SMED30018953

Overview


Name	SMED30018953
Smed ID	SMED30018953
Length (bp)	5027

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30018953 (SMED30018953) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30018953 (SMED30018953) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30018953 (SMED30018953) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30018953 (SMED30018953) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30018953

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30018953	h1SMcG0007275	SmedASXL_017936	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
gut	SMED30018953	h1SMcG0007275	dd_Smed_v4_6172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30018953	h1SMcG0007275	dd_Smed_v4_6172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30018953	h1SMcG0007275	dd_Smed_v4_6172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30018953	h1SMcG0007275	dd_Smed_v4_6172_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30018953 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.002710:20154..29766 -	24972

Homology

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BLAST of SMED30018953 vs. Ensembl Human
Match: ZNF532 (zinc finger protein 532 [Source:HGNC Symbol;Acc:HGNC:30940])

HSP 1 Score: 56.9954 bits (136), Expect = 3.656e-7
Identity = 56/229 (24.45%), Postives = 92/229 (40.17%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFS---PQSCLICQEIMNNEFELDIHTIEH------------QKECQTAELEPTQFACPKCCRLFFGRDGK-SYLKDHYNIIHLSKPLPNCEECDTKFSST 4105
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + HI+N  ++V            F+CP C L +  +  +  HI S H T                K I   PN     P S     +   N+ + D  ++              +K  +T ++    + C +C  LF  RD   S+++  +       P   C +CD  FSS+
Sbjct:  870 YKCPICPMAFKSAPSTHSHAYTQHPGIKIGEPKIIYKCSMCDTVFTLQTLLYRHFDQ-HIENQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT---------------LKSIEGPPNLGINLPLSIKPATQNSANQNKEDTKSMNGKEKLEKKSPSPVKKSMETKKVASPGWTCWECDCLFMQRDVYISHVRKEHGKQMKKHP---CRQCDKSFSSS 1067

[Close]

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFS---PQSCLICQEIMNNEFELDIHTIEH------------QKECQTAELEPTQFACPKCCRLFFGRDGK-SYLKDHYNIIHLSKPLPNCEECDTKFSST 4105
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + HI+N  ++V            F+CP C L +  +  +  HI S H T                K I   PN     P S     +   N+ + D  ++              +K  +T ++    + C +C  LF  RD   S+++  +       P   C +CD  FSS+
Sbjct:  870 YKCPICPMAFKSAPSTHSHAYTQHPGIKIGEPKIIYKCSMCDTVFTLQTLLYRHFDQ-HIENQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT---------------LKSIEGPPNLGINLPLSIKPATQNSANQNKEDTKSMNGKEKLEKKSPSPVKKSMETKKVASPGWTCWECDCLFMQRDVYISHVRKEHGKQMKKHP---CRQCDKSFSSS 1067

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Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFS---PQSCLICQEIMNNEFELDIHTIEH------------QKECQTAELEPTQFACPKCCRLFFGRDGK-SYLKDHYNIIHLSKPLPNCEECDTKFSST 4105
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + HI+N  ++V            F+CP C L +  +  +  HI S H T                K I   PN     P S     +   N+ + D  ++              +K  +T ++    + C +C  LF  RD   S+++  +       P   C +CD  FSS+
Sbjct:  870 YKCPICPMAFKSAPSTHSHAYTQHPGIKIGEPKIIYKCSMCDTVFTLQTLLYRHFDQ-HIENQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT---------------LKSIEGPPNLGINLPLSIKPATQNSANQNKEDTKSMNGKEKLEKKSPSPVKKSMETKKVASPGWTCWECDCLFMQRDVYISHVRKEHGKQMKKHP---CRQCDKSFSSS 1067

[Close]

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFS---PQSCLICQEIMNNEFELDIHTIEH------------QKECQTAELEPTQFACPKCCRLFFGRDGK-SYLKDHYNIIHLSKPLPNCEECDTKFSST 4105
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + HI+N  ++V            F+CP C L +  +  +  HI S H T                K I   PN     P S     +   N+ + D  ++              +K  +T ++    + C +C  LF  RD   S+++  +       P   C +CD  FSS+
Sbjct:  870 YKCPICPMAFKSAPSTHSHAYTQHPGIKIGEPKIIYKCSMCDTVFTLQTLLYRHFDQ-HIENQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT---------------LKSIEGPPNLGINLPLSIKPATQNSANQNKEDTKSMNGKEKLEKKSPSPVKKSMETKKVASPGWTCWECDCLFMQRDVYISHVRKEHGKQMKKHP---CRQCDKSFSSS 1067

[Close]

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFS---PQSCLICQEIMNNEFELDIHTIEH------------QKECQTAELEPTQFACPKCCRLFFGRDGK-SYLKDHYNIIHLSKPLPNCEECDTKFSST 4105
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + HI+N  ++V            F+CP C L +  +  +  HI S H T                K I   PN     P S     +   N+ + D  ++              +K  +T ++    + C +C  LF  RD   S+++  +       P   C +CD  FSS+
Sbjct:  870 YKCPICPMAFKSAPSTHSHAYTQHPGIKIGEPKIIYKCSMCDTVFTLQTLLYRHFDQ-HIENQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT---------------LKSIEGPPNLGINLPLSIKPATQNSANQNKEDTKSMNGKEKLEKKSPSPVKKSMETKKVASPGWTCWECDCLFMQRDVYISHVRKEHGKQMKKHP---CRQCDKSFSSS 1067

[Close]

BLAST of SMED30018953 vs. Ensembl Zebrafish
Match: si:dkey-30k6.5 (si:dkey-30k6.5 [Source:ZFIN;Acc:ZDB-GENE-091204-299])

HSP 1 Score: 56.6102 bits (135), Expect = 2.719e-7
Identity = 64/262 (24.43%), Postives = 95/262 (36.26%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHI---TSGHRTDTDSTTQSGHHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTVCYSMHRKSVKNCSKKTPDQLKIEDPYEKLNDPMKLAFVCSRCQTLVAGQSA 4261
            ++C VC  +FK  +    H T  H G K +CC++C   ++    L+ H QK HI+                + F C  C  +F+ R  L  H+   T   R   D   +       L +  A         C IC +     + L +HT +H         +P  F C  C + F   D   Y+K H  IIH  +    C  C+  F      + H                 E  +E+L  P+   F C  CQ     Q+A
Sbjct:  440 YNCPVCDKQFKIKQNMLDHQTL-HTGEKPYCCEICGEFYSCERYLKNH-QKSHIEKT--------------YEFSCEICEKRFSARKHLQAHMLVHTREKRYTCDVCDKKFATSGNLNRHKAGHTGVKLYGCPICLKRYTTAYALKMHTHKHTSS------KP--FLCDVCGKGFTSSD---YMKRHKRIIHAGRRDCVCSICNKAFIFPSSLNQHMLVHTG-----------EKHHERLISPLLKKFACDHCQKKFYSQAA 663

[Close]

BLAST of SMED30018953 vs. Ensembl Zebrafish
Match: znf740a (zinc finger protein 740a [Source:ZFIN;Acc:ZDB-GENE-030131-5064])

HSP 1 Score: 54.6842 bits (130), Expect = 6.373e-7
Identity = 59/232 (25.43%), Postives = 86/232 (37.07%), Query Frame = 2

Query: 3434 VIDNSTKSSISPLKSENFSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTVCYSMHRK 4129
            V+D +    +S ++ +NF C+ C   F+S      H    H G K F C VCD+ F          Q+YH++  SL   G +        + C  C ++F  R  L  H          S T +G                 P +C +C       + L+ H++ H  E          FAC  C   F  R    +L+ H  +    KP   CE C   FS T     HR+
Sbjct:  130 VVDENGNCPLSKVQ-KNFICDHCYGAFRSGYHLKRHILI-HTGEKPFACAVCDMRFI---------QRYHLERHSLTHTGVK-------PYACSMCDMRFFQRYHLQRH----------SLTHTG---------------VKPYACSMCDMRFFQRYHLERHSLTHTGE--------KPFACDMCDMRFIQR---YHLERHKRVHSGEKPY-QCERCQQNFSRTDRLLRHRR 306

[Close]

BLAST of SMED30018953 vs. Ensembl Zebrafish
Match: si:dkey-30k6.5 (si:dkey-30k6.5 [Source:ZFIN;Acc:ZDB-GENE-091204-299])

HSP 1 Score: 54.299 bits (129), Expect = 1.473e-6
Identity = 64/262 (24.43%), Postives = 95/262 (36.26%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHI---TSGHRTDTDSTTQSGHHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTVCYSMHRKSVKNCSKKTPDQLKIEDPYEKLNDPMKLAFVCSRCQTLVAGQSA 4261
            ++C VC  +FK  +    H T  H G K +CC++C   ++    L+ H QK HI+                + F C  C  +F+ R  L  H+   T   R   D   +       L +  A         C IC +     + L +HT +H         +P  F C  C + F   D   Y+K H  IIH  +    C  C+  F      + H                 E  +E+L  P+   F C  CQ     Q+A
Sbjct:  310 YNCPVCDKQFKIKQNMLDHQTL-HTGEKPYCCEICGEFYSCERYLKNH-QKSHIEKT--------------YEFSCEICEKRFSARKHLQAHMLVHTREKRYTCDVCDKKFATSGNLNRHKAGHTGVKLYGCPICLKRYTTAYALKMHTHKHTSS------KP--FLCDVCGKGFTSSD---YMKRHKRIIHAGRRDCVCSICNKAFIFPSSLNQHMLVHTG-----------EKHHERLISPLLKKFACDHCQKKFYSQAA 533

