50S ribosomal protein L7/L12
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30018954 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Human
Match: MRPL12 (mitochondrial ribosomal protein L12 [Source:HGNC Symbol;Acc:HGNC:10378]) HSP 1 Score: 95.1301 bits (235), Expect = 3.721e-24 Identity = 67/175 (38.29%), Postives = 92/175 (52.57%), Query Frame = 1 Query: 37 IRSLLSQSQQLCKVTLLKRFCSSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMM-MGGXXXXXXXXXXXX---------XXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 +R + S Q C+ L D++ K YPP I +V I+SLTLLE++DLN LLK L IQ ++ MGG + + ++T F V+L + KV LIKEIKN +NLVQAKK VE P +K V++ EA+KIK A E+VGG + +E Sbjct: 34 VRHMRSSGHQRCEA----------LAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 198
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Human
Match: AC139530.2 (novel protein) HSP 1 Score: 87.4261 bits (215), Expect = 6.269e-20 Identity = 63/167 (37.72%), Postives = 86/167 (51.50%), Query Frame = 1 Query: 37 IRSLLSQSQQLCKVTLLKRFCSSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMM-MGGXXXXXXXXXXXX---------XXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACES 507 +R + S Q C+ L D++ K YPP I +V I+SLTLLE++DLN LLK L IQ ++ MGG + + ++T F V+L + KV LIKEIKN +NLVQAKK VE P +K V++ EA+KIK A E+ Sbjct: 34 VRHMRSSGHQRCEA----------LAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEA 190
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Celegans
Match: mrpl-12 (Mitochondrial Ribosomal Protein, Large [Source:UniProtKB/TrEMBL;Acc:O18180]) HSP 1 Score: 92.0485 bits (227), Expect = 9.656e-24 Identity = 55/127 (43.31%), Postives = 80/127 (62.99%), Query Frame = 1 Query: 157 IVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMMGGXXXXXXXXXXXXXX---XXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEI 528 + +V++I++L+LL+V+DLN LK +LNI +M + E +K F VKL KFD TKK+ +IKEI+N P +NLVQAKK+VE APV +K+++ + EAD++K E G IEI Sbjct: 46 VSSLVEEIANLSLLDVSDLNWALKKRLNIPDQPLMAAAAAAPAAQAEAEAASDVPQKMTFTVKLTKFDDTKKIAIIKEIRNAIPGLNLVQAKKFVETAPVNVKEDLGKAEADELKAILEKAGATIEI 172
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Fly
Match: mRpL12 (gene:FBgn0011787 transcript:FBtr0076511) HSP 1 Score: 100.523 bits (249), Expect = 1.002e-26 Identity = 64/151 (42.38%), Postives = 93/151 (61.59%), Query Frame = 1 Query: 97 CSSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQM------MMGGXXXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 L+PP + ++K P + IV+ I++L LLEVA+L++LLK KLN+ + + +EE +T F VKLVKFD +KV LIKE+KN+ MNLVQAKK+VE AP ++K+++ +EEA+K+K A G +IEIE Sbjct: 33 AEKLVPPAP-EGAAKPPNPKLDSIVNNIAALNLLEVAELSTLLKQKLNLPETAFAPQFAAGPARAAPAEDEEEAAPKKVQTSFKVKLVKFDEKQKVALIKEVKNLLEGMNLVQAKKFVESAPTIVKEDIPKEEAEKLKEALSKAGAIIEIE 182
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Zebrafish
