Tubulin beta chain

Overview


Name	Tubulin beta chain
Smed ID	SMED30018979
Length (bp)	709

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Tubulin beta chain (SMED30018979) t-SNE clustered cells

Violin plots show distribution of expression levels for Tubulin beta chain (SMED30018979) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Tubulin beta chain (SMED30018979) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Tubulin beta chain (SMED30018979) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30018979

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Lifecycle
prepharyngeal region	SMED30018979	h1SMcG0007869	SmedASXL_008674	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
Smed sexual biotype	SMED30018979	h1SMcG0004197	Contig5007	GPL15192	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30018979	h1SMcG0007869	Contig5007	GPL15192	PMID:29674431 Fincher et al., 2018
zeta neoblast	SMED30018979	h1SMcG0007869	dd_Smed_v4_13626_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
testis	SMED30018979	h1SMcG0007869	Contig5007_SE3	GPL10652	PMID:20844018 Wang et al., 2010
early male germ cell	SMED30018979	h1SMcG0007869	Contig5007_SE3	GPL10652	PMID:20844018 Wang et al., 2010
testis primordium	SMED30018979	h1SMcG0007869	Contig5007_SE3	GPL10652	PMID:20844018 Wang et al., 2010	juvenile stage
neoblast	SMED30018979	h1SMcG0007869	SMED_05331_V2_1	GPL14150	PMID:22385657 Wagner et al., 2012
neoblast	SMED30018979	h1SMcG0007869	SMED_05331_V2_1	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012

Note: Hover over icons to view figure legend

Homology

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BLAST of Tubulin beta chain vs. Ensembl Human
Match: TUBB (tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778])

HSP 1 Score: 233.417 bits (594), Expect = 3.244e-75
Identity = 106/118 (89.83%), Postives = 117/118 (99.15%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+VTFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  240 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 357

[Close]

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+VTFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  240 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 357

[Close]

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+VTFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  240 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 357

[Close]

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+VTFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  240 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 357

[Close]

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+VTFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  240 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 357

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BLAST of Tubulin beta chain vs. Ensembl Celegans
Match: tbb-4 (Tubulin beta-4 chain [Source:UniProtKB/Swiss-Prot;Acc:P41937])

HSP 1 Score: 231.106 bits (588), Expect = 8.803e-74
Identity = 105/119 (88.24%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAAMFRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+ TF+GN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+ATA
Sbjct:  312 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGVKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATA 430

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BLAST of Tubulin beta chain vs. Ensembl Celegans
Match: tbb-2 (Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P52275])

HSP 1 Score: 230.335 bits (586), Expect = 1.633e-73
Identity = 103/119 (86.55%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAAMFRGR+SM+EVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+ TF+GN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQ+ATA
Sbjct:  312 TVAAMFRGRMSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQEATA 430

[Close]

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAAMFRGR+SM+EVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+ TF+GN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQ+ATA
Sbjct:  312 TVAAMFRGRMSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQEATA 430

[Close]

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAAMFRGR+SM+EVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+ TF+GN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQ+ATA
Sbjct:  312 TVAAMFRGRMSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQEATA 430

[Close]

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAAMFRGR+SM+EVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+ TF+GN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQYQ+ATA
Sbjct:  312 TVAAMFRGRMSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQEATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Fly
Match: betaTub56D (gene:FBgn0284243 transcript:FBtr0086536)

HSP 1 Score: 230.335 bits (586), Expect = 2.328e-73
Identity = 104/118 (88.14%), Postives = 116/118 (98.31%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAA+FRGR+SMKEVDE+MLN+QNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct:  312 TVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAT 429

[Close]

BLAST of Tubulin beta chain vs. Ensembl Fly
Match: betaTub56D (gene:FBgn0284243 transcript:FBtr0086537)

HSP 1 Score: 229.95 bits (585), Expect = 3.302e-73
Identity = 104/118 (88.14%), Postives = 116/118 (98.31%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAA+FRGR+SMKEVDE+MLN+QNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+AT
Sbjct:  321 TVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAT 438

[Close]

BLAST of Tubulin beta chain vs. Ensembl Fly
Match: betaTub85D (gene:FBgn0003889 transcript:FBtr0082046)

HSP 1 Score: 228.024 bits (580), Expect = 1.645e-72
Identity = 102/119 (85.71%), Postives = 116/119 (97.48%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLN+QNKNSS+FVEWIP+N KTAVCDI PRG+KMS TFIGN+TAIQE+FKR++EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+ATA
Sbjct:  312 TVAAIFRGRMSMKEVDEQMLNIQNKNSSFFVEWIPNNCKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Fly
Match: betaTub60D (gene:FBgn0003888 transcript:FBtr0343443)

HSP 1 Score: 228.024 bits (580), Expect = 2.311e-72
Identity = 105/119 (88.24%), Postives = 115/119 (96.64%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+ML VQNKNSSYFVEWIP+NVKTAVCDI P+G+KMS TFIGN TAIQE+FKRI+EQ+SAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+ATA
Sbjct:  317 TVAAVFRGRMSMKEVDEQMLAVQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATA 435

