WW domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30018971 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 1
Homology
BLAST of WW domain-containing protein vs. Ensembl Human
Match: FNBP4 (formin binding protein 4 [Source:HGNC Symbol;Acc:HGNC:19752]) HSP 1 Score: 50.0618 bits (118), Expect = 6.037e-6 Identity = 32/105 (30.48%), Postives = 57/105 (54.29%), Query Frame = 3 Query: 534 TEQVDEAEKYLKSTIKKMSETLKNKIEVLIHDGFGNDNLKDISIQIKTRLEDWSEGYLSLNRKVDKLRESLIEISRFEASLETDKWRLQWNSDKNQYFCVSIEDG 848 T +V+E E+ LK I +++ TL +K E L + N + +Q +TR+ DW EG L+ N KL+++ ++ ++E + W W+ D +YF V+ + G Sbjct: 517 TPKVEE-EQDLKFQIGELANTLTSKFEFLGINRQSISNFHVLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATPKGWSCHWDRDHRRYFYVNEQSG 620
BLAST of WW domain-containing protein vs. Ensembl Human
Match: FNBP4 (formin binding protein 4 [Source:HGNC Symbol;Acc:HGNC:19752]) HSP 1 Score: 50.0618 bits (118), Expect = 6.037e-6 Identity = 32/105 (30.48%), Postives = 57/105 (54.29%), Query Frame = 3 Query: 534 TEQVDEAEKYLKSTIKKMSETLKNKIEVLIHDGFGNDNLKDISIQIKTRLEDWSEGYLSLNRKVDKLRESLIEISRFEASLETDKWRLQWNSDKNQYFCVSIEDG 848 T +V+E E+ LK I +++ TL +K E L + N + +Q +TR+ DW EG L+ N KL+++ ++ ++E + W W+ D +YF V+ + G Sbjct: 517 TPKVEE-EQDLKFQIGELANTLTSKFEFLGINRQSISNFHVLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATPKGWSCHWDRDHRRYFYVNEQSG 620
BLAST of WW domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000042652.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:4:7554025:7558097:1 gene:ENSXETG00000017564.1 transcript:ENSXETT00000042652.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 49.6766 bits (117), Expect = 5.327e-6 Identity = 28/90 (31.11%), Postives = 47/90 (52.22%), Query Frame = 3 Query: 564 LKSTIKKMSETLKNKIEVLIHDGFGNDNLKDISIQIKTRLEDWSEGYLSLNRKVDKLRESLIEISRFEASLETDKWRLQWNSDKNQYFCV 833 LK I +++ +L +K+E L + N + Q +TR+ DW EG LS N KL+++ +I ++E + W W+ D +YF V Sbjct: 87 LKFQIGELANSLISKLEFLGINRQSVSNFHVLLFQTETRISDWREGALSGNYLKRKLQDATEQIKQYEINATPKGWSCHWDRDHRRYFYV 176
BLAST of WW domain-containing protein vs. Ensembl Mouse
Match: Fnbp4 (formin binding protein 4 [Source:MGI Symbol;Acc:MGI:1860513]) HSP 1 Score: 50.0618 bits (118), Expect = 4.861e-6 Identity = 30/100 (30.00%), Postives = 53/100 (53.00%), Query Frame = 3 Query: 549 EAEKYLKSTIKKMSETLKNKIEVLIHDGFGNDNLKDISIQIKTRLEDWSEGYLSLNRKVDKLRESLIEISRFEASLETDKWRLQWNSDKNQYFCVSIEDG 848 E E+ LK I +++ TL +K E L + N + +Q +TR+ DW EG L+ N KL+++ ++ ++E + W W+ D +YF V+ + G Sbjct: 575 EEEQDLKFQIGELANTLTSKFEFLGINRQSISNFHMLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATPKGWSCHWDRDHRRYFYVNEQSG 674
BLAST of WW domain-containing protein vs. Ensembl Mouse
Match: Fnbp4 (formin binding protein 4 [Source:MGI Symbol;Acc:MGI:1860513]) HSP 1 Score: 50.0618 bits (118), Expect = 5.300e-6 Identity = 30/100 (30.00%), Postives = 53/100 (53.00%), Query Frame = 3 Query: 549 EAEKYLKSTIKKMSETLKNKIEVLIHDGFGNDNLKDISIQIKTRLEDWSEGYLSLNRKVDKLRESLIEISRFEASLETDKWRLQWNSDKNQYFCVSIEDG 848 E E+ LK I +++ TL +K E L + N + +Q +TR+ DW EG L+ N KL+++ ++ ++E + W W+ D +YF V+ + G Sbjct: 528 EEEQDLKFQIGELANTLTSKFEFLGINRQSISNFHMLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATPKGWSCHWDRDHRRYFYVNEQSG 627
BLAST of WW domain-containing protein vs. TrEMBL
Match: A0A087VZ22 (WW Rsp5 WWP OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000124600 PE=4 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.886e-9 Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 3 Query: 84 VKEFLADAECIAHSSVFSEDNSCEPKTEWIEEIDSRTNFPFYWNSNTKESVWDMPKEYNDYMIKYEAYLR 293 V+ F A+ + I + V +DN+ PKT WI ++DS++N PFY+N TKE+ W++P EY Y+ +Y+ YL+ Sbjct: 9 VENFFAEVDAITFNGVKEQDNA--PKTNWIVQVDSKSNLPFYYNFVTKETTWNIPDEYQSYLDEYKTYLQ 76
BLAST of WW domain-containing protein vs. TrEMBL