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BLAST of SMED30018953 vs. Ensembl Zebrafish
Match: zgc:193790 (zgc:193790 [Source:ZFIN;Acc:ZDB-GENE-080723-55])

HSP 1 Score: 51.9878 bits (123), Expect = 4.071e-6
Identity = 63/235 (26.81%), Postives = 92/235 (39.15%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTT----HILLRKHAQKYHIDNVSLAVFGKENASEIDFS--------FQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDD--FLAKL-----IAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTVCYSMHRKS 4132
            F+C+ C   +K     +SH  + H G +LF C  C  SFTT    H+ +R H  +   +        K NA  I           F C  C   FT +  L HH+    R+ TD    S  H D  FL K      +       P +C +C        +L +H + H  E      +P +  C  C + F      S LK H  I    KP   C +C+  + ++    +H+KS
Sbjct:   71 FNCSDCGRNYKYKSDLNSHMRT-HTGERLFTCTKCGKSFTTSGKLHVHMRVHTGEKPFECSQCGQAYKNNADLITHRRVHTGMKPFNCKHCRKSFTSKGALRHHL----RSHTDKKPFSCSHCDKTFLTKALLKRHLVVHTAAKPHACSVCGNTFLYLQKLKVHELIHTGE------KPHK--CSDCGKSF---RTSSNLKIHQRIHTGEKP-HQCSDCEKSYPTSSALKVHQKS 288

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BLAST of SMED30018953 vs. Ensembl Xenopus
Match: ENSXETT00000047589.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV460383.1:418077:462439:-1 gene:ENSXETG00000020195.1 transcript:ENSXETT00000047589.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.5286 bits (127), Expect = 3.702e-6
Identity = 71/273 (26.01%), Postives = 104/273 (38.10%), Query Frame = 2

Query: 3479 ENFSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTD-STTQSGH----HDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTVCYSMHRK--------SVKNCSKKTPDQLKIEDPYEKLNDPMKLAFVCSRCQTLVAGQS 4258
            ++F C+ C+  + +L   + H    H G K F C  C   F T   L  H ++ H                 +  F C FC   F   S L  H    H  D   S +QSG       D +           P +C  C +  +    L I    HQ++  T E     FAC +C + F     KS LKDH  I H  +   +C EC   FS+      H +        S   C K    Q +++D +++++   K +F CS C    + QS
Sbjct:  337 KSFYCSECEKHYSTLSYLNFHQIRIHTGEKPFSCSECGKCFFTSSDLLGHQRRTHTG---------------ERPFSCYFCGKCFFTLSDLTLHRRRTHTEDKSFSCSQSGKCFFTSSDLIGHRQQIHTGEKPNTCSECGKCFSTSSNLTI----HQRQTHTGE---KPFACLQCGKCF---SYKSRLKDH-QITHTREKPFSCSECGKCFSNQSLLKTHHRTHTGEKPFSCPECGKCFSVQSRLKD-HQRIHTREK-SFSCSECGKCFSNQS 581

[Close]

BLAST of SMED30018953 vs. Ensembl Xenopus
Match: ENSXETT00000047580.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV460383.1:418077:462541:-1 gene:ENSXETG00000020195.1 transcript:ENSXETT00000047580.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.5286 bits (127), Expect = 3.702e-6
Identity = 71/273 (26.01%), Postives = 104/273 (38.10%), Query Frame = 2

Query: 3479 ENFSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTD-STTQSGH----HDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTVCYSMHRK--------SVKNCSKKTPDQLKIEDPYEKLNDPMKLAFVCSRCQTLVAGQS 4258
            ++F C+ C+  + +L   + H    H G K F C  C   F T   L  H ++ H                 +  F C FC   F   S L  H    H  D   S +QSG       D +           P +C  C +  +    L I    HQ++  T E     FAC +C + F     KS LKDH  I H  +   +C EC   FS+      H +        S   C K    Q +++D +++++   K +F CS C    + QS
Sbjct:  337 KSFYCSECEKHYSTLSYLNFHQIRIHTGEKPFSCSECGKCFFTSSDLLGHQRRTHTG---------------ERPFSCYFCGKCFFTLSDLTLHRRRTHTEDKSFSCSQSGKCFFTSSDLIGHRQQIHTGEKPNTCSECGKCFSTSSNLTI----HQRQTHTGE---KPFACLQCGKCF---SYKSRLKDH-QITHTREKPFSCSECGKCFSNQSLLKTHHRTHTGEKPFSCPECGKCFSVQSRLKD-HQRIHTREK-SFSCSECGKCFSNQS 581

[Close]

BLAST of SMED30018953 vs. Ensembl Xenopus
Match: oscp1 (organic solute carrier partner 1 [Source:Xenbase;Acc:XB-GENE-992936])

HSP 1 Score: 53.1434 bits (126), Expect = 5.874e-6
Identity = 31/105 (29.52%), Postives = 51/105 (48.57%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRT 3781
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + H++N  ++V            F+CP C L +  +  +  HI S H T
Sbjct:  909 YKCPICPMAFKSAPSTHSHAYTQHPGVKIGEPKIIYKCSMCDTVFTLQPLLHRHFDQ-HLENQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT 1000

[Close]

BLAST of SMED30018953 vs. Ensembl Xenopus
Match: oscp1 (organic solute carrier partner 1 [Source:Xenbase;Acc:XB-GENE-992936])

HSP 1 Score: 53.1434 bits (126), Expect = 5.907e-6
Identity = 31/105 (29.52%), Postives = 51/105 (48.57%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRT 3781
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + H++N  ++V            F+CP C L +  +  +  HI S H T
Sbjct:  889 YKCPICPMAFKSAPSTHSHAYTQHPGVKIGEPKIIYKCSMCDTVFTLQPLLHRHFDQ-HLENQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT 980

[Close]

BLAST of SMED30018953 vs. Ensembl Xenopus
Match: oscp1 (organic solute carrier partner 1 [Source:Xenbase;Acc:XB-GENE-992936])

HSP 1 Score: 52.7582 bits (125), Expect = 6.049e-6
Identity = 31/105 (29.52%), Postives = 51/105 (48.57%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRT 3781
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + H++N  ++V            F+CP C L +  +  +  HI S H T
Sbjct:  878 YKCPICPMAFKSAPSTHSHAYTQHPGVKIGEPKIIYKCSMCDTVFTLQPLLHRHFDQ-HLENQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT 969

[Close]

BLAST of SMED30018953 vs. Ensembl Mouse
Match: Zfp532 (zinc finger protein 532 [Source:MGI Symbol;Acc:MGI:3036282])

HSP 1 Score: 59.3066 bits (142), Expect = 5.225e-8
Identity = 56/229 (24.45%), Postives = 90/229 (39.30%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFS---PQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQ------------FACPKCCRLFFGRDGK-SYLKDHYNIIHLSKPLPNCEECDTKFSST 4105
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + H DN  ++V            F+CP C L +  +  +  HI S H T                K I   PN     P S     +   N    D  ++  +++ +     P +            + C +C RLF  RD   S+++  +       P   C +CD  FSS+
Sbjct:  867 YKCPICPMAFKSAPSTHSHAYTQHPGVKIGEPKIIYKCSMCDTVFTLQTLLYRHFDQ-HTDNQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT---------------LKSIEGPPNLGINLPLSVKPATQNSANHSREDAKSVNGKEKLEKKSPSPAKKSTEPKKMASLGWTCWECDRLFTQRDVYLSHMRKEHGKQMKKHP---CRQCDKSFSSS 1064

[Close]

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFS---PQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQ------------FACPKCCRLFFGRDGK-SYLKDHYNIIHLSKPLPNCEECDTKFSST 4105
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + H DN  ++V            F+CP C L +  +  +  HI S H T                K I   PN     P S     +   N    D  ++  +++ +     P +            + C +C RLF  RD   S+++  +       P   C +CD  FSS+
Sbjct:  867 YKCPICPMAFKSAPSTHSHAYTQHPGVKIGEPKIIYKCSMCDTVFTLQTLLYRHFDQ-HTDNQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT---------------LKSIEGPPNLGINLPLSVKPATQNSANHSREDAKSVNGKEKLEKKSPSPAKKSTEPKKMASLGWTCWECDRLFTQRDVYLSHMRKEHGKQMKKHP---CRQCDKSFSSS 1064

[Close]

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFS---PQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQ------------FACPKCCRLFFGRDGK-SYLKDHYNIIHLSKPLPNCEECDTKFSST 4105
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + H DN  ++V            F+CP C L +  +  +  HI S H T                K I   PN     P S     +   N    D  ++  +++ +     P +            + C +C RLF  RD   S+++  +       P   C +CD  FSS+
Sbjct:  867 YKCPICPMAFKSAPSTHSHAYTQHPGVKIGEPKIIYKCSMCDTVFTLQTLLYRHFDQ-HTDNQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT---------------LKSIEGPPNLGINLPLSVKPATQNSANHSREDAKSVNGKEKLEKKSPSPAKKSTEPKKMASLGWTCWECDRLFTQRDVYLSHMRKEHGKQMKKHP---CRQCDKSFSSS 1064

[Close]