[Close]

BLAST of Tubulin beta chain vs. Ensembl Fly
Match: betaTub60D (gene:FBgn0003888 transcript:FBtr0072270)

HSP 1 Score: 227.639 bits (579), Expect = 2.612e-72
Identity = 105/119 (88.24%), Postives = 115/119 (96.64%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+ML VQNKNSSYFVEWIP+NVKTAVCDI P+G+KMS TFIGN TAIQE+FKRI+EQ+SAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+ATA
Sbjct:  318 TVAAVFRGRMSMKEVDEQMLAVQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATA 436

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BLAST of Tubulin beta chain vs. Ensembl Zebrafish
Match: tubb2b (tubulin, beta 2b [Source:ZFIN;Acc:ZDB-GENE-030131-722])

HSP 1 Score: 233.417 bits (594), Expect = 1.620e-74
Identity = 106/119 (89.08%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+ TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Zebrafish
Match: zgc:153426 (zgc:153426 [Source:ZFIN;Acc:ZDB-GENE-060929-220])

HSP 1 Score: 233.417 bits (594), Expect = 1.648e-74
Identity = 106/119 (89.08%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+ TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Zebrafish
Match: zgc:55461 (zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879])

HSP 1 Score: 233.417 bits (594), Expect = 1.966e-74
Identity = 106/119 (89.08%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+ TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+ TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+ TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Xenopus
Match: reps2 (RALBP1 associated Eps domain containing 2 [Source:Xenbase;Acc:XB-GENE-985000])

HSP 1 Score: 234.572 bits (597), Expect = 3.577e-75
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  275 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 393

[Close]

BLAST of Tubulin beta chain vs. Ensembl Xenopus
Match: znf330 (zinc finger protein 330 [Source:Xenbase;Acc:XB-GENE-1010548])

HSP 1 Score: 234.572 bits (597), Expect = 8.752e-75
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Xenopus
Match: reps2 (RALBP1 associated Eps domain containing 2 [Source:Xenbase;Acc:XB-GENE-985000])

HSP 1 Score: 234.187 bits (596), Expect = 1.086e-74
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Xenopus
Match: tubb (tubulin beta class I [Source:NCBI gene;Acc:448742])

HSP 1 Score: 233.417 bits (594), Expect = 2.730e-74
Identity = 106/118 (89.83%), Postives = 117/118 (99.15%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+VTFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

[Close]

BLAST of Tubulin beta chain vs. Ensembl Xenopus
Match: ubxn11 (UBX domain protein 11 [Source:Xenbase;Acc:XB-GENE-985480])

HSP 1 Score: 228.024 bits (580), Expect = 3.020e-72
Identity = 103/116 (88.79%), Postives = 114/116 (98.28%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 350
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+ TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct:  312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427

[Close]

BLAST of Tubulin beta chain vs. Ensembl Mouse
Match: Tubb2b (tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960])

HSP 1 Score: 234.572 bits (597), Expect = 6.487e-75
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Mouse
Match: Tubb2a (tubulin, beta 2A class IIA [Source:MGI Symbol;Acc:MGI:107861])

HSP 1 Score: 234.572 bits (597), Expect = 6.700e-75
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Mouse
Match: Tubb5 (tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812])

HSP 1 Score: 233.417 bits (594), Expect = 2.067e-74
Identity = 106/118 (89.83%), Postives = 117/118 (99.15%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+VTFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

[Close]

BLAST of Tubulin beta chain vs. Ensembl Mouse
Match: Tubb4b (tubulin, beta 4B class IVB [Source:MGI Symbol;Acc:MGI:1915472])

HSP 1 Score: 229.18 bits (583), Expect = 7.913e-73
Identity = 104/116 (89.66%), Postives = 114/116 (98.28%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 350
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct:  312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427

[Close]

BLAST of Tubulin beta chain vs. Ensembl Mouse
Match: Tubb3 (tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813])

HSP 1 Score: 224.942 bits (572), Expect = 4.868e-71
Identity = 102/119 (85.71%), Postives = 114/119 (95.80%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVA +FRGR+SMKEVDE+ML +Q+KNSSYFVEWIP+NVK AVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. UniProt/SwissProt
Match: sp|P02556|TBB_LYTPI (Tubulin beta chain (Fragment) OS=Lytechinus pictus OX=7653 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.147e-77
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:   43 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 161

[Close]

BLAST of Tubulin beta chain vs. UniProt/SwissProt
Match: sp|P18700|TBB_STRPU (Tubulin beta chain (Fragment) OS=Strongylocentrotus purpuratus OX=7668 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.964e-76
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  157 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 275

[Close]

