----TPQALGLNLLSVTSYKDGNLICSGAAVKESLFEKGESDALLVFWDIRNPSTPIGYYKDSHSDNIVSLSF---MDNLLLSGGEDGLINVYDIRQASEEDALL 2155
            +C  +  + C    +   ++D+ ++    +   NFK +   +  I+D+ +  E  ++ CSS   + +   R+   I  E      P      LLS     +GN+ C+G+       E  + DA ++FWDIR+  T +G Y DSHS +I  + F   +++ LL+GG DGL+NV+DI +  E++ALL
Sbjct:   28 DCSDSTPQVCVVTPSGLHVLDSHSL----VPKENFKSES-KLGRITDVKFIDESTVMFCSSDGYLRLWDQREAGKISLEMASTAEPDTELKPLLSCDLNLEGNVACAGS-------EAQKEDAFVLFWDIRDTRTLLGGYWDSHSKDISQVKFHPSINSFLLTGGMDGLVNVFDIEEDCEDNALL 200
[Close]
BLAST of WD repeat domain 89 vs. TrEMBL
Match: A1CNZ9 (WD domain protein OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) OX=344612 GN=ACLA_020770 PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.143e-10
Identity = 51/180 (28.33%), Postives = 89/180 (49.44%), Query Frame = 2 
Query: 1661 SRGNNFFLVDNDNVYLFDLS----VHNFKKQCFNINNISDI-CYNQEKDILLCSSYKNIICKTRDNETIVYETPQALGLNLLSVTSYKDGNLI----CSGAAVKESLFEKGESDALLVFWDIRNPSTPIGYYKDSHSDNIVSLSF---MDNLLLSGGEDGLINVYDIRQASEEDALLTVI 2164
            S G+   +  +D++ +FD +    V     Q      ++ +  Y   KD  L      ++   RD +  V++  +  G  ++ + + ++  ++    CSG     +  E   S A++ FWDIR+P T    Y +SH+D++  L +    DN+LLSG  DGL+N+YD     E+DAL+ VI
Sbjct:   27 SSGSLAAISSDDSLRVFDAASLDRVTVLAAQTHGAGGVTALRTYGAGKDQQL------LVTGGRDGKVKVWDARKGRGAAVVEMETVRNAPVLSVACCSGTNTVVAGTELVSSQAVVAFWDIRSPGTHRLQYIESHNDDVTDLQYHPTRDNILLSGSTDGLVNIYDTTITDEDDALVQVI 200
[Close]
BLAST of WD repeat domain 89 vs. TrEMBL
Match: A0A1L9VUQ6 (WD_REPEATS_REGION domain-containing protein OS=Aspergillus glaucus CBS 516.65 OX=1160497 GN=ASPGLDRAFT_22491 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.608e-10
Identity = 56/190 (29.47%), Postives = 86/190 (45.26%), Query Frame = 2 
Query: 1655 CKSRGNNFFLVDNDN-VYLFDLSVHNFKKQCFNINNISDICYNQEKD-ILLCSSYKN------IICKTRDNETIVYETPQALG---------LNLLSVTSYKDGNLICSGAAVKESLFEKGESDALLVFWDIRNPSTPIGYYKDSHSDNIVSLSF---MDNLLLSGGEDGLINVYDIRQASEEDALLTVI 2164
              S G++F  + +D+ + +FD +         NI  +S +      D +     Y        ++   RD +  V++     G           +LSV    D N + +G        E     A++ FWDIR+P  P   Y +SH+D++  L F    +NL LSGG DGL+NVYD   A E+DAL+ VI
Sbjct:   25 AASPGSSFAAISSDDSLRVFDAA---------NIQRVSVVAPTTHADGVTALEPYDQRQGQQLLVTGGRDGKVKVWDLRSGKGSAVVEMETDKPVLSVACNADINTVVAGT-------ELASHQAVVAFWDIRSPDVPRLQYVESHNDDVTELQFHPTRNNLFLSGGTDGLVNVYDTTIADEDDALVQVI 198
[Close]
BLAST of WD repeat domain 89 vs. TrEMBL
Match: A0A212EK02 (Putative WD-repeat protein YNL035C OS=Danaus plexippus plexippus OX=278856 GN=KGM_209888 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.379e-10