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFS---PQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQ------------FACPKCCRLFFGRDGK-SYLKDHYNIIHLSKPLPNCEECDTKFSST 4105
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + H DN  ++V            F+CP C L +  +  +  HI S H T                K I   PN     P S     +   N    D  ++  +++ +     P +            + C +C RLF  RD   S+++  +       P   C +CD  FSS+
Sbjct:  867 YKCPICPMAFKSAPSTHSHAYTQHPGVKIGEPKIIYKCSMCDTVFTLQTLLYRHFDQ-HTDNQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT---------------LKSIEGPPNLGINLPLSVKPATQNSANHSREDAKSVNGKEKLEKKSPSPAKKSTEPKKMASLGWTCWECDRLFTQRDVYLSHMRKEHGKQMKKHP---CRQCDKSFSSS 1064

[Close]

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFS---PQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQ------------FACPKCCRLFFGRDGK-SYLKDHYNIIHLSKPLPNCEECDTKFSST 4105
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + H DN  ++V            F+CP C L +  +  +  HI S H T                K I   PN     P S     +   N    D  ++  +++ +     P +            + C +C RLF  RD   S+++  +       P   C +CD  FSS+
Sbjct:  867 YKCPICPMAFKSAPSTHSHAYTQHPGVKIGEPKIIYKCSMCDTVFTLQTLLYRHFDQ-HTDNQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT---------------LKSIEGPPNLGINLPLSVKPATQNSANHSREDAKSVNGKEKLEKKSPSPAKKSTEPKKMASLGWTCWECDRLFTQRDVYLSHMRKEHGKQMKKHP---CRQCDKSFSSS 1064

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BLAST of SMED30018953 vs. UniProt/SwissProt
Match: sp|Q9HCE3|ZN532_HUMAN (Zinc finger protein 532 OS=Homo sapiens OX=9606 GN=ZNF532 PE=1 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 1.755e-6
Identity = 56/229 (24.45%), Postives = 92/229 (40.17%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFS---PQSCLICQEIMNNEFELDIHTIEH------------QKECQTAELEPTQFACPKCCRLFFGRDGK-SYLKDHYNIIHLSKPLPNCEECDTKFSST 4105
            + C +C + FKS  +  SH  ++H G+K      ++ C +CD  FT   LL +H  + HI+N  ++V            F+CP C L +  +  +  HI S H T                K I   PN     P S     +   N+ + D  ++              +K  +T ++    + C +C  LF  RD   S+++  +       P   C +CD  FSS+
Sbjct:  870 YKCPICPMAFKSAPSTHSHAYTQHPGIKIGEPKIIYKCSMCDTVFTLQTLLYRHFDQ-HIENQKVSV------------FKCPDCSLLYAQKQLMMDHIKSMHGT---------------LKSIEGPPNLGINLPLSIKPATQNSANQNKEDTKSMNGKEKLEKKSPSPVKKSMETKKVASPGWTCWECDCLFMQRDVYISHVRKEHGKQMKKHP---CRQCDKSFSSS 1067

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BLAST of SMED30018953 vs. TrEMBL
Match: A0A183AK87 (C2H2-type domain-containing protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS7372 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.385e-15
Identity = 66/242 (27.27%), Postives = 100/242 (41.32%), Query Frame = 2

Query: 3485 FSCNVC-QLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPL-QFTGRSGLNHHIT-------------------SGHRTDTDSTTQSGHHDDFLAKLIAADP-----------------NFSPQSCLICQEIMNNEFELDIHT----IEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEEC 4084
            + C +C      SLR RD H  + H G  +F C++C L++  +I LR+HA   H  +     +GK    E D S +CP C L  FT R+ L  H+                     G R  +   ++ G H+D  A  ++ +P                 + +P SC IC   M+N  E  +H     +E ++EC+       Q  C  C R+FFG  G+  L  H  + H     P+   C
Sbjct:  372 YVCPLCGDNALASLRERDEHLQASHNGELVFPCQICGLAYPLYIALRRHAALKHESDFDTVRYGKPELLETD-SVECPLCKLVAFTDRAVLKLHVAEVHKKNPEEIKLPSKHGARGGSRKGSRRKSKYGDHNDGAAYAVSKNPQPVVLSRLEQLLAGVPGDPAPVSCRICHTQMDNAKEFLLHLELDHVETEEECE-------QLGCQACGRIFFGPGGRIDLIGHLRVCHQDTDQPDALPC 605

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BLAST of SMED30018953 vs. TrEMBL
Match: A0A504Z591 (Zinc finger C2H2 OS=Fasciola gigantica OX=46835 GN=FGIG_06453 PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.961e-14
Identity = 63/242 (26.03%), Postives = 101/242 (41.74%), Query Frame = 2

Query: 3485 FSCNVC-QLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPL-QFTGRSGLNHHIT-------------------SGHRTDTDSTTQSGHHDDFLAKLIAADP-----------------NFSPQSCLICQEIMNNEFELDIHT----IEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEEC 4084
            + C +C      SLR RD H  + H G  +F C++C L++  +I LR+HA   H  +     +G+    + D S +CP C L  FT RS L  H++                    G R  +   ++ G  +D  A  ++ +P                 + +P SC IC+  M+N  E  +H     ++ ++EC+       Q  C  C R+FFG  G+  L  H  + H     P+   C
Sbjct:  174 YVCPLCGDNALASLRERDEHLQASHNGELVFPCQICGLAYPLYIALRRHAALKHESDFDTVRYGRPELLDSD-SVECPVCRLVAFTDRSVLKLHVSEVHKQDPAQVKLPSKLTSRGGSRKGSRRKSKYGDQNDGAAYAVSTNPQPIVLSRLEQLLANVSGDPAPISCRICRTQMDNAKEFLLHLELDHVDAEEECE-------QLGCQACGRIFFGPGGRIDLIGHLRVCHQDTDQPDALPC 407

[Close]

BLAST of SMED30018953 vs. TrEMBL
Match: A0A4E0RLB8 (Zinc finger C2H2 OS=Fasciola hepatica OX=6192 GN=D915_007392 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.897e-13
Identity = 91/377 (24.14%), Postives = 132/377 (35.01%), Query Frame = 2

Query: 3485 FSCNVC-QLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPL-QFTGRSGLNHHITSGHRTDTDST-------------------TQSGHHDDFLAKLIAADP-----------------NFSPQSCLICQEIMNNEFELDIHTIEHQKECQT--------AELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNC-------------------------------------EECDTKFSSTVCYSMHRKSVKNCSKKTPD---QLKIEDPYEK----LNDPMK-----------------LAFVCSRCQTLVAGQSAELRFEEHNIEC 4294
            + C +C      SLR RD H  + H G  +F C++C L++  +I LR+HA   H  +     +G+    + D S +CP C L  FT RS L  H++  H+ D                       ++ G  +D  A  ++ +P                 + +P SC IC+  M+N  E  +H   H    +         AE E  Q  C  C R+FFG  G+  L  H  + H     P+                                        CD  FSS     +H       +KK P     L IE P ++    L D ++                 LA+ C  C  L AG  A  RF  H   C
Sbjct:  365 YVCPLCGDNALASLRERDEHLQASHNGELVFPCQICGLAYPLYIALRRHAALKHESDFDTVRYGRPELLDSD-SVECPVCRLVAFTDRSVLKLHVSEVHKQDPAQVKLPSKLTSRGGSRKGSRRKSKYGDQNDGAAYAVSTNPQPIVLSRLEQLLANVSGDPAPISCRICRTQMDNAKEFLLHLELHDHSFRNIYLQDHVDAEEECEQLGCQACGRIFFGPGGRIDLIGHLRVCHQDTDQPDALPCLQAEKVLEQESSPEKPRKDKTDNESTKLNPVDVTRPCDATFSSPRLRQLH---FSTSTKKHPGFSCPLTIELPEDQDLTSLTDQIRAAIMETEMAADREGLMILAYCCPNCSRLFAGNQAPSRFAHHRRIC 737

[Close]

BLAST of SMED30018953 vs. TrEMBL
Match: A0A1I8J6C3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.367e-8
Identity = 69/297 (23.23%), Postives = 122/297 (41.08%), Query Frame = 2

Query: 3443 NSTKSSISP-LKSENFSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSG---HRTDTDSTT---------QSGHHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTVCYSMHRKSVKNCSKKTPDQLKIEDPYEKLNDPMKLAFVCSRCQTLVAGQSAELRFEEHNIEC 4294
            N++  S+   L     +C +C  +F+ + A + H   +H     + C  C + F +   LR H +  H     + +  KE    +  S      P   +G  G N  +       RTD              QS  + +  + L A  P  +   C  C E  +N+ EL  H   H  +         +F C +C ++F G + K+ L DH  + HL+KP   C ECD +F  +    +HR+  + C+   P           L  P+ +++ C+ C+ ++ G+ +  R+++H   C
Sbjct:  592 NASADSVGGNLDELKLTCELCSAQFEKITALERHIAVDHVDETPYECHQCPVYFPSFSRLRHHQRTVH----RVFMQWKEPPQTV-LSRMRSRSPA--SGGGGANTVLNLAVPLKRTDMAKVAYQQLRFFDQQSAANVNLESVLSAIPPMETVMFCDFCGETCHNKLELGRHLQSHSGK-------RLRFGCARCGQVFEGWNAKTDLVDHMKVDHLNKPRYRCNECDAQFKFSSLLKLHRE--RGCNSGKP-----------LARPV-VSYGCANCEKIICGEMSVERYQQHVDAC 860

[Close]