Match: W6UIK4 (WW domain-containing protein OS=Echinococcus granulosus OX=6210 GN=EGR_04154 PE=4 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.912e-9 Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 3 Query: 84 VKEFLADAECIAHSSVFSEDNSCEPKTEWIEEIDSRTNFPFYWNSNTKESVWDMPKEYNDYMIKYEAYLR 293 V+ F A+ + I + V +DN+ PKT WI ++DS++N PFY+N TKE+ W++P EY Y+ +Y+ YL+ Sbjct: 9 VENFFAEVDAITFNGVKEQDNA--PKTNWIVQVDSKSNLPFYYNFVTKETTWNIPDEYQSYLDEYKTYLQ 76
BLAST of WW domain-containing protein vs. TrEMBL
Match: A0A068WTD7 (WW Rsp5 WWP OS=Echinococcus granulosus OX=6210 GN=EgrG_000124600 PE=4 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 5.302e-9 Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 3 Query: 84 VKEFLADAECIAHSSVFSEDNSCEPKTEWIEEIDSRTNFPFYWNSNTKESVWDMPKEYNDYMIKYEAYLR 293 V+ F A+ + I + V +DN+ PKT WI ++DS++N PFY+N TKE+ W++P EY Y+ +Y+ YL+ Sbjct: 9 VENFFAEVDAITFNGVKEQDNA--PKTNWIVQVDSKSNLPFYYNFVTKETTWNIPDEYQSYLDEYKTYLQ 76
BLAST of WW domain-containing protein vs. TrEMBL
Match: A0A564YP21 (WW domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS7735 PE=4 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 2.208e-8 Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 84 VKEFLADAECIAHSSVFSEDNSCEPKTEWIEEIDSRTNFPFYWNSNTKESVWDMPKEYNDYMIKYEAYLRDLIVKCKESQQL 329 ++ F A+ E + S N PKT WI ++D +TN P+Y N TKE+ W++P+EY DY+ KYE YL++ + Q++ Sbjct: 10 IETFFAEVEAMKSSHNV---NDNVPKTNWIVQVDPKTNIPYYCNYVTKETTWNIPEEYQDYLTKYEHYLKEQYEGTTKPQEI 88
BLAST of WW domain-containing protein vs. TrEMBL
Match: A0A564YM03 (WW domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS7735 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.431e-8 Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 84 VKEFLADAECIAHSSVFSEDNSCEPKTEWIEEIDSRTNFPFYWNSNTKESVWDMPKEYNDYMIKYEAYLRDLIVKCKESQQL 329 ++ F A+ E + S N PKT WI ++D +TN P+Y N TKE+ W++P+EY DY+ KYE YL++ + Q++ Sbjct: 10 IETFFAEVEAMKSSHNV---NDNVPKTNWIVQVDPKTNIPYYCNYVTKETTWNIPEEYQDYLTKYEHYLKEQYEGTTKPQEI 88
BLAST of WW domain-containing protein vs. Ensembl Cavefish
Match: fnbp4 (formin binding protein 4 [Source:NCBI gene;Acc:103040741]) HSP 1 Score: 52.7582 bits (125), Expect = 5.435e-7 Identity = 32/105 (30.48%), Postives = 54/105 (51.43%), Query Frame = 3 Query: 519 KDQWMTEQVDEAEKYLKSTIKKMSETLKNKIEVLIHDGFGNDNLKDISIQIKTRLEDWSEGYLSLNRKVDKLRESLIEISRFEASLETDKWRLQWNSDKNQYFCV 833 KD+ + + +E LK I +++ TL +K+E L D N + + +Q +TR+ DW EG L+ N +L+E+ I +E + W W+ D +YF V Sbjct: 442 KDKSLPKTQEEETPDLKFQIGELANTLTSKMEFLGIDKKAISNFQLLLLQTETRIADWREGALNGNYLRRRLQEAAEHIKHYELNATPKGWSCHWDRDHRRYFYV 546 The following BLAST results are available for this feature:
BLAST of WW domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of WW domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of WW domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of WW domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of WW domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of WW domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of WW domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of WW domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of WW domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of WW domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of WW domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of WW domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of WW domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of WW domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 0
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30018971 ID=SMED30018971|Name=WW domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1212bpback to top protein sequence of SMED30018971-orf-1 >SMED30018971-orf-1 ID=SMED30018971-orf-1|Name=SMED30018971-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=350bp MELFVKEFLADAECIAHSSVFSEDNSCEPKTEWIEEIDSRTNFPFYWNSNback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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