BLAST of Tubulin beta chain vs. UniProt/SwissProt
Match: sp|P30883|TBB4_XENLA (Tubulin beta-4 chain OS=Xenopus laevis OX=8355 GN=tubb4 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.441e-74
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. UniProt/SwissProt
Match: sp|P32882|TBB2_CHICK (Tubulin beta-2 chain OS=Gallus gallus OX=9031 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.538e-74
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. UniProt/SwissProt
Match: sp|Q3KRE8|TBB2B_RAT (Tubulin beta-2B chain OS=Rattus norvegicus OX=10116 GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.538e-74
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. TrEMBL
Match: A0A3P7NBH0 (Tubulin_C domain-containing protein OS=Dibothriocephalus latus OX=60516 GN=DILT_LOCUS18098 PE=4 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 4.486e-76
Identity = 107/119 (89.92%), Postives = 118/119 (99.16%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAAMFRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMSVTF+GN+TAIQE+FKR++EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:    2 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSVTFVGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 120

[Close]

BLAST of Tubulin beta chain vs. TrEMBL
Match: A9CTA5 (Beta-tubulin (Fragment) OS=Pinctada fucata OX=50426 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.650e-75
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAAMFRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TF+GN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:   41 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 159

[Close]

BLAST of Tubulin beta chain vs. TrEMBL
Match: A0A3S5FFD8 (Tubulin_C domain-containing protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS24608 PE=4 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.035e-75
Identity = 107/119 (89.92%), Postives = 118/119 (99.16%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMSVTFIGN+TAIQE+FKR++EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:   46 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 164

[Close]

BLAST of Tubulin beta chain vs. TrEMBL
Match: Q5BYA7 (Tubulin_C domain-containing protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.644e-75
Identity = 107/119 (89.92%), Postives = 118/119 (99.16%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMSVTFIGN+TAIQE+FKR++EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:   46 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 164

[Close]

BLAST of Tubulin beta chain vs. TrEMBL
Match: Q5BXV9 (Tubulin_C domain-containing protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 3.026e-75
Identity = 107/119 (89.92%), Postives = 118/119 (99.16%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMSVTFIGN+TAIQE+FKR++EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:   20 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 138

[Close]

BLAST of Tubulin beta chain vs. Ensembl Cavefish
Match: zgc:55461 (tubulin beta-4B chain [Source:NCBI gene;Acc:103024068])

HSP 1 Score: 233.417 bits (594), Expect = 1.562e-74
Identity = 106/119 (89.08%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+ TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Cavefish
Match: ENSAMXT00000019550.2 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000026.1:1405913:1407004:-1 gene:ENSAMXG00000018987.2 transcript:ENSAMXT00000019550.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 230.72 bits (587), Expect = 1.615e-74
Identity = 104/116 (89.66%), Postives = 115/116 (99.14%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 350
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+VTFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct:  231 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 346

[Close]

BLAST of Tubulin beta chain vs. Ensembl Cavefish
Match: TUBB2A (tubulin beta-2A chain [Source:NCBI gene;Acc:103041736])

HSP 1 Score: 232.646 bits (592), Expect = 2.348e-73
Identity = 105/119 (88.24%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+ML+VQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+F+RI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  389 TVAAIFRGRMSMKEVDEQMLSVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFRRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 507

[Close]

BLAST of Tubulin beta chain vs. Ensembl Cavefish
Match: TUBB1 (tubulin beta 1 class VI [Source:HGNC Symbol;Acc:HGNC:16257])

HSP 1 Score: 215.312 bits (547), Expect = 1.477e-67
Identity = 95/119 (79.83%), Postives = 109/119 (91.60%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVA +FRGR+S KEVDE+ML +Q KNS+YFV+WIP NVK AVCDI PRG+KM+ TFIGNNTAIQEIF+R+ EQ++ MFRRKAFLHWYTGEGMDEMEFTEAE+N+NDLVSEYQQYQDATA
Sbjct:  286 TVAGIFRGRMSTKEVDEQMLAIQQKNSNYFVDWIPHNVKVAVCDIPPRGLKMASTFIGNNTAIQEIFRRVGEQFAMMFRRKAFLHWYTGEGMDEMEFTEAENNLNDLVSEYQQYQDATA 404

[Close]

BLAST of Tubulin beta chain vs. Ensembl Cavefish
Match: ENSAMXT00000019222.2 (tubulin alpha-1 chain [Source:NCBI gene;Acc:103031418])

HSP 1 Score: 85.1149 bits (209), Expect = 7.882e-19
Identity = 39/117 (33.33%), Postives = 69/117 (58.97%), Query Frame = 3

Query:   15 MFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAV----CDIAPRG----MKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 341
            ++RG V  K+V+  + N++ K S  FV+W P+  K  +      + P G    ++ +V  + N TAI E + R+  ++  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  318 LYRGDVVPKDVNAAIANIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434

[Close]

BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
Match: tubb2 (tubulin, beta 2A class IIa [Source:ZFIN;Acc:ZDB-GENE-050522-384])

HSP 1 Score: 153.68 bits (387), Expect = 3.087e-45
Identity = 69/81 (85.19%), Postives = 79/81 (97.53%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRK 245
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRK
Sbjct:  295 TVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRK 375

[Close]

BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001368.1 (pep scaffold:Pmarinus_7.0:GL476337:866089:875956:-1 gene:ENSPMAG00000001230.1 transcript:ENSPMAT00000001368.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 80.8777 bits (198), Expect = 5.918e-18
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 3

Query:    6 VAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVSEYQQ 341
             A M RG V + +V   +  +  K S +FV+W     KT +C + P G   S+  + NNT ++  F  I E+++ ++RRKA LH YT  EGM+   FTEA S++  ++ EY Q
Sbjct:  346 CALMVRGNVQLSDVRRNIERL--KPSLHFVDWNEEGWKTGLCSVPPVGYPHSLLALANNTCVKHTFADIQERFARLYRRKAHLHHYTDVEGMELSCFTEAASSLASVIEEYNQ 456

[Close]

BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
Match: tubg1 (tubulin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-836])

HSP 1 Score: 56.6102 bits (135), Expect = 1.014e-9
Identity = 29/117 (24.79%), Postives = 61/117 (52.14%), Query Frame = 3

Query:    6 VAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAP---RGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGM---DEMEFTEAESNMNDLVSEYQ 338
            +  + +G V   +V + +  ++ +  + F+ W P++++ A+   +P      ++S   + N+T+I  +F R  +QY  + +R+AFL  +  E M   D  EF ++   +  L+ EYQ
Sbjct:  315 ILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLTSAHRVSGLMMANHTSISSLFDRTCKQYDKLRKREAFLDQFRKEDMFKEDLSEFDDSREVVQQLIDEYQ 431

[Close]

BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
Match: tubd1 (tubulin, delta 1 [Source:ZFIN;Acc:ZDB-GENE-040625-73])

HSP 1 Score: 46.595 bits (109), Expect = 2.084e-6
Identity = 24/104 (23.08%), Postives = 49/104 (47.12%), Query Frame = 3

Query:   36 MKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCD--IAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 341
            ++  D     +  + +   + W+P     AV     AP G   S T + N+TA+    +    +   MF  +A++H YT  G+ E +F ++ + +  +++ Y+Q
Sbjct:  345 LRGPDAHATPLGFQRTPMALPWVPPEAALAVWSERRAPTGYGKSATLLANDTAVISPVEHAVSKAWRMFVSRAYVHQYTHHGVSEEDFLDSFTLLEQVIASYRQ 448

[Close]

BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
Match: tubd1 (tubulin, delta 1 [Source:ZFIN;Acc:ZDB-GENE-040625-73])

HSP 1 Score: 45.8246 bits (107), Expect = 3.251e-6
Identity = 23/86 (26.74%), Postives = 42/86 (48.84%), Query Frame = 3

Query:   90 FVEWIPSNVKTAVCD--IAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 341
               W+P     AV     AP G   S T + N+TA+    +    +   MF  +A++H YT  G+ E +F ++ + +  +++ Y+Q
Sbjct:  349 LCRWVPPEAALAVWSERRAPTGYGKSATLLANDTAVISPVEHAVSKAWRMFVSRAYVHQYTHHGVSEEDFLDSFTLLEQVIASYRQ 434

[Close]

BLAST of Tubulin beta chain vs. Ensembl Yeast
Match: TUB2 (Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules; mutation in human ortholog is associated with congenital fibrosis of the extraocular muscles (CFEOM) with polymicrogyria [Source:SGD;Acc:S000001857])

HSP 1 Score: 197.978 bits (502), Expect = 1.142e-61
Identity = 87/118 (73.73%), Postives = 108/118 (91.53%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAA FRG+VS+KEV++EM  VQ+KNS YFVEWIP+NV+TAVC +AP+G+ M+ TFI N+T+IQE+FKR+ +Q+SAMF+RKAFLHWYT EGMDE+EF+EAESNMNDLVSEYQQYQ+AT
Sbjct:  312 TVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSVAPQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQEAT 429

[Close]

BLAST of Tubulin beta chain vs. Ensembl Yeast
Match: TUB3 (Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; expressed at lower level than Tub1p; TUB3 has a paralog, TUB1, that arose from the whole genome duplication [Source:SGD;Acc:S000004593])

HSP 1 Score: 84.7297 bits (208), Expect = 1.320e-19
Identity = 40/115 (34.78%), Postives = 65/115 (56.52%), Query Frame = 3

Query:   15 MFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMS--------VTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 335
            ++RG V  ++V   +  V+NK +   V+W P+  K  +C   P  +  S        V  + N TAI + +KRI +++  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y
Sbjct:  319 LYRGDVVTRDVQRAVEQVKNKKTVQMVDWCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433

[Close]

BLAST of Tubulin beta chain vs. Ensembl Yeast
Match: TUB1 (Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; relative distribution to nuclear foci increases upon DNA replication stress; TUB1 has a paralog, TUB3, that arose from the whole genome duplication [Source:SGD;Acc:S000004550])

HSP 1 Score: 84.7297 bits (208), Expect = 1.408e-19
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 3