BLAST of SMED30018953 vs. TrEMBL
Match: A0A1I8GK92 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig029837g2 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.405e-8
Identity = 66/282 (23.40%), Postives = 115/282 (40.78%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSG---HRTDTDSTT---------QSGHHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTVCYSMHRKSVKNCSKKTPDQLKIEDPYEKLNDPMKLAFVCSRCQTLVAGQSAELRFEEHNIEC 4294
             +C +C  +F+ + A + H   +H     + C  C   F +   LR H +  H     + +  KE    +  S      P   +G  G N  +       RTD              QS  + +  + L A  P  +   C  C E  +N+ EL  H   H  +         +F C +C ++F G + K+ L DH  + HL+KP   C ECD +F  +    +HR+  + C+   P           L  P+ +++ C+ C+ ++ G+ +  R+++H   C
Sbjct:  616 LTCELCSAQFEKITALERHIAVDHVDETPYECHQCPAYFPSFSRLRHHQRTVH----RVFMQWKEPPQTV-LSRMRSRSPA--SGGGGANTVLNLAVPLKRTDMAKVAYQQLRFFDQQSAANVNLESVLSAIPPMETVMFCDFCGETCHNKLELGRHLQSHSGK-------RLRFGCARCGQVFEGWNAKTDLVDHMKVDHLNKPRYRCNECDAQFKFSSLLKLHRE--RGCNSGKP-----------LARPV-VSYGCANCEKIICGEMSVERYQQHVDAC 869

[Close]

BLAST of SMED30018953 vs. Ensembl Cavefish
Match: znf532 (zinc finger protein 532 [Source:NCBI gene;Acc:103037273])

HSP 1 Score: 51.6026 bits (122), Expect = 8.062e-6
Identity = 30/105 (28.57%), Postives = 48/105 (45.71%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRT 3781
            + C +C + FKS     SH  ++H G+K      ++ C +CD  FT   LL  H  + HI N  +++            F+CP C + +  +  +  HI S H T
Sbjct:  839 YKCPICPMAFKSAPGTHSHAYTQHPGVKIGEPKLIYKCSMCDTVFTQQTLLFTHFDQ-HISNQKVSI------------FKCPDCSMHYAQKQLMLEHIKSTHGT 930

[Close]

BLAST of SMED30018953 vs. Ensembl Cavefish
Match: znf532 (zinc finger protein 532 [Source:NCBI gene;Acc:103037273])

HSP 1 Score: 51.6026 bits (122), Expect = 8.265e-6
Identity = 30/105 (28.57%), Postives = 48/105 (45.71%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRT 3781
            + C +C + FKS     SH  ++H G+K      ++ C +CD  FT   LL  H  + HI N  +++            F+CP C + +  +  +  HI S H T
Sbjct:  839 YKCPICPMAFKSAPGTHSHAYTQHPGVKIGEPKLIYKCSMCDTVFTQQTLLFTHFDQ-HISNQKVSI------------FKCPDCSMHYAQKQLMLEHIKSTHGT 930

[Close]

BLAST of SMED30018953 vs. Ensembl Cavefish
Match: znf532 (zinc finger protein 532 [Source:NCBI gene;Acc:103037273])

HSP 1 Score: 51.6026 bits (122), Expect = 8.383e-6
Identity = 30/105 (28.57%), Postives = 48/105 (45.71%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLK------LFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRT 3781
            + C +C + FKS     SH  ++H G+K      ++ C +CD  FT   LL  H  + HI N  +++            F+CP C + +  +  +  HI S H T
Sbjct:  839 YKCPICPMAFKSAPGTHSHAYTQHPGVKIGEPKLIYKCSMCDTVFTQQTLLFTHFDQ-HISNQKVSI------------FKCPDCSMHYAQKQLMLEHIKSTHGT 930

[Close]

BLAST of SMED30018953 vs. Ensembl Medaka
Match: ENSORLT00000033754.1 (pep primary_assembly:ASM223467v1:2:8674163:8720484:-1 gene:ENSORLG00000028567.1 transcript:ENSORLT00000033754.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 54.6842 bits (130), Expect = 7.403e-7
Identity = 62/215 (28.84%), Postives = 86/215 (40.00%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDS-------TTQSGHHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTV 4108
            F C +C+  F  + + ++HT   H G K F CKVC  SF+    L+ H +K+                E  FS  C  C   F+ +S LN H+    RT T           +S      L           P SC +C    +N   L  HT +H  E      +P  F+C +C + F     K  LK H       KP  +C+ECD +FS  V
Sbjct:  303 FPCKICEKSFSQISSLNAHTRI-HTGEKPFSCKVCYTSFSNASHLKTHTRKH--------------TGEKPFS--CKECDTSFSHKSNLNTHM----RTHTGERPFPCKICEKSFSQISSLNAHTRIHTGEKPFSCKVCYTSFSNASHLKTHTRKHTGE------KP--FSCKECDKSF---TQKYNLKTHMRTHTGEKPF-SCKECDKRFSQIV 484

[Close]

BLAST of SMED30018953 vs. Ensembl Medaka
Match: ENSORLT00000042120.1 (pep primary_assembly:ASM223467v1:2:7322076:7518297:-1 gene:ENSORLG00000030630.1 transcript:ENSORLT00000042120.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 52.7582 bits (125), Expect = 3.348e-6
Identity = 67/226 (29.65%), Postives = 84/226 (37.17%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQ--------------KYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDST-------TQSGHHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFS 4099
            FSC  C   F+ +   +SH  + H G K F CK CD SFT    L++H +              K    N SL    + +  E  FS  C  C   FT  S L  H+    RT T           +S  H   L   +       P SC+ C    +    L  H   H  E          F+C +C   F  R   S LK H       KP P C+ECDT FS
Sbjct:  206 FSCKECDQSFRQIAHLNSHMRT-HTGDKPFSCKECDQSFTRMYSLKRHMRTHTEEKPFSCQGCDKSFSQNNSLKAHMRTHTGEKPFS--CNACDRSFTNVSNLKSHM----RTHTGEKPFSCKECDKSFSHICALKTHMRTHTGEKPFSCIECDTCFSRISNLKRHMRTHTGE--------KPFSCKECDASFSHR---SSLKTHMRTHTGEKPFP-CKECDTTFS 412

[Close]

BLAST of SMED30018953 vs. Ensembl Medaka
Match: ENSORLT00000034635.1 (pep primary_assembly:ASM223467v1:2:7322076:7518358:-1 gene:ENSORLG00000030630.1 transcript:ENSORLT00000034635.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 52.7582 bits (125), Expect = 3.360e-6
Identity = 67/226 (29.65%), Postives = 84/226 (37.17%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQ--------------KYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDST-------TQSGHHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFS 4099
            FSC  C   F+ +   +SH  + H G K F CK CD SFT    L++H +              K    N SL    + +  E  FS  C  C   FT  S L  H+    RT T           +S  H   L   +       P SC+ C    +    L  H   H  E          F+C +C   F  R   S LK H       KP P C+ECDT FS
Sbjct:  218 FSCKECDQSFRQIAHLNSHMRT-HTGDKPFSCKECDQSFTRMYSLKRHMRTHTEEKPFSCQGCDKSFSQNNSLKAHMRTHTGEKPFS--CNACDRSFTNVSNLKSHM----RTHTGEKPFSCKECDKSFSHICALKTHMRTHTGEKPFSCIECDTCFSRISNLKRHMRTHTGE--------KPFSCKECDASFSHR---SSLKTHMRTHTGEKPFP-CKECDTTFS 424

[Close]

BLAST of SMED30018953 vs. Ensembl Medaka
Match: ENSORLT00000000466.2 (pep primary_assembly:ASM223467v1:2:7322076:7520600:-1 gene:ENSORLG00000030630.1 transcript:ENSORLT00000000466.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 52.373 bits (124), Expect = 4.087e-6
Identity = 68/226 (30.09%), Postives = 86/226 (38.05%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQ--------------KYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTD-------STTQSGHHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFS 4099
            FSC  C   F+ +   +SH  + H G K F CK CD SFT    L++H +              K    N SL    + +  E  FS  C  C   FT  S L  H+    RT T           +S  H   L   +       P SC+ C    +    L  H   H  E      +P  F+C +C   F  R   S LK H       KP P C+ECDT FS
Sbjct:  120 FSCKECDQSFRQIAHLNSHMRT-HTGDKPFSCKECDQSFTRMYSLKRHMRTHTEEKPFSCQGCDKSFSQNNSLKAHMRTHTGEKPFS--CNACDRSFTNVSNLKSHM----RTHTGEKPFSCKECDKSFSHICALKTHMRTHTGEKPFSCIECDTCFSRISNLKRHMRTHTGE------KP--FSCKECDASFSHR---SSLKTHMRTHTGEKPFP-CKECDTTFS 326

[Close]

BLAST of SMED30018953 vs. Ensembl Medaka
Match: ENSORLT00000038558.1 (gastrula zinc finger protein XlCGF57.1 [Source:NCBI gene;Acc:101163567])

HSP 1 Score: 51.9878 bits (123), Expect = 4.542e-6
Identity = 50/219 (22.83%), Postives = 88/219 (40.18%), Query Frame = 2

Query: 3449 TKSSISPLKSENFSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHIT--SGHRTDTDSTTQSGHHDDF-LAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKF 4096
            T + + P     ++C++C ++F        HT + H G+K + C +CD+ F          Q+YH+   SL   G +        + C  C ++F  R  L  H    +G +    S         + LA+         P +C +C       ++L+ H++ H        ++P  +AC  C + FF R    Y    +++ H+      C  CD KF
Sbjct:  219 THTGVKP-----YACSLCDMRFFQRYHLARHTLT-HTGVKPYACSMCDMRF---------FQRYHLARHSLTHTGVK-------PYACSMCDMRFFQRYHLARHTLTHTGVKPYACSMCDMRFFQRYHLARHTLTHTGVKPYACTMCDMRFIQRYQLERHSLTH------TGVKP--YACTMCDKRFFQR----YHLARHSLTHMGVKPYACTMCDMKF 403