Identity = 50/165 (30.30%), Postives = 92/165 (55.76%), Query Frame = 2 
Query: 1691 NDNVYLFDLSVHNFKKQCF---NINNISDICYNQEKDILLCSSYKNII--CKTRDNETIVYE---TPQALGLNLLSVTSYKDGNLICSGAAVKESLFEKGESDALLVFWDIRNPSTPIGYYKDSHSDNIVSLSFM---DNLLLSGGEDGLINVYDIRQASEEDAL 2152
            ++++ ++ L+  +  K C    + ++++++ +N +++ LL S+  + I    TR N     E    P A+      +     G L+ +G+A++E        DA LVFWD+RNP  P+G Y +SH+D+I  + F      +L SG  DGL+N+Y++ +A+E+DAL
Sbjct:   60 DNSIEVYQLTNSSLSKVCRLSGHRDSLTELVFNPKEEHLLYSAGHDGIKLWDTRSNGLCAQEYKDEPDAVPRQYECMDVSCSGRLLAAGSALQED-------DAYLVFWDVRNPQ-PLGGYWNSHTDDITQVKFHKEKSEILSSGSLDGLLNIYNVLEATEDDAL 216
[Close]
BLAST of WD repeat domain 89 vs. TrEMBL
Match: M2LWV8 (WD_REPEATS_REGION domain-containing protein OS=Baudoinia panamericana (strain UAMH 10762) OX=717646 GN=BAUCODRAFT_31478 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 9.064e-10
Identity = 53/195 (27.18%), Postives = 94/195 (48.21%), Query Frame = 2 
Query: 1604 KSIVKSFKNCGTNFSKYCKSRGNNFF--LVDNDNVYLFDLSVHNFKKQCFNINNISDICYNQ-EKDILLCSSYKNII--CKTRDNETIVYETPQALGLNLLSVTSYKDGNLICSGAAVKESLFEKGESDALLVFWDIRNPSTPIGYYKDSHSDNIVSLSF---MDNLLLSGGEDGLINVYDIRQASEEDALLTVI 2164
            K +  S  + G +   Y  +   ++F  +  +D++ +FD S+           N    C    + + +L +    I+  C +R  +      PQ   ++ L+   +    L+ +G    ES  E G  D  ++ +D+RNP+ P+  Y +SH+D+I  L+F     N LLSG  DGL++++D+  A EEDAL  V+
Sbjct:    3 KQVAASNLSTGPDTYMYALAHVGDYFATIASDDSLRIFDASLRQLA--VTQPRNAGLACLETYDNNTVLTAGRDGIVRRCDSRAKQVSQVSEPQGRSISALACREH----LVAAG---TESTKE-GLGDVSVLLYDLRNPAVPMRNYAESHTDSITQLAFHPVHPNGLLSGSTDGLVSLFDLGMAEEEDALQQVL 187
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Cavefish
Match: wdr89 (WD repeat domain 89 [Source:NCBI gene;Acc:103043113])

HSP 1 Score: 55.4546 bits (132), Expect = 1.173e-7
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 2 
Query: 1913 GNLICSGAAVKESLFEKGESDALLVFWDIRNPSTP-----IGYYKDSHSDNIVSLSF---MDNLLLSGGEDGLINVYDIRQASEEDALLTV 2161
            G ++C+G        E+   D+ LVFWD R  +       +G Y ++HSD+I ++ F     + L SG  DGL+NV+D+    E+DAL+T 
Sbjct:  125 GRVLCAGT-------EQVGEDSFLVFWDSRMEAEDKGGRLLGVYSETHSDDITAVRFHPSQADRLASGATDGLVNVFDLSLGEEDDALITT 208
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Yeast
Match: YNL035C_mRNA (Nuclear protein of unknown function; relocalizes to the cytosol in response to hypoxia; contains WD-40 domains; not an essential gene; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004980])

HSP 1 Score: 56.9954 bits (136), Expect = 5.299e-9
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 2 