Match: mrpl12 (mitochondrial ribosomal protein L12 [Source:ZFIN;Acc:ZDB-GENE-050417-187]) HSP 1 Score: 98.5969 bits (244), Expect = 9.510e-26 Identity = 62/143 (43.36%), Postives = 84/143 (58.74%), Query Frame = 1 Query: 127 DDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMMGGXXXXXXXXXXXX--------XXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 D + K Y P I +V+ I+SLTL+EV+DLN LLK LNIQ MM G + E +KT F +KL +F A KV LIKE+KN +NLVQAKK VE P ++ +S++EA+K+K A E+ GG + +E Sbjct: 52 DGTPKEYSPKIQQLVNDIASLTLIEVSDLNELLKKTLNIQDVGMMSMGSMAAVPVAPPAEAEEEVAPAKKEKTHFTIKLTEFKAADKVKLIKEVKNCMEGINLVQAKKLVESLPQEIRTNISKDEAEKLKSALEAAGGTVVLE 194
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Zebrafish
Match: mrpl12 (mitochondrial ribosomal protein L12 [Source:ZFIN;Acc:ZDB-GENE-050417-187]) HSP 1 Score: 97.0561 bits (240), Expect = 4.344e-25 Identity = 63/148 (42.57%), Postives = 86/148 (58.11%), Query Frame = 1 Query: 127 DDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMMGGXXXX-------------XXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 D + K Y P I +V+ I+SLTL+EV+DLN LLK LNIQ MM G + +E P +KT F +KL +F A KV LIKE+KN +NLVQAKK VE P ++ +S++EA+K+K A E+ GG + +E Sbjct: 52 DGTPKEYSPKIQQLVNDIASLTLIEVSDLNELLKKTLNIQDVGMMSMGSMAAVPVAPPAELTEGLAEEEVAPAKKEKTHFTIKLTEFKAADKVKLIKEVKNCMEGINLVQAKKLVESLPQEIRTNISKDEAEKLKSALEAAGGTVVLE 199
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Xenopus
Match: mrpl12 (mitochondrial ribosomal protein L12 [Source:NCBI gene;Acc:448724]) HSP 1 Score: 108.612 bits (270), Expect = 1.550e-29 Identity = 71/179 (39.66%), Postives = 102/179 (56.98%), Query Frame = 1 Query: 22 SIASMIRSLLSQSQQLCKVTLLKRFCSSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMM-MGGXXXXXXXXXXXXXXXX--------XWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 +++S +R + +L + T + LP + D++ K YPP I ++VD+I+SLTLLEV++ N LL+ L IQ MM MG + T + T F VKL + +AT KV LIKE+KN +NLVQAKK VE P +K VS++EA+KIK A E+ GG + +E Sbjct: 13 AVSSALRRFEISTVRLLRTT--SELKNQALPSPSLDNAPKEYPPKIHNLVDQIASLTLLEVSEFNELLRKTLKIQDVGMMPMGSMLSGATAAPSQAAEEAEAPGKKEKTHFTVKLTEVNATDKVKLIKEVKNCIQGLNLVQAKKLVEALPQEIKANVSKDEAEKIKAALEAAGGKVALE 189
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Mouse
Match: Mrpl12 (mitochondrial ribosomal protein L12 [Source:MGI Symbol;Acc:MGI:1926273]) HSP 1 Score: 94.3597 bits (233), Expect = 4.817e-24 Identity = 65/147 (44.22%), Postives = 87/147 (59.18%), Query Frame = 1 Query: 127 DDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMM-MGGX-----------XXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 D++ K YPP I +V I+SLTLLE++DLN LLK L IQ +M MGG +E+ P+ ++T F V+L + KV LIKEIKN +NLVQAKK VE P +K V++ EA+KIK A E+VGG + +E Sbjct: 55 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGPVSAAAPASEAAEEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 201
BLAST of 50S ribosomal protein L7/L12 vs. UniProt/SwissProt
Match: sp|Q7YR75|RM12_BOVIN (39S ribosomal protein L12, mitochondrial OS=Bos taurus OX=9913 GN=MRPL12 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.569e-26 Identity = 74/183 (40.44%), Postives = 100/183 (54.64%), Query Frame = 1 Query: 28 ASMIRSLLSQSQQLCKVTLLKRFCSS-----LLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMM-MGGXXXXXXXXXXX---------XXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 A+ +R + Q +C V L++ CSS L D++ K YPP I +V I+SLTLLE++DLN LLK L IQ +M MGG V + ++T F V+L + KV LIKEIKN +NLVQAKK VE P +K V++ EA+KIK A E+VGG + +E Sbjct: 18 AAALRLVRQQVPHVCAVRLMR--CSSHRRGEALTGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 198