[Close]

BLAST of SMED30018953 vs. Planmine SMEST
Match: SMESG000030062.1 (SMESG000030062.1)

HSP 1 Score: 2716.03 bits (7039), Expect = 0.000e+0
Identity = 1433/1437 (99.72%), Postives = 1434/1437 (99.79%), Query Frame = 2

Query:   83 EKSVEECINYNFDDNSPVNXXXXXXXXXXXXXDHQVNGKSDAPLTNWLECKTSYSWLYVNNEHPKCSICDEAIKECNEISTTSWTNSEMSLEKHDPKFDEEKILQIHMTSDNHIKATEILSTKLTETKLDCDFTESIPSFISNSEWNYLKIQFPWLIFKNDSLSCSICNETSVKQKKAISTLNLFGNLSQKYQRDFKQFEKHGKKLGHSKDLCQSNDLNLTPKKEEPKRVSNSTPRKSIVFSQPNVTTRTAIRKSLYDRNIVPDSIDETSWNEVKSEYPWVYAHQNILGCLYCEDAFKINNESMMPTSWTNPDTTENRQFTSLKDLRSKYRLNQHQLTKNHKTATRVLSHGKPINATNQKKTESTVKVETIPVPAVESKPIDFRVPSTVRASRKSAPSKLTFDDKIGHXXXXXXXXXXXXIDLSSIPSFLTEDQYITLTTKYGWLNLTNESLYSCSVCLEALKIVPDAVIKTKFTSGPDPLEPPLTYSIFRKRLYRHAESKSHSSALTIVNRSSSELPKXXXXXXXXXXXXXXXXXXXXXXXXXDSRFTRLKSGIRSKIDYKRMSEGNSQSEPTEHYTYEVINLPVPESPKKRKESSTVSSSITWMCPQCKSHFRNTDDLIQHISLCDYHQSFDSTQQQQLACPCNPTVLRFNTITKLDLHAAQEHDNQSYFHCYICSDRYNRLTALYHHMLTNHLISTWDPFEAYLPALKPSEQFRCLFCSCDFTSNLLLTKHYIFSDCRVRLQPTVVLESISGIVLAEISHNIQEEVTVLDVEELPDEKSTVIYSPVKKAKSQHNRISRNHPLRRFCXXXXXXXXXXXXXXDIQEQXXXXXXXXXXXXXXDHLPIDKSNNSKTDKSITDTESINQQNSDNVIINQTEPKPDQSVSETKPISSITNKIVTKNRNSKSRTKKPAIKSPKSMEMSHQVVDLNEIMHESRSLLTESTKRIDHLLPVSSKRKKEPIRIQSQLSPCKKLKPQIERPAPMPITPGNDVDNSEMILSGLSFMDRMKKIRQMKKNRTEQQREQMMAVERKIAEINEQFQGPNSLIDKSDRIKKLLSSDQYSMADLKSIMQSEAIRSSRAEKRRNPDEINHLLXXXXXXXXXXXXXXXMTVPTTLVIDNSTKSSISPLKSENFSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTVCYSMHRKSVKNCSKKTPDQLKIEDPYEKLNDPMKLAFVCSRCQTLVAGQSAELRFEEHNIECNXXXXXXXXXXXXXXECPIVTQPQPAECVDNGQ 4393
            EKSVEECINYNFDDNSPVNQKSKRQSFRSKSKDHQVNGKSDAPLTNWLECK SYSWLYVNNEHPKCSICDEAIKECNEIS TSWTNSEMSLEKHDPKFDEEKILQIHMTSDNHIKATEILSTKLTETKLDCDFTE IPSFISNSEWNYLKIQFPWLIFKNDSLSCSICNETSVKQKKAISTLNLFGNLSQKYQRDFKQFEKHGKKLGHSKDLCQSNDLNLTPKKEEPKRVSNSTPRKSIVFSQPNVTTRTAIRKSLYDRNIVPDSIDETSWNEVKSEYPWVYAHQNILGCLYCEDAFKINNESMMPTSWTNPDTTENRQFTSLKDLRSKYRLNQHQLTKNHKTATRVLSHGKPINATNQKKTESTVKVETIPVPAVESKPIDFRVPSTVRASRKSAPSKLTFDDKIGHSETEKSKKSPEKIDLSSIPSFLTEDQYITLTTKYGWLNLTNESLYSCSVCLEALKIVPDAVIKTKFTSGPDPLEPPLTYSIFRKRLYRHAESKSHSSALTIVNRSSSELPKVSSTQSVAVVSQQQPLQSSQPLPSADSRFTRLKSGIRSKIDYKRMSEGNSQSEPTEHYTYEVINLPVPESPKKRKESSTVSSSITWMCPQCKSHFRNTDDLIQHISLCDYHQSFDSTQQQQLACPCNPTVLRFNTITKLDLHAAQEHDNQSYFHCYICSDRYNRLTALYHHMLTNHLISTWDPFEAYLPALKPSEQFRCLFCSCDFTSNLLLTKHYIFSDCRVRLQPTVVLESISGIVLAEISHNIQEEVTVLDVEELPDEKSTVIYSPVKKAKSQHNRISRNHPLRRFCSDKKNKIKESPKKSDIQEQNISESINKSNSEKSDHLPID+SNNSKTDKSITDTESINQQNSDNVIINQTEPKPDQSVSETKPISSITNKIVTKNRNSKSRTKKPAIKSPKSMEMSHQVVDLNEIMHESRSLLTESTKRIDHLLPVSSKRKKEPIRIQSQLSPCKKLKPQIERPAPMPITPGNDVDNSEMILSGLSFMDRMKKIRQMKKNRTEQQREQMMAVERKIAEINEQFQGPNSLIDKSDRIKKLLSSDQYSMADLKSIMQSEAIRSSRAEKRRNPDEINHLLQQPPPPGTPPKQQKQMTVPTTLVIDNSTKSSISPLKSENFSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTVCYSMHRKSVKNCSKKTPDQLKIEDPYEKLNDPMKLAFVCSRCQTLVAGQSAELRFEEHNIECNAAAAAAATTDDRADECPIVTQPQPAECVDNGQ
Sbjct:    9 EKSVEECINYNFDDNSPVNQKSKRQSFRSKSKDHQVNGKSDAPLTNWLECKNSYSWLYVNNEHPKCSICDEAIKECNEISMTSWTNSEMSLEKHDPKFDEEKILQIHMTSDNHIKATEILSTKLTETKLDCDFTEGIPSFISNSEWNYLKIQFPWLIFKNDSLSCSICNETSVKQKKAISTLNLFGNLSQKYQRDFKQFEKHGKKLGHSKDLCQSNDLNLTPKKEEPKRVSNSTPRKSIVFSQPNVTTRTAIRKSLYDRNIVPDSIDETSWNEVKSEYPWVYAHQNILGCLYCEDAFKINNESMMPTSWTNPDTTENRQFTSLKDLRSKYRLNQHQLTKNHKTATRVLSHGKPINATNQKKTESTVKVETIPVPAVESKPIDFRVPSTVRASRKSAPSKLTFDDKIGHSETEKSKKSPEKIDLSSIPSFLTEDQYITLTTKYGWLNLTNESLYSCSVCLEALKIVPDAVIKTKFTSGPDPLEPPLTYSIFRKRLYRHAESKSHSSALTIVNRSSSELPKVSSTQSVAVVSQQQPLQSSQPLPSADSRFTRLKSGIRSKIDYKRMSEGNSQSEPTEHYTYEVINLPVPESPKKRKESSTVSSSITWMCPQCKSHFRNTDDLIQHISLCDYHQSFDSTQQQQLACPCNPTVLRFNTITKLDLHAAQEHDNQSYFHCYICSDRYNRLTALYHHMLTNHLISTWDPFEAYLPALKPSEQFRCLFCSCDFTSNLLLTKHYIFSDCRVRLQPTVVLESISGIVLAEISHNIQEEVTVLDVEELPDEKSTVIYSPVKKAKSQHNRISRNHPLRRFCSDKKNKIKESPKKSDIQEQNISESINKSNSEKSDHLPIDQSNNSKTDKSITDTESINQQNSDNVIINQTEPKPDQSVSETKPISSITNKIVTKNRNSKSRTKKPAIKSPKSMEMSHQVVDLNEIMHESRSLLTESTKRIDHLLPVSSKRKKEPIRIQSQLSPCKKLKPQIERPAPMPITPGNDVDNSEMILSGLSFMDRMKKIRQMKKNRTEQQREQMMAVERKIAEINEQFQGPNSLIDKSDRIKKLLSSDQYSMADLKSIMQSEAIRSSRAEKRRNPDEINHLLQQPPPPGTPPKQQKQMTVPTTLVIDNSTKSSISPLKSENFSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTVCYSMHRKSVKNCSKKTPDQLKIEDPYEKLNDPMKLAFVCSRCQTLVAGQSAELRFEEHNIECNAAAAAAATTDDRADECPIVTQPQPAECVDNGQ 1445

[Close]

BLAST of SMED30018953 vs. Planmine SMEST
Match: SMESG000001051.1 (SMESG000001051.1)