Query: 1973 DALLVFWDIRNPSTPIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTVI 2164
            DA +  +DIR   TP+    DSH D++  + F     N+LLSG  DG  N+YD++Q  EEDAL  VI
Sbjct:  125 DAAVYIYDIRKWDTPLRSLIDSHHDDVTCIKFHPSDVNILLSGSTDGYTNIYDLKQDEEEDALHQVI 191
[Close]
BLAST of WD repeat domain 89 vs. Ensembl Medaka
Match: wdr89 (WD repeat domain 89 [Source:NCBI gene;Acc:101173351])

HSP 1 Score: 61.6178 bits (148), Expect = 1.170e-9
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 2 
Query: 1916 NLICSGAAVKESLFEKGESDALLVFWDIRNPSTPIGYYKDSHSDNIVSLSFMD---NLLLSGGEDGLINVYDIRQASEEDALLTV 2161
             L+C+G        +  + D+ LVFWD R     +G Y +SHSD+I  + F     + L SG  DGL+NV+D+ Q +E++ALL  
Sbjct:  122 TLLCAGTE------QISDGDSFLVFWDSRKAGALLGVYSESHSDDITQVCFHPQDKDRLASGSTDGLVNVFDLSQGTEDEALLAT 200
[Close]
BLAST of WD repeat domain 89 vs. Planmine SMEST
Match: SMESG000066447.1 (SMESG000066447.1)

HSP 1 Score: 538.495 bits (1386), Expect = 0.000e+0
Identity = 275/305 (90.16%), Postives = 277/305 (90.82%), Query Frame = 3 
Query:  636 DINEMKGSCLIFDKPLSKRPNLSKEKSKYLKHLILENHKKTDLLHGKRFTRITKSNLGVKVSSANDALTNFIKNINHENFDKNIQCDNSTNITHKTIFENKINIENDGNQNWEDLTIDGYEIL**L*YNIYKFSITLDQSSKYSYAIWNLMGLNVLFRLKSFYRILNKPEESQNVPECAYIRVHLGDREVKNNSEEIWKSFFGSKINFDSDIMQIILNMKTKCIQNVKIESMQEFKSKNPIIESKYQAILKFLKNCFGSLILSNRYESDFYMLNLTNNEIKIYRSTEEENRHELDLKTFVNLDTI 1550
            +INEMKGSCLIFDKPLSKRPNLSKEKSKYLKHLILENHKKTDLLHGKRFTRITKSNLGVKVSSANDALTNFIKNINH+        DNSTNITHKTIFENKINIENDGNQNWEDLTI                    DQSSKYSYAIWNLMGLNVLFRLKSFYRILNKPEESQNVPECAYIRVHLGDREVKNNSEEIWKSFFGSKINFDSDIMQIILNMKTKCIQNVKIESMQEFKSKNPIIESKYQAILKFLKNCFGSLILSNRYESDFYMLNLTNNEIKIYRSTEEENRHELDLKTFVNLDTI
Sbjct:  189 NINEMKGSCLIFDKPLSKRPNLSKEKSKYLKHLILENHKKTDLLHGKRFTRITKSNLGVKVSSANDALTNFIKNINHD--------DNSTNITHKTIFENKINIENDGNQNWEDLTIG-------------------DQSSKYSYAIWNLMGLNVLFRLKSFYRILNKPEESQNVPECAYIRVHLGDREVKNNSEEIWKSFFGSKINFDSDIMQIILNMKTKCIQNVKIESMQEFKSKNPIIESKYQAILKFLKNCFGSLILSNRYESDFYMLNLTNNEIKIYRSTEEENRHELDLKTFVNLDTI 466

HSP 2 Score: 369.777 bits (948), Expect = 0.000e+0
Identity = 186/189 (98.41%), Postives = 187/189 (98.94%), Query Frame = 1 
Query:   13 MFNNIGNPFIFANHVEFSAFYQKDYKDYITLLNEMELTLKNEIESNTANSTSEKEISRIEDEFIILSILQKMKDKLIVVPSLYNFECELDLDDIDSETVDIDIGMDLIEALLNKNVWGFPEQPLNESFLSISNATSKVSIGLLEDRYIKEIVLNRQIDVVLNLDSFVKFILFHLKDLQEDCYIPFLKFS 579
            MFNNI NPFIFANHVEFSAFYQKDYKDYITLLNEMELTLKNEIESNTANSTSEKEISRIEDEFIILSILQKMKDKLIVVPSLYNFECELDLDDIDSETVDIDIGMDLIEALLNKNVWGFPEQPLNESF SISNATSKVSIGLLEDRYIKEIVLNRQIDVVLNLDSFVKFILFHLKDLQEDCYIPFLKF+