BLAST of 50S ribosomal protein L7/L12 vs. UniProt/SwissProt
Match: sp|P52815|RM12_HUMAN (39S ribosomal protein L12, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL12 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 1.787e-23 Identity = 67/175 (38.29%), Postives = 92/175 (52.57%), Query Frame = 1 Query: 37 IRSLLSQSQQLCKVTLLKRFCSSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMM-MGGXXXXXXXXXXXX---------XXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 +R + S Q C+ L D++ K YPP I +V I+SLTLLE++DLN LLK L IQ ++ MGG + + ++T F V+L + KV LIKEIKN +NLVQAKK VE P +K V++ EA+KIK A E+VGG + +E Sbjct: 34 VRHMRSSGHQRCEA----------LAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 198
BLAST of 50S ribosomal protein L7/L12 vs. UniProt/SwissProt
Match: sp|Q9DB15|RM12_MOUSE (39S ribosomal protein L12, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl12 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 3.369e-23 Identity = 65/147 (44.22%), Postives = 87/147 (59.18%), Query Frame = 1 Query: 127 DDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMM-MGGX-----------XXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 D++ K YPP I +V I+SLTLLE++DLN LLK L IQ +M MGG +E+ P+ ++T F V+L + KV LIKEIKN +NLVQAKK VE P +K V++ EA+KIK A E+VGG + +E Sbjct: 55 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGPVSAAAPASEAAEEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 201
BLAST of 50S ribosomal protein L7/L12 vs. UniProt/SwissProt
Match: sp|P52827|RM12_CRICR (39S ribosomal protein L12, mitochondrial OS=Cricetus cricetus OX=10034 GN=MRPL12 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.271e-23 Identity = 63/148 (42.57%), Postives = 84/148 (56.76%), Query Frame = 1 Query: 127 DDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMM-MGGXXXXXXXXXXX------------XXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 D++ K YPP I +V I+SLTLLE++DLN LLK L IQ +M MGG + + ++T F V+L + KV LIKEIKN +NLVQAKK VE P +K V++ EA+KIK A E+VGG + +E Sbjct: 56 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMMPGAVPAAAAAAPEVAEGEDILKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 203
BLAST of 50S ribosomal protein L7/L12 vs. UniProt/SwissProt
Match: sp|Q9USJ9|MNP1_SCHPO (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl12 PE=3 SV=2) HSP 1 Score: 63.929 bits (154), Expect = 6.783e-12 Identity = 57/166 (34.34%), Postives = 91/166 (54.82%), Query Frame = 1 Query: 34 MIRSLLSQSQQLCKVTLLKRFCSSLLPPTTTDDSSKLYP--PHIVDIVDKISSLTLLEVADLNSLLKSKLNI-------QASQMMMGGXXXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACE 504 M R Q++ L ++ K + SL+ + ++ + I ++VDKISSL+LLE ++L LK KLNI + + ++ EE + K TW ++KL FDA K +IKE+K++ ++LV AKK+VE AP VLK+ + +E+A+ IK E Sbjct: 1 MFRIASRQTRNLRALSSSKNWARSLVNTRSFRAAASVQNNNAQIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAPEEKKEEKTTW-NLKLESFDAGSKAKVIKEVKSLLG-LSLVDAKKFVESAPKVLKENILKEDAEAIKSKLE 164