HSP 1 Score: 153.68 bits (387), Expect = 1.540e-37
Identity = 95/287 (33.10%), Postives = 142/287 (49.48%), Query Frame = 2

Query: 3485 FSCNVCQLKFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVSLAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSGHHD-----------------DFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAELEPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTVCYSMHRKSVKNCSKKTPDQLKIEDPYEKLNDPMKLAFVCSRCQTLVAGQSAELRFEEHNIEC 4294
             +C VC   F++L  R  H +  H  L+ F CK+C L FT     R+H ++ H + +      K+  +  D ++ C  C L FT ++ L+HH++  H    ++TT+  + +                 D L  LI  D    P  C  C+   NN FEL +H+  H ++ +  +       CP C RLFFG++ KSYLKDHYN  HL K  P C  C   FSS+  Y + +  + N  +     L I+DPY  L    KLAF CS+C  ++AGQ+++ RF+ H   C
Sbjct:  520 LTCPVCHSSFQNLDVRLQHVSINHPELEKFTCKICGLIFTNQTNYRRHLERSHQNTLP-----KQTKAIPDKTYSCEKCHLVFTNQADLSHHLSFSHPEIIENTTEEPNLEIVQNDDGDCIEPIAKPVDELETLINTDCEEKPSQCPTCEAFFNNPFELLVHSYTHIEDSEENDFFQI---CPNCSRLFFGKNSKSYLKDHYNSEHLKKSSPQCGICKLTFSSS--YVLEKHQINNDCQ----TLSIDDPYFSLMAVEKLAFSCSQCGLIIAGQNSKTRFDVHMNNC 792

[Close]

BLAST of SMED30018953 vs. Planmine SMEST
Match: SMESG000056071.1 (SMESG000056071.1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.574e-12
Identity = 75/294 (25.51%), Postives = 113/294 (38.44%), Query Frame = 2

Query:  242 YSWLYVNNEHPKCSICDEAIKECNEISTTSWTNSEMSLEKHDPKFDEEKILQIHMTSDNHIKATEILSTKLTETKLDCDFTESIPSFISNSEWNYLKIQFPWLIFKNDSLSCSICNETSVKQKKAISTLNLFGNLSQKYQR--DFKQFEKHGKKLGHSKDLCQSNDLNLTPKKEEPKRVSNSTPRKSIVFSQPNVTTRTAIRKSLYDRNIVPDSIDETSWNEVKSEYPWVYAHQN-ILGCLYCEDAFKINNESMMPTSWTN---PDTTENRQFTSLKDLRSKYRLNQHQLTKNH 1105
            Y WLY+ + +P C  C+EA K   E+S T WT+   + E +       + L+ H  S NH +A +IL+      ++D DF    P       W ++K ++ WL +K  +  C  C +     +     LN F N S KY      + F  H     H              K  E +  SN     SI     +     +I     +   V   I+   W ++  +YPW         GC  C++  K++        WT    P T      T+ + LR K  L  H L K H
Sbjct:  171 YPWLYLKHNNPGCQYCEEAFKMSTEMSATKWTDPTPTFEINCVD-RPNRALRRHQLSKNHRRAIDILNENSVSNEIDDDF----PRGFRKERWEFIKKKYSWLYYKMGNYHCMYCEQAYENPQ----ILNTFENESNKYSETAKLRHFNHHQNSNIH--------------KIAEDRFNSNG----SISLEMLHDEFANSIFNEDANYRTVTQEINCELWRKLMDKYPWFLGENGKYYGCKVCKNLSKLSTNCSNLNLWTQGMIPFTI----ITTYEHLRKK--LYSHNLNKTH 431

HSP 2 Score: 62.003 bits (149), Expect = 3.104e-9
Identity = 61/233 (26.18%), Postives = 102/233 (43.78%), Query Frame = 2

Query:  449 KLTETKLDCDFTESIPSFISNSEWNYLKIQFPWLIFKNDSLSCSICNETSVKQKKAISTLNLFGNLSQKYQRDFKQ------FEKHGKKLGHSKDLCQSNDLNLTPKKEEPKRVSNSTPRKSIVFSQPNVTTRTAIRKSLYDRNIVPDSIDETSWNEVKSEYPWVYAHQNILGCLYCEDAFKINNESMMPTSWTNPDTTENRQFTSLKDLRSKYRLNQHQLTKNHKTATRVLS 1129
            ++ E K    F +   + I N  W     QF WL+++N  L C  C +   + +  + + + +  +++   R F +       + H     H   +C  N LN    K +   V  S     +  ++ N    T + + +    I+  S   + W+   + YPW+Y   N  GC YCE+AFK++ E M  T WT+P  T    F      R    L +HQL+KNH+ A  +L+
Sbjct:   15 QIFENKTFNQFNKENENSIPNCVWEQYYNQFKWLLYENGILQCRYCQDAYKRFQPQVES-DEWTEINEYSYRIFNKDDLILILKIHDFSENH---ICSMNLLNGENDKIQNCDVIESDRSGDMCITESNDMIST-LSEEMLPLPIICSSKSSSRWSHYMNYYPWLYLKHNNPGCQYCEEAFKMSTE-MSATKWTDPTPT----FEINCVDRPNRALRRHQLSKNHRRAIDILN 237

[Close]

BLAST of SMED30018953 vs. Planmine SMEST
Match: SMESG000018987.1 (SMESG000018987.1)

HSP 1 Score: 52.373 bits (124), Expect = 2.708e-6
Identity = 28/102 (27.45%), Postives = 43/102 (42.16%), Query Frame = 2

Query: 1895 WMCPQCKSHFRNTDDLIQHISLCDYHQSFDSTQQQQLACPCNPTVLRFNTITKLDLHAAQEHDNQSYFHCYICSDRYNRLTALYHHMLTNHLISTWDPFEAY 2200
            W CPQC   ++    L+ HI  C+    F +        PCN       ++   DLH  + H NQ  F C IC   +     L+ H+   H    W+P++ +
Sbjct:  199 WSCPQCNKIYKFKKALVTHIYSCNPKILFLND-----CVPCNCKKSNITSLVSCDLHVTKYHPNQYLFVCQICRFEFRESAVLFEHLFLKH-DYFWNPYKEF 294

The following BLAST results are available for this feature:

BLAST of SMED30018953 vs. Ensembl Human
BLAST of SMED30018953 vs. Ensembl Celegans
BLAST of SMED30018953 vs. Ensembl Fly
BLAST of SMED30018953 vs. Ensembl Zebrafish
BLAST of SMED30018953 vs. Ensembl Xenopus
BLAST of SMED30018953 vs. Ensembl Mouse
BLAST of SMED30018953 vs. UniProt/SwissProt
BLAST of SMED30018953 vs. TrEMBL
BLAST of SMED30018953 vs. Ensembl Cavefish
BLAST of SMED30018953 vs. Ensembl Sea Lamprey
BLAST of SMED30018953 vs. Ensembl Yeast
BLAST of SMED30018953 vs. Ensembl Nematostella
BLAST of SMED30018953 vs. Ensembl Medaka
BLAST of SMED30018953 vs. Planmine SMEST

BLAST of SMED30018953 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ZNF532	3.656e-7	24.45	zinc finger protein 532 [Source:HGNC Symbol;Acc:HG...	[more]
ZNF532	3.656e-7	24.45	zinc finger protein 532 [Source:HGNC Symbol;Acc:HG...	[more]
ZNF532	3.656e-7	24.45	zinc finger protein 532 [Source:HGNC Symbol;Acc:HG...	[more]
ZNF532	3.656e-7	24.45	zinc finger protein 532 [Source:HGNC Symbol;Acc:HG...	[more]
ZNF532	3.656e-7	24.45	zinc finger protein 532 [Source:HGNC Symbol;Acc:HG...	[more]

BLAST of SMED30018953 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018953 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018953 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
si:dkey-30k6.5	2.719e-7	24.43	si:dkey-30k6.5 [Source:ZFIN;Acc:ZDB-GENE-091204-29...	[more]
znf740a	6.373e-7	25.43	zinc finger protein 740a [Source:ZFIN;Acc:ZDB-GENE...	[more]
si:dkey-30k6.5	1.473e-6	24.43	si:dkey-30k6.5 [Source:ZFIN;Acc:ZDB-GENE-091204-29...	[more]
zgc:193790	4.071e-6	26.81	zgc:193790 [Source:ZFIN;Acc:ZDB-GENE-080723-55]	[more]

BLAST of SMED30018953 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSXETT00000047589.1	3.702e-6	26.01	pep primary_assembly:Xenopus_tropicalis_v9.1:KV460...	[more]
ENSXETT00000047580.1	3.702e-6	26.01	pep primary_assembly:Xenopus_tropicalis_v9.1:KV460...	[more]
oscp1	5.874e-6	29.52	organic solute carrier partner 1 [Source:Xenbase;A...	[more]
oscp1	5.907e-6	29.52	organic solute carrier partner 1 [Source:Xenbase;A...	[more]
oscp1	6.049e-6	29.52	organic solute carrier partner 1 [Source:Xenbase;A...	[more]

BLAST of SMED30018953 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Zfp532	5.225e-8	24.45	zinc finger protein 532 [Source:MGI Symbol;Acc:MGI...	[more]
Zfp532	5.225e-8	24.45	zinc finger protein 532 [Source:MGI Symbol;Acc:MGI...	[more]
Zfp532	5.225e-8	24.45	zinc finger protein 532 [Source:MGI Symbol;Acc:MGI...	[more]
Zfp532	5.225e-8	24.45	zinc finger protein 532 [Source:MGI Symbol;Acc:MGI...	[more]
Zfp532	5.225e-8	24.45	zinc finger protein 532 [Source:MGI Symbol;Acc:MGI...	[more]