Sbjct:    1 MFNNIVNPFIFANHVEFSAFYQKDYKDYITLLNEMELTLKNEIESNTANSTSEKEISRIEDEFIILSILQKMKDKLIVVPSLYNFECELDLDDIDSETVDIDIGMDLIEALLNKNVWGFPEQPLNESFPSISNATSKVSIGLLEDRYIKEIVLNRQIDVVLNLDSFVKFILFHLKDLQEDCYIPFLKFN 189
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BLAST of WD repeat domain 89 vs. Planmine SMEST
Match: SMESG000066447.1 (SMESG000066447.1)

HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0
Identity = 275/305 (90.16%), Postives = 277/305 (90.82%), Query Frame = 3 
Query:  636 DINEMKGSCLIFDKPLSKRPNLSKEKSKYLKHLILENHKKTDLLHGKRFTRITKSNLGVKVSSANDALTNFIKNINHENFDKNIQCDNSTNITHKTIFENKINIENDGNQNWEDLTIDGYEIL**L*YNIYKFSITLDQSSKYSYAIWNLMGLNVLFRLKSFYRILNKPEESQNVPECAYIRVHLGDREVKNNSEEIWKSFFGSKINFDSDIMQIILNMKTKCIQNVKIESMQEFKSKNPIIESKYQAILKFLKNCFGSLILSNRYESDFYMLNLTNNEIKIYRSTEEENRHELDLKTFVNLDTI 1550
            +INEMKGSCLIFDKPLSKRPNLSKEKSKYLKHLILENHKKTDLLHGKRFTRITKSNLGVKVSSANDALTNFIKNINH+        DNSTNITHKTIFENKINIENDGNQNWEDLTI                    DQSSKYSYAIWNLMGLNVLFRLKSFYRILNKPEESQNVPECAYIRVHLGDREVKNNSEEIWKSFFGSKINFDSDIMQIILNMKTKCIQNVKIESMQEFKSKNPIIESKYQAILKFLKNCFGSLILSNRYESDFYMLNLTNNEIKIYRSTEEENRHELDLKTFVNLDTI
Sbjct:  155 NINEMKGSCLIFDKPLSKRPNLSKEKSKYLKHLILENHKKTDLLHGKRFTRITKSNLGVKVSSANDALTNFIKNINHD--------DNSTNITHKTIFENKINIENDGNQNWEDLTIG-------------------DQSSKYSYAIWNLMGLNVLFRLKSFYRILNKPEESQNVPECAYIRVHLGDREVKNNSEEIWKSFFGSKINFDSDIMQIILNMKTKCIQNVKIESMQEFKSKNPIIESKYQAILKFLKNCFGSLILSNRYESDFYMLNLTNNEIKIYRSTEEENRHELDLKTFVNLDTI 432

HSP 2 Score: 301.982 bits (772), Expect = 0.000e+0
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 1 
Query:  115 MELTLKNEIESNTANSTSEKEISRIEDEFIILSILQKMKDKLIVVPSLYNFECELDLDDIDSETVDIDIGMDLIEALLNKNVWGFPEQPLNESFLSISNATSKVSIGLLEDRYIKEIVLNRQIDVVLNLDSFVKFILFHLKDLQEDCYIPFLKFS 579
            MELTLKNEIESNTANSTSEKEISRIEDEFIILSILQKMKDKLIVVPSLYNFECELDLDDIDSETVDIDIGMDLIEALLNKNVWGFPEQPLNESF SISNATSKVSIGLLEDRYIKEIVLNRQIDVVLNLDSFVKFILFHLKDLQEDCYIPFLKF+
Sbjct:    1 MELTLKNEIESNTANSTSEKEISRIEDEFIILSILQKMKDKLIVVPSLYNFECELDLDDIDSETVDIDIGMDLIEALLNKNVWGFPEQPLNESFPSISNATSKVSIGLLEDRYIKEIVLNRQIDVVLNLDSFVKFILFHLKDLQEDCYIPFLKFN 155
[Close]
BLAST of WD repeat domain 89 vs. Planmine SMEST
Match: SMESG000066447.1 (SMESG000066447.1)

HSP 1 Score: 536.954 bits (1382), Expect = 0.000e+0
Identity = 275/305 (90.16%), Postives = 277/305 (90.82%), Query Frame = 3 
Query:  636 DINEMKGSCLIFDKPLSKRPNLSKEKSKYLKHLILENHKKTDLLHGKRFTRITKSNLGVKVSSANDALTNFIKNINHENFDKNIQCDNSTNITHKTIFENKINIENDGNQNWEDLTIDGYEIL**L*YNIYKFSITLDQSSKYSYAIWNLMGLNVLFRLKSFYRILNKPEESQNVPECAYIRVHLGDREVKNNSEEIWKSFFGSKINFDSDIMQIILNMKTKCIQNVKIESMQEFKSKNPIIESKYQAILKFLKNCFGSLILSNRYESDFYMLNLTNNEIKIYRSTEEENRHELDLKTFVNLDTI 1550