BLAST of 50S ribosomal protein L7/L12 vs. TrEMBL
Match: A0A0R3TJZ3 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS7436 PE=4 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.351e-37 Identity = 84/161 (52.17%), Postives = 109/161 (67.70%), Query Frame = 1 Query: 70 CKVTLLKRFCSSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMMG-------GXXXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 C T R +L PT + + K YP +IV IVD+I++LT+LEVADLN LL +KLNI+A MG ++ EE + KT + VKL+KFD KKVPLIKEIKN+ P+MNLVQAKK+VE AP VLKK++S+EEADKIK + ES G ++E+E Sbjct: 30 CYSTATPRVSENLNGPTL-EAAEKKYPQNIVRIVDQIAALTILEVADLNELLSNKLNIKAPTYSMGFMPPQQASGTKKEEAEEAEQAPTKTSYAVKLMKFDEAKKVPLIKEIKNILPDMNLVQAKKFVEAAPGVLKKDLSKEEADKIKKSLESCGALVELE 189
BLAST of 50S ribosomal protein L7/L12 vs. TrEMBL
Match: A0A0R3SMI1 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS6144 PE=4 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.700e-34 Identity = 82/171 (47.95%), Postives = 106/171 (61.99%), Query Frame = 1 Query: 40 RSLLSQSQQLCKVTLLKRFCSSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMMG-------GXXXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 + L+ +S C T + L P + K YP IV IVD+I++LTLLEVADLN LL KLNI A MG P ++ +E + K+ + VKL+KFDA KKV LIKEIKN+ P+MNLVQAKK+VE AP +LKK++S+EEAD IK A E G +E+E Sbjct: 20 KRLIQRSVFSCYSTAASQIAEYLKAPAL-EGVEKEYPERIVKIVDQIAALTLLEVADLNELLSKKLNIHAPTHSMGFMPVQETAPAKKEEADEAEQAPVKSSYAVKLMKFDAVKKVQLIKEIKNILPDMNLVQAKKFVEAAPGILKKDLSKEEADDIKKALEVCGASVELE 189
BLAST of 50S ribosomal protein L7/L12 vs. TrEMBL
Match: A0A183N289 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS22414 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.905e-34 Identity = 79/147 (53.74%), Postives = 101/147 (68.71%), Query Frame = 1 Query: 106 LLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMM-----GGXXXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 L+PP+ + D+ K YP HI +IV++ISSLTLLEVADL+ LL+ KLNI+ + MM + EE + KT F VKLVKFDA KK+ LIKEIK + PEMNLVQAKK+VE AP +K +VS++EA++IK E VG I IE Sbjct: 36 LVPPSFSADN-KEYPKHIHEIVNRISSLTLLEVADLSELLQKKLNIKNAGPMMPMMVQAPTNQPPEELEEQQAPTKTAFSVKLVKFDAAKKIQLIKEIKQVIPEMNLVQAKKFVESAPANIKTDVSKDEAEQIKKVLEEVGASIAIE 181
BLAST of 50S ribosomal protein L7/L12 vs. TrEMBL
Match: A0A183P9K0 (Uncharacterized protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS11036 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 6.571e-34 Identity = 80/147 (54.42%), Postives = 102/147 (69.39%), Query Frame = 1 Query: 106 LLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMM-----GGXXXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 L+PP+ + D+ K YP HI +IV++ISSLTLLEVADL+ LL+ KLNI+ + MM + EE +V KT F VKLVKFDA KK+ LIKEIK + PEMNLVQAKK+VE AP +K +VS++EA++IK E VG I IE Sbjct: 11 LVPPSFSADN-KEYPKHIHEIVNRISSLTLLEVADLSELLQKKLNIKNTGPMMPMMVQAPTNQPPEEPEEQQVPTKTAFSVKLVKFDAAKKIQLIKEIKQVIPEMNLVQAKKFVESAPANIKTDVSKDEAEQIKKVLEEVGASIAIE 156
BLAST of 50S ribosomal protein L7/L12 vs. TrEMBL