Query:   15 MFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMS--------VTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 335
            ++RG V  ++V   +  V+NK +   V+W P+  K  +C   P     S        V  + N T+I E +KRI  ++  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y
Sbjct:  319 LYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433

[Close]

BLAST of Tubulin beta chain vs. Ensembl Nematostella
Match: EDO36734 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SHY4])

HSP 1 Score: 234.958 bits (598), Expect = 1.073e-76
Identity = 107/118 (90.68%), Postives = 116/118 (98.31%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAAMFRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  222 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 339

[Close]

BLAST of Tubulin beta chain vs. Ensembl Nematostella
Match: EDO39945 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8I3])

HSP 1 Score: 236.113 bits (601), Expect = 5.296e-76
Identity = 108/119 (90.76%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAAMFRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Nematostella
Match: EDO35958 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJX9])

HSP 1 Score: 234.572 bits (597), Expect = 2.318e-75
Identity = 107/118 (90.68%), Postives = 116/118 (98.31%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAAMFRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  312 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

[Close]

BLAST of Tubulin beta chain vs. Ensembl Nematostella
Match: EDO42890 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S027])

HSP 1 Score: 233.417 bits (594), Expect = 4.251e-75
Identity = 106/118 (89.83%), Postives = 116/118 (98.31%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAAMFRGR+SMKE+DE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  308 TVAAMFRGRMSMKELDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 425

[Close]

BLAST of Tubulin beta chain vs. Ensembl Nematostella
Match: EDO35959 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJY0])

HSP 1 Score: 225.328 bits (573), Expect = 1.427e-73
Identity = 104/118 (88.14%), Postives = 113/118 (95.76%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAAMFRGR+SMKEV E+MLNVQNKNSSYFVEWIP+NVKTAVCDI P  +KMS TFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
Sbjct:  166 TVAAMFRGRMSMKEVFEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPLVLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 283

[Close]

BLAST of Tubulin beta chain vs. Ensembl Medaka
Match: tubb2 (tubulin beta-2B chain [Source:NCBI gene;Acc:101162245])

HSP 1 Score: 232.646 bits (592), Expect = 4.149e-74
Identity = 105/119 (88.24%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SM+EVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+F+RI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAIFRGRMSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFRRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Medaka
Match: tubb5 (tubulin beta chain [Source:NCBI gene;Acc:101157969])

HSP 1 Score: 229.95 bits (585), Expect = 3.667e-73
Identity = 104/116 (89.66%), Postives = 115/116 (99.14%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 350
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KM+VTFIGN+TAIQE+FKRI+EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct:  312 TVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427

[Close]

BLAST of Tubulin beta chain vs. Ensembl Medaka
Match: ENSORLT00000045809.1 (tubulin beta-6 chain [Source:NCBI gene;Acc:101166121])

HSP 1 Score: 212.231 bits (539), Expect = 5.178e-66
Identity = 93/119 (78.15%), Postives = 109/119 (91.60%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVA +FRG++S KEVDE+ML +Q KNS+YFV+WIP NVK AVCDI P+G++M+ TFIGNNTAIQEIF+R+ EQ+S MFRRKAFLHWYTGEGMDEMEFTEAESN+NDLVSEYQQYQ+ATA
Sbjct:  312 TVAGIFRGKMSTKEVDEQMLAIQQKNSTYFVDWIPHNVKVAVCDIPPKGLRMASTFIGNNTAIQEIFRRVGEQFSLMFRRKAFLHWYTGEGMDEMEFTEAESNLNDLVSEYQQYQEATA 430

[Close]

BLAST of Tubulin beta chain vs. Ensembl Medaka
Match: ENSORLT00000020049.2 (tubulin alpha-1B chain [Source:NCBI gene;Acc:101159587])

HSP 1 Score: 85.5001 bits (210), Expect = 4.957e-19
Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = 3

Query:   15 MFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAV----CDIAPRG----MKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 341
            ++RG V  K+V+  +  ++ K S  FV+W P+  K  +      + P G    +K +V  + N TAI E + R+  ++  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  283 LYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVKRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 399

[Close]

BLAST of Tubulin beta chain vs. Ensembl Medaka
Match: tuba1c (tubulin alpha-1B chain-like [Source:NCBI gene;Acc:101167538])

HSP 1 Score: 84.7297 bits (208), Expect = 5.690e-19
Identity = 39/117 (33.33%), Postives = 68/117 (58.12%), Query Frame = 3

Query:   15 MFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAV----CDIAPRG----MKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 341
            +FRG V  K+V+  +  ++ K +  FV+W P+  K  +      + P G    ++ +V  + N TAI E + R+  ++  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  193 LFRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 309

[Close]

BLAST of Tubulin beta chain vs. Planmine SMEST
Match: SMESG000062548.1 (SMESG000062548.1)