            +INEMKGSCLIFDKPLSKRPNLSKEKSKYLKHLILENHKKTDLLHGKRFTRITKSNLGVKVSSANDALTNFIKNINH+        DNSTNITHKTIFENKINIENDGNQNWEDLTI                    DQSSKYSYAIWNLMGLNVLFRLKSFYRILNKPEESQNVPECAYIRVHLGDREVKNNSEEIWKSFFGSKINFDSDIMQIILNMKTKCIQNVKIESMQEFKSKNPIIESKYQAILKFLKNCFGSLILSNRYESDFYMLNLTNNEIKIYRSTEEENRHELDLKTFVNLDTI
Sbjct:   85 NINEMKGSCLIFDKPLSKRPNLSKEKSKYLKHLILENHKKTDLLHGKRFTRITKSNLGVKVSSANDALTNFIKNINHD--------DNSTNITHKTIFENKINIENDGNQNWEDLTIG-------------------DQSSKYSYAIWNLMGLNVLFRLKSFYRILNKPEESQNVPECAYIRVHLGDREVKNNSEEIWKSFFGSKINFDSDIMQIILNMKTKCIQNVKIESMQEFKSKNPIIESKYQAILKFLKNCFGSLILSNRYESDFYMLNLTNNEIKIYRSTEEENRHELDLKTFVNLDTI 362

HSP 2 Score: 170.629 bits (431), Expect = 0.000e+0
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:  325 MDLIEALLNKNVWGFPEQPLNESFLSISNATSKVSIGLLEDRYIKEIVLNRQIDVVLNLDSFVKFILFHLKDLQEDCYIPFLKFS 579
            MDLIEALLNKNVWGFPEQPLNESF SISNATSKVSIGLLEDRYIKEIVLNRQIDVVLNLDSFVKFILFHLKDLQEDCYIPFLKF+
Sbjct:    1 MDLIEALLNKNVWGFPEQPLNESFPSISNATSKVSIGLLEDRYIKEIVLNRQIDVVLNLDSFVKFILFHLKDLQEDCYIPFLKFN 85
[Close]
BLAST of WD repeat domain 89 vs. Planmine SMEST
Match: SMESG000066446.1 (SMESG000066446.1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.705e-11
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 2 
Query: 2069 MDNLLLSGGEDGLINVYDIRQASEEDALLTVI 2164
            MDNLLLSGGEDGLINVYDIRQ+SEEDALLT I
Sbjct:    1 MDNLLLSGGEDGLINVYDIRQSSEEDALLTSI 32
The following BLAST results are available for this feature:
BLAST of WD repeat domain 89 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
WDR894.140e-1142.39WD repeat domain 89 [Source:HGNC Symbol;Acc:HGNC:2... [more]
WDR891.799e-1042.39WD repeat domain 89 [Source:HGNC Symbol;Acc:HGNC:2... [more]
WDR891.799e-1042.39WD repeat domain 89 [Source:HGNC Symbol;Acc:HGNC:2... [more]
WDR891.799e-1042.39WD repeat domain 89 [Source:HGNC Symbol;Acc:HGNC:2... [more]
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BLAST of WD repeat domain 89 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of WD repeat domain 89 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
CG121341.984e-940.00gene:FBgn0033471 transcript:FBtr0088389[more]
CG121342.463e-940.00gene:FBgn0033471 transcript:FBtr0088388[more]
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BLAST of WD repeat domain 89 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
wdr897.842e-1139.08WD repeat domain 89 [Source:ZFIN;Acc:ZDB-GENE-0903... [more]
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BLAST of WD repeat domain 89 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