BLAST of SMED30018953 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1


Match Name	E-value	Identity	Description
sp\|Q9HCE3\|ZN532_HUMAN	1.755e-6	24.45	Zinc finger protein 532 OS=Homo sapiens OX=9606 GN...	[more]

BLAST of SMED30018953 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A183AK87	3.385e-15	27.27	C2H2-type domain-containing protein OS=Echinostoma...	[more]
A0A504Z591	8.961e-14	26.03	Zinc finger C2H2 OS=Fasciola gigantica OX=46835 GN...	[more]
A0A4E0RLB8	4.897e-13	24.14	Zinc finger C2H2 OS=Fasciola hepatica OX=6192 GN=D...	[more]
A0A1I8J6C3	1.367e-8	23.23	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]
A0A1I8GK92	2.405e-8	23.40	Uncharacterized protein OS=Macrostomum lignano OX=...	[more]

BLAST of SMED30018953 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
znf532	8.062e-6	28.57	zinc finger protein 532 [Source:NCBI gene;Acc:1030...	[more]
znf532	8.265e-6	28.57	zinc finger protein 532 [Source:NCBI gene;Acc:1030...	[more]
znf532	8.383e-6	28.57	zinc finger protein 532 [Source:NCBI gene;Acc:1030...	[more]

BLAST of SMED30018953 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018953 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018953 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30018953 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSORLT00000033754.1	7.403e-7	28.84	pep primary_assembly:ASM223467v1:2:8674163:8720484...	[more]
ENSORLT00000042120.1	3.348e-6	29.65	pep primary_assembly:ASM223467v1:2:7322076:7518297...	[more]
ENSORLT00000034635.1	3.360e-6	29.65	pep primary_assembly:ASM223467v1:2:7322076:7518358...	[more]
ENSORLT00000000466.2	4.087e-6	30.09	pep primary_assembly:ASM223467v1:2:7322076:7520600...	[more]
ENSORLT00000038558.1	4.542e-6	22.83	gastrula zinc finger protein XlCGF57.1 [Source:NCB...	[more]

BLAST of SMED30018953 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4


Match Name	E-value	Identity	Description
SMESG000030062.1	0.000e+0	99.72	SMESG000030062.1	[more]
SMESG000001051.1	1.540e-37	33.10	SMESG000001051.1	[more]
SMESG000056071.1	1.574e-12	25.51	SMESG000056071.1	[more]
SMESG000018987.1	2.708e-6	27.45	SMESG000018987.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence
protein sequence

transcript sequence

>SMED30018953 ID=SMED30018953|Name=SMED30018953|organism=Schmidtea mediterranea sexual|type=transcript|length=5027bp
CAATAATAATTATTTTATTTAATACAACCAAAAAAATTAAGTATCCAATT
GATAGAATATGAATTCGGATTTTTCAAATTTTGAAAAATCTGTGGAAGAA
TGTATTAATTATAATTTTGATGACAATTCTCCAGTAAATCAAAAATCCAA
GAGGCAATCTTTCCGATCCAAATCAAAAGATCATCAAGTTAATGGGAAAT
CTGATGCTCCGTTAACGAATTGGTTGGAATGTAAAACTTCATATTCTTGG
CTCTATGTAAACAATGAACACCCGAAATGCAGTATTTGCGATGAAGCTAT
TAAGGAATGTAATGAAATATCTACGACTAGTTGGACGAATAGTGAAATGA
GTTTAGAGAAGCACGATCCGAAATTTGACGAAGAAAAAATTCTACAGATT
CATATGACAAGTGACAATCACATTAAAGCCACTGAAATTCTTTCGACGAA
GTTAACAGAGACAAAATTGGACTGCGATTTCACAGAAAGTATTCCTAGTT
TTATTTCAAATTCTGAATGGAATTATTTAAAAATTCAATTTCCTTGGTTG
ATTTTCAAAAATGATTCTCTCAGTTGTTCGATTTGTAATGAAACTTCCGT
TAAACAAAAAAAGGCGATTTCCACTTTAAATCTTTTTGGAAATTTATCAC
AGAAATATCAGCGTGATTTTAAACAATTTGAAAAACACGGAAAAAAGCTT
GGTCACTCAAAAGACTTATGTCAGTCTAACGATTTGAATTTAACCCCCAA
AAAAGAAGAACCAAAGCGGGTTTCAAATTCAACTCCTAGAAAGTCGATAG
TTTTCTCTCAGCCGAATGTCACAACAAGAACAGCGATCCGGAAATCGCTC
TATGATCGGAACATCGTTCCGGATTCAATAGACGAGACCTCATGGAACGA
GGTGAAATCGGAATATCCTTGGGTTTATGCCCATCAAAATATCCTCGGCT
GTTTGTATTGTGAGGATGCATTTAAAATTAACAACGAATCGATGATGCCG
ACATCATGGACAAATCCGGATACGACTGAAAATCGTCAGTTTACTTCCTT
AAAGGATTTAAGATCGAAATATCGACTCAATCAGCACCAGTTGACAAAAA
ACCATAAAACTGCCACTAGAGTTCTTTCACATGGCAAGCCAATAAACGCA
ACAAACCAGAAAAAAACAGAATCCACTGTGAAAGTTGAAACTATTCCAGT
GCCTGCTGTTGAATCGAAACCAATCGATTTCCGGGTTCCCAGTACAGTGA
GAGCCAGTAGAAAATCGGCTCCAAGTAAATTGACGTTTGATGATAAAATA
GGGCATTCCGAGACAGAAAAATCAAAGAAATCCCCAGAAAAAATAGATCT
ATCGTCGATTCCAAGTTTCCTCACAGAAGATCAATACATAACATTGACAA
CGAAATATGGTTGGTTGAATCTGACAAACGAGAGCTTATACAGTTGCTCA
GTTTGTCTCGAAGCACTGAAAATCGTTCCTGACGCGGTAATCAAAACGAA
ATTTACGAGTGGCCCAGACCCGTTAGAACCGCCACTGACATACAGTATAT
TCCGGAAACGGCTTTATCGACATGCCGAATCGAAGAGTCACAGCAGTGCT
CTCACAATTGTTAATCGGAGTAGCTCAGAATTACCCAAAGTCTCCTCGAC
ACAATCCGTGGCAGTCGTCAGTCAGCAGCAACCGTTGCAATCATCACAAC
CATTACCGTCGGCCGATTCTCGATTTACTCGACTGAAAAGTGGAATTAGA
TCGAAAATCGATTACAAACGAATGTCTGAAGGAAATAGCCAATCGGAACC
AACGGAGCACTATACGTATGAAGTGATTAATCTACCGGTTCCAGAATCCC
CGAAGAAACGCAAAGAATCCTCCACCGTCTCCTCTTCGATCACTTGGATG
TGTCCTCAATGTAAATCTCATTTCCGCAACACCGATGACCTGATTCAACA
TATCAGTCTATGCGATTACCACCAGTCGTTCGATAGCACCCAACAACAGC
AGCTGGCATGTCCTTGCAATCCAACAGTTCTCCGGTTCAACACGATCACA
AAATTGGATTTGCACGCCGCCCAAGAACACGACAACCAGTCGTATTTCCA
CTGCTACATTTGCTCAGATCGATACAATCGTCTCACAGCTCTCTATCACC
ACATGTTGACCAATCATTTGATCTCCACCTGGGATCCATTTGAAGCCTAT
TTACCAGCGTTGAAACCATCGGAACAGTTTCGCTGTCTGTTCTGCAGCTG
CGATTTCACCTCGAATCTTCTCCTGACTAAGCATTACATTTTCTCTGATT
GCCGAGTTCGATTACAACCGACAGTTGTGCTGGAATCCATTTCCGGTATC
GTGTTAGCAGAGATATCCCACAACATACAGGAAGAAGTAACGGTTCTCGA
TGTCGAAGAACTCCCAGATGAGAAATCCACAGTTATTTATTCTCCGGTAA
AAAAAGCCAAAAGCCAACACAACCGAATCAGCAGAAACCATCCGTTACGT
CGATTTTGTTCTGATAAAAAAAACAAAATCAAAGAATCCCCTAAAAAAAG
CGATATTCAAGAACAAAATATATCTGAATCAATCAATAAATCAAATTCTG
AAAAATCCGATCATTTACCAATCGATAAATCCAATAATTCAAAAACCGAT
AAATCAATTACAGATACAGAATCAATTAATCAACAAAATAGTGATAATGT
GATAATCAATCAAACCGAACCGAAACCCGATCAAAGTGTAAGTGAAACAA
AACCAATATCATCGATAACCAATAAAATCGTGACAAAAAATCGAAACTCC
AAATCGAGAACGAAAAAACCAGCAATAAAATCACCGAAATCAATGGAAAT
GAGTCACCAGGTTGTCGATCTGAATGAAATAATGCACGAATCTCGGAGTT
TGTTAACGGAATCGACAAAACGTATCGATCACCTATTACCGGTGAGTTCA
AAAAGAAAAAAGGAGCCGATCCGAATCCAGTCTCAGCTGTCACCGTGCAA
AAAACTGAAACCGCAAATCGAGCGCCCTGCACCGATGCCAATAACACCAG
GCAATGACGTAGACAACAGCGAGATGATCCTGTCAGGCCTGTCGTTCATG
GATCGAATGAAAAAGATCCGACAAATGAAAAAGAACAGGACCGAGCAGCA
ACGGGAACAAATGATGGCGGTGGAAAGGAAAATCGCGGAAATCAACGAGC
AATTTCAAGGTCCGAACTCGCTGATCGATAAATCCGATCGGATCAAGAAG
CTTCTGAGTTCTGACCAGTACTCAATGGCGGATCTGAAATCGATTATGCA
ATCGGAGGCGATCAGAAGCAGTCGGGCGGAAAAGCGCAGAAATCCCGATG
AAATCAACCACTTGCTGCAGCAGCCGCCGCCTCCAGGCACCCCACCGAAA
CAGCAGAAACAAATGACAGTACCGACAACACTGGTGATCGATAACAGCAC
CAAATCATCGATTTCCCCCCTGAAATCGGAAAACTTCTCATGCAACGTGT
GCCAGTTGAAATTCAAATCGCTACGTGCGCGGGACAGCCATACTACCAGT
GAGCACAAGGGATTGAAGCTGTTCTGCTGCAAGGTCTGTGATCTCAGCTT
CACAACTCACATCTTGCTCCGCAAGCACGCGCAGAAGTATCACATCGATA
ATGTCTCGCTCGCGGTTTTCGGCAAAGAAAATGCTTCGGAAATCGATTTC
TCGTTCCAGTGCCCATTTTGCCCCCTGCAGTTCACCGGCAGATCTGGATT
GAACCATCACATCACCAGTGGACATCGCACTGATACAGACAGCACCACTC
AGTCCGGACACCACGATGATTTCCTCGCAAAGTTGATTGCAGCTGATCCG
AATTTCTCACCGCAGTCCTGCTTGATTTGCCAGGAAATCATGAACAATGA
GTTTGAGCTCGATATCCACACGATTGAACATCAAAAAGAATGCCAAACCG
CAGAATTGGAACCGACGCAGTTTGCGTGCCCGAAATGTTGCCGGTTGTTT
TTCGGCCGAGATGGGAAGTCCTACCTAAAGGACCACTACAACATCATCCA
TTTAAGCAAACCGTTGCCGAATTGTGAAGAGTGCGACACGAAATTCTCCA
GCACCGTCTGTTATTCTATGCATCGAAAATCCGTGAAAAATTGCTCCAAA
AAAACCCCCGATCAGCTGAAAATCGAAGATCCCTATGAGAAACTGAACGA
TCCGATGAAATTGGCATTTGTATGCAGTCGATGTCAAACATTGGTTGCTG
GGCAATCGGCTGAGTTGCGGTTTGAGGAGCACAATATTGAGTGCAACGCC
GCCGCCGCCGCTGCTGCCACCACGGATGATAGAGCTGACGAGTGCCCGAT
TGTAACCCAGCCCCAGCCAGCAGAGTGTGTCGATAATGGGCAATAAATAT
ATATTTCATGTTTTTAGAATGAATGACAATAATCACCATTATTATTATTA
TTGATTATGAGGCTAGATTTGTCATATTGTATTTATTCTGGAGATGATAG
GCTTCGATTTTGTATAATAATTGAATAAATGCCATTTTATTATTAATGGG
AATGATTCTAATTGGCTGAAATTCAAATCCGTCGATTTGATTGGCCAGAA
ACAAATTTGTATACACTAATCAATTTCTTTGGATTTATAATTATTAATGC
GCAATGATTTCTATTGTGAGAAATACCGTTTTTATATATTTATAAATTTT
GTATCATAATTGGTTCTGAATTTCTTATTTTATTGATTTTTCTGTGTATG
TATGTATGTGTGCGCATATAATGATTTTGAGAATTATTTTACTACCTTGT
TTTGACCGTAACATGTTGATTGGTATGTAATTGTATTGATTGTATTATTA
TTATTATTATTGGGATTTTATCTGATTGAAATCGATTTTAAACACAATGT
GCACTTCGATCGATTTTCTACTGGAATTCTCACAAATTTTATAAAATTCA
AATTGAAAAAACTTGAAGTAGATTCTCAACTCTGATTTATTTTTATATTC
GCTGTTTAACCAATAATATGAAATAAT