Match: A0A1Z5KY28 (Uncharacterized protein (Fragment) OS=Ornithodoros moubata OX=6938 PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.572e-34 Identity = 79/178 (44.38%), Postives = 110/178 (61.80%), Query Frame = 1 Query: 25 IASMIRSLLSQSQQL--CKVTLLKRFCSSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMMGG-------XXXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 +++ R L + +L C V L+ + + +L + K YP I+ IVD+IS LTLLEVADLN LLK LNIQ + MM GG ++ +E +T F VKL+KFD +KK+ LIKE+KN+ +NLVQAKK+VE AP V+K ++ ++EADK+K A E+ GG EIE Sbjct: 15 VSTTARCLRNAQNRLPVCAVHRLQ-YSTQILAQPLAEAEEKRYPEKIMRIVDEISKLTLLEVADLNDLLKKTLNIQETPMMAGGWAPPAAAAAKEEEEEGTTVAKVQTAFTVKLIKFDESKKIQLIKELKNLMEGINLVQAKKFVESAPQVVKADLPKDEADKLKAAIEAAGGTCEIE 191
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Cavefish
Match: mrpl12 (mitochondrial ribosomal protein L12 [Source:NCBI gene;Acc:103027098]) HSP 1 Score: 93.5893 bits (231), Expect = 5.862e-24 Identity = 66/150 (44.00%), Postives = 85/150 (56.67%), Query Frame = 1 Query: 112 PPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQ----------ASQMMMGGXXXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 PP D + K Y P I +V+ ISSL+LLEV+DLN LLK LNIQ A+ +E P +KT F VKL + A KV LIKE+KN +NLVQAKK VE P ++ VS+EEA+K+K A E+ GG + +E Sbjct: 48 PPL--DGAPKQYSPKIQQLVNDISSLSLLEVSDLNELLKKTLNIQDVGMMSMGAMAAAPSAAVAAPAADEEPAPAKKEKTHFTVKLTELKAADKVKLIKEVKNCIQGLNLVQAKKLVESLPQEIRANVSKEEAEKLKTALEAAGGTVVLE 195
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Sea Lamprey
Match: mrpl12 (mitochondrial ribosomal protein L12 [Source:ZFIN;Acc:ZDB-GENE-050417-187]) HSP 1 Score: 77.7962 bits (190), Expect = 1.826e-18 Identity = 61/149 (40.94%), Postives = 80/149 (53.69%), Query Frame = 1 Query: 91 RFCSSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMMGGXXXXXXXXXXXX-----XXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACES-VGGV 519 R +L P D K + P + +V I+SL+LLEVADLN LLK L+IQ M E E +KT F V+L + + KV LIKE+K P +NLVQAKK VE P +K V +EEA+++K A E+ GGV Sbjct: 30 RPADALAAPPLDADPHK-FSPKVQQLVSDITSLSLLEVADLNKLLKKTLDIQDVGFMPMAAATSAAAPAEAEEDAPVKKEKTHFVVRLTEVRGSDKVKLIKEVKACIPGLNLVQAKKLVESLPQEIKANVPKEEANQLKAALEAGTGGV 177
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Yeast
Match: MNP1 (Mitochondrial ribosomal protein of the large subunit; has similarity to E. coli L7/L12 and human MRPL7 ribosomal proteins; associates with the mitochondrial nucleoid; required for normal respiratory growth [Source:SGD;Acc:S000003036]) HSP 1 Score: 62.3882 bits (150), Expect = 5.298e-13 Identity = 55/144 (38.19%), Postives = 75/144 (52.08%), Query Frame = 1 Query: 151 PHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMM-----------------GGXXXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 P I IV IS LTLLE + L + LK+ LNI M M EEE + KT F VKL FD K +IKE+K + ++LV+AKK+VE AP VLK+ V++++A+KIK E +G + +E Sbjct: 52 PKISKIVQDISQLTLLETSSLINELKTVLNIPEISMPMGGFMAGAAGAGAGNVPSSTGEAGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLL-GLSLVEAKKFVEAAPKVLKENVAKDDAEKIKKTLEDLGAKVSLE 194
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Nematostella