pak1ip12.561e-839.77PAK1 interacting protein 1 [Source:Xenbase;Acc:XB-... [more]
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BLAST of WD repeat domain 89 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Wdr894.697e-1242.86WD repeat domain 89 [Source:MGI Symbol;Acc:MGI:191... [more]
Wdr894.697e-1242.86WD repeat domain 89 [Source:MGI Symbol;Acc:MGI:191... [more]
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BLAST of WD repeat domain 89 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q5FVP5|WDR89_RAT3.087e-1142.86WD repeat-containing protein 89 OS=Rattus norvegic... [more]
sp|Q9D0R9|WDR89_MOUSE3.286e-1142.86WD repeat-containing protein 89 OS=Mus musculus OX... [more]
sp|Q5RBZ3|WDR89_PONAB8.273e-1141.30WD repeat-containing protein 89 OS=Pongo abelii OX... [more]
sp|Q3ZBK1|WDR89_BOVIN1.134e-1040.22WD repeat-containing protein 89 OS=Bos taurus OX=9... [more]
sp|Q96FK6|WDR89_HUMAN8.639e-1042.39WD repeat-containing protein 89 OS=Homo sapiens OX... [more]
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BLAST of WD repeat domain 89 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1V9XAE66.448e-1129.73WD repeat-containing protein 89-like OS=Tropilaela... [more]
A1CNZ95.143e-1028.33WD domain protein OS=Aspergillus clavatus (strain ... [more]
A0A1L9VUQ67.608e-1029.47WD_REPEATS_REGION domain-containing protein OS=Asp... [more]
A0A212EK028.379e-1030.30Putative WD-repeat protein YNL035C OS=Danaus plexi... [more]
M2LWV89.064e-1027.18WD_REPEATS_REGION domain-containing protein OS=Bau... [more]
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BLAST of WD repeat domain 89 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
wdr891.173e-735.16WD repeat domain 89 [Source:NCBI gene;Acc:10304311... [more]
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BLAST of WD repeat domain 89 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of WD repeat domain 89 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
YNL035C_mRNA5.299e-944.78Nuclear protein of unknown function; relocalizes t... [more]
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BLAST of WD repeat domain 89 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of WD repeat domain 89 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
wdr891.170e-937.65WD repeat domain 89 [Source:NCBI gene;Acc:10117335... [more]
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BLAST of WD repeat domain 89 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000066447.10.000e+090.16SMESG000066447.1[more]
SMESG000066447.10.000e+090.16SMESG000066447.1[more]