HSP 1 Score: 234.958 bits (598), Expect = 7.594e-76
Identity = 107/118 (90.68%), Postives = 116/118 (98.31%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 356
            TVAAMFRGR+S+KEVDEEMLNVQNKNS+YFVEWIPSNVKTAVCDI PRGMKM+VTFIGNNTAIQEIFKRIAEQY+AM+RRKAFLHWYTGEGMDEMEFTEAESN+NDL+SEYQQ+QD T
Sbjct:  281 TVAAMFRGRLSVKEVDEEMLNVQNKNSAYFVEWIPSNVKTAVCDIPPRGMKMAVTFIGNNTAIQEIFKRIAEQYAAMYRRKAFLHWYTGEGMDEMEFTEAESNLNDLISEYQQFQDTT 398

[Close]

BLAST of Tubulin beta chain vs. Planmine SMEST
Match: SMESG000047291.1 (SMESG000047291.1)

HSP 1 Score: 234.572 bits (597), Expect = 4.127e-75
Identity = 106/119 (89.08%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKR++EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAALFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Planmine SMEST
Match: SMESG000044888.1 (SMESG000044888.1)

HSP 1 Score: 234.572 bits (597), Expect = 4.127e-75
Identity = 106/119 (89.08%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAA+FRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+NVKTAVCDI PRG+KMS TFIGN+TAIQE+FKR++EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAALFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Planmine SMEST
Match: SMESG000074579.1 (SMESG000074579.1)

HSP 1 Score: 234.572 bits (597), Expect = 4.396e-75
Identity = 106/119 (89.08%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAAMFRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+N KTAVCDI PRG+KMSVTFIGN+T+IQE+FKR++EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNAKTAVCDIPPRGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

[Close]

BLAST of Tubulin beta chain vs. Planmine SMEST
Match: SMESG000074423.1 (SMESG000074423.1)

HSP 1 Score: 234.572 bits (597), Expect = 4.396e-75
Identity = 106/119 (89.08%), Postives = 117/119 (98.32%), Query Frame = 3

Query:    3 TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGMKMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 359
            TVAAMFRGR+SMKEVDE+MLNVQNKNSSYFVEWIP+N KTAVCDI PRG+KMSVTFIGN+T+IQE+FKR++EQ++AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  312 TVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNAKTAVCDIPPRGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

The following BLAST results are available for this feature:

BLAST of Tubulin beta chain vs. Ensembl Human
BLAST of Tubulin beta chain vs. Ensembl Celegans
BLAST of Tubulin beta chain vs. Ensembl Fly
BLAST of Tubulin beta chain vs. Ensembl Zebrafish
BLAST of Tubulin beta chain vs. Ensembl Xenopus
BLAST of Tubulin beta chain vs. Ensembl Mouse
BLAST of Tubulin beta chain vs. UniProt/SwissProt
BLAST of Tubulin beta chain vs. TrEMBL
BLAST of Tubulin beta chain vs. Ensembl Cavefish
BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
BLAST of Tubulin beta chain vs. Ensembl Yeast
BLAST of Tubulin beta chain vs. Ensembl Nematostella
BLAST of Tubulin beta chain vs. Ensembl Medaka
BLAST of Tubulin beta chain vs. Planmine SMEST

BLAST of Tubulin beta chain vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
TUBB	3.244e-75	89.83	tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:...	[more]
TUBB	3.244e-75	89.83	tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:...	[more]
TUBB	3.244e-75	89.83	tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:...	[more]
TUBB	3.244e-75	89.83	tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:...	[more]
TUBB	3.244e-75	89.83	tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:...	[more]

BLAST of Tubulin beta chain vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tbb-4	8.803e-74	88.24	Tubulin beta-4 chain [Source:UniProtKB/Swiss-Prot...	[more]
tbb-2	1.633e-73	86.55	Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot...	[more]
tbb-2	1.633e-73	86.55	Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot...	[more]
tbb-2	1.633e-73	86.55	Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot...	[more]
tbb-2	1.633e-73	86.55	Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot...	[more]

BLAST of Tubulin beta chain vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
betaTub56D	2.328e-73	88.14	gene:FBgn0284243 transcript:FBtr0086536	[more]
betaTub56D	3.302e-73	88.14	gene:FBgn0284243 transcript:FBtr0086537	[more]
betaTub85D	1.645e-72	85.71	gene:FBgn0003889 transcript:FBtr0082046	[more]
betaTub60D	2.311e-72	88.24	gene:FBgn0003888 transcript:FBtr0343443	[more]
betaTub60D	2.612e-72	88.24	gene:FBgn0003888 transcript:FBtr0072270	[more]

BLAST of Tubulin beta chain vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tubb2b	1.620e-74	89.08	tubulin, beta 2b [Source:ZFIN;Acc:ZDB-GENE-030131-...	[more]
zgc:153426	1.648e-74	89.08	zgc:153426 [Source:ZFIN;Acc:ZDB-GENE-060929-220]	[more]
zgc:55461	1.966e-74	89.08	zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879]	[more]
zgc:55461	1.966e-74	89.08	zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879]	[more]
zgc:55461	1.966e-74	89.08	zgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879]	[more]