Match: EDO35026 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SMP9]) HSP 1 Score: 115.546 bits (288), Expect = 2.144e-33 Identity = 76/149 (51.01%), Postives = 96/149 (64.43%), Query Frame = 1 Query: 100 SSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQ-----ASQMMMGGXXXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 SSL P DDS + YP HI IVD IS LTLLEV++LN LLK L IQ A+ M Q EE + + T F VKL FDA KV LIKEIKN+ P MNLVQAKK+VEG P ++++V++EE++++K A E+ GG +EIE Sbjct: 2 SSLAAPDA-DDSQRHYPNHIKKIVDDISKLTLLEVSELNELLKVTLKIQDVPMMAAGAMSAPAAAQAASEEPEKEAEPTEFTVKLTGFDAAAKVKLIKEIKNLIPGMNLVQAKKFVEGLPQNVREKVNKEESEQLKKALEAAGGTVEIE 149
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Medaka
Match: mrpl12 (mitochondrial ribosomal protein L12 [Source:NCBI gene;Acc:101164893]) HSP 1 Score: 109.383 bits (272), Expect = 5.030e-30 Identity = 75/175 (42.86%), Postives = 95/175 (54.29%), Query Frame = 1 Query: 40 RSLLSQSQQLCKVTLLKRFCSS---LLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMM-MGGXXXXXXXXXXXX-------XXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 + L Q LC + LLK C S PP D + K Y P + +V+ I+SLTLLEV+DLN LLK LNIQ MM MG +KT F VKL + A KV LIKE+KN +NLVQAKK VE P ++ VS+EEA+K+K A E+ GG + +E Sbjct: 23 QQLQHQVPSLCALRLLKTSCHSETIATPPL--DGAPKQYSPKVQQLVNDIASLTLLEVSDLNELLKKTLNIQDVGMMPMGAMAASAMPATPAADEEEAPAKKEKTHFTVKLTELKAADKVKLIKEVKNCIQGLNLVQAKKLVESLPQEIRANVSKEEAEKLKAALEAAGGTVVLE 195
BLAST of 50S ribosomal protein L7/L12 vs. Planmine SMEST
Match: SMESG000026245.1 (SMESG000026245.1) HSP 1 Score: 293.508 bits (750), Expect = 4.125e-103 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1 Query: 34 MIRSLLSQSQQLCKVTLLKRFCSSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMMGGXXXXXXXXXXXXXXXXXWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 531 MIRSLLSQSQQLCKVTLLKRFCSSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMMGGPVVQQTKEEEPEVVKKTWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE Sbjct: 1 MIRSLLSQSQQLCKVTLLKRFCSSLLPPTTTDDSSKLYPPHIVDIVDKISSLTLLEVADLNSLLKSKLNIQASQMMMGGPVVQQTKEEEPEVVKKTWFDVKLVKFDATKKVPLIKEIKNMFPEMNLVQAKKYVEGAPVVLKKEVSQEEADKIKIACESVGGVIEIE 166 The following BLAST results are available for this feature:
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of 50S ribosomal protein L7/L12 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of 50S ribosomal protein L7/L12 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of 50S ribosomal protein L7/L12 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of 50S ribosomal protein L7/L12 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30018954 ID=SMED30018954|Name=50S ribosomal protein L7/L12|organism=Schmidtea mediterranea sexual|type=transcript|length=539bpback to top protein sequence of SMED30018954-orf-1 >SMED30018954-orf-1 ID=SMED30018954-orf-1|Name=SMED30018954-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=167bp MIRSLLSQSQQLCKVTLLKRFCSSLLPPTTTDDSSKLYPPHIVDIVDKISback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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