SMESG000066447.10.000e+090.16SMESG000066447.1[more]
SMESG000066446.12.705e-1193.75SMESG000066446.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30019008 ID=SMED30019008|Name=WD repeat domain 89|organism=Schmidtea mediterranea sexual|type=transcript|length=2286bp
AACTCTTTAATAATGTTTAATAATATAGGAAACCCATTTATTTTTGCAAA
TCATGTTGAATTTTCAGCTTTTTATCAAAAAGATTATAAAGATTATATAA
CTTTATTAAATGAGATGGAATTAACTCTTAAAAATGAGATTGAATCTAAT
ACAGCTAATTCAACTTCTGAAAAAGAAATTTCAAGGATTGAGGATGAATT
TATTATTTTATCTATTCTTCAAAAAATGAAAGATAAGTTAATAGTTGTAC
CGTCATTGTATAATTTTGAATGTGAACTTGATCTTGATGACATCGATTCA
GAAACTGTGGATATTGATATTGGCATGGATTTAATTGAAGCGTTGTTAAA
CAAAAATGTGTGGGGCTTCCCAGAACAGCCACTGAATGAATCTTTTCTAT
CTATATCAAATGCAACTAGCAAAGTATCGATCGGACTTCTTGAAGATCGT
TACATTAAAGAAATTGTTTTAAATAGGCAGATTGACGTTGTTCTTAATTT
GGATAGTTTTGTGAAATTTATTCTGTTTCATTTAAAGGATTTGCAAGAGG
ATTGCTATATACCTTTTCTAAAATTTAGTAACATTTTATTTTAATGCTTT
ACATGAAAAGATTATTGCCAACAATAACAAAATAGGATATTAATGAAATG
AAAGGAAGTTGTTTGATTTTTGACAAACCTCTCTCAAAACGCCCAAATCT
CTCCAAAGAAAAATCGAAATATTTAAAGCATTTAATTTTAGAAAATCATA
AGAAAACCGATTTATTGCACGGGAAAAGATTTACCAGAATCACTAAATCA
AATCTTGGTGTTAAGGTTTCATCTGCTAATGATGCTTTAACAAACTTTAT
AAAAAATATCAATCACGAAAACTTTGATAAAAATATCCAATGTGATAACA
GCACTAATATTACACACAAAACCATATTTGAAAATAAGATAAATATTGAA
AATGATGGAAATCAAAACTGGGAGGATTTGACGATTGATGGTTATGAAAT
TCTATAATAATTATAATACAATATATATAAATTCTCCATCACTTTAGATC
AGTCTTCAAAATATTCATATGCCATCTGGAATTTAATGGGTTTAAACGTA
CTGTTTCGATTGAAAAGTTTTTATAGAATTCTAAATAAACCTGAAGAATC
ACAGAACGTGCCAGAATGTGCTTACATTCGAGTTCACCTTGGTGATAGGG
AAGTTAAAAATAATTCTGAGGAAATATGGAAATCGTTTTTCGGGAGCAAA
ATTAACTTCGACTCTGACATAATGCAAATTATTTTGAATATGAAAACTAA
ATGCATCCAGAATGTCAAAATAGAATCAATGCAAGAATTTAAAAGCAAAA
ATCCTATTATCGAGTCAAAGTACCAAGCCATATTAAAATTTTTGAAAAAT
TGTTTCGGCAGTTTAATACTTTCAAACAGGTATGAGTCGGATTTCTATAT
GCTGAATTTAACTAATAATGAAATAAAAATATATAGATCCACCGAAGAAG
AAAACAGACATGAATTAGATTTAAAAACTTTCGTCAATCTTGATACTATT
TAATATTGTTTAAATATTCGTCAATTAATTTTTGCATAATGATTGTTAAT
AATAAATCTATTGTTAAGTCATTTAAAAATTGTGGAACTAATTTCTCAAA
ATATTGTAAAAGTAGAGGAAACAATTTTTTTCTTGTAGATAATGACAACG
TATATTTATTTGATTTAAGTGTACATAATTTTAAAAAACAATGTTTTAAT
ATTAATAACATAAGTGATATATGTTATAATCAAGAAAAAGATATTTTATT
ATGCAGTTCTTATAAGAATATAATTTGTAAAACTCGTGATAATGAAACTA
TTGTTTATGAAACTCCTCAAGCTTTGGGCTTAAACTTATTGTCTGTTACA
TCATATAAAGATGGAAATTTAATATGTTCGGGTGCTGCGGTGAAAGAATC
GCTTTTTGAAAAAGGTGAAAGTGATGCCCTATTAGTTTTTTGGGATATTC
GTAATCCATCTACACCAATTGGATATTATAAAGATTCACATTCAGATAAT
ATTGTATCTTTATCTTTTATGGATAATTTATTATTATCTGGTGGAGAGGA
TGGTCTAATAAACGTTTACGATATTCGTCAGGCGTCCGAAGAAGATGCTC
TATTAACTGTAATTATTTTTCTGCAATATTCAATAGTAATAATATTTAAC