protein sequence of SMED30018953-orf-1

>SMED30018953-orf-1 ID=SMED30018953-orf-1|Name=SMED30018953-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=108bp
MVIIVIHSKNMKYIFIAHYRHTLLAGAGLQSGTRQLYHPWWQQRRRRRCT
QYCAPQTATQPIAQQPMFDIDCIQMPISSDRSVSHRDLRFSADRGFFWSN
FSRIFDA*

protein sequence of SMED30018953-orf-2

>SMED30018953-orf-2 ID=SMED30018953-orf-2|Name=SMED30018953-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1446bp
MNSDFSNFEKSVEECINYNFDDNSPVNQKSKRQSFRSKSKDHQVNGKSDA
PLTNWLECKTSYSWLYVNNEHPKCSICDEAIKECNEISTTSWTNSEMSLE
KHDPKFDEEKILQIHMTSDNHIKATEILSTKLTETKLDCDFTESIPSFIS
NSEWNYLKIQFPWLIFKNDSLSCSICNETSVKQKKAISTLNLFGNLSQKY
QRDFKQFEKHGKKLGHSKDLCQSNDLNLTPKKEEPKRVSNSTPRKSIVFS
QPNVTTRTAIRKSLYDRNIVPDSIDETSWNEVKSEYPWVYAHQNILGCLY
CEDAFKINNESMMPTSWTNPDTTENRQFTSLKDLRSKYRLNQHQLTKNHK
TATRVLSHGKPINATNQKKTESTVKVETIPVPAVESKPIDFRVPSTVRAS
RKSAPSKLTFDDKIGHSETEKSKKSPEKIDLSSIPSFLTEDQYITLTTKY
GWLNLTNESLYSCSVCLEALKIVPDAVIKTKFTSGPDPLEPPLTYSIFRK
RLYRHAESKSHSSALTIVNRSSSELPKVSSTQSVAVVSQQQPLQSSQPLP
SADSRFTRLKSGIRSKIDYKRMSEGNSQSEPTEHYTYEVINLPVPESPKK
RKESSTVSSSITWMCPQCKSHFRNTDDLIQHISLCDYHQSFDSTQQQQLA
CPCNPTVLRFNTITKLDLHAAQEHDNQSYFHCYICSDRYNRLTALYHHML
TNHLISTWDPFEAYLPALKPSEQFRCLFCSCDFTSNLLLTKHYIFSDCRV
RLQPTVVLESISGIVLAEISHNIQEEVTVLDVEELPDEKSTVIYSPVKKA
KSQHNRISRNHPLRRFCSDKKNKIKESPKKSDIQEQNISESINKSNSEKS
DHLPIDKSNNSKTDKSITDTESINQQNSDNVIINQTEPKPDQSVSETKPI
SSITNKIVTKNRNSKSRTKKPAIKSPKSMEMSHQVVDLNEIMHESRSLLT
ESTKRIDHLLPVSSKRKKEPIRIQSQLSPCKKLKPQIERPAPMPITPGND
VDNSEMILSGLSFMDRMKKIRQMKKNRTEQQREQMMAVERKIAEINEQFQ
GPNSLIDKSDRIKKLLSSDQYSMADLKSIMQSEAIRSSRAEKRRNPDEIN
HLLQQPPPPGTPPKQQKQMTVPTTLVIDNSTKSSISPLKSENFSCNVCQL
KFKSLRARDSHTTSEHKGLKLFCCKVCDLSFTTHILLRKHAQKYHIDNVS
LAVFGKENASEIDFSFQCPFCPLQFTGRSGLNHHITSGHRTDTDSTTQSG
HHDDFLAKLIAADPNFSPQSCLICQEIMNNEFELDIHTIEHQKECQTAEL
EPTQFACPKCCRLFFGRDGKSYLKDHYNIIHLSKPLPNCEECDTKFSSTV
CYSMHRKSVKNCSKKTPDQLKIEDPYEKLNDPMKLAFVCSRCQTLVAGQS
AELRFEEHNIECNAAAAAAATTDDRADECPIVTQPQPAECVDNGQ*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000429	neoblast
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR036236	Znf_C2H2_sf
IPR015880	Znf_C2H2-like
IPR007087	Znf_C2H2

Vocabulary: **molecular function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1028..1048
None	No IPR available	GENE3D	G3DSA:3.30.160.60		coord: 1139..1213 e-value: 1.2E-7 score: 33.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 402..427
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 405..427
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 812..833
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 852..911
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 798..932
None	No IPR available	PANTHER	PTHR24408	FAMILY NOT NAMED	coord: 78..743 coord: 816..1394
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 1143..1166 e-value: 1.8 score: 17.6 coord: 680..703 e-value: 5.8 score: 15.4 coord: 1305..1331 e-value: 160.0 score: 2.7 coord: 724..744 e-value: 180.0 score: 2.1 coord: 1172..1195 e-value: 0.45 score: 19.6 coord: 1216..1239 e-value: 0.0099 score: 25.1 coord: 613..638 e-value: 8.1 score: 14.1 coord: 1269..1291 e-value: 15.0 score: 11.8
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 682..703
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 1218..1239
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 1173..1195
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 1145..1166
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 1216..1244 score: 8.559
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 1172..1200 score: 8.517
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	SSF57667	beta-beta-alpha zinc fingers	coord: 1142..1191

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SMED30018953

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Owlery

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