BLAST of Tubulin beta chain vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
reps2	3.577e-75	89.92	RALBP1 associated Eps domain containing 2 [Source:...	[more]
znf330	8.752e-75	89.92	zinc finger protein 330 [Source:Xenbase;Acc:XB-GEN...	[more]
reps2	1.086e-74	89.92	RALBP1 associated Eps domain containing 2 [Source:...	[more]
tubb	2.730e-74	89.83	tubulin beta class I [Source:NCBI gene;Acc:448742]	[more]
ubxn11	3.020e-72	88.79	UBX domain protein 11 [Source:Xenbase;Acc:XB-GENE-...	[more]

BLAST of Tubulin beta chain vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Tubb2b	6.487e-75	89.92	tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:...	[more]
Tubb2a	6.700e-75	89.92	tubulin, beta 2A class IIA [Source:MGI Symbol;Acc:...	[more]
Tubb5	2.067e-74	89.83	tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI...	[more]
Tubb4b	7.913e-73	89.66	tubulin, beta 4B class IVB [Source:MGI Symbol;Acc:...	[more]
Tubb3	4.868e-71	85.71	tubulin, beta 3 class III [Source:MGI Symbol;Acc:M...	[more]

BLAST of Tubulin beta chain vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P02556\|TBB_LYTPI	1.147e-77	89.92	Tubulin beta chain (Fragment) OS=Lytechinus pictus...	[more]
sp\|P18700\|TBB_STRPU	1.964e-76	89.92	Tubulin beta chain (Fragment) OS=Strongylocentrotu...	[more]
sp\|P30883\|TBB4_XENLA	4.441e-74	89.92	Tubulin beta-4 chain OS=Xenopus laevis OX=8355 GN=...	[more]
sp\|P32882\|TBB2_CHICK	4.538e-74	89.92	Tubulin beta-2 chain OS=Gallus gallus OX=9031 PE=1...	[more]
sp\|Q3KRE8\|TBB2B_RAT	4.538e-74	89.92	Tubulin beta-2B chain OS=Rattus norvegicus OX=1011...	[more]

BLAST of Tubulin beta chain vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A3P7NBH0	4.486e-76	89.92	Tubulin_C domain-containing protein OS=Dibothrioce...	[more]
A9CTA5	1.650e-75	89.92	Beta-tubulin (Fragment) OS=Pinctada fucata OX=5042...	[more]
A0A3S5FFD8	2.035e-75	89.92	Tubulin_C domain-containing protein OS=Protopolyst...	[more]
Q5BYA7	2.644e-75	89.92	Tubulin_C domain-containing protein OS=Schistosoma...	[more]
Q5BXV9	3.026e-75	89.92	Tubulin_C domain-containing protein OS=Schistosoma...	[more]

BLAST of Tubulin beta chain vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
zgc:55461	1.562e-74	89.08	tubulin beta-4B chain [Source:NCBI gene;Acc:103024...	[more]
ENSAMXT00000019550.2	1.615e-74	89.66	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
TUBB2A	2.348e-73	88.24	tubulin beta-2A chain [Source:NCBI gene;Acc:103041...	[more]
TUBB1	1.477e-67	79.83	tubulin beta 1 class VI [Source:HGNC Symbol;Acc:HG...	[more]
ENSAMXT00000019222.2	7.882e-19	33.33	tubulin alpha-1 chain [Source:NCBI gene;Acc:103031...	[more]

BLAST of Tubulin beta chain vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tubb2	3.087e-45	85.19	tubulin, beta 2A class IIa [Source:ZFIN;Acc:ZDB-GE...	[more]
ENSPMAT00000001368.1	5.918e-18	37.17	pep scaffold:Pmarinus_7.0:GL476337:866089:875956:-...	[more]
tubg1	1.014e-9	24.79	tubulin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-...	[more]
tubd1	2.084e-6	23.08	tubulin, delta 1 [Source:ZFIN;Acc:ZDB-GENE-040625-...	[more]
tubd1	3.251e-6	26.74	tubulin, delta 1 [Source:ZFIN;Acc:ZDB-GENE-040625-...	[more]

BLAST of Tubulin beta chain vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 3


Match Name	E-value	Identity	Description
TUB2	1.142e-61	73.73	Beta-tubulin; associates with alpha-tubulin (Tub1p...	[more]
TUB3	1.320e-19	34.78	Alpha-tubulin; associates with beta-tubulin (Tub2p...	[more]
TUB1	1.408e-19	34.78	Alpha-tubulin; associates with beta-tubulin (Tub2p...	[more]

BLAST of Tubulin beta chain vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO36734	1.073e-76	90.68	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO39945	5.296e-76	90.76	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO35958	2.318e-75	90.68	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42890	4.251e-75	89.83	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO35959	1.427e-73	88.14	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Tubulin beta chain vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tubb2	4.149e-74	88.24	tubulin beta-2B chain [Source:NCBI gene;Acc:101162...	[more]
tubb5	3.667e-73	89.66	tubulin beta chain [Source:NCBI gene;Acc:101157969...	[more]
ENSORLT00000045809.1	5.178e-66	78.15	tubulin beta-6 chain [Source:NCBI gene;Acc:1011661...	[more]
ENSORLT00000020049.2	4.957e-19	34.19	tubulin alpha-1B chain [Source:NCBI gene;Acc:10115...	[more]
tuba1c	5.690e-19	33.33	tubulin alpha-1B chain-like [Source:NCBI gene;Acc:...	[more]