GTTTCTCTGACAGTTACCTATTTCAATTTAGTCACAAATTAAATTTTATT
GCTTACAAACTGTTATATATATTTTCGATTTTAAAG
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protein sequence of SMED30019008-orf-1

>SMED30019008-orf-1 ID=SMED30019008-orf-1|Name=SMED30019008-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=156bp
MGLNVLFRLKSFYRILNKPEESQNVPECAYIRVHLGDREVKNNSEEIWKS
FFGSKINFDSDIMQIILNMKTKCIQNVKIESMQEFKSKNPIIESKYQAIL
KFLKNCFGSLILSNRYESDFYMLNLTNNEIKIYRSTEEENRHELDLKTFV
NLDTI*
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protein sequence of SMED30019008-orf-2

>SMED30019008-orf-2 ID=SMED30019008-orf-2|Name=SMED30019008-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=198bp
NSLIMFNNIGNPFIFANHVEFSAFYQKDYKDYITLLNEMELTLKNEIESN
TANSTSEKEISRIEDEFIILSILQKMKDKLIVVPSLYNFECELDLDDIDS
ETVDIDIGMDLIEALLNKNVWGFPEQPLNESFLSISNATSKVSIGLLEDR
YIKEIVLNRQIDVVLNLDSFVKFILFHLKDLQEDCYIPFLKFSNILF*
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protein sequence of SMED30019008-orf-3

>SMED30019008-orf-3 ID=SMED30019008-orf-3|Name=SMED30019008-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=120bp
MKGSCLIFDKPLSKRPNLSKEKSKYLKHLILENHKKTDLLHGKRFTRITK
SNLGVKVSSANDALTNFIKNINHENFDKNIQCDNSTNITHKTIFENKINI
ENDGNQNWEDLTIDGYEIL*
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protein sequence of SMED30019008-orf-4

>SMED30019008-orf-4 ID=SMED30019008-orf-4|Name=SMED30019008-orf-4|organism=Schmidtea mediterranea sexual|type=polypeptide|length=218bp
MIVNNKSIVKSFKNCGTNFSKYCKSRGNNFFLVDNDNVYLFDLSVHNFKK
QCFNINNISDICYNQEKDILLCSSYKNIICKTRDNETIVYETPQALGLNL
LSVTSYKDGNLICSGAAVKESLFEKGESDALLVFWDIRNPSTPIGYYKDS
HSDNIVSLSFMDNLLLSGGEDGLINVYDIRQASEEDALLTVIIFLQYSIV
IIFNVSLTVTYFNLVTN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR039328WDR89
IPR036322WD40_repeat_dom_sf
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
GO:0003674molecular_function
Vocabulary: cellular component
TermDefinition
GO:0005575cellular_component
Vocabulary: biological process
TermDefinition
GO:0008150biological_process
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 140..178
e-value: 0.0072
score: 25.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 148..187
score: 10.408
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3DG3DSA:2.130.10.10coord: 13..200
e-value: 1.6E-14
score: 55.7
IPR039328WD repeat-containing protein 89PANTHERPTHR22889UNCHARACTERIZEDcoord: 33..192
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 126..187
score: 10.759
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILYSSF50978WD40 repeat-likecoord: 26..183
NoneNo IPR availableTMHMMTMhelixcoord: 187..209