BLAST of Tubulin beta chain vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000062548.1	7.594e-76	90.68	SMESG000062548.1	[more]
SMESG000047291.1	4.127e-75	89.08	SMESG000047291.1	[more]
SMESG000044888.1	4.127e-75	89.08	SMESG000044888.1	[more]
SMESG000074579.1	4.396e-75	89.08	SMESG000074579.1	[more]
SMESG000074423.1	4.396e-75	89.08	SMESG000074423.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30018979 ID=SMED30018979|Name=Tubulin beta chain|organism=Schmidtea mediterranea sexual|type=transcript|length=709bp
TAACAGTCGCCGCAATGTTCAGAGGGAGAGTATCAATGAAAGAGGTCGAC
GAAGAAATGCTCAATGTTCAAAACAAAAACAGCTCTTACTTTGTCGAATG
GATACCAAGCAATGTGAAAACTGCAGTCTGTGACATTGCTCCAAGAGGAA
TGAAGATGTCTGTGACATTTATTGGAAATAACACGGCAATTCAGGAAATA
TTCAAACGAATCGCTGAACAATACAGTGCGATGTTTCGTCGAAAAGCCTT
TCTTCATTGGTACACTGGTGAAGGAATGGACGAAATGGAATTCACCGAAG
CAGAATCAAACATGAATGATTTGGTTAGTGAGTATCAACAGTATCAAGAC
GCCACTGCTGAAGAAGAAGTGGAGTTTGAAGAAGAGGAAGAAGGCGAACA
AATGTAAATCCTTTTATGAGTAAGGAACTGTTTACAATTAAATGTGTTAT
GATCAATGTGAAATTGTTGTACTTTTTCTTGCTGTATGTGTTATATTCTT
AGATATTTTTCAAATTGTCTCTCTACTTCACATGATAAAAGTATTTATTG
CAAATATTATATCCTGCCAACCGATGAAAAAGTTCAAATTGTAATAATAT
GAATAATTACTGTCAACTATTATTGGCAATATTATATGTATTGAATATTT
GTTGCTTGTCTTATTAAATGAGGCCGGTCATGTTGTGGTTGAGTGTCAAT
TTAAATGTA

protein sequence of SMED30018979-orf-1

>SMED30018979-orf-1 ID=SMED30018979-orf-1|Name=SMED30018979-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=135bp
TVAAMFRGRVSMKEVDEEMLNVQNKNSSYFVEWIPSNVKTAVCDIAPRGM
KMSVTFIGNNTAIQEIFKRIAEQYSAMFRRKAFLHWYTGEGMDEMEFTEA
ESNMNDLVSEYQQYQDATAEEEVEFEEEEEGEQM*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000014	zeta neoblast
PLANA:0000208	testis
PLANA:0000429	neoblast
PLANA:0002030	early male germ cell
PLANA:0003304	testis primordium

Vocabulary: **INTERPRO**
Term	Definition
IPR037103	Tubulin/FtsZ_C_sf
IPR000217	Tubulin
IPR002453	Beta_tubulin
IPR018316	Tubulin/FtsZ_2-layer-sand-dom
IPR023123	Tubulin_C
IPR008280	Tub_FtsZ_C

Vocabulary: **biological process**
Term	Definition
GO:0007017	microtubule-based process
GO:0007010	cytoskeleton organization

Vocabulary: **cellular component**
Term	Definition
GO:0005874	microtubule
GO:0005737	cytoplasm
GO:0005856	cytoskeleton

Vocabulary: **molecular function**
Term	Definition
GO:0005525	GTP binding
GO:0005200	structural constituent of cytoskeleton
GO:0000166	nucleotide binding
GO:0003924	GTPase activity

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 66..77 score: 56.95 coord: 36..59 score: 69.69 coord: 18..32 score: 83.16
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	PFAM	PF03953	Tubulin_C	coord: 2..71 e-value: 6.4E-21 score: 74.8
IPR023123	Tubulin, C-terminal	GENE3D	G3DSA:1.10.287.600		coord: 63..87 e-value: 1.6E-10 score: 42.5
IPR037103	Tubulin/FtsZ, C-terminal domain superfamily	GENE3D	G3DSA:3.30.1330.20		coord: 1..62 e-value: 1.7E-25 score: 91.3
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 1..87
None	No IPR available	PANTHER	PTHR11588:SF61	TUBULIN BETA CHAIN	coord: 1..87
IPR008280	Tubulin/FtsZ, C-terminal	SUPERFAMILY	SSF55307	Tubulin C-terminal domain-like	coord: 2..87